NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06163-1
Contig ID Contig-U06163-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U06163-1 (Contig-U06163-1Q) /CSM_Contig/Contig-U06163-1Q.Seq.d
GATAATGGTATAATGTTTCCATCTAGAGCAGATATATTTTTAGCACCAGT
AAATATGAATAAATTAATGGATAAAAAAATAAACTTTTGGAATGATGTAT
ATGGTTTTGATTTTTCAATTTTATCTGAACCAGCTCTTCAAGAATTACCA
GCTCCATATGTTGAATATTTAGAAAAAGATCAATTAGTTTTAAAAGAAAA
TAAAATTTTATCTGTAAATTTTAATACAATTACATGTGAAGAATTAGAAG
ATATAATAATAAATAATATAGATTTTAAATTTCCAGAAAATATTAAACCA
AAAACTATTCACGGATTTGGAATTTGGTTTATTTGTTATTTCGACGGATC
AAAAGGTACTGTCGAATTATCAACAGCACCAGGTGATCCAGAAACTCATT
GGAAACAAACTACAATCCTTTACCATCAGGTATTGATTTAGAAGGTGGAG
AAACAATGACTTGTAGATTACAAATGACCCAAGATTCTTTGAATAAAAGA
ATTTATGATTTAAATTTAGAGTTTCCAGATGACGAAG
Gap no gap
Contig length 537
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6283661
End point 6284199
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U06163
List of clone(s) 

est1=VFG261Z,1,538
Translated Amino Acid sequence 
DNGIMFPSRADIFLAPVNMNKLMDKKINFWNDVYGFDFSILSEPALQELPAPYVEYLEKD
QLVLKENKILSVNFNTITCEELEDIIINNIDFKFPENIKPKTIHGFGIWFICYFDGSKGT
VELSTAPGDPETHWKQTTILYHQVLI*kvekq*lvdyk*pkil*ikefmi*i*sfqmtk
Translated Amino Acid sequence (All Frames) 
Frame A:
DNGIMFPSRADIFLAPVNMNKLMDKKINFWNDVYGFDFSILSEPALQELPAPYVEYLEKD
QLVLKENKILSVNFNTITCEELEDIIINNIDFKFPENIKPKTIHGFGIWFICYFDGSKGT
VELSTAPGDPETHWKQTTILYHQVLI*kvekq*lvdyk*pkil*ikefmi*i*sfqmtk


Frame B:
imv*cfhleqiyf*hq*i*in*wikk*tfgmmymvlifqfylnqlfknyqlhmlni*kki
n*f*kkikfyl*iliqlhvkn*ki***ii*ilnfqkilnqklftdlefglfvistdqkvl
snyqqhqviqklignklqsftiry*frrwrnndl*itndprffe*knl*fkfrvsr*r


Frame C:
*wynvsi*sryifstskye*ing*knklle*ciwf*ffnfi*tsssritssic*ifrkrs
isfkrk*nfickf*ynym*rirrynnk*yrf*isrky*tknysriwnlvyllfrrikryc
riinstr*srnsletnynplpsgidleggetmtcrlqmtqdslnkriydlnlefpdde
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06163-1 (Contig-U06163-1Q)
/CSM_Contig/Contig-U06163-1Q.Seq.d
         (537 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06163-1 (Contig-U06163-1Q) /CSM_Contig/Conti...  1023  0.0
Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U11292-1 (Contig-U11292-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U14894-1 (Contig-U14894-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U13391-1 (Contig-U13391-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11864-1 (Contig-U11864-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11319-1 (Contig-U11319-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11005-1 (Contig-U11005-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U10057-1 (Contig-U10057-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U14653-1 (Contig-U14653-1Q) /CSM_Contig/Conti...    36  0.037

>Contig-U06163-1 (Contig-U06163-1Q) /CSM_Contig/Contig-U06163-1Q.Seq.d
          Length = 537

 Score = 1023 bits (516), Expect = 0.0
 Identities = 530/537 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gataatggtataatgtttccatctagagcagatatatttttagcaccagtaaatatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gataatggtataatgtttccatctagagcagatatatttttagcaccagtaaatatgaat 60

                                                                       
Query: 61  aaattaatggatnnnnnnntaaacttttggaatgatgtatatggttttgatttttcaatt 120
           ||||||||||||       |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaattaatggataaaaaaataaacttttggaatgatgtatatggttttgatttttcaatt 120

                                                                       
Query: 121 ttatctgaaccagctcttcaagaattaccagctccatatgttgaatatttagaaaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttatctgaaccagctcttcaagaattaccagctccatatgttgaatatttagaaaaagat 180

                                                                       
Query: 181 caattagttttaaaagaaaataaaattttatctgtaaattttaatacaattacatgtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caattagttttaaaagaaaataaaattttatctgtaaattttaatacaattacatgtgaa 240

