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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06086-1
Contig ID Contig-U06086-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06086-1 (Contig-U06086-1Q) /CSM_Contig/Contig-U06086-1Q.Seq.d
ATAATNAGATTTTATTCAGTTGGCTCAATTATTCTTTAGAGAGCAAAACG
TTGATCCACCAGCATCACTTTACACAATAGATAATACAATCGCAAACATA
AAGAGTTCATTAGCTGAAGTTATCAAACCAAATCAAGATCCAAGTTCATT
AACTTTCCGTTATATGATGATCGTTGATCCTTCAGAGAATGAATCATCCA
TTTCAATTCTAAAAGAGATTGGTATTGAAAATTTAACAATTGTTAGAGTT
GGTGGTTTTGAAAATGATAGTTCAGAGGAATCATTGGTAGAATGTGTTTC
AACTATTAAATCAATTATGGAAACTGGTGGTACCGTTGTATTGGTCAATA
GTGAAAAGATTGATTCATGTTTCTATGAAGTTTTCAATAGATACTTTATT
TTAACACCTTCTTCAGAACATCGTGATCGTTTACAAATGGTTGCAAATAT
TAGTTTTGGTACTCATTCAGTATTTTGTACAGTTCATCCAGACTTTAAAG
TTATCATTCATATGCCAATGTCAAGATTAAAGAATACTCAATTACCTTGG
TTAAATAGATTCGAAAAGTATACAGTATCAATTGATTTATTAACTCAAGA
ATTCATTAGTAAGCATCAATCAAGTACCGATCTATTTAATAACCTTGTGA
AGTACTCCAATCATTTCGTTGATACACTTCATAATAAAGCAAGTAAAAAA
TCATTATTAGCTGGATTTTCTTCAACTGAAACTTGTTCAAGTTTAATTTA
TCAATTCTTTAAAAATTATGATATGGTTTCAACAACTACCAATTNTAAAA
ANAGAGAATTTTATAAATTATTATCAAGTTCACCAACATCGACAGCAACT
TCAATTAAAAATGAACCACAAACATTATTCAATTTTAAATTATTACAAAT
TGCAAAACCAGAATCAATCATTCGTATTAAAGATTCAATTTATCCAATTA
ATTATTTAAAGGAATATTTTATCAATCAAGAACATTTTAGNATAGTTAGA
TTTTTAAAGAATTTATTTACAACTAAATATTCAATGAATGAATATATCTC
AAATAAATGGGTAATTTTCACTAGAACTTCTTTGTCATTAACTTCCNTTA
AAGATGGTGAAGTTTTACNTGAAATTTTAGGTGATAATTTAGTTAGATCA
ATTATAAATAAGAAATTGGTTTCAAAAGATGATGATGGNGATAATGAAAA
TCTCGATCAAATAATGTTAGAAATCAAATAAAAAATAAATAAAAAAAAA
Gap no gap
Contig length 1249
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3106452
End point 3107675
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U06086
List of clone(s) 

est1=VFD691E,1,1250
Translated Amino Acid sequence 
*XDFIQLAQLFFREQNVDPPASLYTIDNTIANIKSSLAEVIKPNQDPSSLTFRYMMIVDP
SENESSISILKEIGIENLTIVRVGGFENDSSEESLVECVSTIKSIMETGGTVVLVNSEKI
DSCFYEVFNRYFILTPSSEHRDRLQMVANISFGTHSVFCTVHPDFKVIIHMPMSRLKNTQ
LPWLNRFEKYTVSIDLLTQEFISKHQSSTDLFNNLVKYSNHFVDTLHNKASKKSLLAGFS
STETCSSLIYQFFKNYDMVSTTTNXKXREFYKLLSSSPTSTATSIKNEPQTLFNFKLLQI
AKPESIIRIKDSIYPINYLKEYFINQEHFXIVRFLKNLFTTKYSMNEYISNKWVIFTRTS
LSLTSXKDGEVLXEILGDNLVRSIINKKLVSKDDDGDNENLDQIMLEIK*kinkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ixrfysvgsiil*rakr*stsitlhnr*ynrkhkefis*syqtksrskfinfplyddr*s
fre*iihfnskrdwy*kfnnc*swwf*k**frgiigrmcfny*inygnwwyrcigq**kd
*fmfl*sfq*ilyfntffrts*sftngcky*fwysfsilysssrl*syhsyanvkikeys
itlvk*irkvysin*finsrih**asikyrsi**pcevlqsfr*yts**sk*kiiiswif
fn*nlfkfnlsil*kl*ygfnnyqx*kxril*iiikftnidsnfn*k*ttniiqf*iitn
cktrinhsy*rfnlsn*lfkgifyqsrtf*xs*ifkefiyn*ifne*iylk*mgnfh*nf
fvinfx*rw*sft*nfr**fs*inyk*eigfkr**wx**ksrsnnvrnqiknk*kk


