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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06072-1
Contig ID Contig-U06072-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U06072-1 (Contig-U06072-1Q) /CSM_Contig/Contig-U06072-1Q.Seq.d
ATTCCAAAAAAAACATCAAACAAAAAATCAAAAAATAAAATGAAACTTTA
TATCTTTAAGAAATTATTATCAATAATTTTACTATCAATTATTTTTCTTA
TAAATATTTCAAAAACAGAAGAAAGTTCAAGTTCAGAATATATCCTAGAT
TTCATTTATGTTGAACAATATGGTGGAAAAGGTTGTAATTCAAAAACTGG
TGAAACTGTAGTCGATGATAATTATTGTGCATTTATAAATGATTACCCAA
CAATAATAAATACAACTGCAAATGGTGAAAGTTTCTATTTTTCAGTTTTC
AATTCAGATGATTACCTTTGTTCTAATGGTCACATTGAAAGACAACATGT
TAAAATAAATACATGTTTCGCTTCTTGTCCAAAAGGATGTACAGATTTTA
ATGTATATATTAAATATCAACCTGCATTATCAATAAAAATAAATAATTAA
ATAAATAATTATTATTTATTACTTTTTTTGTTTTTTTTTAAAAAAAA
Gap no gap
Contig length 497
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7814980
End point 7814543
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06072
List of clone(s) 

est1=VFD365F,1,498
Translated Amino Acid sequence 
IPKKTSNKKSKNKMKLYIFKKLLSIILLSIIFLINISKTEESSSSEYILDFIYVEQYGGK
GCNSKTGETVVDDNYCAFINDYPTIINTTANGESFYFSVFNSDDYLCSNGHIERQHVKIN
TCFASCPKGCTDFNVYIKYQPALSIKINN*innyylllflfffkk
Translated Amino Acid sequence (All Frames) 
Frame A:
IPKKTSNKKSKNKMKLYIFKKLLSIILLSIIFLINISKTEESSSSEYILDFIYVEQYGGK
GCNSKTGETVVDDNYCAFINDYPTIINTTANGESFYFSVFNSDDYLCSNGHIERQHVKIN
TCFASCPKGCTDFNVYIKYQPALSIKINN*innyylllflfffkk


Frame B:
fqkkhqtknqkik*nfislrnyyq*fyyqlffl*ifqkqkkvqvqnis*isfmlnnmvek
vviqklvkl*smiiivhl*mitqq**iqlqmvkvsifqfsiqmitfvlmvtlkdnmlk*i
hvsllvqkdvqilmyilninlhyq*k*iik*iiiiyyffcfflkk


Frame C:
skknikqkikk*netlyl*eiiinnftinyfsykyfknrrkfkfriyprfhlc*tiwwkr
l*fknw*ncsr**llciyk*lpnnnkynckw*kflffsfqfr*lplf*wsh*kttc*nky
mfrflskrmyrf*ciy*istciinknk*lnk*llfitffvff*kk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06072-1 (Contig-U06072-1Q)
/CSM_Contig/Contig-U06072-1Q.Seq.d
         (497 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06072-1 (Contig-U06072-1Q) /CSM_Contig/Conti...   856  0.0
Contig-U10521-1 (Contig-U10521-1Q) /CSM_Contig/Conti...    48  9e-06
Contig-U01880-1 (Contig-U01880-1Q) /CSM_Contig/Conti...    48  9e-06
Contig-U01028-1 (Contig-U01028-1Q) /CSM_Contig/Conti...    48  9e-06
Contig-U12648-1 (Contig-U12648-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U11789-1 (Contig-U11789-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U10836-1 (Contig-U10836-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U08943-1 (Contig-U08943-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U06395-1 (Contig-U06395-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U05459-1 (Contig-U05459-1Q) /CSM_Contig/Conti...    46  4e-05

>Contig-U06072-1 (Contig-U06072-1Q) /CSM_Contig/Contig-U06072-1Q.Seq.d
          Length = 497

 Score =  856 bits (432), Expect = 0.0
 Identities = 432/432 (100%)
 Strand = Plus / Plus

                                                                       
Query: 41  tgaaactttatatctttaagaaattattatcaataattttactatcaattatttttctta 100
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  tgaaactttatatctttaagaaattattatcaataattttactatcaattatttttctta 100