                                                                       
Query: 241 gaattagaagatataataataaataatatagattttaaatttccagaaaatattaaacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaattagaagatataataataaataatatagattttaaatttccagaaaatattaaacca 300

                                                                       
Query: 301 aaaactattcacggatttggaatttggtttatttgttatttcgacggatcaaaaggtact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaactattcacggatttggaatttggtttatttgttatttcgacggatcaaaaggtact 360

                                                                       
Query: 361 gtcgaattatcaacagcaccaggtgatccagaaactcattggaaacaaactacaatcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcgaattatcaacagcaccaggtgatccagaaactcattggaaacaaactacaatcctt 420

                                                                       
Query: 421 taccatcaggtattgatttagaaggtggagaaacaatgacttgtagattacaaatgaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taccatcaggtattgatttagaaggtggagaaacaatgacttgtagattacaaatgaccc 480

                                                                    
Query: 481 aagattctttgaataaaagaatttatgatttaaatttagagtttccagatgacgaag 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagattctttgaataaaagaatttatgatttaaatttagagtttccagatgacgaag 537


>Contig-U14510-1 (Contig-U14510-1Q) /CSM_Contig/Contig-U14510-1Q.Seq.d
          Length = 1389

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 286  gaaaatattaaaccaaaaact 306
            |||||||||||||||||||||
Sbjct: 1042 gaaaatattaaaccaaaaact 1062


>Contig-U11292-1 (Contig-U11292-1Q) /CSM_Contig/Contig-U11292-1Q.Seq.d
          Length = 1939

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 191 taaaagaaaataaaattttat 211
           |||||||||||||||||||||
Sbjct: 428 taaaagaaaataaaattttat 448


 Score = 28.2 bits (14), Expect = 9.1
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 198 aaataaaattttat 211
           ||||||||||||||
Sbjct: 450 aaataaaattttat 437