Frame B:
*XDFIQLAQLFFREQNVDPPASLYTIDNTIANIKSSLAEVIKPNQDPSSLTFRYMMIVDP
SENESSISILKEIGIENLTIVRVGGFENDSSEESLVECVSTIKSIMETGGTVVLVNSEKI
DSCFYEVFNRYFILTPSSEHRDRLQMVANISFGTHSVFCTVHPDFKVIIHMPMSRLKNTQ
LPWLNRFEKYTVSIDLLTQEFISKHQSSTDLFNNLVKYSNHFVDTLHNKASKKSLLAGFS
STETCSSLIYQFFKNYDMVSTTTNXKXREFYKLLSSSPTSTATSIKNEPQTLFNFKLLQI
AKPESIIRIKDSIYPINYLKEYFINQEHFXIVRFLKNLFTTKYSMNEYISNKWVIFTRTS
LSLTSXKDGEVLXEILGDNLVRSIINKKLVSKDDDGDNENLDQIMLEIK*kinkkk


Frame C:
nxilfswlnyslesktlihqhhftq*iiqsqt*rvh*lklsnqikiqvh*lsvi**slil
qrmnhpfqf*krlvlki*qllelvvlkmivqrnhw*nvfqllnqlwklvvplywsivkrl
ihvsmkfsidtlf*hllqnivivykwlqilvlvliqyfvqfiqtlklsficqcqd*riln
ylg*idsksiqyqliy*lknslvsinqvpiylitl*stpiislihfiikqvknhy*ldfl
qlklvqv*finslkimiwfqqlpixkxenfinyyqvhqhrqqlqlkmnhkhysilnyykl
qnqnqsfvlkiqfiqlii*rnilsiknilx*ldf*riylqlniq*mnisqing*fslell
ch*lplkmvkfyxkf*vii*ldql*irnwfqkmmmximkisik*c*ksnkk*ikk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06086-1 (Contig-U06086-1Q)
/CSM_Contig/Contig-U06086-1Q.Seq.d
         (1249 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06086-1 (Contig-U06086-1Q) /CSM_Contig/Conti...  2387  0.0
Contig-U03730-1 (Contig-U03730-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12845-1 (Contig-U12845-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14815-1 (Contig-U14815-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U12277-1 (Contig-U12277-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11807-1 (Contig-U11807-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U14349-1 (Contig-U14349-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U09520-1 (Contig-U09520-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U08873-1 (Contig-U08873-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U04543-1 (Contig-U04543-1Q) /CSM_Contig/Conti...    36  0.088

>Contig-U06086-1 (Contig-U06086-1Q) /CSM_Contig/Contig-U06086-1Q.Seq.d
          Length = 1249

 Score = 2387 bits (1204), Expect = 0.0
 Identities = 1225/1225 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    ataatnagattttattcagttggctcaattattctttagagagcaaaacgttgatccacc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    ataatnagattttattcagttggctcaattattctttagagagcaaaacgttgatccacc 60

                                                                        
Query: 61   agcatcactttacacaatagataatacaatcgcaaacataaagagttcattagctgaagt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   agcatcactttacacaatagataatacaatcgcaaacataaagagttcattagctgaagt 120

                                                                        
Query: 121  tatcaaaccaaatcaagatccaagttcattaactttccgttatatgatgatcgttgatcc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  tatcaaaccaaatcaagatccaagttcattaactttccgttatatgatgatcgttgatcc 180

                                                                        
Query: 181  ttcagagaatgaatcatccatttcaattctaaaagagattggtattgaaaatttaacaat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  ttcagagaatgaatcatccatttcaattctaaaagagattggtattgaaaatttaacaat 240

