>Contig-U06081-1 (Contig-U06081-1Q) /CSM_Contig/Contig-U06081-1Q.Seq.d
ATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCC
CAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCC
AATCCGTCCAGATTTAGTTAACTTTGTCCACACCAACTTAAACAAGAATG
CTCGTATTCCTCGTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGT
GCCTTCGGTAACATGTGTAGAGGTGGTCGTATGTATGGTCCAAACAAGAC
CTGGAGACGTTGGAATCGTAAAGTTAACGTCAACCAAAAGAGATACGCTG
TTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCCTCGTTATGGCTCGT
GGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGA
ATCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGA
AAATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATT
CGTGCTGGTGCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGG
TCCATTAGTCGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTACGTA
ACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTATTAAAA
TTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGC
TTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTC
AAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATATT
GTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAA
AGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCATTAA
AGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCGTCTCAACCCGT
CGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAA
GAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTT
TTAAATAGA

est1=VFD490E,1,1060

ht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARIPRVPGSGT
HRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRI
NGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDSKHIRAGAGKARNRRYKV
RKGPLVVVSGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDST
FGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKRPTAPVRRSNPLK
NLRAMIKLNPAAVSTRRTQVKSLKSKGIKVSKKNQLRAKLVAATFNQ*ifk*

Frame A:
ithkk*llvhlskslmpktkl*vklssqms*ppqsvqi*ltlstpt*trmlvflvfqvqv
htvqvkvpsvtcvevvvcmvqtrpgdvgivkltstkrdtllsql*lpqlsqpslwlvvte
smvsmksh*slptnpltpskkpklplny*rkstptlmspksstpnifvlvlvkqetdvtk
svkvh*ssslvrlpspkpyvtsqvlklptsqdsty*n*hqvvt*vdsssglnplsnn*tq
plvplpnhllkrkvtlshvq*lltlilsdsstlmksklplepaksssnvqlpqfvvlth*
rtyvl*ln*tqppsqpvvlklnh*nqkvsklakrin*eln*llplstnkflnr


Frame B:
shikndyssicpsl*cpkqscr*s*apkcldhpnpsrfs*lcphqlkqecsysscsrfry
tpfrsrclr*hv*rwsyvwskqdletles*s*rqpkeircclsfsclscpsprygswsqn
qwyq*spishcqrir*hppknqscr*iikenqrlr*chqshrlqtyscwcw*skkqtlqs
p*rsisrrlw*dyrlpslt*hprc*scqrlktqlikistrwslr*ihhld*irfrtirln
lwylcqiicskerlhsptsndc*r*ycqtrql**npscr*sqqsrrqtsncpsssf*pik
eltcyd*ikpsrrlnpsyss*iikikryqs*qkesiks*iscchfqpinf*i


Frame C:
ht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARIPRVPGSGT
HRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRI
NGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDSKHIRAGAGKARNRRYKV
RKGPLVVVSGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDST
FGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRASKVVVKRPTAPVRRSNPLK
NLRAMIKLNPAAVSTRRTQVKSLKSKGIKVSKKNQLRAKLVAATFNQ*ifk*

Query= Contig-U06081-1 (Contig-U06081-1Q)
/CSM_Contig/Contig-U06081-1Q.Seq.d
         (1059 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06081-1 (Contig-U06081-1Q) /CSM_Contig/Conti...  2099  0.0
Contig-U05942-1 (Contig-U05942-1Q) /CSM_Contig/Conti...  1596  0.0
Contig-U14481-1 (Contig-U14481-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12406-1 (Contig-U12406-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U09307-1 (Contig-U09307-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U04959-1 (Contig-U04959-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12894-1 (Contig-U12894-1Q) /CSM_Contig/Conti...    34  0.30
Contig-U12504-1 (Contig-U12504-1Q) /CSM_Contig/Conti...    34  0.30
Contig-U12008-1 (Contig-U12008-1Q) /CSM_Contig/Conti...    34  0.30
Contig-U03277-1 (Contig-U03277-1Q) /CSM_Contig/Conti...    34  0.30

>Contig-U06081-1 (Contig-U06081-1Q) /CSM_Contig/Contig-U06081-1Q.Seq.d
          Length = 1059

 Score = 2099 bits (1059), Expect = 0.0
 Identities = 1059/1059 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    atcacacataaaaaatgactactcgtccatttgtccaagtctttgatgcccaaaacaaag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    atcacacataaaaaatgactactcgtccatttgtccaagtctttgatgcccaaaacaaag 60

                                                                        
Query: 61   ttgtaggtaaagttaagctcccaaatgtcttgaccaccccaatccgtccagatttagtta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ttgtaggtaaagttaagctcccaaatgtcttgaccaccccaatccgtccagatttagtta 120

                                                                        
Query: 121  actttgtccacaccaacttaaacaagaatgctcgtattcctcgtgttccaggttcaggta 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  actttgtccacaccaacttaaacaagaatgctcgtattcctcgtgttccaggttcaggta 180

                                                                        
Query: 181  cacaccgttcaggtcaaggtgccttcggtaacatgtgtagaggtggtcgtatgtatggtc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  cacaccgttcaggtcaaggtgccttcggtaacatgtgtagaggtggtcgtatgtatggtc 240

                                                                        
Query: 241  caaacaagacctggagacgttggaatcgtaaagttaacgtcaaccaaaagagatacgctg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  caaacaagacctggagacgttggaatcgtaaagttaacgtcaaccaaaagagatacgctg 300

                                                                        
Query: 301  ttgtctcagctttagctgcctcagctgtcccagccctcgttatggctcgtggtcacagaa 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  ttgtctcagctttagctgcctcagctgtcccagccctcgttatggctcgtggtcacagaa 360

                                                                        
Query: 361  tcaatggtatcaatgaagtcccattagtcattgccaacgaatccgttgacaccctccaaa 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tcaatggtatcaatgaagtcccattagtcattgccaacgaatccgttgacaccctccaaa 420

                                                                        
Query: 421  aaaccaaagctgccgttgaattattaaagaaaatcaacgcctacgctgatgtcaccaaag 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  aaaccaaagctgccgttgaattattaaagaaaatcaacgcctacgctgatgtcaccaaag 480