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,560
Number of Sequences: 6905
Number of extensions: 14560
Number of successful extensions: 1971
Number of sequences better than 10.0: 731
length of query: 537
length of database: 5,674,871
effective HSP length: 16
effective length of query: 521
effective length of database: 5,564,391
effective search space: 2899047711
effective search space used: 2899047711
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 7
Homology vs DNA 
Query= Contig-U06163-1 (Contig-U06163-1Q) /CSM_Contig/Contig-U06163-1Q.Seq.d
         (537 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ431286) Dictyostelium discoideum cDNA clone:ddv13i16, 3' ...   908   0.0    2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...   379   0.0    4
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    44   7e-05  11
(AM422018) Candidatus Phytoplasma australiense complete genome.    40   6e-04  16
(AY077834) Sheeppox virus NISKHI, complete genome.                 40   0.002  7
(AY077832) Sheeppox virus 10700-99 strain TU-V02127, complet...    40   0.002  7
(AY077833) Sheeppox virus A, complete genome.                      40   0.002  7
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   0.003  19
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   0.003  14
(X04465) Marchantia polymorpha chloroplast genome DNA.             36   0.005  8
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin...    40   0.005  8
(AF409137) Lumpy skin disease virus NW-LW isolate Neethling ...    40   0.005  8
(AX458577) Sequence 123 from Patent WO0246454.                     34   0.005  8
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    36   0.006  12
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   0.008  16
(CU914556) Brassica rapa subsp. pekinensis clone KBrH088C05,...    46   0.012  5
(CP000312) Clostridium perfringens SM101, complete genome.         42   0.012  15
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   0.016  9
(AX346393) Sequence 1464 from Patent WO0200928.                    34   0.017  6
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    32   0.018  10
(AC161856) Bos taurus clone CH240-95K16, WORKING DRAFT SEQUE...    38   0.019  4
(AY077835) Goatpox virus Pellor, complete genome.                  40   0.019  7
(AX344552) Sequence 3 from Patent WO0200932.                       44   0.019  10
(AY077836) Goatpox virus G20-LKV, complete genome.                 40   0.019  7
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.019  11
(EJ230500) 1092402583274 Global-Ocean-Sampling_GS-27-01-01-1...    34   0.021  4
(AX392734) Sequence 24 from Patent WO0212526.                      36   0.023  6
(AR707081) Sequence 24 from patent US 6933145.                     36   0.023  6
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    40   0.023  7
(CT737227) Zebrafish DNA sequence from clone CH211-138K19 in...    32   0.028  8
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         36   0.029  10
(AC219967) Bos taurus clone CH240-317H9, WORKING DRAFT SEQUE...    38   0.031  3
(AX392737) Sequence 27 from Patent WO0212526.                      34   0.033  5
(AR707084) Sequence 27 from patent US 6933145.                     34   0.033  5
(AX344551) Sequence 2 from Patent WO0200932.                       44   0.055  10
(AC216466) Populus trichocarpa clone POP027-H05, complete se...    40   0.056  5
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    38   0.057  11
(AX344507) Sequence 354 from Patent WO0200926.                     32   0.058  6
(AF409138) Lumpy skin disease virus isolate Neethling vaccin...    40   0.060  7
(BH160571) ENTRX41TF Entamoeba histolytica Sheared DNA Entam...    40   0.064  2
(CU633377) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.082  1
(CN159873) 948988 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence.     50   0.082  1
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.082  15
(AC166508) Bos taurus clone CH240-182F18, WORKING DRAFT SEQU...    36   0.093  7
(AC176207) Strongylocentrotus purpuratus clone R3-3063I13, W...    46   0.096  3
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   0.099  11
(BX571857) Staphylococcus aureus strain MSSA476, complete ge...    36   0.11   18
(AC198446) Glycine max clone gmw2-129e12, complete sequence.       44   0.11   5
(AC230162) Bos taurus clone CH240-519F8, WORKING DRAFT SEQUE...    38   0.11   6
(AC164211) Bos taurus clone CH240-152P21, *** SEQUENCING IN ...    48   0.12   5
(AC172158) Bos taurus clone CH240-262I10, WORKING DRAFT SEQU...    42   0.13   4
(CP000727) Clostridium botulinum A str. Hall, complete genome.     46   0.15   13
(AC170834) Bos taurus clone CH240-250J4, WORKING DRAFT SEQUE...    38   0.17   7
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co...    36   0.17   19
(AC157143) Bos taurus clone CH240-69K2, WORKING DRAFT SEQUEN...    38   0.17   6
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    36   0.18   6
(AC164271) Bos taurus clone CH240-145M9, *** SEQUENCING IN P...    38   0.18   4
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    46   0.18   13
(AC176142) Strongylocentrotus purpuratus clone R3-2C19, WORK...    36   0.19   2
(AC151194) Bos taurus clone CH240-197H14, WORKING DRAFT SEQU...    38   0.20   6
(CU915524) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.22   4
(AX345829) Sequence 900 from Patent WO0200928.                     40   0.22   3
(AX392736) Sequence 26 from Patent WO0212526.                      34   0.23   6
(AR707083) Sequence 26 from patent US 6933145.                     34   0.23   6
(ET856785) CHO_OF147xa22f1.ab1 CHO_OF Nicotiana tabacum geno...    36   0.24   2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    36   0.26   15
(EA102829) Sequence 212 from patent US 7195870.                    40   0.27   3
(AX323822) Sequence 310 from Patent WO0192565.                     40   0.27   3
(AX278049) Sequence 212 from Patent WO0177375.                     40   0.27   3
(AC219961) Bos taurus clone CH240-317F22, WORKING DRAFT SEQU...    38   0.28   5
(CR788226) Zebrafish DNA sequence from clone DKEY-205F16 in ...    46   0.29   3
(AC225936) Bos taurus Y BAC CH240-431B11 (Children's Hospita...    38   0.29   4
(AC216756) Bos taurus  BAC CH240-444K24 (Children's Hospital...    38   0.29   4
(AC231833) Bos taurus clone CH240-254C23, WORKING DRAFT SEQU...    38   0.29   4
(AC226030) Bos taurus  BAC CH240-415P8 (Children's Hospital ...    38   0.29   4
(EW679945) CE2001C11.b Rhipicephalus (boophilus) microplus B...    40   0.31   2
(EW680054) CE2004E05.b Rhipicephalus (boophilus) microplus B...    40   0.31   2
(AC216978) Bos taurus  BAC CH240-311O3 (Children's Hospital ...    38   0.31   4
(EW679057) CE2001C11.g Rhipicephalus (boophilus) microplus B...    40   0.31   2
(AC169357) Bos taurus clone CH240-240C1, WORKING DRAFT SEQUE...    38   0.31   4
(EW679066) CE2001G09.g Rhipicephalus (boophilus) microplus B...    40   0.32   2
(AC225935) Bos taurus Y BAC CH240-411D10 (Children's Hospita...    38   0.32   4
(AC220873) Bos taurus clone CH240-342G12, WORKING DRAFT SEQU...    48   0.32   1
(AC219242) Bos taurus clone CH240-334B15, WORKING DRAFT SEQU...    48   0.32   1
(AC164664) Bos taurus clone CH240-156D11, *** SEQUENCING IN ...    48   0.32   1
(CZ524732) GMW2-66M6a.g2 GMW2 Glycine max genomic, genomic s...    48   0.32   1
(CW737531) MARC_838496 RPCI-42-224I18 Bos taurus genomic clo...    48   0.32   1
(CL049783) CH216-71B13_Sp6.1 CH216 Xenopus (Silurana) tropic...    48   0.32   1
(AW363365) RC4-CT0322-261299-011-g05 CT0322 Homo sapiens cDN...    48   0.32   1
(EW679532) CE1014H07.b Rhipicephalus (boophilus) microplus B...    40   0.33   2
(EW679989) CE2002D04.b Rhipicephalus (boophilus) microplus B...    40   0.33   2
(EW679966) CE2001G09.b Rhipicephalus (boophilus) microplus B...    40   0.33   2
(EW679406) CE1010G12.b Rhipicephalus (boophilus) microplus B...    40   0.33   2
(AC141673) Apis mellifera clone CH224-54J7, WORKING DRAFT SE...    40   0.34   2
(EW680066) CE2005A04.b Rhipicephalus (boophilus) microplus B...    40   0.34   2
(AC231450) Bos taurus clone CH240-414K2, WORKING DRAFT SEQUE...    38   0.34   4
(EW679107) CE1001E07.b Rhipicephalus (boophilus) microplus B...    40   0.35   2
(EW679542) CE1015C08.b Rhipicephalus (boophilus) microplus B...    40   0.36   2
(EW678870) CE1006A03.g Rhipicephalus (boophilus) microplus B...    40   0.36   2
(AC226428) Bos taurus  BAC CH240-462K8 (Children's Hospital ...    38   0.36   4