                                                                        
Query: 241  tgttagagttggtggttttgaaaatgatagttcagaggaatcattggtagaatgtgtttc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tgttagagttggtggttttgaaaatgatagttcagaggaatcattggtagaatgtgtttc 300

                                                                        
Query: 301  aactattaaatcaattatggaaactggtggtaccgttgtattggtcaatagtgaaaagat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  aactattaaatcaattatggaaactggtggtaccgttgtattggtcaatagtgaaaagat 360

                                                                        
Query: 361  tgattcatgtttctatgaagttttcaatagatactttattttaacaccttcttcagaaca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tgattcatgtttctatgaagttttcaatagatactttattttaacaccttcttcagaaca 420

                                                                        
Query: 421  tcgtgatcgtttacaaatggttgcaaatattagttttggtactcattcagtattttgtac 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  tcgtgatcgtttacaaatggttgcaaatattagttttggtactcattcagtattttgtac 480

                                                                        
Query: 481  agttcatccagactttaaagttatcattcatatgccaatgtcaagattaaagaatactca 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  agttcatccagactttaaagttatcattcatatgccaatgtcaagattaaagaatactca 540

                                                                        
Query: 541  attaccttggttaaatagattcgaaaagtatacagtatcaattgatttattaactcaaga 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  attaccttggttaaatagattcgaaaagtatacagtatcaattgatttattaactcaaga 600

                                                                        
Query: 601  attcattagtaagcatcaatcaagtaccgatctatttaataaccttgtgaagtactccaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  attcattagtaagcatcaatcaagtaccgatctatttaataaccttgtgaagtactccaa 660

                                                                        
Query: 661  tcatttcgttgatacacttcataataaagcaagtaaaaaatcattattagctggattttc 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  tcatttcgttgatacacttcataataaagcaagtaaaaaatcattattagctggattttc 720

                                                                        
Query: 721  ttcaactgaaacttgttcaagtttaatttatcaattctttaaaaattatgatatggtttc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  ttcaactgaaacttgttcaagtttaatttatcaattctttaaaaattatgatatggtttc 780

                                                                        
Query: 781  aacaactaccaattntaaaaanagagaattttataaattattatcaagttcaccaacatc 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  aacaactaccaattntaaaaanagagaattttataaattattatcaagttcaccaacatc 840

                                                                        
Query: 841  gacagcaacttcaattaaaaatgaaccacaaacattattcaattttaaattattacaaat 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  gacagcaacttcaattaaaaatgaaccacaaacattattcaattttaaattattacaaat 900

                                                                        
Query: 901  tgcaaaaccagaatcaatcattcgtattaaagattcaatttatccaattaattatttaaa 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  tgcaaaaccagaatcaatcattcgtattaaagattcaatttatccaattaattatttaaa 960

                                                                        
Query: 961  ggaatattttatcaatcaagaacattttagnatagttagatttttaaagaatttatttac 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ggaatattttatcaatcaagaacattttagnatagttagatttttaaagaatttatttac 1020

                                                                        
Query: 1021 aactaaatattcaatgaatgaatatatctcaaataaatgggtaattttcactagaacttc 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aactaaatattcaatgaatgaatatatctcaaataaatgggtaattttcactagaacttc 1080

                                                                        
Query: 1081 tttgtcattaacttccnttaaagatggtgaagttttacntgaaattttaggtgataattt 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tttgtcattaacttccnttaaagatggtgaagttttacntgaaattttaggtgataattt 1140

                                                                        
Query: 1141 agttagatcaattataaataagaaattggtttcaaaagatgatgatggngataatgaaaa 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 agttagatcaattataaataagaaattggtttcaaaagatgatgatggngataatgaaaa 1200

                                     
Query: 1201 tctcgatcaaataatgttagaaatc 1225
            |||||||||||||||||||||||||
Sbjct: 1201 tctcgatcaaataatgttagaaatc 1225


>Contig-U03730-1 (Contig-U03730-1Q) /CSM_Contig/Contig-U03730-1Q.Seq.d
          Length = 794

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 123 tcaaaccaaatcaagatccaa 143
           |||||||||||||||||||||
Sbjct: 631 tcaaaccaaatcaagatccaa 651


