| Contig-U06094-1 |
| Contig ID |
Contig-U06094-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1129 |
| Chromosome number (1..6, M) |
- |
| Chromosome length |
- |
| Start point |
- |
| End point |
- |
| Strand (PLUS/MINUS) |
- |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U06094 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11. 7 |
| Homology vs DNA |
Query= Contig-U06094-1 (Contig-U06094-1Q) /CSM_Contig/Contig-U06094-1Q.Seq.d
(1129 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ430835) Dictyostelium discoideum cDNA clone:ddv9a05, 3' e... 537 0.0 4
(BJ412545) Dictyostelium discoideum cDNA clone:ddv9a05, 5' e... 305 0.0 6
(BJ431369) Dictyostelium discoideum cDNA clone:ddv13n20, 3' ... 458 e-167 3
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 40 0.077 6
(DH125299) Oryzias latipes Fosmid clone:GOLWFno391_l06, reve... 48 0.13 2
(AZ691158) ENTJK21TF Entamoeba histolytica Sheared DNA Entam... 50 0.18 1
(DH321040) Oryzias latipes Fosmid clone:GOLWFno678_b20, reve... 50 0.18 1
(FE234336) CAPG2768.rev CAPG Naegleria gruberi amoeba stage ... 44 0.55 2
(AC099297) Rattus norvegicus clone CH230-227A15, WORKING DRA... 46 0.65 3
(AF327965) Marpissine sp. MCH-2001 16S ribosomal RNA, partia... 48 0.73 1
(EY054846) CATC5112.fwd CATC Artemisia annua, Tanzanian, fro... 48 0.73 1
(EY054845) CATC5112.rev CATC Artemisia annua, Tanzanian, fro... 48 0.73 1
(CE058324) tigr-gss-dog-17000322463468 Dog Library Canis lup... 36 2.4 2
(EY075105) CAZI11600.fwd CAZI Artemisia annua normalized lea... 36 2.4 2
(EY056948) CATF10311.fwd CATF Artemisia annua, Tanzanian, fr... 36 2.4 2
(EY056947) CATF10311.rev CATF Artemisia annua, Tanzanian, fr... 36 2.4 2
(CT485787) Mouse DNA sequence from clone RP23-412N8 on chrom... 46 2.9 1
(AC188403) Callithrix jacchus BAC clone CH259-74H12 from chr... 46 2.9 1
(AC132504) Rattus norvegicus clone CH230-202F20, *** SEQUENC... 46 2.9 1
(AC103336) Rattus norvegicus clone CH230-105J3, *** SEQUENCI... 46 2.9 1
(AC099299) Rattus norvegicus clone CH230-50D6, *** SEQUENCIN... 46 2.9 1
(AC098080) Rattus norvegicus clone CH230-127B18, *** SEQUENC... 46 2.9 1
(AC097610) Rattus norvegicus clone CH230-163L24, *** SEQUENC... 46 2.9 1
(AC199688) Spermophilus tridecemlineatus clone VMRC20-171D23... 46 2.9 1
(AC199303) Spermophilus tridecemlineatus clone VMRC20-685N13... 46 2.9 1
(AC173121) Bos taurus clone CH240-493G15, WORKING DRAFT SEQU... 46 2.9 1
(AK164210) Mus musculus 9 days embryo whole body cDNA, RIKEN... 46 2.9 1
(AK163727) Mus musculus 10 days neonate cerebellum cDNA, RIK... 46 2.9 1
(FH503872) CHO_OF4828xe04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.9 1
(FH503784) CHO_OF4828xe04f1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.9 1
(ER590920) 1093016198190 Global-Ocean-Sampling_GS-36-01-01-2... 46 2.9 1
(ER577430) 1093015816727 Global-Ocean-Sampling_GS-36-01-01-2... 46 2.9 1
(EJ857936) 1093017956856 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.9 1
(AM669372) Entamoeba terrapinae GSS, clone terra153d09.q1k. 46 2.9 1
(EJ492912) 1095403553013 Global-Ocean-Sampling_GS-28-01-01-1... 46 2.9 1
(EI013077) bb71b09.f Dekkera bruxellensis Random Genomic Lib... 46 2.9 1
(DU881117) 388118 Tomato HindIII BAC Library Solanum lycoper... 46 2.9 1
(EJ716237) 1092959420503 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.2 2
(EJ724128) 1092959481265 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.4 2
(FH886499) OSB_664003xp08f1.ab1 OSB_664 Nicotiana tabacum ge... 36 4.7 2
(FH886199) OSB_664003xm11f1.ab1 OSB_664 Nicotiana tabacum ge... 36 6.0 2
(AC012177) Homo sapiens chromosome 16 clone RP11-231O22, com... 32 6.7 9
(AC141412) Homo sapiens chromosome 16 clone RP11-982L7, WORK... 32 6.9 9
(CC245207) CH261-36N19_RM1.1 CH261 Gallus gallus genomic clo... 34 7.0 2
(ER862759) PPTC646TF Solanum tuberosum RHPOTKEY BAC ends Sol... 32 7.3 2
(CJ392352) Molgula tectiformis cDNA, gonad clone:mtgd019e19,... 40 7.6 2
(CJ390134) Molgula tectiformis cDNA, gonad clone:mtgd012o08,... 40 8.0 2
(AG952326) Drosophila sechellia DNA, clone: DSE1-004G13.F.fa... 42 8.0 2
(AC231155) Bos taurus clone CH240-95N9, WORKING DRAFT SEQUEN... 42 9.4 3
(FC560977) CAWF3590.fwd CAWF Lottia gigantea from mantle (H)... 36 9.6 2
>(BJ430835) Dictyostelium discoideum cDNA clone:ddv9a05, 3' end,
single read.