                                                                        
Query: 481  tcatcgactccaaacatattcgtgctggtgctggtaaagcaagaaacagacgttacaaag 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  tcatcgactccaaacatattcgtgctggtgctggtaaagcaagaaacagacgttacaaag 540

                                                                        
Query: 541  tccgtaaaggtccattagtcgtcgtctctggtaagactaccgtctcccaagccttacgta 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  tccgtaaaggtccattagtcgtcgtctctggtaagactaccgtctcccaagccttacgta 600

                                                                        
Query: 601  acatcccaggtgttgaagttgccaacgtctcaagactcaacttattaaaattagcaccag 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  acatcccaggtgttgaagttgccaacgtctcaagactcaacttattaaaattagcaccag 660

                                                                        
Query: 661  gtggtcacttaggtagattcatcatctggactaaatccgctttcgaacaattagactcaa 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  gtggtcacttaggtagattcatcatctggactaaatccgctttcgaacaattagactcaa 720

                                                                        
Query: 721  cctttggtacctttgccaaatcatctgctcaaaagaaaggttacactctcccacgtccaa 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  cctttggtacctttgccaaatcatctgctcaaaagaaaggttacactctcccacgtccaa 780

                                                                        
Query: 781  tgattgctaacgctgatattgtcagactcgtcaactctgatgaaatccaagctgccgtta 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  tgattgctaacgctgatattgtcagactcgtcaactctgatgaaatccaagctgccgtta 840

                                                                        
Query: 841  gagccagcaaagtcgtcgtcaaacgtccaactgccccagttcgtcgttctaacccattaa 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  gagccagcaaagtcgtcgtcaaacgtccaactgccccagttcgtcgttctaacccattaa 900

                                                                        
Query: 901  agaacttacgtgctatgattaaattaaacccagccgccgtctcaacccgtcgtactcaag 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  agaacttacgtgctatgattaaattaaacccagccgccgtctcaacccgtcgtactcaag 960

                                                                        
Query: 961  ttaaatcattaaaatcaaaaggtatcaaagttagcaaaaagaatcaattaagagctaaat 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ttaaatcattaaaatcaaaaggtatcaaagttagcaaaaagaatcaattaagagctaaat 1020

                                                   
Query: 1021 tagttgctgccactttcaaccaataaatttttaaataga 1059
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tagttgctgccactttcaaccaataaatttttaaataga 1059


>Contig-U05942-1 (Contig-U05942-1Q) /CSM_Contig/Contig-U05942-1Q.Seq.d
          Length = 1110

 Score = 1596 bits (805), Expect = 0.0
 Identities = 824/828 (99%), Gaps = 2/828 (0%)
 Strand = Plus / Plus

                                                                        
Query: 225  ggtcgtatgtatggtccaaacaagacctggagacgttggaatcgtaaagttaacgtcaac 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278  ggtcgtatgtatggtccaaacaagacctggagacgttggaatcgtaaagttaacgtcaac 337

                                                                        
Query: 285  caaaagagatacgctgttgtctcagctttagctgcctcagctgtcccagccctcgttatg 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338  caaaagagatacgctgttgtctcagctttagctgcctcagctgtcccagccctcgttatg 397

                                                                        
Query: 345  gctcgtggtcacagaatcaatggtatcaatgaagtcccattagtcattgccaacgaatcc 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398  gctcgtggtcacagaatcaatggtatcaatgaagtcccattagtcattgccaacgaatcc 457

                                                                        
Query: 405  gttgacaccctcc-aaaaaaccaaagctgccgttgaattattaaagaaaatcaacgccta 463
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458  gttgacaccctcccaaaaaaccaaagctgccgttgaattattaaagaaaatcaacgccta 517

                                                                        
Query: 464  cgctgatgtcaccaaagtcatcgactccaaacatattcgtgctggtgctggtaaagcaag 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  cgctgatgtcaccaaagtcatcgactccaaacatattcgtgctggtgctggtaaagcaag 577

                                                                        
Query: 524  aaacagacgttacaaagtccgtaaaggtccattagtcgtcgtctctggtaagactaccgt 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578  aaacagacgttacaaagtccgtaaaggtccattagtcgtcgtctctggtaagactaccgt 637

                                                                        
Query: 584  ctcccaagccttacgtaacatcccaggtgttgaagttgccaacgtctcaagactcaactt 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638  ctcccaagccttacgtaacatcccaggtgttgaagttgccaacgtctcaagactcaactt 697

                                                                        
Query: 644  attaaaattagcaccaggtggtcacttaggtagattcatcatctggactaaatccgcttt 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698  attaaaattagcaccaggtggtcacttaggtagattcatcatctggactaaatccgcttt 757

                                                                        
Query: 704  cgaacaattagactcaacctttggtacctttgccaaatcatctgctcaaaagaaaggtta 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758  cgaacaattagactcaacctttggtacctttgccaaatcatctgctcaaaagaaaggtta 817

                                                                        
Query: 764  cactctcccacgtccaatgattgctaacgctgatattgtcagactcgtcaactctgatga 823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818  cactctcccacgtccaatgattgctaacgctgatattgtcagactcgtcaactctgatga 877

                                                                        
Query: 824  aatccaagctgccgttagagccagcaaagtcgtcgtcaaacgtccaactgccccagttcg 883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  aatccaagctgccgttagagccagcaaagtcgtcgtcaaacgtccaactgccccagttcg 937

                                                                        
Query: 884  tcgttctaacccattaaagaacttacgtgctatgattaaattaaacccagccgccgtctc 943
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 938  tcgttctaacccattaaagaacttacgtgctatnattaaattaaacccagccgccgtctc 997

                                                                        
Query: 944  aacccgtcgtactcaagttaaatcattaaaatcaaaaggtatcaaagttagcaaaaagaa 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998  aacccgtcgtactcaagttaaatcattaaaatcaaaaggtatcaaagttagcaaaaagaa 1057

                                                            
Query: 1004 tcaattaagagctaaattagttgctgccactttcaaccaataaatttt 1051
            |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 1058 tcaattaagagctaaa-tagttgctgccactttcaaccaataattttt 1104