>Contig-U12845-1 (Contig-U12845-1Q) /CSM_Contig/Contig-U12845-1Q.Seq.d
          Length = 572

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 885 ttaaattattacaaattgcaaaac 908
           |||||||||||||||||| |||||
Sbjct: 283 ttaaattattacaaattgaaaaac 306


 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 218 attggtattgaaaatt 233
           ||||||||||||||||
Sbjct: 438 attggtattgaaaatt 453


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,134
Number of Sequences: 6905
Number of extensions: 22134
Number of successful extensions: 2539
Number of sequences better than 10.0: 239
length of query: 1249
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1233
effective length of database: 5,564,391
effective search space: 6860894103
effective search space used: 6860894103
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 7
Homology vs DNA 
Query= Contig-U06086-1 (Contig-U06086-1Q) /CSM_Contig/Contig-U06086-1Q.Seq.d
         (1249 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...  2313   0.0    1
(BJ412504) Dictyostelium discoideum cDNA clone:ddv8e24, 5' e...  1255   0.0    1
(BJ430793) Dictyostelium discoideum cDNA clone:ddv8e24, 3' e...  1215   0.0    1
(AE017245) Mycoplasma synoviae 53, complete genome.                36   0.003  18
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.034  13
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         32   0.075  20
(AL023828) Caenorhabditis elegans YAC Y17G7B.                      40   0.11   8
(ER358221) 1092351324530 Global-Ocean-Sampling_GS-34-01-01-1...    36   0.12   3
(CU207317) Mouse DNA sequence from clone CH29-502J5 on chrom...    50   0.20   1
(AC158648) Mus musculus 6 BAC RP23-431M16 (Roswell Park Canc...    50   0.20   1
(AC153574) Mus musculus 6 BAC RP23-265B8 (Roswell Park Cance...    50   0.20   1
(AP009518) Solanum lycopersicum DNA, chromosome 8, clone: C0...    50   0.20   1
(CQ869727) Sequence 148 from Patent WO2004074320.                  50   0.20   1
(AL132633) Human chromosome 14 DNA sequence BAC C-2216L14 of...    40   0.28   4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.40   18
(AI332101) fa94e03.y1 zebrafish fin day1 regeneration Danio ...    46   0.47   2
(DE136408) Oryzias latipes DNA, forward end of BAC clone: Mn...    44   0.63   2
(CT610228) Danio rerio EST, clone ZF_mu_146o17 5'.                 46   0.80   2
(CR450812) Zebrafish DNA sequence from clone CH211-161H7.          48   0.81   1
(AL688802) Fugu rubripes GSS sequence, clone B303D07aB1.           48   0.81   1
(DH121696) Oryzias latipes Fosmid clone:GOLWFno386_e09, forw...    48   0.81   1
(CN213617) 27220 Suspension culture Solanum tuberosum cDNA, ...    48   0.81   1
(CK851149) 11230 Stolon Solanum tuberosum cDNA, mRNA sequence.     48   0.81   1
(CK716669) 16372 Swollen Stolon Solanum tuberosum cDNA, mRNA...    48   0.81   1
(CK277118) EST723196 potato abiotic stress cDNA library Sola...    48   0.81   1
(CK277117) EST723195 potato abiotic stress cDNA library Sola...    48   0.81   1
(CK276936) EST723014 potato abiotic stress cDNA library Sola...    48   0.81   1
(CK276935) EST723013 potato abiotic stress cDNA library Sola...    48   0.81   1
(CK276100) EST722178 potato abiotic stress cDNA library Sola...    48   0.81   1
(CK276099) EST722177 potato abiotic stress cDNA library Sola...    48   0.81   1
(BF459542) 060F11 Mature tuber lambda ZAP Solanum tuberosum ...    48   0.81   1
(BF153463) 024G04 Mature tuber lambda ZAP Solanum tuberosum ...    48   0.81   1
(FH547657) CHO_OF4513xp14f1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   0.91   2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   1.0    19
(AY988601) Nipah virus from Bangladesh, complete genome.           44   1.0    4
(AF149413) Arabidopsis thaliana BAC T1N24.                         44   1.0    4
(CS468878) Sequence 69 from Patent EP1748080.                      32   1.4    12
(CS468877) Sequence 68 from Patent EP1748080.                      32   1.4    12
(CS419355) Sequence 69 from Patent WO2006094836.                   32   1.4    12
(CS419354) Sequence 68 from Patent WO2006094836.                   32   1.4    12
(AM636238) Entamoeba dispar GSS, clone dispar35d01.q1k.            34   1.5    4
(BX511028) Zebrafish DNA sequence from clone DKEY-161N17 in ...    36   1.6    2
(AF007261) Reclinomonas americana mitochondrion, complete ge...    32   1.7    2
(AU264555) Dictyostelium discoideum vegetative cDNA clone:VS...    42   1.8    2