Length = 730
Score = 537 bits (271), Expect(4) = 0.0
Identities = 271/271 (100%)
Strand = Plus / Minus
Query: 824 aagctgagatgaaaaatcatccaaacaaacattggtatttaaattgtattgcaattgaac 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aagctgagatgaaaaatcatccaaacaaacattggtatttaaattgtattgcaattgaac 248
Query: 884 attcctatagacgtagtaaaagaggtagtgatttaattcaacatgtcttaaatttagctg 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 attcctatagacgtagtaaaagaggtagtgatttaattcaacatgtcttaaatttagctg 188
Query: 944 atagtcaaaatgcttcaatctatactgaatgtgatttagaattcactcaattctttaaaa 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atagtcaaaatgcttcaatctatactgaatgtgatttagaattcactcaattctttaaaa 128
Query: 1004 ctcataattttaaaacttcaaaattttatcaacaacattcaaatacacaagatgcaccac 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ctcataattttaaaacttcaaaattttatcaacaacattcaaatacacaagatgcaccac 68
Query: 1064 acttttatacaagattagaaatttcaaaaag 1094
|||||||||||||||||||||||||||||||
Sbjct: 67 acttttatacaagattagaaatttcaaaaag 37
Score = 329 bits (166), Expect(4) = 0.0
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 659 acaaacaattagtggtataatgatagcacaaccaccacatgatgtaaatggtgttagcat 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 acaaacaattagtggtataatgatagcacaaccaccacatgatgtaaatggtgttagcat 412
Query: 719 tgcagagatgtttaaagttggtatgtatatggcaccaattaaattgggtgtatcagtttt 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgcagagatgtttaaagttggtatgtatatggcaccaattaaattgggtgtatcagtttt 352
Query: 779 atcaagaattttaaaatcatcagatttcgcagaacgtatacatcaa 824
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atcaagaattttaaaatcatcagatttcgcagaacgtatacatcaa 306
Score = 305 bits (154), Expect(4) = 0.0
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 418 gagaactttgtcaagatgatattcaagaagcagcaatactattagagaaatcaacacgtg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gagaactttgtcaagatgatattcaagaagcagcaatactattagagaaatcaacacgtg 653
Query: 478 aggatatatttatgaatttctttttcaacaattcaccagaatatcgtatcagtggtggaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aggatatatttatgaatttctttttcaacaattcaccagaatatcgtatcagtggtggaa 593
Query: 538 cttggttttgtaataaaatgttaacctatgcttt 571
||||||||||||||||||||||||||||||||||
Sbjct: 592 cttggttttgtaataaaatgttaacctatgcttt 559
Score = 52.0 bits (26), Expect(4) = 0.0
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 579 gcaagagtttggggatgttttgaact 604
||||||||||||||||||||||||||
Sbjct: 551 gcaagagtttggggatgttttgaact 526
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,120,422,777
Number of extensions: 68223273
Number of successful extensions: 5609274
Number of sequences better than 10.0: 51
Length of query: 1129
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1105
Effective length of database: 97,308,875,965
Effective search space: 107526307941325
Effective search space used: 107526307941325
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.21 |
| Homology vs Protein |
Query= Contig-U06094-1 (Contig-U06094-1Q) /CSM_Contig/Contig-U06094-1Q.Seq.d
(1129 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q84TG3) RecName: Full=U-box domain-containing protein 23; ... 54 1e-05
AC007017_16(AC007017|pid:none) Arabidopsis thaliana chromosome 2... 54 1e-05
AM488799_2(AM488799|pid:none) Vitis vinifera contig VV78X098962.... 53 2e-05
AK226869_1(AK226869|pid:none) Arabidopsis thaliana mRNA for phot... 52 3e-05
(P43254) RecName: Full=E3 ubiquitin-protein ligase COP1; ... 52 3e-05
L24437_1(L24437|pid:none) Arabidopsis thaliana (COP1) regulatory... 52 3e-05
(Q9SVC6) RecName: Full=U-box domain-containing protein 22; ... 52 5e-05
AK317081_1(AK317081|pid:none) Arabidopsis thaliana AT3G11840 mRN... 51 8e-05
AF029984_1(AF029984|pid:none) Lycopersicon esculentum COP1 homol... 50 1e-04
AY166506_1(AY166506|pid:none) Brassica rapa subsp. pekinensis CO... 50 1e-04
AJ276591_1(AJ276591|pid:none) Pisum sativum cop1 gene for consti... 49 2e-04
AF394913_1(AF394913|pid:none) Rosa hybrid cultivar photoregulato... 49 2e-04
CP001329_26(CP001329|pid:none) Micromonas sp. RCC299 chromosome ... 49 2e-04
AJ276592_1(AJ276592|pid:none) Pisum sativum lip1 mutant cop1 gen... 49 2e-04
(P93471) RecName: Full=E3 ubiquitin-protein ligase COP1; ... 49 2e-04
AJ289773_1(AJ289773|pid:none) Pisum sativum mRNA for COP1 regula... 49 2e-04
CP001102_1320(CP001102|pid:none) Candidatus Amoebophilus asiatic... 49 2e-04
EF637083_4(EF637083|pid:none) Arabidopsis thaliana ecotype Cvi-0... 49 3e-04
CR382135_816(CR382135|pid:none) Debaryomyces hansenii chromosome... 49 4e-04
CP001102_795(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 48 5e-04
AP007159_475(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 48 7e-04
(A0AUS0) RecName: Full=WD repeat, SAM and U-box domain-containin... 47 0.001
CR954209_40(CR954209|pid:none) Ostreococcus tauri strain OTTH059... 47 0.001
AC186954_13(AC186954|pid:none) Musa acuminata clone MA4_111B14, ... 47 0.001
CP001102_362(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 47 0.001
AP008215_502(AP008215|pid:none) Oryza sativa (japonica cultivar-... 47 0.002
AP008208_2986(AP008208|pid:none) Oryza sativa (japonica cultivar... 47 0.002
AB040053_1(AB040053|pid:none) Oryza sativa Japonica Group rCOP1 ... 47 0.002
AP005702_1(AP005702|pid:none) Oryza sativa Japonica Group genomi... 47 0.002
AP004026_3(AP004026|pid:none) Oryza sativa Japonica Group genomi... 47 0.002
AF289544_1(AF289544|pid:none) Oryza sativa copI gene, complete c... 47 0.002
EU966818_1(EU966818|pid:none) Zea mays clone 297562 unknown mRNA. 46 0.002
EU957105_1(EU957105|pid:none) Zea mays clone 1582858 ubiquitin-p... 46 0.002
CP001102_794(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 46 0.002
CP001577_292(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 46 0.003
AF446007_1(AF446007|pid:none) Dictyostelium discoideum MEK1 inte... 46 0.003
BT052460_1(BT052460|pid:none) Medicago truncatula clone MTYFD_FE... 46 0.003
AM484866_3(AM484866|pid:none) Vitis vinifera contig VV78X193876.... 46 0.003
AP008218_1168(AP008218|pid:none) Oryza sativa (japonica cultivar... 45 0.004