>(BJ431286) Dictyostelium discoideum cDNA clone:ddv13i16, 3' end,
           single read.
          Length = 538

 Score =  908 bits (458), Expect(2) = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Minus


Query: 80  taaacttttggaatgatgtatatggttttgatttttcaattttatctgaaccagctcttc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 taaacttttggaatgatgtatatggttttgatttttcaattttatctgaaccagctcttc 400


Query: 140 aagaattaccagctccatatgttgaatatttagaaaaagatcaattagttttaaaagaaa 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aagaattaccagctccatatgttgaatatttagaaaaagatcaattagttttaaaagaaa 340


Query: 200 ataaaattttatctgtaaattttaatacaattacatgtgaagaattagaagatataataa 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ataaaattttatctgtaaattttaatacaattacatgtgaagaattagaagatataataa 280


Query: 260 taaataatatagattttaaatttccagaaaatattaaaccaaaaactattcacggatttg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taaataatatagattttaaatttccagaaaatattaaaccaaaaactattcacggatttg 220


Query: 320 gaatttggtttatttgttatttcgacggatcaaaaggtactgtcgaattatcaacagcac 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaatttggtttatttgttatttcgacggatcaaaaggtactgtcgaattatcaacagcac 160


Query: 380 caggtgatccagaaactcattggaaacaaactacaatcctttaccatcaggtattgattt 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 caggtgatccagaaactcattggaaacaaactacaatcctttaccatcaggtattgattt 100


Query: 440 agaaggtggagaaacaatgacttgtagattacaaatgacccaagattctttgaataaaag 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  agaaggtggagaaacaatgacttgtagattacaaatgacccaagattctttgaataaaag 40


Query: 500 aatttatgatttaaatttagagtttccagatgacgaag 537
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 39  aatttatgatttaaatttagagtttccagatgacgaag 2

 Score =  143 bits (72), Expect(2) = 0.0
 Identities = 72/72 (100%)
 Strand = Plus / Minus


Query: 1   gataatggtataatgtttccatctagagcagatatatttttagcaccagtaaatatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gataatggtataatgtttccatctagagcagatatatttttagcaccagtaaatatgaat 479