(AC137905) Mus musculus chromosome 15, clone RP23-334B11, co...    38   1.8    6
(AB113317) Amblyomma triguttatum mitochondrial DNA, complete...    34   1.9    2
(CT531391) A BAC library has been constructed from cultivar ...    34   1.9    3
(CT536760) A BAC library has been constructed from cultivar ...    34   2.0    3
(AC130077) Rattus norvegicus clone CH230-165L20, *** SEQUENC...    36   2.1    7
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   2.2    19
(AC119061) Bos taurus clone RP42-521B3, WORKING DRAFT SEQUEN...    36   2.3    8
(AL136219) Human DNA sequence from clone RP11-149B7 on chrom...    46   2.3    6
(ER367417) 1093022075538 Global-Ocean-Sampling_GS-34-01-01-1...    36   2.3    3
(CU845072) A BAC library has been constructed from PN40024 g...    38   2.7    2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   2.8    16
(CT499608) A BAC library has been constructed from cultivar ...    38   2.8    2
(BH667547) BOMHJ90TR BO_2_3_KB Brassica oleracea genomic clo...    40   2.8    2
(DY590289) GUTF074975M24 POSSUM_01-POSSUM-GUT-2KB Trichosuru...    36   2.9    2
(CT504385) A BAC library has been constructed from cultivar ...    38   3.0    2
(BX005275) Zebrafish DNA sequence from clone DKEY-118J18 in ...    46   3.2    1
(AC183287) Pan troglodytes chromosome X clone CH251-59K17 ma...    46   3.2    1
(AL445672) Human DNA sequence from clone RP11-66D1 on chromo...    46   3.2    1
(AL023875) Human DNA sequence from clone RP5-1044O17 on chro...    46   3.2    1
(AC008710) Homo sapiens chromosome 5 clone CTB-7E3, complete...    46   3.2    1
(AC136073) Rattus norvegicus clone CH230-376A13, *** SEQUENC...    46   3.2    1
(AC121669) Rattus norvegicus clone CH230-357E16, WORKING DRA...    46   3.2    1
(AC118525) Rattus norvegicus clone CH230-216B4, *** SEQUENCI...    46   3.2    1
(AC112167) Homo sapiens chromosome 5 clone CTB-182G4, WORKIN...    46   3.2    1
(AC109969) Rattus norvegicus clone CH230-332B7, *** SEQUENCI...    46   3.2    1
(AC107502) Rattus norvegicus clone CH230-127F6, WORKING DRAF...    46   3.2    1
(CU928249) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.2    1
(CU606972) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.2    1
(AL390064) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   3.2    1
(AC231626) Pan troglodytes chromosome X clone CH251-663D3 ma...    46   3.2    1
(CR597960) full-length cDNA clone CS0DI008YJ04 of Placenta C...    46   3.2    1
(BH558187) BOGVU93TR BOGV Brassica oleracea genomic clone BO...    46   3.2    1
(ER316951) 1092344150508 Global-Ocean-Sampling_GS-34-01-01-1...    46   3.2    1
(EK005137) 1092344130793 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.2    1
(EK004576) 1092343429594 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.2    1
(DH327531) Oryzias latipes Fosmid clone:GOLWFno690_k15, forw...    46   3.2    1
(CT562554) A BAC library has been constructed from cultivar ...    46   3.2    1
(ES791780) UFL_547_33 Cotton fiber 0-10 day post anthesis Go...    46   3.2    1
(CF920765) gmrhRww3-01_D01_1_009 Soybean root hair subtracte...    46   3.2    1
(BX377615) human full-length cDNA 3-PRIME end of clone CS0DI...    46   3.2    1
(EF643192) Racinaea fraseri voucher FRP 90-1326-2 rps16 gene...    36   3.3    2
(CV696071) SJS_023_04.T7 SJS Schistosoma japonicum cDNA, mRN...    44   3.3    2
(CV695174) SJS_017_32.T7 SJS Schistosoma japonicum cDNA, mRN...    44   3.4    2
(AY614192) Tillandsia cacticola MB-44 rps16 gene, intron; ch...    36   3.4    2
(AY614191) Tillandsia marconae MB-98 rps16 gene, intron; chl...    36   3.4    2
(AF537914) Racinaea fraseri chloroplast rps16 gene, intron.        36   3.4    2
(CV695694) SJS_020_72.T7 SJS Schistosoma japonicum cDNA, mRN...    44   3.5    2
(AM457844) Vitis vinifera, whole genome shotgun sequence, co...    42   3.6    2
(BX248583) Blochmannia floridanus complete genome.                 34   3.8    19
(DU082992) 278262 Tomato HindIII BAC Library Solanum lycoper...    40   3.8    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   3.9    11
(CU915393) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.9    4
(BJ365564) Dictyostelium discoideum cDNA clone:ddc35e22, 5' ...    32   4.0    3
(AE017308) Mycoplasma mobile 163K complete genome.                 34   4.6    19
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    34   5.3    16
(AM455084) Vitis vinifera contig VV78X042894.4, whole genome...    32   5.3    5