EU975702_1(EU975702|pid:none) Zea mays clone 497406 ubiquitin li... 45 0.004
BC169773_1(BC169773|pid:none) Xenopus laevis cDNA clone MGC:1965... 45 0.004
AC116330_21(AC116330|pid:none) Dictyostelium discoideum chromoso... 45 0.004
(Q9D0I6) RecName: Full=WD repeat, SAM and U-box domain-containin... 45 0.005
CP001328_237(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 45 0.005
BT054074_1(BT054074|pid:none) Zea mays full-length cDNA clone ZM... 45 0.005
(Q9ZV31) RecName: Full=U-box domain-containing protein 12; ... 45 0.006
AY035038_1(AY035038|pid:none) Arabidopsis thaliana unknown prote... 45 0.006
AP005391_14(AP005391|pid:none) Oryza sativa Japonica Group genom... 44 0.008
AP003876_19(AP003876|pid:none) Oryza sativa Japonica Group genom... 44 0.008
AY224495_1(AY224495|pid:none) Oryza sativa (japonica cultivar-gr... 44 0.008
FN392320_796(FN392320|pid:none) Pichia pastoris GS115 chromosome... 44 0.008
BT043413_1(BT043413|pid:none) Zea mays full-length cDNA clone ZM... 44 0.008
AM429121_2(AM429121|pid:none) Vitis vinifera contig VV78X041468.... 44 0.008
AK065683_1(AK065683|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.008
AC009307_1(AC009307|pid:none) Homo sapiens BAC clone RP11-292A10... 44 0.010
FB802583_1(FB802583|pid:none) Sequence 21856 from Patent WO20080... 44 0.010
AK243317_1(AK243317|pid:none) Oryza sativa Japonica Group cDNA, ... 44 0.010
AP004667_6(AP004667|pid:none) Oryza sativa Japonica Group genomi... 44 0.010
AB032715_1(AB032715|pid:none) Schizosaccharomyces pombe mRNA for... 44 0.010
AY970972_1(AY970972|pid:none) Bos taurus tripartite motif protei... 44 0.014
AK121978_1(AK121978|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.014
(O80742) RecName: Full=U-box domain-containing protein 19; ... 44 0.014
DQ211901_1(DQ211901|pid:none) Capsicum annuum U-box protein (PUB... 43 0.018
BC119899_1(BC119899|pid:none) Bos taurus TRIM, mRNA (cDNA clone ... 43 0.018
AC146755_21(AC146755|pid:none) Medicago truncatula clone mth2-15... 43 0.023
AM474392_1(AM474392|pid:none) Vitis vinifera contig VV78X162630.... 43 0.023
AK070506_1(AK070506|pid:none) Oryza sativa Japonica Group cDNA c... 43 0.023
(Q9SNC6) RecName: Full=U-box domain-containing protein 13; ... 43 0.023
EU730901_17(EU730901|pid:none) Brachypodium distachyon clone BAC... 42 0.030
EF677684_1(EF677684|pid:none) Picea sitchensis clone WS02772_P16... 42 0.030
AM453212_1(AM453212|pid:none) Vitis vinifera contig VV78X031497.... 42 0.030
AB026262_1(AB026262|pid:none) Cicer arietinum mRNA for ring fing... 42 0.030
AF059906_1(AF059906|pid:none) Schizosaccharomyces pombe ubiquiti... 42 0.030
(Q8S8S7) RecName: Full=U-box domain-containing protein 34; AltNa... 42 0.030
AM920437_2145(AM920437|pid:none) Penicillium chrysogenum Wiscons... 42 0.039
EU169832_1(EU169832|pid:none) Macaca nemestrina isolate J98259 c... 42 0.039
AL606618_6(AL606618|pid:none) Oryza sativa genomic DNA, chromoso... 42 0.039
AK102091_1(AK102091|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.039
AB012239_7(AB012239|pid:none) Arabidopsis thaliana genomic DNA, ... 42 0.051
AP008208_801(AP008208|pid:none) Oryza sativa (japonica cultivar-... 42 0.051
BT071744_1(BT071744|pid:none) Picea sitchensis clone WS0451_G15 ... 42 0.051
AK062592_1(AK062592|pid:none) Oryza sativa Japonica Group cDNA c... 42 0.051
(Q9FKG5) RecName: Full=U-box domain-containing protein 51; AltNa... 42 0.051
AC117072_44(AC117072|pid:none) Dictyostelium discoideum chromoso... 42 0.051
AK228747_1(AK228747|pid:none) Arabidopsis thaliana mRNA for hypo... 42 0.051
AE017345_324(AE017345|pid:none) Cryptococcus neoformans var. neo... 41 0.067
EU124691_1(EU124691|pid:none) Ateles geoffroyi TRIM22 (TRIM22) m... 41 0.067
EU124693_1(EU124693|pid:none) Lagothrix lagotricha TRIM22 (TRIM2... 41 0.067
BC084252_1(BC084252|pid:none) Xenopus laevis hypothetical LOC495... 41 0.067
AE013599_2806(AE013599|pid:none) Drosophila melanogaster chromos... 41 0.067
(Q683D5) RecName: Full=U-box domain-containing protein 37; ... 41 0.067
AK015745_1(AK015745|pid:none) Mus musculus adult male testis cDN... 41 0.067
CP001102_418(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 41 0.067
AY087421_1(AY087421|pid:none) Arabidopsis thaliana clone 35218 m... 41 0.067
AM453292_2(AM453292|pid:none) Vitis vinifera contig VV78X262046.... 41 0.067
FB813741_1(FB813741|pid:none) Sequence 33014 from Patent WO20080... 41 0.067
(Q5FWL3) RecName: Full=E3 ubiquitin-protein ligase NRDP1; ... 41 0.067
AK020527_1(AK020527|pid:none) Mus musculus 12 days embryo embryo... 41 0.067
(Q5R7T5) RecName: Full=E3 ubiquitin-protein ligase NRDP1; ... 41 0.067
AK146437_1(AK146437|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 41 0.067
AK318886_1(AK318886|pid:none) Arabidopsis thaliana AT3G54850 mRN... 41 0.067
BC112724_1(BC112724|pid:none) Bos taurus ring finger protein 41,... 41 0.067
(Q5D7I2) RecName: Full=Tripartite motif-containing protein 5; ... 41 0.067
BT055595_1(BT055595|pid:none) Zea mays full-length cDNA clone ZM... 41 0.067
(Q8VZ40) RecName: Full=U-box domain-containing protein 14; ... 41 0.067
AK118346_1(AK118346|pid:none) Arabidopsis thaliana At1g49780 mRN... 41 0.088
(Q681N2) RecName: Full=U-box domain-containing protein 15; ... 41 0.088
AK033764_1(AK033764|pid:none) Mus musculus adult male epididymis... 41 0.088
BC062252_1(BC062252|pid:none) Mus musculus RIKEN cDNA 9230105E10... 41 0.088
(Q9FXA4) RecName: Full=U-box domain-containing protein 26; ... 41 0.088
(Q5D7H8) RecName: Full=Tripartite motif-containing protein 5; ... 41 0.088
AB016888_3(AB016888|pid:none) Arabidopsis thaliana genomic DNA, ... 41 0.088
AM910993_220(AM910993|pid:none) Plasmodium knowlesi strain H chr... 41 0.088
AY593973_1(AY593973|pid:none) Cercopithecus tantalus tripartite ... 40 0.11
AY684991_1(AY684991|pid:none) Aotus trivirgatus TRIM5/cyclophili... 40 0.11
EU956712_1(EU956712|pid:none) Zea mays clone 1571354 spotted lea... 40 0.11
AY669399_1(AY669399|pid:none) Cercopithecus aethiops TRIM5-alpha... 40 0.11