Query: 61  aaattaatggat 72
           ||||||||||||
Sbjct: 478 aaattaatggat 467

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 825,531,757
Number of extensions: 58851520
Number of successful extensions: 5897413
Number of sequences better than 10.0: 723
Length of query: 537
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 514
Effective length of database: 93,106,754,628
Effective search space: 47856871878792
Effective search space used: 47856871878792
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06163-1 (Contig-U06163-1Q) /CSM_Contig/Contig-U06163-1Q.Seq.d
         (537 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_73(AC116979|pid:none) Dictyostelium discoideum chromoso...   276   1e-91
AM920428_272(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    84   2e-15
AE017342_358(AE017342|pid:none) Cryptococcus neoformans var. neo...    84   3e-15
CU633901_111(CU633901|pid:none) Podospora anserina genomic DNA c...    80   1e-14
FM992688_94(FM992688|pid:none) Candida dubliniensis CD36 chromos...    80   4e-14
AP007154_384(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    79   6e-14
CR382134_38(CR382134|pid:none) Debaryomyces hansenii strain CBS7...    79   1e-13
AY272042_1(AY272042|pid:none) Emericella nidulans RmtA (rmtA) ge...    79   1e-13
AM270409_3(AM270409|pid:none) Aspergillus niger contig An18c0170...    77   2e-13
CR940348_862(CR940348|pid:none) Theileria annulata strain Ankara...    75   8e-13
(Q9URX7) RecName: Full=Probable protein arginine N-methyltransfe...    75   8e-13
AK088790_1(AK088790|pid:none) Mus musculus 2 days neonate thymus...    73   4e-12
CU928169_669(CU928169|pid:none) Kluyveromyces thermotolerans str...    73   5e-12
BC002249_1(BC002249|pid:none) Mus musculus protein arginine N-me...    72   7e-12
(Q9NZ06) RecName: Full=Protein arginine N-methyltransferase 1;  ...    72   7e-12
AB170133_1(AB170133|pid:none) Macaca fascicularis brain cDNA clo...    72   7e-12
AY775289_1(AY775289|pid:none) Homo sapiens protein arginine meth...    72   7e-12
AF222689_2(AF222689|pid:none) Homo sapiens protein arginine N-me...    72   7e-12
Y10807_1(Y10807|pid:none) H.sapiens mRNA for arginine methyltran...    72   7e-12
Y10805_1(Y10805|pid:none) H.sapiens mRNA for arginine methyltran...    72   7e-12
AK164421_1(AK164421|pid:none) Mus musculus 12 days embryo eyebal...    72   7e-12
BC051953_1(BC051953|pid:none) Mus musculus protein arginine N-me...    72   7e-12
BT043702_1(BT043702|pid:none) Salmo salar clone HM5_2390 protein...    72   9e-12
BC074614_1(BC074614|pid:none) Xenopus tropicalis protein arginin...    72   1e-11
CR762238_1(CR762238|pid:none) Xenopus tropicalis finished cDNA, ...    72   1e-11
BC106275_1(BC106275|pid:none) Xenopus laevis arginine methyltran...    71   2e-11
(Q9NR22) RecName: Full=Protein arginine N-methyltransferase 8;  ...    71   2e-11
AB209027_1(AB209027|pid:none) Homo sapiens mRNA for Protein argi...    71   2e-11
AY820756_1(AY820756|pid:none) Toxoplasma gondii chromosome XII p...    71   2e-11
BC060250_1(BC060250|pid:none) Mus musculus protein arginine N-me...    71   2e-11
DQ892381_1(DQ892381|pid:none) Synthetic construct clone IMAGE:10...    71   2e-11
AF263539_1(AF263539|pid:none) Homo sapiens arginine N-methyltran...    71   2e-11
(Q6PAK3) RecName: Full=Protein arginine N-methyltransferase 8;  ...    71   2e-11
AK304660_1(AK304660|pid:none) Homo sapiens cDNA FLJ55610 complet...    71   2e-11
BC044522_1(BC044522|pid:none) Danio rerio protein arginine methy...    70   3e-11
CR860001_1(CR860001|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1...    70   3e-11
CR382131_748(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    70   3e-11
BC158943_1(BC158943|pid:none) Xenopus tropicalis hypothetical pr...    70   4e-11
AY820755_1(AY820755|pid:none) Toxoplasma gondii chromosome Ia pr...    69   6e-11
AM294296_1(AM294296|pid:none) Drosophila simulans CG6554 gene, s...    69   8e-11
CR382122_284(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    69   8e-11
BC058308_1(BC058308|pid:none) Danio rerio protein arginine methy...    69   8e-11
BC067600_1(BC067600|pid:none) Danio rerio protein arginine methy...    69   8e-11
AY185359_1(AY185359|pid:none) Brassica rapa subsp. pekinensis pu...    69   8e-11
AE016814_378(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    68   2e-10
AC148360_3(AC148360|pid:none) Medicago truncatula clone mth2-27i...    68   2e-10
AK144412_1(AK144412|pid:none) Mus musculus 11 days embryo spinal...    67   2e-10
(Q08A71) RecName: Full=Probable protein arginine N-methyltransfe...    65   2e-10
BC000727_1(BC000727|pid:none) Homo sapiens protein arginine meth...    67   3e-10
AB169657_1(AB169657|pid:none) Macaca fascicularis brain cDNA, cl...    67   4e-10
AC159455_56(AC159455|pid:none) Trypanosoma brucei chromosome 5 c...    67   4e-10
AK223157_1(AK223157|pid:none) Homo sapiens mRNA for HMT1 hnRNP m...    66   5e-10