                                                                       
Query: 101 taaatatttcaaaaacagaagaaagttcaagttcagaatatatcctagatttcatttatg 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 taaatatttcaaaaacagaagaaagttcaagttcagaatatatcctagatttcatttatg 160

                                                                       
Query: 161 ttgaacaatatggtggaaaaggttgtaattcaaaaactggtgaaactgtagtcgatgata 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttgaacaatatggtggaaaaggttgtaattcaaaaactggtgaaactgtagtcgatgata 220

                                                                       
Query: 221 attattgtgcatttataaatgattacccaacaataataaatacaactgcaaatggtgaaa 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 attattgtgcatttataaatgattacccaacaataataaatacaactgcaaatggtgaaa 280

                                                                       
Query: 281 gtttctatttttcagttttcaattcagatgattacctttgttctaatggtcacattgaaa 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gtttctatttttcagttttcaattcagatgattacctttgttctaatggtcacattgaaa 340

                                                                       
Query: 341 gacaacatgttaaaataaatacatgtttcgcttcttgtccaaaaggatgtacagatttta 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gacaacatgttaaaataaatacatgtttcgcttcttgtccaaaaggatgtacagatttta 400

                                                                       
Query: 401 atgtatatattaaatatcaacctgcattatcaataaaaataaataattaaataaataatt 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atgtatatattaaatatcaacctgcattatcaataaaaataaataattaaataaataatt 460

                       
Query: 461 attatttattac 472
           ||||||||||||
Sbjct: 461 attatttattac 472


>Contig-U10521-1 (Contig-U10521-1Q) /CSM_Contig/Contig-U10521-1Q.Seq.d
          Length = 990

 Score = 48.1 bits (24), Expect = 9e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 432 aataaaaataaataattaaataaa 455
           ||||||||||||||||||||||||
Sbjct: 29  aataaaaataaataattaaataaa 52


>Contig-U01880-1 (Contig-U01880-1Q) /CSM_Contig/Contig-U01880-1Q.Seq.d
          Length = 956

 Score = 48.1 bits (24), Expect = 9e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 433 ataaaaataaataattaaataaat 456
           ||||||||||||||||||||||||
Sbjct: 900 ataaaaataaataattaaataaat 923