>(AC116330) Dictyostelium discoideum chromosome 2 map 3191214-3323468
             strain AX4, complete sequence.
          Length = 132254

 Score = 2313 bits (1167), Expect = 0.0
 Identities = 1177/1182 (99%)
 Strand = Plus / Minus


Query: 7     agattttattcagttggctcaattattctttagagagcaaaacgttgatccaccagcatc 66
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15601 agattttattcagttggctcaattattctttagagagcaaaacgttgatccaccagcatc 15542


Query: 67    actttacacaatagataatacaatcgcaaacataaagagttcattagctgaagttatcaa 126
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15541 actttacacaatagataatacaatcgcaaacataaagagttcattagctgaagttatcaa 15482


Query: 127   accaaatcaagatccaagttcattaactttccgttatatgatgatcgttgatccttcaga 186
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15481 accaaatcaagatccaagttcattaactttccgttatatgatgatcgttgatccttcaga 15422


Query: 187   gaatgaatcatccatttcaattctaaaagagattggtattgaaaatttaacaattgttag 246
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15421 gaatgaatcatccatttcaattctaaaagagattggtattgaaaatttaacaattgttag 15362


Query: 247   agttggtggttttgaaaatgatagttcagaggaatcattggtagaatgtgtttcaactat 306
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15361 agttggtggttttgaaaatgatagttcagaggaatcattggtagaatgtgtttcaactat 15302


Query: 307   taaatcaattatggaaactggtggtaccgttgtattggtcaatagtgaaaagattgattc 366
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15301 taaatcaattatggaaactggtggtaccgttgtattggtcaatagtgaaaagattgattc 15242


Query: 367   atgtttctatgaagttttcaatagatactttattttaacaccttcttcagaacatcgtga 426
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15241 atgtttctatgaagttttcaatagatactttattttaacaccttcttcagaacatcgtga 15182


Query: 427   tcgtttacaaatggttgcaaatattagttttggtactcattcagtattttgtacagttca 486
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15181 tcgtttacaaatggttgcaaatattagttttggtactcattcagtattttgtacagttca 15122


Query: 487   tccagactttaaagttatcattcatatgccaatgtcaagattaaagaatactcaattacc 546
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15121 tccagactttaaagttatcattcatatgccaatgtcaagattaaagaatactcaattacc 15062


Query: 547   ttggttaaatagattcgaaaagtatacagtatcaattgatttattaactcaagaattcat 606
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15061 ttggttaaatagattcgaaaagtatacagtatcaattgatttattaactcaagaattcat 15002


Query: 607   tagtaagcatcaatcaagtaccgatctatttaataaccttgtgaagtactccaatcattt 666
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15001 tagtaagcatcaatcaagtaccgatctatttaataaccttgtgaagtactccaatcattt 14942