(Q7XKC0) RecName: Full=Probable protein arginine N-methyltransfe...    66   6e-10
AM294286_1(AM294286|pid:none) Drosophila melanogaster CG6554 gen...    66   6e-10
(A2XYY8) RecName: Full=Probable protein arginine N-methyltransfe...    66   6e-10
EU020680_1(EU020680|pid:none) Podura aquatica clone Paq3059f1 pu...    66   6e-10
BC104629_1(BC104629|pid:none) Bos taurus protein arginine methyl...    65   1e-09
BC093344_1(BC093344|pid:none) Danio rerio protein arginine methy...    65   1e-09
AJ007582_1(AJ007582|pid:none) Arabidopsis thaliana mRNA for argi...    65   1e-09
EU020675_1(EU020675|pid:none) Mesocyclops edax clone Meso3059f1 ...    64   2e-09
(O82210) RecName: Full=Probable protein arginine N-methyltransfe...    64   2e-09
AM910995_243(AM910995|pid:none) Plasmodium knowlesi strain H chr...    64   2e-09
AP007151_624(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    64   2e-09
AY375304_1(AY375304|pid:none) Emericella nidulans protein methyl...    64   3e-09
BT055041_1(BT055041|pid:none) Zea mays full-length cDNA clone ZM...    63   4e-09
AY063970_1(AY063970|pid:none) Arabidopsis thaliana putative argi...    63   4e-09
AP005508_9(AP005508|pid:none) Oryza sativa Japonica Group genomi...    63   4e-09
EF147663_1(EF147663|pid:none) Populus trichocarpa clone WS0124_D...    63   4e-09
BT045672_1(BT045672|pid:none) Salmo salar clone ssal-rgf-528-176...    63   5e-09
AE014187_240(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    63   5e-09
BT064204_1(BT064204|pid:none) Zea mays full-length cDNA clone ZM...    62   7e-09
BT043290_1(BT043290|pid:none) Zea mays full-length cDNA clone ZM...    62   7e-09
(Q6DC04) RecName: Full=Histone-arginine methyltransferase CARM1;...    62   9e-09
(A2Z8S0) RecName: Full=Probable protein arginine N-methyltransfe...    62   9e-09
AK158757_1(AK158757|pid:none) Mus musculus visual cortex cDNA, R...    62   1e-08
EU020672_1(EU020672|pid:none) Forficula auricularia clone Fau305...    62   1e-08
FM245359_1(FM245359|pid:none) Drosophila melanogaster CG6554 gen...    62   1e-08
AX452897_1(AX452897|pid:none) Sequence 1 from Patent WO0244358. ...    61   2e-08
AB201117_1(AB201117|pid:none) Rattus norvegicus CARM1-v4 mRNA fo...    61   2e-08
BC046240_1(BC046240|pid:none) Homo sapiens coactivator-associate...    61   2e-08
(Q4AE70) RecName: Full=Histone-arginine methyltransferase CARM1;...    61   2e-08
(Q86X55) RecName: Full=Histone-arginine methyltransferase CARM1;...    61   2e-08
BC003964_1(BC003964|pid:none) Mus musculus coactivator-associate...    61   2e-08
AB201116_1(AB201116|pid:none) Rattus norvegicus CARM1-v3 mRNA fo...    61   2e-08
AY207498_1(AY207498|pid:none) Chlamydomonas reinhardtii CR061 pr...    61   2e-08
EU661946_1(EU661946|pid:none) Sus scrofa coactivator-associated ...    61   2e-08
(Q54HI0) RecName: Full=Protein arginine N-methyltransferase 2;  ...    60   3e-08
EF055449_1(EF055449|pid:none) Xenopus laevis coactivator-associa...    60   3e-08
BT061859_1(BT061859|pid:none) Zea mays full-length cDNA clone ZM...    60   4e-08
CP001330_35(CP001330|pid:none) Micromonas sp. RCC299 chromosome ...    60   4e-08
EU020678_1(EU020678|pid:none) Nebalia hessleri clone Nhe3059f1 p...    60   4e-08
(Q5XK84) RecName: Full=Histone-arginine methyltransferase CARM1;...    60   5e-08
EU020679_1(EU020679|pid:none) Cypridopsis vidua clone Ost3059f1 ...    59   6e-08
EU020683_1(EU020683|pid:none) Triops longicaudatus clone Tlo3059...    59   8e-08
EU020681_1(EU020681|pid:none) Speleonectes tulumensis clone Stu3...    59   1e-07
CP001323_927(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    59   1e-07
EU162380_1(EU162380|pid:none) Onthophagus ferox arginine methylt...    58   1e-07
EU162374_1(EU162374|pid:none) Onthophagus alcyonides arginine me...    58   2e-07
CR859474_1(CR859474|pid:none) Pongo abelii mRNA; cDNA DKFZp459B1...    57   2e-07
AE017345_238(AE017345|pid:none) Cryptococcus neoformans var. neo...    57   2e-07
EU162373_1(EU162373|pid:none) Onthophagus aeruginosus arginine m...    57   2e-07
(Q96LA8) RecName: Full=Protein arginine N-methyltransferase 6;  ...    57   2e-07
EU162377_1(EU162377|pid:none) Onthophagus coscineus arginine met...    57   2e-07
AK001421_1(AK001421|pid:none) Homo sapiens cDNA FLJ10559 fis, cl...    57   2e-07
EU162375_1(EU162375|pid:none) Onthophagus asperulus arginine met...    57   3e-07
AM270021_18(AM270021|pid:none) Aspergillus niger contig An02c026...    57   3e-07
EU162384_1(EU162384|pid:none) Onthophagus hecate arginine methyl...    56   5e-07
CU638743_491(CU638743|pid:none) Podospora anserina genomic DNA c...    56   5e-07
EU162391_1(EU162391|pid:none) Onthophagus sugillatus arginine me...    56   5e-07
EU020684_1(EU020684|pid:none) Tanystylum orbiculare clone Tor305...    56   5e-07
AK087551_1(AK087551|pid:none) Mus musculus 0 day neonate eyeball...    56   7e-07