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,074
Number of Sequences: 6905
Number of extensions: 19074
Number of successful extensions: 3868
Number of sequences better than 10.0: 1195
length of query: 497
length of database: 5,674,871
effective HSP length: 16
effective length of query: 481
effective length of database: 5,564,391
effective search space: 2676472071
effective search space used: 2676472071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 7
Homology vs DNA 
Query= Contig-U06072-1 (Contig-U06072-1Q) /CSM_Contig/Contig-U06072-1Q.Seq.d
         (497 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...   720   0.0    1
(BJ412240) Dictyostelium discoideum cDNA clone:ddv7b17, 5' e...   720   0.0    1
(ER577683) 1093015818835 Global-Ocean-Sampling_GS-36-01-01-2...    46   0.009  2
(AC084290) Homo sapiens 12 BAC RP11-568G5 (Roswell Park Canc...    44   0.009  2
(AC207852) Nomascus leucogenys leucogenys clone CH271-447H11...    40   0.032  4
(AC149906) Strongylocentrotus purpuratus clone R3-15L2, WORK...    40   0.068  3
(AC139025) Mus musculus chromosome 8, clone RP23-426K13, com...    50   0.076  1
(AC127551) Mus musculus BAC clone RP24-547H23 from chromosom...    50   0.076  1
(AC021627) Mus musculus chromosome 8 clone RP23-190F16 map 8...    50   0.076  1
(AC177200) Strongylocentrotus purpuratus clone R3-4018N23, W...    34   0.077  5
(AC160320) Bos taurus clone CH240-33M12, WORKING DRAFT SEQUE...    38   0.24   4
(CR589875) Zebrafish DNA sequence from clone DKEY-15K16 in l...    48   0.30   1
(EJ556423) 1092959501603 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.30   1
(EJ535094) 1092955252815 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.30   1
(CZ936680) 255922 Tomato EcoRI BAC Library Solanum lycopersi...    48   0.30   1
(CL054332) CH216-79B18_RM1.1 CH216 Xenopus (Silurana) tropic...    48   0.30   1
(BU233941) 603412150F1 CSEQCHN24 Gallus gallus cDNA clone Ch...    48   0.30   1
(AC084870) Homo sapiens chromosome UL clone RP11-551E21, WOR...    46   0.65   3
(AM433752) Vitis vinifera contig VV78X039967.7, whole genome...    32   0.76   2
(DQ471382) Eurosta solidaginis 16S ribosomal RNA gene, parti...    36   0.82   2
(AF126314) Spiniphora punctipennis 12S ribosomal RNA gene, p...    36   0.84   2
(AF126308) Melanostoma scalare 12S ribosomal RNA gene, parti...    36   0.84   2
(AF154714) Melanostoma apicale 12S ribosomal RNA gene, parti...    36   0.87   2
(AF154713) Melanostoma apicale 12S ribosomal RNA gene, parti...    36   0.97   2
(AF154715) Melanostoma apicale 12S ribosomal RNA gene, parti...    36   0.98   2
(AC164116) Mus musculus BAC clone RP24-242F4 from chromosome...    46   1.2    1
(AC154510) Mus musculus BAC clone RP23-210I20 from chromosom...    46   1.2    1
(BS000588) Pan troglodytes chromosome Y clone:PTB-443K18.          46   1.2    1
(BS000573) Pan troglodytes chromosome Y clone:RP43-021M11, c...    46   1.2    1
(AC147663) Pan troglodytes BAC clone CH251-304A22 from Y, co...    46   1.2    1
(AC142354) Pan troglodytes BAC clone RP43-21M11 from chromos...    46   1.2    1
(AC216548) Populus trichocarpa clone POP032-K07, complete se...    46   1.2    1
(AC016678) Homo sapiens BAC clone RP11-55O11 from Y, complet...    46   1.2    1
(AC147685) Pan troglodytes chromosome UNK clone CH251-231P15...    46   1.2    1
(AC147662) Pan troglodytes chromosome UNK clone CH251-272J24...    46   1.2    1
(AC079534) Mus musculus clone RP23-349F18, WORKING DRAFT SEQ...    46   1.2    1
(AC079484) Mus musculus clone RP23-163B15, WORKING DRAFT SEQ...    46   1.2    1
(CU372901) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(EK361329) 1095469009995 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.2    1
(EJ152016) 1092343771334 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.2    1
(EI283331) GM_WBc0002A17.f GM_WBc Glycine max genomic clone ...    46   1.2    1
(DH002122) Oryzias latipes Fosmid clone:GOLWFno16_e24, forwa...    46   1.2    1
(EB599610) AGENCOURT_54966433 D. mojavensis EST Drosophila m...    46   1.2    1
(EU294162) Escherichia coli serotype O79 O antigen gene clus...    46   1.2    1
(AF402313) Shigella boydii serotype 5 O-antigen gene cluster...    46   1.2    1
(AC232175) Lama pacos clone CH246-232F1, WORKING DRAFT SEQUE...    36   1.5    4