Query: 667   cgttgatacacttcataataaagcaagtaaaaaatcattattagctggattttcttcaac 726
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14941 cgttgatacacttcataataaagcaagtaaaaaatcattattagctggattttcttcaac 14882


Query: 727   tgaaacttgttcaagtttaatttatcaattctttaaaaattatgatatggtttcaacaac 786
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14881 tgaaacttgttcaagtttaatttatcaattctttaaaaattatgatatggtttcaacaac 14822


Query: 787   taccaattntaaaaanagagaattttataaattattatcaagttcaccaacatcgacagc 846
             |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14821 taccaattctaaaaagagagaattttataaattattatcaagttcaccaacatcgacagc 14762


Query: 847   aacttcaattaaaaatgaaccacaaacattattcaattttaaattattacaaattgcaaa 906
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14761 aacttcaattaaaaatgaaccacaaacattattcaattttaaattattacaaattgcaaa 14702


Query: 907   accagaatcaatcattcgtattaaagattcaatttatccaattaattatttaaaggaata 966
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14701 accagaatcaatcattcgtattaaagattcaatttatccaattaattatttaaaggaata 14642


Query: 967   ttttatcaatcaagaacattttagnatagttagatttttaaagaatttatttacaactaa 1026
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14641 ttttatcaatcaagaacattttagtatagttagatttttaaagaatttatttacaactaa 14582


Query: 1027  atattcaatgaatgaatatatctcaaataaatgggtaattttcactagaacttctttgtc 1086
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14581 atattcaatgaatgaatatatctcaaataaatgggtaattttcactagaacttctttgtc 14522


Query: 1087  attaacttccnttaaagatggtgaagttttacntgaaattttaggtgataatttagttag 1146
             |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 14521 attaacttcctttaaagatggtgaagttttacttgaaattttaggtgataatttagttag 14462


Query: 1147  atcaattataaataagaaattggtttcaaaagatgatgatgg 1188
             ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14461 atcaattataaataagaaattggtttcaaaagatgatgatgg 14420

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,545,896,699
Number of extensions: 94485256
Number of successful extensions: 7799911
Number of sequences better than 10.0: 127
Length of query: 1249
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1225
Effective length of database: 97,308,875,965
Effective search space: 119203373057125
Effective search space used: 119203373057125
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06086-1 (Contig-U06086-1Q) /CSM_Contig/Contig-U06086-1Q.Seq.d
         (1249 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL645911_7(AL645911|pid:none) Mouse DNA sequence from clone RP23...    72   5e-11
AF329945_2(AF329945|pid:none) Takifugu rubripes SUN-like 1 (SUNL...    63   2e-08
BX647946_1(BX647946|pid:none) Homo sapiens mRNA; cDNA DKFZp686C2...    61   7e-08
AP007151_603(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    39   0.39
AP007281_821(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D...    38   0.86
CU469464_275(CU469464|pid:none) Candidatus Phytoplasma mali stra...    37   1.5
AY180958_1(AY180958|pid:none) Avian infectious bronchitis virus ...    37   1.5
AM920435_941(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    37   1.9
AY542516_1(AY542516|pid:none) Dictyocaulus viviparus isolate L3i...    36   3.3
AY542515_1(AY542515|pid:none) Dictyocaulus viviparus isolate L3i...    36   3.3
(P61243) RecName: Full=Protein ycf2;  &AP005672_45(AP005672|pid:...    35   4.3
BA000021_265(BA000021|pid:none) Wigglesworthia glossinidia endos...    35   4.3
FJ345389_1(FJ345389|pid:none) Infectious bronchitis virus strain...    35   5.6
FJ345376_1(FJ345376|pid:none) Infectious bronchitis virus strain...    35   7.3
FJ345390_1(FJ345390|pid:none) Infectious bronchitis virus strain...    35   7.3
AE014298_1139(AE014298|pid:none) Drosophila melanogaster chromos...    35   7.3
AL844507_199(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.5
FJ345366_1(FJ345366|pid:none) Infectious bronchitis virus strain...    34   9.5
AE017308_334(AE017308|pid:none) Mycoplasma mobile 163K complete ...    34   9.5
AY189157_1(AY189157|pid:none) Avian infectious bronchitis virus ...    34   9.5
CP000447_2087(CP000447|pid:none) Shewanella frigidimarina NCIMB ...    34   9.5
AC115606_7(AC115606|pid:none) Dictyostelium discoideum chromosom...    34   9.5
FJ345382_1(FJ345382|pid:none) Infectious bronchitis virus strain...    34   9.5
FJ793941_1(FJ793941|pid:none) Infectious bronchitis virus isolat...    34   9.5
DQ431199_1(DQ431199|pid:none) Infectious bronchitis virus isolat...    34   9.5