AY646198_1(AY646198|pid:none) Aotus trivirgatus TRIM5/cyclophili... 40 0.11
(Q587N7) RecName: Full=Tripartite motif-containing protein 5; ... 40 0.11
AY220485_1(AY220485|pid:none) Nicotiana tabacum Avr9/Cf-9 rapidl... 40 0.11
AY625002_1(AY625002|pid:none) Cercopithecus aethiops cell-line C... 40 0.11
(Q5D7I3) RecName: Full=Tripartite motif-containing protein 5; ... 40 0.11
AB362930_1(AB362930|pid:none) Chlorocebus aethiops TRIM5 mRNA fo... 40 0.11
AE014134_2473(AE014134|pid:none) Drosophila melanogaster chromos... 40 0.11
AY843504_1(AY843504|pid:none) Chlorocebus aethiops TRIM5alpha (T... 40 0.11
AY625003_1(AY625003|pid:none) Cercopithecus aethiops cell-line V... 40 0.11
BT061177_1(BT061177|pid:none) Zea mays full-length cDNA clone ZM... 40 0.15
CR848559_1(CR848559|pid:none) Xenopus tropicalis finished cDNA, ... 40 0.15
EU371636_1(EU371636|pid:none) Macaca nemestrina isolate K98171 c... 40 0.15
(Q6IRP0) RecName: Full=RING finger protein 126-B; &BC070697_1(B... 40 0.15
EU124713_1(EU124713|pid:none) Alouatta sara TRIM22 (TRIM22) gene... 40 0.15
AC144737_1(AC144737|pid:none) Oryza sativa (japonica cultivar-gr... 40 0.15
EU169831_1(EU169831|pid:none) Macaca nemestrina isolate J98259 c... 40 0.15
EU124715_1(EU124715|pid:none) Pithecia pithecia pithecia TRIM22 ... 40 0.15
(Q6DIP3) RecName: Full=RING finger protein 126; &BC075492_1(BC0... 40 0.15
AY970971_1(AY970971|pid:none) Sus scrofa tripartite motif protei... 40 0.15
(Q5D7I5) RecName: Full=Tripartite motif-containing protein 5; ... 40 0.15
BT054118_1(BT054118|pid:none) Zea mays full-length cDNA clone ZM... 40 0.15
EU371630_1(EU371630|pid:none) Macaca nemestrina isolate A99030 c... 40 0.15
AM429550_1(AM429550|pid:none) Vitis vinifera contig VV78X030367.... 40 0.15
FB802581_1(FB802581|pid:none) Sequence 21854 from Patent WO20080... 40 0.15
AP002842_14(AP002842|pid:none) Oryza sativa Japonica Group genom... 40 0.15
(Q7T0Q3) RecName: Full=RING finger protein 126-A; &BC056088_1(B... 40 0.15
AK067611_1(AK067611|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.15
EU169830_1(EU169830|pid:none) Macaca nemestrina isolate A99030 c... 40 0.15
CP001574_72(CP001574|pid:none) Micromonas sp. RCC299 chromosome ... 40 0.15
EU169829_1(EU169829|pid:none) Macaca nemestrina isolate A99030 c... 40 0.15
(Q5D7I0) RecName: Full=Tripartite motif-containing protein 5; ... 40 0.20
EU124705_1(EU124705|pid:none) Pan paniscus TRIM22 (TRIM22) gene,... 40 0.20
BT068670_1(BT068670|pid:none) Zea mays full-length cDNA clone ZM... 40 0.20
FB903898_1(FB903898|pid:none) Sequence 123171 from Patent WO2008... 40 0.20
AK290434_1(AK290434|pid:none) Homo sapiens cDNA FLJ76655 complet... 40 0.20
AC148528_19(AC148528|pid:none) Medicago truncatula clone mth2-53... 40 0.20
BC022281_1(BC022281|pid:none) Homo sapiens tripartite motif-cont... 40 0.20
FB903890_1(FB903890|pid:none) Sequence 123163 from Patent WO2008... 40 0.20
AM432255_1(AM432255|pid:none) Vitis vinifera contig VV78X141678.... 40 0.20
AE014297_3602(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.20
(Q9FKG6) RecName: Full=U-box domain-containing protein 52; AltNa... 40 0.20
EU124706_1(EU124706|pid:none) Gorilla gorilla TRIM22 (TRIM22) ge... 40 0.20
AY740614_1(AY740614|pid:none) Saimiri boliviensis boliviensis TR... 40 0.20
EU157763_1(EU157763|pid:none) Macaca mulatta TRIMCyp (TRIMCyp) m... 40 0.20
BC114124_1(BC114124|pid:none) Bos taurus TRIM6-TRIM34 readthroug... 40 0.20
EU124708_1(EU124708|pid:none) Symphalangus syndactylus TRIM22 (T... 40 0.20
(Q5BN31) RecName: Full=Tripartite motif-containing protein 5; ... 40 0.20
AK301192_1(AK301192|pid:none) Homo sapiens cDNA FLJ51115 complet... 40 0.20
EU047927_1(EU047927|pid:none) Macaca nemestrina isolate pt-cl3 T... 40 0.20
EU124707_1(EU124707|pid:none) Pongo abelii TRIM22 (TRIM22) gene,... 40 0.20
AY118341_1(AY118341|pid:none) Drosophila melanogaster LD44641 fu... 40 0.20
A57041(A57041) transcription regulator Staf-50 - human &GN33664... 40 0.20
EU124699_1(EU124699|pid:none) Pan troglodytes TRIM22 (TRIM22) mR... 40 0.20
AE014296_2749(AE014296|pid:none) Drosophila melanogaster chromos... 40 0.20
DQ842021_1(DQ842021|pid:none) Macaca mulatta tripartite motif-co... 39 0.26
AK108418_1(AK108418|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.26
AK243689_1(AK243689|pid:none) Oryza sativa Japonica Group cDNA, ... 39 0.26
EU359036_1(EU359036|pid:none) Macaca mulatta TRIM5/cyclophilin A... 39 0.26
AY625001_1(AY625001|pid:none) Macaca mulatta cell-line LLCMK2 Tr... 39 0.26
(Q5D7I1) RecName: Full=Tripartite motif-containing protein 5; ... 39 0.26
AM446591_2(AM446591|pid:none) Vitis vinifera contig VV78X122741.... 39 0.26
EF113922_1(EF113922|pid:none) Cercocebus torquatus atys triparti... 39 0.26
(Q9QXK2) RecName: Full=E3 ubiquitin-protein ligase RAD18; ... 39 0.26
EU371637_1(EU371637|pid:none) Macaca fascicularis isolate 04116 ... 39 0.26
AB039903_1(AB039903|pid:none) Homo sapiens ifp1 mRNA for interfe... 39 0.26
(Q5UQ40) RecName: Full=Probable bifunctional E2/E3 enzyme R795; ... 39 0.26
EF113920_1(EF113920|pid:none) Cercocebus torquatus atys triparti... 39 0.26
(Q5D7I9) RecName: Full=Tripartite motif-containing protein 5; ... 39 0.26
EU124692_1(EU124692|pid:none) Callicebus moloch TRIM22 (TRIM22) ... 39 0.26
AY899886_1(AY899886|pid:none) Macaca mulatta tripartite motif-co... 39 0.26
BT043097_1(BT043097|pid:none) Zea mays full-length cDNA clone ZM... 39 0.26
(Q9C030) RecName: Full=Tripartite motif-containing protein 6; Al... 39 0.26
(Q5ZMC3) RecName: Full=WD repeat, SAM and U-box domain-containin... 39 0.26
FB746684_1(FB746684|pid:none) Sequence 151 from Patent EP1903111. 39 0.26
(Q2YEN0) RecName: Full=Tripartite motif-containing protein 5; ... 39 0.26
(Q810I1) RecName: Full=Tripartite motif-containing protein 50; ... 39 0.26
(Q5D7J2) RecName: Full=Tripartite motif-containing protein 5; ... 39 0.26
EF147812_1(EF147812|pid:none) Populus trichocarpa clone WS0125_D... 39 0.26
DQ842020_1(DQ842020|pid:none) Macaca mulatta tripartite motif-co... 39 0.26