 Score =  305 bits (154), Expect = 5e-83
 Identities = 154/154 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcacacataaaaaatgactactcgtccatttgtccaagtctttgatgcccaaaacaaagt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10  tcacacataaaaaatgactactcgtccatttgtccaagtctttgatgcccaaaacaaagt 69

                                                                       
Query: 62  tgtaggtaaagttaagctcccaaatgtcttgaccaccccaatccgtccagatttagttaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  tgtaggtaaagttaagctcccaaatgtcttgaccaccccaatccgtccagatttagttaa 129

                                             
Query: 122 ctttgtccacaccaacttaaacaagaatgctcgt 155
           ||||||||||||||||||||||||||||||||||
Sbjct: 130 ctttgtccacaccaacttaaacaagaatgctcgt 163


 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 150 gctcgtattcctcgtgttccaggttcaggtacacaccgttcaggtc 195
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gctcgtattcctcgtgttccaggttcaggtacacaccgttcaggtc 281


>Contig-U14481-1 (Contig-U14481-1Q) /CSM_Contig/Contig-U14481-1Q.Seq.d
          Length = 1143

 Score = 36.2 bits (18), Expect = 0.075
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1042 aataaatttttaaataga 1059
            ||||||||||||||||||
Sbjct: 908  aataaatttttaaataga 925