>AL645911_7(AL645911|pid:none) Mouse DNA sequence from clone RP23-25M3
            on chromosome 11 Contains the 5' end of the Ddx48 gene
            for DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, the Card14
            gene for caspase recruitment domain family member 14, the
            Sgsh gene for N-sulfoglucosamine sulfohydrolase
            (sulfamidase), the gene for a novel sulfate transporter
            protein (Slc26a11) (F630021I08Rik, D330007K06Rik), the
            gene for a novel protein containing a zinc finger C3HC4
            type (RING finger) domain (D11Ertd759e: DNA segment, Chr
            11, ERATO Doi 759, expressed), the gene for a novel
            endonuclease V protein (D230011K17Rik) and one CpG
            island, complete sequence.
          Length = 4910

 Score = 71.6 bits (174), Expect = 5e-11
 Identities = 75/339 (22%), Positives = 141/339 (41%), Gaps = 24/339 (7%)
 Frame = +2

Query: 65   SLYTIDNTIANIKS--SLAEVIKPNQDPS---------SLTFRYMMIVDPSENESSISIL 211
            S++T     A  K   S  E+IK N  P              RY++++  + N  ++ IL
Sbjct: 2717 SIFTASLPEARYKEEVSTVELIKQNIYPGPQASSRGLDGAESRYLLVL--TRNYVALQIL 2774

Query: 212  KEIGIENLT--IVRVGGFENDSSEESLVECVSTIKSIMETGGTVVLVNSEKIDSCFYEVF 385
            ++   E     I+    F  D     +   ++ +K  METG  VVL+N + +    Y+
Sbjct: 2775 QQTFFEGQQPEIIFGSSFPQDQEYTQICRNINRVKICMETGKMVVLLNLQNLYESLYDAL 2834

Query: 386  NRYFILTPSSEHRDRLQMVANISFGTHSVFCTVHPDFKVIIHMPMSRL-KNTQLPWLNRF 562
            N+Y++     ++ D       +  GTH V C VH  F++I+      + K   +P +NR
Sbjct: 2835 NQYYVYLGGQKYVD-------LGLGTHRVKCRVHTAFRLIVIEEKDVVYKQFPVPLINRL 2887

Query: 563  EKYTVSIDLLTQEFISKHQSSTDLFNNLVKYSNHFVDT------LHNKASKKSLLAGFSS 724
            EK+ + ++ + Q +         +   L ++++ F D         +K S   +  G+ S
Sbjct: 2888 EKHYLDMNTVLQPW------QKSIVQELQQWAHEFADVKADQFIARHKYSPADVFIGYHS 2941

Query: 725  TETCSSLIYQFFKNYDMVSTTTNXKXREFYKLLXXXXXXXXXXIKNEPQTLFNFKLLQIA 904
             + C+S++ Q  +       T      E Y+            +  E +++    LL  A
Sbjct: 2942 -DACASVVLQAVERQGCRDLT-----EELYR-----------KVSEEARSI----LLDCA 2980

Query: 905  KPESIIRIK----DSIYPINYLKEYFINQEHFXIVRFLK 1009
             P++++R+      S       +EY+  Q+H   V FL+
Sbjct: 2981 TPDAVVRLSGSSLGSFTAKQLSQEYYYAQQHNSFVDFLQ 3019

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,595,029,088
Number of extensions: 28188311
Number of successful extensions: 76128
Number of sequences better than 10.0: 25
Number of HSP's gapped: 76037
Number of HSP's successfully gapped: 25
Length of query: 416
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 285
Effective length of database: 621,205,444
Effective search space: 177043551540
Effective search space used: 177043551540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.52  gvh: 0.29  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U06086-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0