(CU855613) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.5    5
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    32   1.6    10
(AY573086) Neosilba zadolicha 12S ribosomal RNA gene, partia...    36   1.7    2
(AY573104) Piophila nigriceps 12S ribosomal RNA gene, partia...    36   1.7    2
(AC007767) Sequence of BAC F5D14 from Arabidopsis thaliana c...    42   1.7    3
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   1.8    7
(CP000099) Methanosarcina barkeri str. Fusaro, complete genome.    32   1.9    2
(EK070379) 1092960187575 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.1    2
(AC165965) Mus musculus BAC clone RP23-307L24 from chromosom...    34   2.3    2
(AC130721) Mus musculus BAC clone RP24-333B3 from chromosome...    34   2.4    2
(AC027461) Homo sapiens clone RP11-649M2, LOW-PASS SEQUENCE ...    34   2.4    2
(AC177232) Strongylocentrotus purpuratus clone R3-40O11, WOR...    38   2.6    3
(AX434271) Sequence 2686 from Patent WO0229113.                    38   2.7    2
(AR802872) Sequence 2686 from patent US 7018794.                   38   2.7    2
(AK082100) Mus musculus 0 day neonate cerebellum cDNA, RIKEN...    34   2.9    2
(AF126320) Protoclythia modesta 12S ribosomal RNA gene, part...    36   3.1    2
(AY573067) Archytas nivalis 12S ribosomal RNA gene, partial ...    34   3.1    2
(CN664111) A0808H01-5 NIA Mouse E13.5 whole embryo cDNA libr...    34   3.1    2
(CR388228) Zebrafish DNA sequence from clone DKEY-279J5 in l...    34   3.2    4
(EF613323) Phlebotomus chabaudi 12S ribosomal RNA gene, part...    36   3.3    2
(CU856039) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.4    4
(AC015336) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    42   3.6    2
(AF154737) Protonephrocerus chiloensis 12S ribosomal RNA gen...    34   3.6    2
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   4.0    8
(AC006004) Homo sapiens PAC clone RP4-803F10 from 7, complet...    38   4.2    3
(CR759863) Zebrafish DNA sequence from clone DKEY-240K8 in l...    44   4.7    1
(BX284614) Zebrafish DNA sequence from clone CH211-140G18 in...    44   4.7    1
(AF409094) Diachasmimorpha longicaudata entomopoxvirus putat...    44   4.7    1
(L16953) Mouse tumor cell dnaJ-like protein 1  mRNA, complet...    44   4.7    1
(BC080300) Mus musculus DnaJ (Hsp40) homolog, subfamily C, m...    44   4.7    1
(AC125225) Mus musculus BAC clone RP23-36I17 from 6, complet...    44   4.7    1
(AC225029) Pan troglodytes BAC clone CH251-373F13 from chrom...    44   4.7    1
(AC202045) Pongo abelii BAC clone CH276-405D11 from chromoso...    44   4.7    1
(AP009566) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   4.7    1
(AM460282) Vitis vinifera contig VV78X085811.7, whole genome...    44   4.7    1
(DI095098) Methods For Assessing and Treating Leukemia.            44   4.7    1
(DD228942) Methods For Assessing and Treating Leukemia.            44   4.7    1
(DD013526) METHOD FOR EXAMINING ISCHEMIC CONDITIONS.               44   4.7    1
(CS500410) Sequence 111 from Patent EP1767656.                     44   4.7    1
(AX774795) Sequence 111 from Patent WO03038129.                    44   4.7    1
(AX305364) Sequence 115 from Patent WO0188188.                     44   4.7    1
(AL391516) Human chromosome 14 DNA sequence BAC R-629F19 of ...    44   4.7    1
(AC009493) Homo sapiens BAC clone RP11-448A3 from 7, complet...    44   4.7    1
(AC131855) Rattus norvegicus clone CH230-200K6, WORKING DRAF...    44   4.7    1
(AC128098) Rattus norvegicus clone CH230-322L19, *** SEQUENC...    44   4.7    1
(CU915303) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.7    1
(CU693417) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.7    1
(CU582789) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.7    1
(BX511199) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   4.7    1
(AC229615) Lama pacos clone CH246-292B16, WORKING DRAFT SEQU...    44   4.7    1
(AC215584) Procavia capensis clone CH280-500K10, WORKING DRA...    44   4.7    1
(AC215575) Procavia capensis clone CH280-298A7, WORKING DRAF...    44   4.7    1
(AC207855) Colobus guereza clone CH272-125E24, WORKING DRAFT...    44   4.7    1
(AC203492) Colobus guereza clone CH272-445C22, WORKING DRAFT...    44   4.7    1