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7880
Number of Sequences: 6905
Number of extensions: 7880
Number of successful extensions: 837
Number of sequences better than 10.0: 72
length of query: 1059
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1043
effective length of database: 5,564,391
effective search space: 5803659813
effective search space used: 5803659813
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U06081-1 (Contig-U06081-1Q) /CSM_Contig/Contig-U06081-1Q.Seq.d
         (1059 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...  1788   0.0    1
(BJ437663) Dictyostelium discoideum cDNA clone:ddv34p23, 3' ...  1459   0.0    1
(BJ428520) Dictyostelium discoideum cDNA clone:ddv12d11, 3' ...  1457   0.0    1
(BJ432698) Dictyostelium discoideum cDNA clone:ddv19p11, 3' ...  1453   0.0    1
(BJ432108) Dictyostelium discoideum cDNA clone:ddv17l18, 3' ...  1453   0.0    1
(BJ435939) Dictyostelium discoideum cDNA clone:ddv29d06, 3' ...  1447   0.0    1
(BJ430120) Dictyostelium discoideum cDNA clone:ddv6l05, 3' e...  1447   0.0    1
(BJ435678) Dictyostelium discoideum cDNA clone:ddv27j22, 3' ...  1445   0.0    1
(BJ428499) Dictyostelium discoideum cDNA clone:ddv12n03, 3' ...  1445   0.0    1
(BJ431467) Dictyostelium discoideum cDNA clone:ddv14c12, 3' ...  1443   0.0    1
(BJ430155) Dictyostelium discoideum cDNA clone:ddv6c12, 3' e...  1443   0.0    1
(BJ430499) Dictyostelium discoideum cDNA clone:ddv7p10, 3' e...  1441   0.0    1
(BJ431492) Dictyostelium discoideum cDNA clone:ddv14j10, 3' ...  1437   0.0    1
(BJ377854) Dictyostelium discoideum cDNA clone:ddc26n02, 3' ...  1433   0.0    1
(BJ432606) Dictyostelium discoideum cDNA clone:ddv19n03, 3' ...  1411   0.0    1
(BJ435513) Dictyostelium discoideum cDNA clone:ddv27j10, 3' ...  1409   0.0    1
(BJ432567) Dictyostelium discoideum cDNA clone:ddv19g03, 3' ...  1409   0.0    1
(AU052226) Dictyostelium discoideum slug cDNA, clone SLA277.     1407   0.0    1
(BJ428283) Dictyostelium discoideum cDNA clone:ddv11j11, 3' ...  1407   0.0    1
(BJ432017) Dictyostelium discoideum cDNA clone:ddv17h11, 3' ...  1405   0.0    1
(BJ430081) Dictyostelium discoideum cDNA clone:ddv6c04, 3' e...  1405   0.0    1
(BJ428255) Dictyostelium discoideum cDNA clone:ddv11d12, 3' ...  1405   0.0    1
(BJ435689) Dictyostelium discoideum cDNA clone:ddv27m20, 3' ...  1403   0.0    1
(BJ434312) Dictyostelium discoideum cDNA clone:ddv16b18, 3' ...  1396   0.0    1
(BJ430805) Dictyostelium discoideum cDNA clone:ddv8i22, 3' e...  1394   0.0    1
(BJ430386) Dictyostelium discoideum cDNA clone:ddv7g03, 3' e...  1394   0.0    1
(BJ428340) Dictyostelium discoideum cDNA clone:ddv11g18, 3' ...  1394   0.0    1
(BJ431271) Dictyostelium discoideum cDNA clone:ddv13e15, 3' ...  1392   0.0    1
(BJ435687) Dictyostelium discoideum cDNA clone:ddv27l20, 3' ...  1390   0.0    1
(BJ430069) Dictyostelium discoideum cDNA clone:ddv6a02, 3' e...  1388   0.0    1
(BJ428441) Dictyostelium discoideum cDNA clone:ddv11o23, 3' ...  1388   0.0    1
(BJ432739) Dictyostelium discoideum cDNA clone:ddv19j17, 3' ...  1350   0.0    1
(BJ436281) Dictyostelium discoideum cDNA clone:ddv30m15, 3' ...  1336   0.0    1
(BJ430581) Dictyostelium discoideum cDNA clone:ddv7d24, 3' e...  1336   0.0    1
(BJ430550) Dictyostelium discoideum cDNA clone:ddv7m18, 3' e...  1336   0.0    1
(BJ430410) Dictyostelium discoideum cDNA clone:ddv7m02, 3' e...  1336   0.0    1
(BJ428454) Dictyostelium discoideum cDNA clone:ddv12b05, 3' ...  1336   0.0    1
(BJ430531) Dictyostelium discoideum cDNA clone:ddv7h13, 3' e...  1330   0.0    1
(BJ428966) Dictyostelium discoideum cDNA clone:ddv1j24, 3' e...  1330   0.0    2
(BJ428747) Dictyostelium discoideum cDNA clone:ddv1h03, 3' e...  1328   0.0    2
(BJ436186) Dictyostelium discoideum cDNA clone:ddv30d10, 3' ...  1326   0.0    2
(BJ428532) Dictyostelium discoideum cDNA clone:ddv12g09, 3' ...  1326   0.0    1
(BJ436171) Dictyostelium discoideum cDNA clone:ddv30p06, 3' ...  1316   0.0    2
(BJ433553) Dictyostelium discoideum cDNA clone:ddv22b09, 3' ...  1312   0.0    1
(BJ436298) Dictyostelium discoideum cDNA clone:ddv30p17, 3' ...  1310   0.0    2
(BJ429648) Dictyostelium discoideum cDNA clone:ddv4l07, 3' e...  1304   0.0    1
(BJ434483) Dictyostelium discoideum cDNA clone:ddv24b04, 3' ...  1302   0.0    2
(BJ434078) Dictyostelium discoideum cDNA clone:ddv23g22, 3' ...  1302   0.0    2
(BJ432529) Dictyostelium discoideum cDNA clone:ddv18p19, 3' ...  1302   0.0    2
(BJ432363) Dictyostelium discoideum cDNA clone:ddv18a13, 3' ...  1302   0.0    2
(BJ429197) Dictyostelium discoideum cDNA clone:ddv2m18, 3' e...  1302   0.0    1
(BJ428388) Dictyostelium discoideum cDNA clone:ddv11b21, 3' ...  1302   0.0    2
(BJ346913) Dictyostelium discoideum cDNA clone:dda25c17, 3' ...  1302   0.0    2
(BJ436335) Dictyostelium discoideum cDNA clone:ddv30h20, 3' ...  1300   0.0    3
(BJ428234) Dictyostelium discoideum cDNA clone:ddv11p02, 3' ...  1298   0.0    1
(AU039436) Dictyostelium discoideum slug cDNA, clone SLH783.     1294   0.0    1
(BJ432000) Dictyostelium discoideum cDNA clone:ddv17e08, 3' ...  1294   0.0    2
(BJ430932) Dictyostelium discoideum cDNA clone:ddv9f09, 3' e...  1294   0.0    2
(BJ429284) Dictyostelium discoideum cDNA clone:ddv2n24, 3' e...  1294   0.0    3
(BJ428585) Dictyostelium discoideum cDNA clone:ddv12b17, 3' ...  1294   0.0    2
(BJ402555) Dictyostelium discoideum cDNA clone:dds17f12, 3' ...  1294   0.0    2
(BJ433115) Dictyostelium discoideum cDNA clone:ddv20g21, 3' ...  1292   0.0    1
(BJ428893) Dictyostelium discoideum cDNA clone:ddv1i16, 3' e...  1291   0.0    2
(BJ433871) Dictyostelium discoideum cDNA clone:ddv23o03, 3' ...  1289   0.0    2
(BJ435192) Dictyostelium discoideum cDNA clone:ddv26j10, 3' ...  1287   0.0    1
(AU267108) Dictyostelium discoideum vegetative cDNA clone:VS...  1283   0.0    1
(AU039424) Dictyostelium discoideum slug cDNA, clone SLH759.     1283   0.0    1
(BJ428160) Dictyostelium discoideum cDNA clone:ddv10o23, 3' ...  1281   0.0    1
(BJ434494) Dictyostelium discoideum cDNA clone:ddv24d06, 3' ...  1275   0.0    1
(BJ435410) Dictyostelium discoideum cDNA clone:ddv27e05, 3' ...  1273   0.0    3
(BJ433772) Dictyostelium discoideum cDNA clone:ddv22k22, 3' ...  1273   0.0    2
(BJ433011) Dictyostelium discoideum cDNA clone:ddv20b18, 3' ...  1273   0.0    3
(AU039929) Dictyostelium discoideum slug cDNA, clone SLG768.     1271   0.0    1
(AU033650) Dictyostelium discoideum slug cDNA, clone SLB269.     1271   0.0    1
(BJ429234) Dictyostelium discoideum cDNA clone:ddv2e20, 3' e...  1271   0.0    1
(AU034324) Dictyostelium discoideum slug cDNA, clone SLC690.     1269   0.0    1
(AU034318) Dictyostelium discoideum slug cDNA, clone SLC676.     1269   0.0    1
(BJ428348) Dictyostelium discoideum cDNA clone:ddv11i17, 3' ...  1263   0.0    1
(BJ436015) Dictyostelium discoideum cDNA clone:ddv29p09, 3' ...  1261   0.0    2
(BJ433419) Dictyostelium discoideum cDNA clone:ddv21e23, 3' ...  1261   0.0    2
(BJ433724) Dictyostelium discoideum cDNA clone:ddv22b23, 3' ...  1259   0.0    1
(BJ434885) Dictyostelium discoideum cDNA clone:ddv25d07, 3' ...  1257   0.0    3
(BJ434331) Dictyostelium discoideum cDNA clone:ddv16f15, 3' ...  1257   0.0    2
(BJ433774) Dictyostelium discoideum cDNA clone:ddv22k24, 3' ...  1257   0.0    1
(BJ432284) Dictyostelium discoideum cDNA clone:ddv18b09, 3' ...  1257   0.0    2
(BJ430144) Dictyostelium discoideum cDNA clone:ddv6a08, 3' e...  1257   0.0    2
(BJ429401) Dictyostelium discoideum cDNA clone:ddv3i09, 3' e...  1255   0.0    2
(BJ431352) Dictyostelium discoideum cDNA clone:ddv13i22, 3' ...  1253   0.0    1
(BJ430221) Dictyostelium discoideum cDNA clone:ddv6b15, 3' e...  1253   0.0    1
(BJ434416) Dictyostelium discoideum cDNA clone:ddv16e23, 3' ...  1251   0.0    3
(BJ429177) Dictyostelium discoideum cDNA clone:ddv2i16, 3' e...  1251   0.0    2
(BJ428531) Dictyostelium discoideum cDNA clone:ddv12g07, 3' ...  1251   0.0    1
(BJ431882) Dictyostelium discoideum cDNA clone:ddv15m19, 3' ...  1247   0.0    3
(BJ433101) Dictyostelium discoideum cDNA clone:ddv20d24, 3' ...  1237   0.0    1
(BJ435350) Dictyostelium discoideum cDNA clone:ddv26i22, 3' ...  1233   0.0    1
(BJ428833) Dictyostelium discoideum cDNA clone:ddv1l12, 3' e...  1225   0.0    3
(BJ428500) Dictyostelium discoideum cDNA clone:ddv12n04, 3' ...  1221   0.0    1
(AU033428) Dictyostelium discoideum slug cDNA, clone SLA813.     1215   0.0    1
(BJ428537) Dictyostelium discoideum cDNA clone:ddv12i08, 3' ...  1215   0.0    1
(AU034120) Dictyostelium discoideum slug cDNA, clone SLB766.     1205   0.0    1