EF113923_1(EF113923|pid:none) Cercocebus torquatus atys triparti... 39 0.26
(Q0PF16) RecName: Full=Tripartite motif-containing protein 5; ... 39 0.26
BC085684_1(BC085684|pid:none) Rattus norvegicus tripartite motif... 39 0.26
AY523632_1(AY523632|pid:none) Macaca mulatta tripartite motif-co... 39 0.26
CR749260_1(CR749260|pid:none) Homo sapiens mRNA; cDNA DKFZp781D1... 39 0.26
BT041133_1(BT041133|pid:none) Zea mays full-length cDNA clone ZM... 39 0.26
EF113915_1(EF113915|pid:none) Macaca mulatta tripartite motif-co... 39 0.26
BC127510_1(BC127510|pid:none) Rattus norvegicus RAD18 homolog (S... 39 0.26
AL732347_7(AL732347|pid:none) Oryza sativa genomic DNA, chromoso... 39 0.26
AB039904_1(AB039904|pid:none) Homo sapiens ifp1 mRNA for interfe... 39 0.26
EF113919_1(EF113919|pid:none) Macaca mulatta tripartite motif-co... 39 0.26
DQ308404_1(DQ308404|pid:none) Macaca nemestrina clone mnTRIMCyp_... 39 0.26
EF113918_1(EF113918|pid:none) Macaca mulatta tripartite motif-co... 39 0.26
EU969806_1(EU969806|pid:none) Zea mays clone 335831 ubiquitin-pr... 39 0.26
AM479559_1(AM479559|pid:none) Vitis vinifera contig VV78X210188.... 39 0.26
DQ308405_1(DQ308405|pid:none) Macaca nemestrina clone mnTRIMCyp_... 39 0.26
AK229923_1(AK229923|pid:none) Arabidopsis thaliana mRNA for hypo... 39 0.33
EU124714_1(EU124714|pid:none) Callithrix pygmaea TRIM22 (TRIM22)... 39 0.33
BC044430_1(BC044430|pid:none) Danio rerio RAD18 homolog (S. cere... 39 0.33
AC135600_1(AC135600|pid:none) Oryza sativa chromosome 3 BAC OSJN... 39 0.33
BT001518_1(BT001518|pid:none) Drosophila melanogaster LP11469 fu... 39 0.33
AY428536_1(AY428536|pid:none) Tetraodon nigroviridis breast canc... 39 0.33
AK057002_1(AK057002|pid:none) Homo sapiens cDNA FLJ32440 fis, cl... 39 0.33
GM977109_1(GM977109|pid:none) Sequence 17 from Patent WO20081456... 39 0.33
AC155886_29(AC155886|pid:none) Medicago truncatula chromosome 7 ... 39 0.33
EU124697_1(EU124697|pid:none) Macaca mulatta TRIM22 (TRIM22) mRN... 39 0.33
BT051922_1(BT051922|pid:none) Medicago truncatula clone MTYF5_F6... 39 0.33
EU972657_1(EU972657|pid:none) Zea mays clone 385363 unknown mRNA. 39 0.33
AM454280_1(AM454280|pid:none) Vitis vinifera contig VV78X038260.... 39 0.33
BT071472_1(BT071472|pid:none) Picea sitchensis clone WS02915_D15... 39 0.33
(Q9VE61) RecName: Full=RING finger protein 181 homolog; &AE0142... 39 0.33
A84849(A84849) probable RING zinc finger protein [imported] - Ar... 39 0.33
AC079890_10(AC079890|pid:none) Oryza sativa chromosome 10 BAC OS... 39 0.33
AM453037_3(AM453037|pid:none) Vitis vinifera contig VV78X255915.... 39 0.33
EU124695_1(EU124695|pid:none) Cercocebus torquatus atys TRIM22 (... 39 0.33
BT042809_1(BT042809|pid:none) Zea mays full-length cDNA clone ZM... 39 0.33
AF274563_1(AF274563|pid:none) Petroselinum crispum immediate-ear... 39 0.33
EF148380_1(EF148380|pid:none) Populus trichocarpa x Populus delt... 39 0.44
BT021682_1(BT021682|pid:none) Bos taurus RAD18 homolog (S. cerev... 39 0.44
AM447686_2(AM447686|pid:none) Vitis vinifera contig VV78X003621.... 39 0.44
AK101760_1(AK101760|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.44
BC109568_1(BC109568|pid:none) Bos taurus postreplication repair ... 39 0.44
AL357612_8(AL357612|pid:none) Arabidopsis thaliana DNA chromosom... 39 0.44
AP005775_1(AP005775|pid:none) Oryza sativa Japonica Group genomi... 39 0.44
FB802593_1(FB802593|pid:none) Sequence 21866 from Patent WO20080... 39 0.44
FB802529_1(FB802529|pid:none) Sequence 21802 from Patent WO20080... 39 0.44
AP008209_9(AP008209|pid:none) Oryza sativa (japonica cultivar-gr... 39 0.44
BC133164_1(BC133164|pid:none) Danio rerio cDNA clone MGC:158807 ... 39 0.44
AC134930_16(AC134930|pid:none) Oryza sativa (japonica cultivar-g... 39 0.44
AK117658_1(AK117658|pid:none) Arabidopsis thaliana At5g08139 mRN... 39 0.44
(Q5D7I6) RecName: Full=Tripartite motif-containing protein 5; ... 39 0.44
EU954485_1(EU954485|pid:none) Zea mays clone 1468594 U-box domai... 39 0.44
AY094458_1(AY094458|pid:none) Arabidopsis thaliana At3g19895 mRN... 39 0.44
EF091878_1(EF091878|pid:none) Solanum tuberosum ACRE 276-like pr... 39 0.44
AL590450_100(AL590450|pid:none) chromosome XI of strain GB-M1 of... 39 0.44
AM920431_389(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 39 0.44
CP000319_696(CP000319|pid:none) Nitrobacter hamburgensis X14, co... 39 0.44
AL844504_96(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 39 0.44
BC130022_1(BC130022|pid:none) Mus musculus tripartite motif-cont... 38 0.57
(Q9P0P0) RecName: Full=RING finger protein 181; &AC016753_5(AC0... 38 0.57
(Q810I2) RecName: Full=Tripartite motif-containing protein 50; ... 38 0.57
AJ306423_1(AJ306423|pid:none) Solanum tuberosum subsp. andigena ... 38 0.57
BC094899_1(BC094899|pid:none) Mus musculus tripartite motif-cont... 38 0.57
CP001335_2(CP001335|pid:none) Micromonas sp. RCC299 chromosome 1... 38 0.57
(Q865W2) RecName: Full=Tripartite motif-containing protein 50; ... 38 0.57
AK175585_1(AK175585|pid:none) Arabidopsis thaliana mRNA for arm ... 38 0.57
(Q7ZX20) RecName: Full=E3 ubiquitin-protein ligase RNF8 A; ... 38 0.57
CR380948_212(CR380948|pid:none) Candida glabrata strain CBS138 c... 38 0.57
CR858870_1(CR858870|pid:none) Pongo abelii mRNA; cDNA DKFZp469H0... 38 0.57
(Q99PQ1) RecName: Full=Tripartite motif-containing protein 12; ... 38 0.57
(Q5C8U4) RecName: Full=Tripartite motif-containing protein 5; ... 38 0.57
AB025631_20(AB025631|pid:none) Arabidopsis thaliana genomic DNA,... 38 0.74
AB006707_5(AB006707|pid:none) Arabidopsis thaliana genomic DNA, ... 38 0.74
AP004584_21(AP004584|pid:none) Oryza sativa Japonica Group genom... 38 0.74
AP009553_6(AP009553|pid:none) Sus scrofa genomic DNA, chromosome... 38 0.74
EU960987_1(EU960987|pid:none) Zea mays clone 230224 RHC1A mRNA, ... 38 0.74
EU977069_1(EU977069|pid:none) Zea mays clone 998178 zinc finger,... 38 0.74
AY274339_1(AY274339|pid:none) Drosophila yakuba strain 0261.0 Hs... 38 0.74
AK099846_1(AK099846|pid:none) Oryza sativa Japonica Group cDNA c... 38 0.74