EU020677_1(EU020677|pid:none) Narceus americanus clone Nam3059f1...    55   9e-07
AM502230_85(AM502230|pid:none) Leishmania infantum chromosome 12.      55   9e-07
CT005251_132(CT005251|pid:none) Leishmania major strain Friedlin...    55   9e-07
EU162379_1(EU162379|pid:none) Onthophagus evanidus arginine meth...    55   1e-06
(A2YPT7) RecName: Full=Probable histone-arginine methyltransfera...    54   2e-06
BC147870_1(BC147870|pid:none) Bos taurus protein arginine methyl...    54   2e-06
AK298185_1(AK298185|pid:none) Homo sapiens cDNA FLJ60751 complet...    52   7e-06
(Q0WVD6) RecName: Full=Probable protein arginine N-methyltransfe...    52   7e-06
AF059531_1(AF059531|pid:none) Homo sapiens protein arginine N-me...    52   7e-06
AK300591_1(AK300591|pid:none) Homo sapiens cDNA FLJ61411 complet...    52   7e-06
AC069472_15(AC069472|pid:none) Arabidopsis thaliana chromosome 3...    52   7e-06
BT002972_1(BT002972|pid:none) Arabidopsis thaliana clone RAFL15-...    52   7e-06
BC019339_1(BC019339|pid:none) Homo sapiens protein arginine meth...    52   7e-06
AP002047_10(AP002047|pid:none) Arabidopsis thaliana genomic DNA,...    52   7e-06
(Q9MAT5) RecName: Full=Probable protein arginine N-methyltransfe...    52   1e-05
AY058846_1(AY058846|pid:none) Arabidopsis thaliana At1g04870/F13...    52   1e-05
AF436837_1(AF436837|pid:none) Arabidopsis thaliana At1g04870/F13...    52   1e-05
T40755(T40755)arginine n-methyltransferase - fission yeast  (Sch...    51   2e-05
(O13648) RecName: Full=Ribosomal protein arginine N-methytransfe...    51   2e-05
AP000383_1(AP000383|pid:none) Arabidopsis thaliana genomic DNA, ...    48   2e-05
AE014297_2031(AE014297|pid:none) Drosophila melanogaster chromos...    51   2e-05
AK295973_1(AK295973|pid:none) Homo sapiens cDNA FLJ60588 complet...    50   3e-05
CR786573_4(CR786573|pid:none) Zebrafish DNA sequence from clone ...    50   3e-05
BT034192_1(BT034192|pid:none) Zea mays full-length cDNA clone ZM...    50   3e-05
AE014134_2094(AE014134|pid:none) Drosophila melanogaster chromos...    50   3e-05
(Q9VH48) RecName: Full=Probable histone-arginine methyltransfera...    50   4e-05
BT004851_1(BT004851|pid:none) Drosophila melanogaster RE68504 fu...    50   4e-05
AK155236_1(AK155236|pid:none) Mus musculus NOD-derived CD11c +ve...    49   6e-05
BC008128_1(BC008128|pid:none) Mus musculus protein arginine N-me...    49   6e-05
AK031738_1(AK031738|pid:none) Mus musculus 14 days embryo thymus...    49   6e-05
(Q84W92) RecName: Full=Probable histone-arginine methyltransfera...    49   8e-05
(O70467) RecName: Full=Protein arginine N-methyltransferase 3;  ...    49   8e-05
EF146886_1(EF146886|pid:none) Populus trichocarpa clone WS0121_J...    49   1e-04
AY810272_1(AY810272|pid:none) Schistosoma japonicum SJCHGC06989 ...    48   1e-04
EF134050_1(EF134050|pid:none) Perkinsus chesapeaki isolate Pch_c...    47   2e-04
BT004102_1(BT004102|pid:none) Arabidopsis thaliana clone RAFL15-...    47   2e-04
AY810447_1(AY810447|pid:none) Schistosoma japonicum SJCHGC04789 ...    47   3e-04
CP001326_697(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    47   3e-04
AL355927_7(AL355927|pid:none) Neurospora crassa DNA linkage grou...    47   4e-04
EZ000019_1(EZ000019|pid:none) TSA: Schistosoma japonicum SJCHGC0...    47   4e-04
CR954213_28(CR954213|pid:none) Ostreococcus tauri strain OTTH059...    41   6e-04
FJ751263_1(FJ751263|pid:none) Schistosoma japonicum isolate Anhu...    45   0.001
(A3BMN9) RecName: Full=Probable protein arginine N-methyltransfe...    45   0.001
AY223433_1(AY223433|pid:none) Schistosoma japonicum clone ZZZ411...    45   0.001
AP005292_21(AP005292|pid:none) Oryza sativa Japonica Group genom...    45   0.001
AP008213_1751(AP008213|pid:none) Oryza sativa (japonica cultivar...    45   0.001
CT005255_4(CT005255|pid:none) Leishmania major strain Friedlin, ...    45   0.001
(A2Y953) RecName: Full=Probable protein arginine N-methyltransfe...    45   0.001
AY449458_9(AY449458|pid:none) Oikopleura dioica clone BACOIKO002...    43   0.006
CP001326_48(CP001326|pid:none) Micromonas sp. RCC299 chromosome ...    42   0.010
CP000593_20(CP000593|pid:none) Ostreococcus lucimarinus CCE9901 ...    42   0.013
AM486261_1(AM486261|pid:none) Vitis vinifera contig VV78X011738....    40   0.029
AM429684_1(AM429684|pid:none) Vitis vinifera contig VV78X011738....    40   0.029
AE014296_2805(AE014296|pid:none) Drosophila melanogaster chromos...    36   0.55
BT070156_1(BT070156|pid:none) Zea mays full-length cDNA clone ZM...    35   1.2
AE014296_1935(AE014296|pid:none) Drosophila melanogaster chromos...    34   2.7
(Q5I0S8) RecName: Full=Leukocyte elastase inhibitor;  &BC088021_...    34   2.7
AK010534_1(AK010534|pid:none) Mus musculus ES cells cDNA, RIKEN ...    33   4.6
BT062500_1(BT062500|pid:none) Zea mays full-length cDNA clone ZM...    33   6.1
CP001103_117(CP001103|pid:none) Alteromonas macleodii 'Deep ecot...    32   7.9