>(AC115612) Dictyostelium discoideum chromosome 2 map 6245135-6357017
             strain AX4, complete sequence.
          Length = 111882

 Score = 1788 bits (902), Expect = 0.0
 Identities = 908/910 (99%)
 Strand = Plus / Plus


Query: 150   gctcgtattcctcgtgttccaggttcaggtacacaccgttcaggtcaaggtgccttcggt 209
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61255 gctcgtattcctcgtgttccaggttcaggtacacaccgttcaggtcaaggtgccttcggt 61314


Query: 210   aacatgtgtagaggtggtcgtatgtatggtccaaacaagacctggagacgttggaatcgt 269
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61315 aacatgtgtagaggtggtcgtatgtatggtccaaacaagacctggagacgttggaatcgt 61374


Query: 270   aaagttaacgtcaaccaaaagagatacgctgttgtctcagctttagctgcctcagctgtc 329
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61375 aaagttaacgtcaaccaaaagagatacgctgttgtctcagctttagctgcctcagctgtc 61434


Query: 330   ccagccctcgttatggctcgtggtcacagaatcaatggtatcaatgaagtcccattagtc 389
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61435 ccagccctcgttatggctcgtggtcacagaatcaatggtatcaatgaagtcccattagtc 61494


Query: 390   attgccaacgaatccgttgacaccctccaaaaaaccaaagctgccgttgaattattaaag 449
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61495 attgccaacgaatccgttgacaccctccaaaaaaccaaagctgccgttgaattattaaag 61554


Query: 450   aaaatcaacgcctacgctgatgtcaccaaagtcatcgactccaaacatattcgtgctggt 509
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 61555 aaaatcaacgcctacgctgatgtcaccaaagtcatcgactccaaacatattcttgctggt 61614


Query: 510   gctggtaaagcaagaaacagacgttacaaagtccgtaaaggtccattagtcgtcgtctct 569
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61615 gctggtaaagcaagaaacagacgttacaaagtccgtaaaggtccattagtcgtcgtctct 61674


Query: 570   ggtaagactaccgtctcccaagccttacgtaacatcccaggtgttgaagttgccaacgtc 629
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61675 ggtaagactaccgtctcccaagccttacgtaacatcccaggtgttgaagttgccaacgtc 61734


Query: 630   tcaagactcaacttattaaaattagcaccaggtggtcacttaggtagattcatcatctgg 689
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61735 tcaagactcaacttattaaaattagcaccaggtggtcacttaggtagattcatcatctgg 61794


Query: 690   actaaatccgctttcgaacaattagactcaacctttggtacctttgccaaatcatctgct 749
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61795 actaaatccgctttcgaacaattagactcaacctttggtacctttgccaaatcatctgct 61854


Query: 750   caaaagaaaggttacactctcccacgtccaatgattgctaacgctgatattgtcagactc 809
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61855 caaaagaaaggttacactctcccacgtccaatgattgctaacgctgatattgtcagactc 61914


Query: 810   gtcaactctgatgaaatccaagctgccgttagagccagcaaagtcgtcgtcaaacgtcca 869
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61915 gtcaactctgatgaaatccaagctgccgttagagccagcaaagtcgtcgtcaaacgtcca 61974


Query: 870   actgccccagttcgtcgttctaacccattaaagaacttacgtgctatgattaaattaaac 929
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61975 actgccccagttcgtcgttctaacccattaaagaacttacgtgctatgattaaattaaac 62034


Query: 930   ccagccgccgtctcaacccgtcgtactcaagttaaatcattaaaatcaaaaggtatcaaa 989
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62035 ccagccgccgtctcaacccgtcgtactcaagctaaatcattaaaatcaaaaggtatcaaa 62094


Query: 990   gttagcaaaaagaatcaattaagagctaaattagttgctgccactttcaaccaataaatt 1049
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62095 gttagcaaaaagaatcaattaagagctaaattagttgctgccactttcaaccaataaatt 62154


Query: 1050  tttaaataga 1059
             ||||||||||
Sbjct: 62155 tttaaataga 62164

 Score =  260 bits (131), Expect(2) = 9e-65
 Identities = 137/139 (98%)
 Strand = Plus / Plus


Query: 17    gactactcgtccatttgtccaagtctttgatgcccaaaacaaagttgtaggtaaagttaa 76
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61044 gactactcgtccatttgtccaagtctttgatgcccaaaacaaagttgtaggtaaagttaa 61103


Query: 77    gctcccaaatgtcttgaccaccccaatccgtccagatttagttaactttgtccacaccaa 136
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61104 gctcccaaatgttttgaccaccccaatccgtccagatttagttaactttgtccaccccaa 61163


Query: 137   cttaaacaagaatgctcgt 155
             |||||||||||||||||||
Sbjct: 61164 cttaaacaagaatgctcgt 61182

 Score = 34.2 bits (17), Expect(2) = 9e-65
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 1     atcacacataaaaaatg 17
             |||||||||||||||||
Sbjct: 60922 atcacacataaaaaatg 60938

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,005,542,222
Number of extensions: 53948717
Number of successful extensions: 3989457
Number of sequences better than 10.0: 7541
Length of query: 1059
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1035
Effective length of database: 97,308,875,965
Effective search space: 100714686623775
Effective search space used: 100714686623775
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U06081-1 (Contig-U06081-1Q) /CSM_Contig/Contig-U06081-1Q.Seq.d
         (1059 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF147296_1(EF147296|pid:none) Populus trichocarpa clone WS0122_F...   329   9e-89
CP000595_105(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...   320   4e-86
EF676106_1(EF676106|pid:none) Picea sitchensis clone WS02710_D09...   316   8e-85
AB236838_1(AB236838|pid:none) Trifolium pratense RNA for putativ...   315   1e-84
AC123596_24(AC123596|pid:none) Medicago truncatula clone mth1-17...   313   6e-84
(Q9SF40) RecName: Full=60S ribosomal protein L4-1;          Shor...   311   2e-83
AC148756_18(AC148756|pid:none) Medicago truncatula clone mth2-22...   311   2e-83
(P49691) RecName: Full=60S ribosomal protein L4-2; AltName: Full...   310   4e-83
CP001333_223(CP001333|pid:none) Micromonas sp. RCC299 chromosome...   308   2e-82
AK117624_1(AK117624|pid:none) Arabidopsis thaliana At5g02870 mRN...   308   2e-82
AY961533_1(AY961533|pid:none) Lysiphlebus testaceipes ribosomal ...   306   1e-81
AY190725_1(AY190725|pid:none) Pagrus major ribosomal protein L4 ...   305   2e-81
BC049520_1(BC049520|pid:none) Danio rerio ribosomal protein L4, ...   303   5e-81
BT045675_1(BT045675|pid:none) Salmo salar clone ssal-rgf-528-189...   303   9e-81
BC063811_1(BC063811|pid:none) Rattus norvegicus ribosomal protei...   303   9e-81
BT074724_1(BT074724|pid:none) Osmerus mordax clone omor-rgc-503-...   303   9e-81
JC4277(JC4277;PC4076)ribosomal protein L4, cytosolic [validated]...   303   9e-81
CR932189_1(CR932189|pid:none) Paramecium tetraurelia, telomerase...   303   9e-81
BC167741_1(BC167741|pid:none) Xenopus tropicalis cDNA clone MGC:...   302   1e-80
BC041744_1(BC041744|pid:none) Xenopus laevis ribosomal protein L...   301   2e-80
BC054956_1(BC054956|pid:none) Xenopus laevis ribosomal protein L...   301   2e-80
AJ720803_1(AJ720803|pid:none) Gallus gallus mRNA for hypothetica...   301   3e-80
(Q9D8E6) RecName: Full=60S ribosomal protein L4;  &AK008098_1(AK...   300   4e-80
BC043895_1(BC043895|pid:none) Xenopus laevis ribosomal protein L...   300   6e-80
(P50878) RecName: Full=60S ribosomal protein L4; AltName: Full=L...   300   7e-80
(P35679) RecName: Full=60S ribosomal protein L4-A; AltName: Full...   299   1e-79
(P36578) RecName: Full=60S ribosomal protein L4; AltName: Full=L...   299   1e-79
(Q9P784) RecName: Full=60S ribosomal protein L4-B;  &AL353012_6(...   298   2e-79
AM048989_1(AM048989|pid:none) Eucinetus sp. APV-2005 mRNA for ri...   298   3e-79
(Q58DW0) RecName: Full=60S ribosomal protein L4;  &BC102521_1(BC...   297   4e-79
(Q5RCR3) RecName: Full=60S ribosomal protein L4;  &CR858206_1(CR...   297   4e-79
AB463231_1(AB463231|pid:none) Synthetic construct DNA, clone: pF...   297   5e-79
AB208977_1(AB208977|pid:none) Homo sapiens mRNA for ribosomal pr...   297   5e-79
AY769271_1(AY769271|pid:none) Bombyx mori ribosomal protein L4 (...   296   8e-79
BT033748_1(BT033748|pid:none) Zea mays full-length cDNA clone ZM...   295   2e-78
(Q4R5P9) RecName: Full=60S ribosomal protein L4;  &AB169494_1(AB...   295   2e-78
AK223057_1(AK223057|pid:none) Homo sapiens mRNA for ribosomal pr...   294   4e-78
AU066549_1(AU066549|pid:none) Chlamydomonas sp. HS-5 mRNA for 60...   293   7e-78
AK060711_1(AK060711|pid:none) Oryza sativa Japonica Group cDNA c...   293   7e-78
EU959581_1(EU959581|pid:none) Zea mays clone 218704 60S ribosoma...   293   9e-78
DQ440454_1(DQ440454|pid:none) Aedes aegypti clone AET-617a ribos...   293   9e-78
(P49165) RecName: Full=60S ribosomal protein L4; AltName: Full=L...   293   9e-78
EU523116_1(EU523116|pid:none) Heliothis virescens ribosomal prot...   290   6e-77
CR382129_256(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   290   8e-77
BT063074_1(BT063074|pid:none) Zea mays full-length cDNA clone ZM...   290   8e-77
AM494966_115(AM494966|pid:none) Leishmania braziliensis chromoso...   289   1e-76
CR382134_50(CR382134|pid:none) Debaryomyces hansenii strain CBS7...   289   1e-76
FJ168553_11(FJ168553|pid:none) Bodo saltans clone fosmid 46A11, ...   288   2e-76
AM920436_1652(AM920436|pid:none) Penicillium chrysogenum Wiscons...   288   3e-76
CP000080_114(CP000080|pid:none) Leishmania major strain Friedlin...   286   6e-76
S41640(S41640;S34289)ribosomal protein L4.e - fission yeast (Sch...   286   6e-76
FM992688_1292(FM992688|pid:none) Candida dubliniensis CD36 chrom...   286   8e-76
EU441460_1(EU441460|pid:none) Xenopus borealis clone L1.a riboso...   286   8e-76
AP007162_414(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   285   2e-75
(Q28346) RecName: Full=60S ribosomal protein L4; AltName: Full=L1;    285   2e-75
AE017350_186(AE017350|pid:none) Cryptococcus neoformans var. neo...   283   9e-75
AC091483_48(AC091483|pid:none) Trypanosoma brucei chromosome 3 c...   283   9e-75
AM910992_260(AM910992|pid:none) Plasmodium knowlesi strain H chr...   282   1e-74
DQ480548_1(DQ480548|pid:none) Schistosoma mansoni ribosomal prot...   281   2e-74
BT078104_1(BT078104|pid:none) Lepeophtheirus salmonis clone lsal...   280   5e-74
AE016814_379(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...   280   5e-74
(P49626) RecName: Full=60S ribosomal protein L4-B; AltName: Full...   280   6e-74
(P10664) RecName: Full=60S ribosomal protein L4-A; AltName: Full...   280   6e-74
AK297490_1(AK297490|pid:none) Homo sapiens cDNA FLJ50996 complet...   279   1e-73
AL844504_70(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...   278   2e-73
AY814062_1(AY814062|pid:none) Schistosoma japonicum SJCHGC06667 ...   276   7e-73
FN320318_1(FN320318|pid:none) Schistosoma japonicum isolate Anhu...   276   1e-72
FN320319_1(FN320319|pid:none) Schistosoma japonicum isolate Anhu...   275   2e-72
CR380948_179(CR380948|pid:none) Candida glabrata strain CBS138 c...   274   4e-72
FN392319_28(FN392319|pid:none) Pichia pastoris GS115 chromosome ...   273   1e-71
CU640366_615(CU640366|pid:none) Podospora anserina genomic DNA c...   270   6e-71
DQ211981_1(DQ211981|pid:none) Toxoplasma gondii 60S ribosomal su...   268   2e-70
AY389964_1(AY389964|pid:none) Gallus gallus ribosomal protein L4...   265   2e-69
AB429252_1(AB429252|pid:none) Dicyema japonicum rpl4 gene for ri...   264   3e-69
AY389935_1(AY389935|pid:none) Latimeria chalumnae ribosomal prot...   263   6e-69
DQ363679_1(DQ363679|pid:none) Streblomastix strix RPL4 gene, par...   234   5e-60
AK012432_1(AK012432|pid:none) Mus musculus 11 days embryo whole ...   229   1e-58
EU446260_1(EU446260|pid:none) Xenopus muelleri ribosomal protein...   227   6e-58
AF526207_1(AF526207|pid:none) Argopecten irradians isolate iolsa...   212   2e-53
CP000080_113(CP000080|pid:none) Leishmania major strain Friedlin...   200   8e-50
CP000883_19(CP000883|pid:none) Hemiselmis andersenii chromosome ...   194   3e-48
AY829781_1(AY829781|pid:none) Lonomia obliqua ribosomal protein ...   191   5e-47
(O15594) RecName: Full=60S ribosomal protein L4; AltName: Full=L...   188   2e-46
AM048990_1(AM048990|pid:none) Micromalthus debilis partial mRNA ...   187   7e-46
BT046403_1(BT046403|pid:none) Salmo salar clone ssal-evd-533-236...   182   1e-44
AB071329_1(AB071329|pid:none) Paramecium caudatum mRNA for ribos...   182   2e-44
CR940348_389(CR940348|pid:none) Theileria annulata strain Ankara...   182   2e-44
AF083031_104(AF083031|pid:none) Guillardia theta nucleomorph chr...   182   2e-44
DQ223554_1(DQ223554|pid:none) Ovis aries clone TO-DOWN-A16-3 rib...   177   4e-43
EU302528_1(EU302528|pid:none) Lineus viridis ribosomal protein r...   177   4e-43
DQ845176_1(DQ845176|pid:none) Sus scrofa ribosomal protein L4 mR...   174   4e-42
AY231643_1(AY231643|pid:none) Drosophila yakuba clone yak-em_RpL...   172   2e-41
AK297484_1(AK297484|pid:none) Homo sapiens cDNA FLJ50994 complet...   167   4e-40
EU558306_1(EU558306|pid:none) Novocrania anomala putative 60S ri...   159   2e-37
M22583_1(M22583|pid:none) Yeast (S.cerevisiae) ribosomal protein...   159   2e-37
FN320321_1(FN320321|pid:none) Schistosoma japonicum isolate Anhu...   146   1e-33
EU116845_1(EU116845|pid:none) Sipunculus nudus putative ribosoma...   130   6e-29
(Q46G96) RecName: Full=50S ribosomal protein L4P;  &CP000099_102...   127   5e-28
(Q4JB41) RecName: Full=50S ribosomal protein L4P;  &CP000077_558...   127   9e-28
FJ767939_1(FJ767939|pid:none) Pectinaria gouldii ribosomal prote...   125   2e-27
(Q5JDI0) RecName: Full=50S ribosomal protein L4P;  &AP006878_154...   124   6e-27
(A5UL88) RecName: Full=50S ribosomal protein L4P;  &CP000678_761...   123   9e-27
FM200064_1(FM200064|pid:none) Histomonas meleagridis partial mRN...   123   1e-26
(O59420) RecName: Full=50S ribosomal protein L4P;  &BA000001_182...   123   1e-26
(Q9V1T6) RecName: Full=50S ribosomal protein L4P;  &AJ248284_43(...   123   1e-26
AJ315139_1(AJ315139|pid:none) Oncorhynchus mykiss partial mRNA f...   122   2e-26
AK298224_1(AK298224|pid:none) Homo sapiens cDNA FLJ51018 complet...   120   6e-26
(O26111) RecName: Full=50S ribosomal protein L4P;  &AE000666_3(A...   119   2e-25
(O28355) RecName: Full=50S ribosomal protein L4P;  &AE000782_189...   117   7e-25
CP000561_1562(CP000561|pid:none) Pyrobaculum calidifontis JCM 11...   116   1e-24
BA000023_477(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ...   114   4e-24
(Q8ZW51) RecName: Full=50S ribosomal protein L4P;  &AE009441_135...   113   1e-23
(Q9UXA6) RecName: Full=50S ribosomal protein L4P;  &AE006641_651...   112   3e-23
(A6UV67) RecName: Full=50S ribosomal protein L4P;  &CP000743_796...   110   6e-23
(Q97BX6) RecName: Full=50S ribosomal protein L4P;  &BA000011_329...   110   6e-23
CP000660_1976(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135...   110   1e-22
CP001014_794(CP001014|pid:none) Thermoproteus neutrophilus V24St...   108   4e-22
CP000575_1001(CP000575|pid:none) Staphylothermus marinus F1, com...   106   2e-21
CP001403_1389(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14...   105   3e-21
(Q8TY91) RecName: Full=50S ribosomal protein L4P;  &AE009439_414...   105   3e-21
CP001400_1282(CP001400|pid:none) Sulfolobus islandicus M.14.25, ...   104   5e-21
EU686639_2(EU686639|pid:none) Uncultured marine group II euryarc...   104   5e-21
(P60846) RecName: Full=50S ribosomal protein L4P;  &BX950229_154...   104   5e-21
(Q9YFM1) RecName: Full=50S ribosomal protein L4P;  &BA000002_160...   104   6e-21
B72780(B72780)probable ribosomal protein L4 APE0228 - Aeropyrum ...   104   6e-21
CP001399_1369(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...   103   1e-20
(A7I5P0) RecName: Full=50S ribosomal protein L4P;  &CP000780_527...   103   1e-20
(A6UQJ1) RecName: Full=50S ribosomal protein L4P;  &CP000742_848...   103   1e-20
(Q2FU92) RecName: Full=50S ribosomal protein L4P;  &CP000254_217...   102   2e-20
EU686610_11(EU686610|pid:none) Uncultured marine group II euryar...   102   2e-20
CP001365_2417(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4...   101   4e-20
CP000816_961(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...   100   9e-20
(B0R657) RecName: Full=50S ribosomal protein L4P;  &(Q9HPD3) Rec...    99   3e-19
CP000968_1474(CP000968|pid:none) Candidatus Korarchaeum cryptofi...    94   1e-17
DQ156348_5(DQ156348|pid:none) Uncultured marine group II euryarc...    92   2e-17
AM114193_651(AM114193|pid:none) Uncultured methanogenic archaeon...    92   2e-17
AB006961_4(AB006961|pid:none) Halobacterium halobium gene for ri...    91   5e-17
(A3CSZ8) RecName: Full=50S ribosomal protein L4P;  &CP000562_563...    91   7e-17
(P12735) RecName: Full=50S ribosomal protein L4P; AltName: Full=...    88   6e-16
(P60847) RecName: Full=50S ribosomal protein L4P;  &AE017199_145...    87   7e-16
(P14117) RecName: Full=60S ribosomal protein L4; AltName: Full=L...    86   2e-15
DQ158856_101(DQ158856|pid:none) Bigelowiella natans nucleomorph ...    82   2e-14
AJ844648_1(AJ844648|pid:none) Mus musculus partial mRNA for ribo...    82   4e-14
CP000559_82(CP000559|pid:none) Methanocorpusculum labreanum Z, c...    76   2e-12
BX927065_5(BX927065|pid:none) Zebrafish DNA sequence from clone ...    74   1e-11
AB002799_1(AB002799|pid:none) Entamoeba histolytica mRNA for rib...    72   3e-11
DQ363993_1(DQ363993|pid:none) Saccharum hybrid cultivar putative...    62   4e-08
AX971769_1(AX971769|pid:none) Sequence 2572 from Patent EP1104808.     38   0.52
AX969856_1(AX969856|pid:none) Sequence 659 from Patent EP1104808.      37   1.2
EU622808_19(EU622808|pid:none) Bacillus phage Nf, complete genome.     36   2.6
AY686212_1(AY686212|pid:none) Culicoides sonorensis ribosomal pr...    35   3.4
V01438_1(V01438|pid:none) Fragment of Xenopus laevis mRNA for ri...    35   3.4