AK118283_1(AK118283|pid:none) Arabidopsis thaliana At3g19950 mRN... 38 0.74
(Q9CY62) RecName: Full=RING finger protein 181; &AK010854_1(AK0... 38 0.74
AY274342_1(AY274342|pid:none) Drosophila melanogaster strain CAM... 38 0.74
AK018849_1(AK018849|pid:none) Mus musculus adult male testis cDN... 38 0.74
(Q3T0W3) RecName: Full=RING finger protein 181; &BC102230_1(BC1... 38 0.74
AY095995_1(AY095995|pid:none) Arabidopsis thaliana AT3g19950/MPN... 38 0.74
(Q9P3U8) RecName: Full=Uncharacterized RING finger protein C548.... 38 0.74
AY048293_1(AY048293|pid:none) Arabidopsis thaliana AT5g41350/MYC... 38 0.74
AY064045_1(AY064045|pid:none) Arabidopsis thaliana putative arm ... 38 0.74
AC126012_17(AC126012|pid:none) Medicago truncatula clone mth2-27... 38 0.74
(Q9C9A6) RecName: Full=U-box domain-containing protein 10; ... 38 0.74
CU928171_518(CU928171|pid:none) Kluyveromyces thermotolerans str... 38 0.74
AK014094_1(AK014094|pid:none) Mus musculus 13 days embryo head c... 38 0.74
BT002429_1(BT002429|pid:none) Arabidopsis thaliana putative RING... 38 0.74
CP001574_661(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 38 0.74
(Q6AXU4) RecName: Full=RING finger protein 181; &BC079313_1(BC0... 38 0.74
AB158487_6(AB158487|pid:none) Sus scrofa PPP1R11, ZNRD1, RNF39, ... 38 0.74
DQ812520_2(DQ812520|pid:none) Spironucleus barkhanus isolate Sp3... 38 0.74
BT034350_1(BT034350|pid:none) Zea mays full-length cDNA clone ZM... 38 0.74
BC168458_1(BC168458|pid:none) Xenopus tropicalis cDNA clone MGC:... 37 0.97
(Q9LQ92) RecName: Full=U-box domain-containing protein 54; ... 37 0.97
BT039305_1(BT039305|pid:none) Zea mays full-length cDNA clone ZM... 37 0.97
EU957508_1(EU957508|pid:none) Zea mays clone 1595718 ubiquitin-p... 37 0.97
AY057571_1(AY057571|pid:none) Arabidopsis thaliana AT4g23450/F16... 37 0.97
BT034303_1(BT034303|pid:none) Zea mays full-length cDNA clone ZM... 37 0.97
AY035147_1(AY035147|pid:none) Arabidopsis thaliana unknown prote... 37 0.97
AB248515_1(AB248515|pid:none) Nicotiana benthamiana mRNA for hyp... 37 0.97
BC170141_1(BC170141|pid:none) Xenopus laevis breast and ovarian ... 37 0.97
CR760703_1(CR760703|pid:none) Xenopus tropicalis finished cDNA, ... 37 0.97
AY087766_1(AY087766|pid:none) Arabidopsis thaliana clone 38292 m... 37 0.97
(Q4V8A0) RecName: Full=E3 SUMO-protein ligase NSE2; EC=... 37 0.97
BT071237_1(BT071237|pid:none) Picea sitchensis clone WS02813_F08... 37 0.97
EU371638_1(EU371638|pid:none) Macaca fascicularis isolate 04116 ... 37 0.97
BC159159_1(BC159159|pid:none) Xenopus tropicalis breast cancer 1... 37 0.97
CR853286_7(CR853286|pid:none) Zebrafish DNA sequence from clone ... 37 0.97
BC079688_1(BC079688|pid:none) Xenopus laevis MGC80300 protein, m... 37 0.97
(Q4KLN8) RecName: Full=E3 ubiquitin-protein ligase RNF8; ... 37 0.97
AM424511_2(AM424511|pid:none) Vitis vinifera contig VV78X250442.... 37 0.97
AF416868_1(AF416868|pid:none) Xenopus laevis breast and ovarian ... 37 0.97
BC005447_1(BC005447|pid:none) Mus musculus tripartite motif-cont... 37 1.3
DQ301460_1(DQ301460|pid:none) Homo sapiens voucher GM10969 TRIM5... 37 1.3
BC068671_1(BC068671|pid:none) Xenopus laevis hypothetical protei... 37 1.3
EU970201_1(EU970201|pid:none) Zea mays clone 342142 RING-H2 fing... 37 1.3
AL110123_8(AL110123|pid:none) Arabidopsis thaliana DNA chromosom... 37 1.3
J03776_1(J03776|pid:none) Mouse down regulatory protein (rpt-1r)... 37 1.3
BC078926_1(BC078926|pid:none) Rattus norvegicus similar to 92301... 37 1.3
AC008263_5(AC008263|pid:none) Arabidopsis thaliana chromosome 1 ... 37 1.3
AF220015_1(AF220015|pid:none) Mus musculus tripartite motif prot... 37 1.3
AK108060_1(AK108060|pid:none) Oryza sativa Japonica Group cDNA c... 37 1.3
AM468072_3(AM468072|pid:none) Vitis vinifera contig VV78X275177.... 37 1.3
CR380954_444(CR380954|pid:none) Candida glabrata strain CBS138 c... 37 1.3
AK003685_1(AK003685|pid:none) Mus musculus 18-day embryo whole b... 37 1.3
CR853286_5(CR853286|pid:none) Zebrafish DNA sequence from clone ... 37 1.3
AP003339_11(AP003339|pid:none) Oryza sativa Japonica Group genom... 37 1.3
A30891(A30891)regulatory protein rpt-1 - mouse 37 1.3
AM479696_3(AM479696|pid:none) Vitis vinifera contig VV78X145626.... 37 1.3
BC065891_1(BC065891|pid:none) Danio rerio zgc:136713, mRNA (cDNA... 37 1.3
AF079838_1(AF079838|pid:none) Drosophila melanogaster TRAF6 (Tra... 37 1.3
AL031326_15(AL031326|pid:none) Arabidopsis thaliana DNA chromoso... 37 1.3
AY274341_1(AY274341|pid:none) Drosophila simulans strain DSR iso... 37 1.3
FB802533_1(FB802533|pid:none) Sequence 21806 from Patent WO20080... 37 1.3
DQ301466_1(DQ301466|pid:none) Homo sapiens voucher GM10975 TRIM5... 37 1.3
BT066591_1(BT066591|pid:none) Zea mays full-length cDNA clone ZM... 37 1.3
FB746590_1(FB746590|pid:none) Sequence 57 from Patent EP1903111. 37 1.3
AF169796_1(AF169796|pid:none) Homo sapiens zinc finger DNA bindi... 37 1.3
AF220016_1(AF220016|pid:none) Mus musculus tripartite motif prot... 37 1.3
CP001324_582(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 37 1.3
DQ652687_1(DQ652687|pid:none) Arabidopsis thaliana clone 0000014... 37 1.3
DQ487563_1(DQ487563|pid:none) Arabidopsis thaliana clone 0000014... 37 1.3
DQ301463_1(DQ301463|pid:none) Homo sapiens voucher NA17320 TRIM5... 37 1.3
DQ301456_1(DQ301456|pid:none) Homo sapiens voucher GM10968 TRIM5... 37 1.3
BC115235_1(BC115235|pid:none) Danio rerio zgc:136713, mRNA (cDNA... 37 1.3
EU955705_1(EU955705|pid:none) Zea mays clone 1542922 zinc finger... 37 1.3
AK172348_1(AK172348|pid:none) Mus musculus activated spleen cDNA... 37 1.3
EU956617_1(EU956617|pid:none) Zea mays clone 1568194 ubiquitin-p... 37 1.3
(Q91VT1) RecName: Full=E3 SUMO-protein ligase NSE2; EC=... 37 1.3
(Q5C8T6) RecName: Full=Tripartite motif-containing protein 5; ... 37 1.7
BC170678_1(BC170678|pid:none) Xenopus tropicalis ring finger and... 37 1.7
AL161533_31(AL161533|pid:none) Arabidopsis thaliana DNA chromoso... 37 1.7
EU973922_1(EU973922|pid:none) Zea mays clone 424283 protein bind... 37 1.7