>(AC116977) Dictyostelium discoideum chromosome 2 map 5515173-5817331
              strain AX4, complete sequence.
          Length = 302156

 Score =  720 bits (363), Expect = 0.0
 Identities = 363/363 (100%)
 Strand = Plus / Minus


Query: 41     tgaaactttatatctttaagaaattattatcaataattttactatcaattatttttctta 100
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222489 tgaaactttatatctttaagaaattattatcaataattttactatcaattatttttctta 222430


Query: 101    taaatatttcaaaaacagaagaaagttcaagttcagaatatatcctagatttcatttatg 160
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222429 taaatatttcaaaaacagaagaaagttcaagttcagaatatatcctagatttcatttatg 222370


Query: 161    ttgaacaatatggtggaaaaggttgtaattcaaaaactggtgaaactgtagtcgatgata 220
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222369 ttgaacaatatggtggaaaaggttgtaattcaaaaactggtgaaactgtagtcgatgata 222310


Query: 221    attattgtgcatttataaatgattacccaacaataataaatacaactgcaaatggtgaaa 280
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222309 attattgtgcatttataaatgattacccaacaataataaatacaactgcaaatggtgaaa 222250


Query: 281    gtttctatttttcagttttcaattcagatgattacctttgttctaatggtcacattgaaa 340
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222249 gtttctatttttcagttttcaattcagatgattacctttgttctaatggtcacattgaaa 222190


Query: 341    gacaacatgttaaaataaatacatgtttcgcttcttgtccaaaaggatgtacagatttta 400
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222189 gacaacatgttaaaataaatacatgtttcgcttcttgtccaaaaggatgtacagatttta 222130


Query: 401    atg 403
              |||
Sbjct: 222129 atg 222127

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 566,908,496
Number of extensions: 37474962
Number of successful extensions: 3308966
Number of sequences better than 10.0: 176
Length of query: 497
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 474
Effective length of database: 93,106,754,628
Effective search space: 44132601693672
Effective search space used: 44132601693672
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U06072-1 (Contig-U06072-1Q) /CSM_Contig/Contig-U06072-1Q.Seq.d
         (497 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_83(AC116977|pid:none) Dictyostelium discoideum chromoso...   228   5e-59
AC115612_34(AC115612|pid:none) Dictyostelium discoideum chromoso...    41   0.013
AC115612_7(AC115612|pid:none) Dictyostelium discoideum chromosom...    37   0.25
L14815_1(L14815|pid:none) Entamoeba histolytica HM-1:IMSS galact...    35   1.2
CP000859_615(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c...    34   1.6
AF501280_1(AF501280|pid:none) Entamoeba histolytica clone E3 Gal...    34   2.1
FM954972_1439(FM954972|pid:none) Vibrio splendidus LGP32 chromos...    33   4.7
FN392321_638(FN392321|pid:none) Pichia pastoris GS115 chromosome...    32   6.2
AM263198_1039(AM263198|pid:none) Listeria welshimeri serovar 6b ...    32   8.1
AE009951_1582(AE009951|pid:none) Fusobacterium nucleatum subsp. ...    32   8.1

>AC116977_83(AC116977|pid:none) Dictyostelium discoideum chromosome
           2 map 5515173-5817331 strain AX4, complete sequence.
          Length = 136

 Score =  228 bits (582), Expect = 5e-59
 Identities = 106/106 (100%), Positives = 106/106 (100%)
 Frame = +1

Query: 115 TEESSSSEYILDFIYVEQYGGKGCNSKTGETVVDDNYCAFINDYPTIINTTANGESFYFS 294
           TEESSSSEYILDFIYVEQYGGKGCNSKTGETVVDDNYCAFINDYPTIINTTANGESFYFS
Sbjct: 26  TEESSSSEYILDFIYVEQYGGKGCNSKTGETVVDDNYCAFINDYPTIINTTANGESFYFS 85

Query: 295 VFNSDDYLCSNGHIERQHVKINTCFASCPKGCTDFNVYIKYQPALS 432
           VFNSDDYLCSNGHIERQHVKINTCFASCPKGCTDFNVYIKYQPALS
Sbjct: 86  VFNSDDYLCSNGHIERQHVKINTCFASCPKGCTDFNVYIKYQPALS 131

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 483,083,601
Number of extensions: 7265427
Number of successful extensions: 23953
Number of sequences better than 10.0: 10
Number of HSP's gapped: 23948
Number of HSP's successfully gapped: 10
Length of query: 165
Length of database: 1,040,966,779
Length adjustment: 119
Effective length of query: 46
Effective length of database: 659,656,864
Effective search space: 30344215744
Effective search space used: 30344215744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.65  gvh: 0.50  alm: 0.21  top: -0.13  tms: 0.07  mit: 0.45  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.28  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: Golgi
	 16.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for Contig-U06072-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0