>AC116979_73(AC116979|pid:none) Dictyostelium discoideum chromosome
           2 map 6445720-6776760 strain AX4, complete sequence.
          Length = 358

 Score =  276 bits (705), Expect(2) = 1e-91
 Identities = 132/140 (94%), Positives = 132/140 (94%)
 Frame = +1

Query: 1   DNGIMFPSRADIFLAPVNMNKLMDKKINFWNDVYGFDFSILSEPALQELPAPYVEYLEKD 180
           DNGIMFPSRADIFLAPVNMNKLMDKKINFWNDVYGFDFSILSEPALQELPAPYVEYLEKD
Sbjct: 147 DNGIMFPSRADIFLAPVNMNKLMDKKINFWNDVYGFDFSILSEPALQELPAPYVEYLEKD 206

Query: 181 QLVLKENKILSVNFNTITCEELEXXXXXXXXFKFPENIKPKTIHGFGIWFICYFDGSKGT 360
           QLVLKENKILSVNFNTITCEELE        FKFPENIKPKTIHGFGIWFICYFDGSKGT
Sbjct: 207 QLVLKENKILSVNFNTITCEELEDIIVNNIDFKFPENIKPKTIHGFGIWFICYFDGSKGT 266

Query: 361 VELSTAPGDPETHWKQTTIL 420
           VELSTAPGDPETHWKQTTIL
Sbjct: 267 VELSTAPGDPETHWKQTTIL 286

 Score = 84.0 bits (206), Expect(2) = 1e-91
 Identities = 39/39 (100%), Positives = 39/39 (100%)
 Frame = +3

Query: 420 LPSGIDLEGGETMTCRLQMTQDSLNKRIYDLNLEFPDDE 536
           LPSGIDLEGGETMTCRLQMTQDSLNKRIYDLNLEFPDDE
Sbjct: 287 LPSGIDLEGGETMTCRLQMTQDSLNKRIYDLNLEFPDDE 325

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 828,747,156
Number of extensions: 16811729
Number of successful extensions: 53176
Number of sequences better than 10.0: 171
Number of HSP's gapped: 53039
Number of HSP's successfully gapped: 185
Length of query: 179
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 59
Effective length of database: 656,452,579
Effective search space: 38730702161
Effective search space used: 38730702161
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U06163-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0