AK118613_1(AK118613|pid:none) Arabidopsis thaliana At3g54790 mRN... 37 1.7
(Q9SFX2) RecName: Full=U-box domain-containing protein 43; ... 37 1.7
AM463545_1(AM463545|pid:none) Vitis vinifera contig VV78X191796.... 37 1.7
CU928167_216(CU928167|pid:none) Kluyveromyces thermotolerans str... 37 1.7
AC137821_26(AC137821|pid:none) Medicago truncatula clone mth2-15... 37 1.7
AC148290_20(AC148290|pid:none) Medicago truncatula chromosome 2 ... 37 1.7
AL080318_3(AL080318|pid:none) Arabidopsis thaliana DNA chromosom... 37 1.7
BC161699_1(BC161699|pid:none) Xenopus laevis hypothetical protei... 37 1.7
(Q8GWV5) RecName: Full=U-box domain-containing protein 3; ... 37 1.7
AF220026_1(AF220026|pid:none) Homo sapiens tripartite motif prot... 36 2.2
(Q80U04) RecName: Full=E3 ubiquitin-protein ligase Praja2; ... 36 2.2
FM992690_230(FM992690|pid:none) Candida dubliniensis CD36 chromo... 36 2.2
(Q6AZZ1) RecName: Full=Tripartite motif-containing protein 68; A... 36 2.2
AK122282_1(AK122282|pid:none) Mus musculus mRNA for mKIAA0438 pr... 36 2.2
CP000583_65(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ... 36 2.2
AY059775_1(AY059775|pid:none) Arabidopsis thaliana unknown prote... 36 2.2
CP001328_638(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 36 2.2
EU961355_1(EU961355|pid:none) Zea mays clone 234750 hypothetical... 36 2.2
BC021258_1(BC021258|pid:none) Homo sapiens tripartite motif-cont... 36 2.2
AP004048_21(AP004048|pid:none) Oryza sativa Japonica Group genom... 36 2.2
AF220027_1(AF220027|pid:none) Homo sapiens tripartite motif prot... 36 2.2
(Q9LM76) RecName: Full=U-box domain-containing protein 44; ... 36 2.2
DQ301453_1(DQ301453|pid:none) Homo sapiens voucher GM11375 TRIM5... 36 2.2
DQ301464_1(DQ301464|pid:none) Homo sapiens voucher NA17311 TRIM5... 36 2.2
CR749579_1(CR749579|pid:none) Homo sapiens mRNA; cDNA DKFZp779F2... 36 2.2
AK069888_1(AK069888|pid:none) Oryza sativa Japonica Group cDNA c... 36 2.2
DQ301469_1(DQ301469|pid:none) Homo sapiens voucher NA17080 TRIM5... 36 2.2
AY220483_1(AY220483|pid:none) Nicotiana tabacum Avr9/Cf-9 rapidl... 36 2.2
CR382135_621(CR382135|pid:none) Debaryomyces hansenii strain CBS... 36 2.2
U67953_1(U67953|pid:none) Caenorhabditis elegans cosmid ZC13, co... 36 2.2
DQ301462_1(DQ301462|pid:none) Homo sapiens voucher NA17310 TRIM5... 36 2.2
(Q6NRG0) RecName: Full=E3 ubiquitin-protein ligase RNF8 B; ... 36 2.2
AC025808_3(AC025808|pid:none) Genomic sequence for Arabidopsis t... 36 2.2
BC150108_1(BC150108|pid:none) Bos taurus praja ring finger 2, mR... 36 2.2
(Q8VC56) RecName: Full=E3 ubiquitin-protein ligase RNF8; ... 36 2.2
DQ415921_17(DQ415921|pid:none) Cleome spinosa clone BAC Cs2, com... 36 2.2
DQ301450_1(DQ301450|pid:none) Homo sapiens voucher GM10493 TRIM5... 36 2.2
BC168076_1(BC168076|pid:none) Xenopus tropicalis cDNA clone MGC:... 36 2.2
AC144514_21(AC144514|pid:none) Medicago truncatula clone mth2-12... 36 2.2
AY081949_1(AY081949|pid:none) Homo sapiens tripartite motif prot... 36 2.2
DQ301445_1(DQ301445|pid:none) Homo sapiens voucher GM10470 TRIM5... 36 2.2
AK292074_1(AK292074|pid:none) Homo sapiens cDNA FLJ77582 complet... 36 2.2
DQ301454_1(DQ301454|pid:none) Homo sapiens voucher NA13597 TRIM5... 36 2.2
CR860713_1(CR860713|pid:none) Pongo abelii mRNA; cDNA DKFZp459D0... 36 2.2
AF360739_1(AF360739|pid:none) Homo sapiens SSA protein SS-56 (SS... 36 2.2
(Q63364) RecName: Full=E3 ubiquitin-protein ligase Praja2; ... 36 2.2
(Q54S31) RecName: Full=Peroxisome biogenesis factor 10; AltName:... 36 2.2
AB362928_1(AB362928|pid:none) Homo sapiens TRIM5 mRNA for tripar... 36 2.2
(Q5D7J1) RecName: Full=Tripartite motif-containing protein 5; ... 36 2.2
AP005871_22(AP005871|pid:none) Oryza sativa Japonica Group genom... 36 2.2
AY883974_1(AY883974|pid:none) Gorilla gorilla Williams-Beuren sy... 36 2.2
EU963414_1(EU963414|pid:none) Zea mays clone 262031 zinc finger,... 36 2.2
(Q86XT4) RecName: Full=Tripartite motif-containing protein 50; ... 36 2.2
EF086824_1(EF086824|pid:none) Picea sitchensis clone WS02711_F11... 36 2.2
DQ301444_1(DQ301444|pid:none) Homo sapiens voucher GM10469 TRIM5... 36 2.2
BT082979_1(BT082979|pid:none) Anoplopoma fimbria clone afim-evh-... 36 2.2
AY843510_1(AY843510|pid:none) Gorilla gorilla TRIM5alpha (TRIM5)... 36 2.2
BC030826_1(BC030826|pid:none) Homo sapiens praja ring finger 2, ... 36 2.2
AL391144_20(AL391144|pid:none) Arabidopsis thaliana DNA chromoso... 36 2.2
AX400074_1(AX400074|pid:none) Sequence 245 from Patent WO0218424. 36 2.2
AM469216_4(AM469216|pid:none) Vitis vinifera contig VV78X201907.... 36 2.2
AF119793_1(AF119793|pid:none) Drosophila melanogaster TNF-recept... 36 2.2
(Q5C8T8) RecName: Full=Tripartite motif-containing protein 5; ... 36 2.8
AE014297_367(AE014297|pid:none) Drosophila melanogaster chromoso... 36 2.8
EU965227_1(EU965227|pid:none) Zea mays clone 284641 hypothetical... 36 2.8
AK067053_1(AK067053|pid:none) Oryza sativa Japonica Group cDNA c... 36 2.8
EU974595_1(EU974595|pid:none) Zea mays clone 453928 RING finger ... 36 2.8
CU638743_227(CU638743|pid:none) Podospora anserina genomic DNA c... 36 2.8
AM270413_13(AM270413|pid:none) Aspergillus niger contig An18c021... 36 2.8
AP002066_3(AP002066|pid:none) Arabidopsis thaliana genomic DNA, ... 36 2.8
FN357920_15(FN357920|pid:none) Schistosoma mansoni genome sequen... 36 2.8
(Q2YEM8) RecName: Full=Tripartite motif-containing protein 5; ... 36 2.8
AY843513_1(AY843513|pid:none) Pongo pygmaeus TRIM5alpha (TRIM5) ... 36 2.8
AC005496_5(AC005496|pid:none) Arabidopsis thaliana chromosome 2 ... 36 2.8
AC140545_22(AC140545|pid:none) Medicago truncatula clone mth2-11... 36 2.8
AP003449_4(AP003449|pid:none) Oryza sativa Japonica Group genomi... 36 2.8
(P54860) RecName: Full=Ubiquitin conjugation factor E4; AltName:... 36 2.8
EF568108_117(EF568108|pid:none) Glossina pallidipes salivary gla... 36 2.8
AB268588_6(AB268588|pid:none) Gallus gallus genes, MHC region, p... 36 2.8
EF551345_1(EF551345|pid:none) Pongo pygmaeus tripartite motif-co... 36 2.8