>EF147296_1(EF147296|pid:none) Populus trichocarpa clone WS0122_F08
            unknown mRNA.
          Length = 408

 Score =  329 bits (844), Expect = 9e-89
 Identities = 176/352 (50%), Positives = 227/352 (64%), Gaps = 31/352 (8%)
 Frame = +3

Query: 45   DAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNAR----------------------- 155
            D     V  V LP+V+   IRPD+VN+VH+N++KN+R
Sbjct: 20   DMATDSVTTVALPDVMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRA 79

Query: 156  ---IPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYXXXXXXXXXX 326
               IPRV G GTHR+GQGAFGNMCRGGRM+ P KTWRRW+RK+NVNQKRY
Sbjct: 80   VSRIPRVSGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNQKRYAVVSAIAASA 139

Query: 327  XXXXXXXRGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDSKHIRA 506
                   RGHR+  + E+PLVI+ +S ++++KT  A+++LK+I AY D  K  DS+ IRA
Sbjct: 140  IPSLVMARGHRVESVPEMPLVIS-DSAESIEKTSTAIKVLKEIGAYPDAEKAKDSQAIRA 198

Query: 507  GAGKARNRRYKVRKGPLVVVSGK-TTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRFI 683
            G GK RNRRY  RKGPL+V   +   + +A RNIPGVEVANV RLNLL+LAPGGHLGRF+
Sbjct: 199  GKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVERLNLLRLAPGGHLGRFV 258

Query: 684  IWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQXXXXXXXXXXX 863
            IWTKSA E+LDS +GTF KSS +KKGY LPR  + NAD+ R++NSDE+Q
Sbjct: 259  IWTKSAIEKLDSIYGTFDKSSEKKKGYVLPRTKMVNADLARIINSDEVQ--SVVNPIKKE 316

Query: 864  XPTAPVRRSNPLKNLRAMIKLNPAAVSTRR----TQVKSLKSKGIKVSKKNQ 1007
               AP+++ NPLKNL  M+KLNP A + RR     + + +KSK  K+ +K +
Sbjct: 317  VKRAPLKK-NPLKNLNVMLKLNPYAKTARRMALLAEAERVKSKKEKLDRKRK 367

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,678,562,042
Number of extensions: 32785726
Number of successful extensions: 80505
Number of sequences better than 10.0: 152
Number of HSP's gapped: 80030
Number of HSP's successfully gapped: 153
Length of query: 353
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 224
Effective length of database: 627,614,014
Effective search space: 140585539136
Effective search space used: 140585539136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.76  gvh: 0.36  alm: 0.27  top: 0.23  tms: 0.07  mit: 0.38  mip: 0.19
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic

>> prediction for Contig-U06081-1 is mit