U22154_1(U22154|pid:none) Saccharomyces cerevisiae ubiquitin fus... 36 2.8
EU246943_3(EU246943|pid:none) Monodon baculovirus BamHI fragment... 36 2.8
CR388403_1(CR388403|pid:none) Zebrafish DNA sequence from clone ... 36 2.8
EU969915_1(EU969915|pid:none) Zea mays clone 337224 RHC1A mRNA, ... 36 2.8
CT005245_53(CT005245|pid:none) Leishmania major strain Friedlin,... 36 2.8
(Q2YEM9) RecName: Full=Tripartite motif-containing protein 5; ... 36 2.8
AE014297_366(AE014297|pid:none) Drosophila melanogaster chromoso... 36 2.8
AF063866_27(AF063866|pid:none) Melanoplus sanguinipes entomopoxv... 36 2.8
DQ652655_1(DQ652655|pid:none) Arabidopsis thaliana clone 0000011... 36 2.8
AY085724_1(AY085724|pid:none) Arabidopsis thaliana clone 17402 m... 36 2.8
EU956162_1(EU956162|pid:none) Zea mays clone 1558311 RHC1A mRNA,... 36 2.8
(Q9LQM2) RecName: Full=RING-H2 finger protein ATL1F; Flags: Prec... 36 2.8
FB802585_1(FB802585|pid:none) Sequence 21858 from Patent WO20080... 36 2.8
DQ993255_1(DQ993255|pid:none) Meleagris gallopavo major histocom... 36 2.8
AK066326_1(AK066326|pid:none) Oryza sativa Japonica Group cDNA c... 36 2.8
AM430844_5(AM430844|pid:none) Vitis vinifera contig VV78X248545.... 36 2.8
BC155229_1(BC155229|pid:none) Danio rerio zgc:174633, mRNA (cDNA... 36 2.8
AC087182_2(AC087182|pid:none) Oryza sativa chromosome 10 BAC OSJ... 35 3.7
FN392322_612(FN392322|pid:none) Pichia pastoris GS115 chromosome... 35 3.7
BC031540_1(BC031540|pid:none) Mus musculus tripartite motif-cont... 35 3.7
EU952879_1(EU952879|pid:none) Zea mays clone 1292250 hypothetica... 35 3.7
(Q9LSW9) RecName: Full=RING-H2 finger protein ATL5K; AltName: Fu... 35 3.7
(Q8NHY2) RecName: Full=E3 ubiquitin-protein ligase RFWD2; ... 35 3.7
(Q9R1A8) RecName: Full=E3 ubiquitin-protein ligase RFWD2; ... 35 3.7
AB045121_1(AB045121|pid:none) Oryza sativa Japonica Group RRF1 m... 35 3.7
(P30631) RecName: Full=Uncharacterized RING finger protein ZK637... 35 3.7
(O76064) RecName: Full=E3 ubiquitin-protein ligase RNF8; ... 35 3.7
AY740617_1(AY740617|pid:none) Pan troglodytes verus TRIM5 alpha ... 35 3.7
T25874(T25874)hypothetical protein T09B4.10 - Caenorhabditis ele... 35 3.7
AK298319_1(AK298319|pid:none) Homo sapiens cDNA FLJ50824 complet... 35 3.7
AK008329_1(AK008329|pid:none) Mus musculus adult male small inte... 35 3.7
(Q1XHU0) RecName: Full=Tripartite motif-containing protein 39; ... 35 3.7
AK059108_1(AK059108|pid:none) Oryza sativa Japonica Group cDNA c... 35 3.7
AB110937_1(AB110937|pid:none) Homo sapiens TRIM39 gene for TRIM3... 35 3.7
AF079181_1(AF079181|pid:none) Arabidopsis thaliana RING-H2 finge... 35 3.7
EF551343_1(EF551343|pid:none) Nomascus leucogenys tripartite mot... 35 3.7
AL662795_3(AL662795|pid:none) Human DNA sequence from clone XXba... 35 3.7
FB802525_1(FB802525|pid:none) Sequence 21798 from Patent WO20080... 35 3.7
(Q9M0R4) RecName: Full=Putative RING-H2 finger protein ATL4D; Fl... 35 3.7
AL662795_2(AL662795|pid:none) Human DNA sequence from clone XXba... 35 3.7
AP008216_900(AP008216|pid:none) Oryza sativa (japonica cultivar-... 35 3.7
(O64763) RecName: Full=RING-H2 finger protein ATL2G; AltName: Fu... 35 3.7
AC003000_2(AC003000|pid:none) Arabidopsis thaliana chromosome 2 ... 35 3.7
EF190323_1(EF190323|pid:none) Triticum aestivum RING-H2 zinc fin... 35 3.7
AL662795_4(AL662795|pid:none) Human DNA sequence from clone XXba... 35 3.7
AK220298_1(AK220298|pid:none) Mus musculus mRNA for mKIAA4179 pr... 35 3.7
(Q91YL2) RecName: Full=RING finger protein 126; &AK154781_1(AK1... 35 3.7
BC158002_1(BC158002|pid:none) Mus musculus ring finger and WD re... 35 3.7
DQ059122_1(DQ059122|pid:none) Arabidopsis thaliana RING finger f... 35 3.7
AC120307_22(AC120307|pid:none) Oryza sativa (japonica cultivar-g... 35 3.7
AE014298_324(AE014298|pid:none) Drosophila melanogaster chromoso... 35 3.7
AM487276_1(AM487276|pid:none) Vitis vinifera contig VV78X159983.... 35 3.7
AB008518_1(AB008518|pid:none) Arabidopsis thaliana RMA1 mRNA, co... 35 3.7
FJ236699_1(FJ236699|pid:none) Sus scrofa RAD18-like protein (RAD... 35 3.7
(Q9SW11) RecName: Full=U-box domain-containing protein 35; AltNa... 35 3.7
BC099810_1(BC099810|pid:none) Rattus norvegicus ring finger prot... 35 3.7
AP009557_5(AP009557|pid:none) Sus scrofa genomic DNA, chromosome... 35 3.7
CR954204_434(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 35 3.7
BC110242_1(BC110242|pid:none) Bos taurus polycomb group ring fin... 35 3.7
AK229146_1(AK229146|pid:none) Arabidopsis thaliana mRNA for hypo... 35 3.7
AC137836_4(AC137836|pid:none) Medicago truncatula clone mth2-10f... 35 3.7
AL161538_17(AL161538|pid:none) Arabidopsis thaliana DNA chromoso... 35 3.7
(Q6MFZ5) RecName: Full=Tripartite motif-containing protein 39; A... 35 3.7
(Q5R4I2) RecName: Full=E3 ubiquitin-protein ligase RNF8; ... 35 3.7
(Q9ESN2) RecName: Full=Tripartite motif-containing protein 39; A... 35 3.7
>(Q84TG3) RecName: Full=U-box domain-containing protein 23;
EC=6.3.2.-; AltName: Full=Plant U-box protein 23;
&AK227343_1(AK227343|pid:none)
&BT005829_1(BT005829|pid:none)
Length = 411
Score = 53.9 bits (128), Expect = 1e-05
Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Frame = +3
Query: 27 MDNDI-----LLDPITMEIMSDPVISKLCGHSFSNDSIIVWL--QKKETCPICNIKITTN 185
MD +I L PI++EIM DPVI G ++ DSI WL KK +CP+ IT
Sbjct: 6 MDEEIEIPPFFLCPISLEIMKDPVIVST-GITYDRDSIEKWLFAGKKNSCPVTKQDITDA 64
Query: 186 DLTPNYSLRDIIK 224
DLTPN++LR +I+
Sbjct: 65 DLTPNHTLRRLIQ 77
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,394,892,090
Number of extensions: 23744781
Number of successful extensions: 60607
Number of sequences better than 10.0: 688
Number of HSP's gapped: 60487
Number of HSP's successfully gapped: 691
Length of query: 376
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 246
Effective length of database: 624,409,729
Effective search space: 153604793334
Effective search space used: 153604793334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
2 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |