Homology vs DNA |
Query= Contig-U06058-1 (Contig-U06058-1Q) /CSM_Contig/Contig-U06058-1Q.Seq.d (1185 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(X55973) D. discoideum EF1-I gene for elongation factor 1 al... 1481 0.0 2 (BJ431495) Dictyostelium discoideum cDNA clone:ddv14k09, 3' ... 1469 0.0 1 (X55972) D. discoideum EF1-II gene for elongation factor 1 a... 1425 0.0 2 (BJ431041) Dictyostelium discoideum cDNA clone:ddv9m16, 3' e... 1402 0.0 1 (BJ429306) Dictyostelium discoideum cDNA clone:ddv3c05, 3' e... 1398 0.0 1 (BJ435993) Dictyostelium discoideum cDNA clone:ddv29g11, 3' ... 1396 0.0 1 (BJ432840) Dictyostelium discoideum cDNA clone:ddv20c03, 3' ... 1396 0.0 1 (BJ431017) Dictyostelium discoideum cDNA clone:ddv9h15, 3' e... 1396 0.0 1 (BJ430578) Dictyostelium discoideum cDNA clone:ddv7d21, 3' e... 1396 0.0 1 (BJ430245) Dictyostelium discoideum cDNA clone:ddv6g17, 3' e... 1396 0.0 1 (BJ435480) Dictyostelium discoideum cDNA clone:ddv27c07, 3' ... 1394 0.0 1 (BJ429815) Dictyostelium discoideum cDNA clone:ddv4p24, 3' e... 1392 0.0 1 (BJ436008) Dictyostelium discoideum cDNA clone:ddv29n11, 3' ... 1390 0.0 1 (BJ429433) Dictyostelium discoideum cDNA clone:ddv3p07, 3' e... 1390 0.0 1 (BJ347652) Dictyostelium discoideum cDNA clone:dda27b19, 3' ... 1390 0.0 1 (BJ428786) Dictyostelium discoideum cDNA clone:ddv1a12, 3' e... 1388 0.0 1 (BJ436368) Dictyostelium discoideum cDNA clone:ddv30o23, 3' ... 1384 0.0 1 (BJ436329) Dictyostelium discoideum cDNA clone:ddv30f24, 3' ... 1384 0.0 1 (BJ429460) Dictyostelium discoideum cDNA clone:ddv3f15, 3' e... 1384 0.0 1 (BJ428965) Dictyostelium discoideum cDNA clone:ddv1j23, 3' e... 1384 0.0 1 (BJ432917) Dictyostelium discoideum cDNA clone:ddv20a11, 3' ... 1382 0.0 1 (BJ429019) Dictyostelium discoideum cDNA clone:ddv2h02, 3' e... 1382 0.0 1 (BJ436260) Dictyostelium discoideum cDNA clone:ddv30h17, 3' ... 1378 0.0 1 (BJ435777) Dictyostelium discoideum cDNA clone:ddv28f12, 3' ... 1378 0.0 1 (BJ429510) Dictyostelium discoideum cDNA clone:ddv3c20, 3' e... 1378 0.0 1 (BJ428861) Dictyostelium discoideum cDNA clone:ddv1b17, 3' e... 1378 0.0 1 (BJ433078) Dictyostelium discoideum cDNA clone:ddv20p16, 3' ... 1376 0.0 1 (BJ432953) Dictyostelium discoideum cDNA clone:ddv20g12, 3' ... 1376 0.0 1 (BJ432994) Dictyostelium discoideum cDNA clone:ddv20o11, 3' ... 1374 0.0 1 (BJ432893) Dictyostelium discoideum cDNA clone:ddv20m03, 3' ... 1374 0.0 1 (BJ429032) Dictyostelium discoideum cDNA clone:ddv2k04, 3' e... 1374 0.0 1 (BJ432828) Dictyostelium discoideum cDNA clone:ddv20a03, 3' ... 1372 0.0 1 (BJ430284) Dictyostelium discoideum cDNA clone:ddv6o16, 3' e... 1372 0.0 2 (BJ430222) Dictyostelium discoideum cDNA clone:ddv6b17, 3' e... 1360 0.0 2 (BJ436292) Dictyostelium discoideum cDNA clone:ddv30o16, 3' ... 1356 0.0 1 (BJ433263) Dictyostelium discoideum cDNA clone:ddv21d08, 3' ... 1356 0.0 1 (BJ430589) Dictyostelium discoideum cDNA clone:ddv7h22, 3' e... 1356 0.0 2 (BJ430262) Dictyostelium discoideum cDNA clone:ddv6j18, 3' e... 1354 0.0 1 (BJ374969) Dictyostelium discoideum cDNA clone:ddc16o22, 3' ... 1352 0.0 1 (BJ428476) Dictyostelium discoideum cDNA clone:ddv12g05, 3' ... 1348 0.0 2 (BJ432014) Dictyostelium discoideum cDNA clone:ddv17h08, 3' ... 1346 0.0 1 (BJ432929) Dictyostelium discoideum cDNA clone:ddv20c12, 3' ... 1344 0.0 1 (BJ430152) Dictyostelium discoideum cDNA clone:ddv6c08, 3' e... 1344 0.0 1 (BJ430124) Dictyostelium discoideum cDNA clone:ddv6m03, 3' e... 1344 0.0 1 (BJ432368) Dictyostelium discoideum cDNA clone:ddv18a18, 3' ... 1342 0.0 1 (BJ428780) Dictyostelium discoideum cDNA clone:ddv1p05, 3' e... 1342 0.0 2 (BJ432526) Dictyostelium discoideum cDNA clone:ddv18o22, 3' ... 1340 0.0 2 (BJ432110) Dictyostelium discoideum cDNA clone:ddv17m14, 3' ... 1340 0.0 1 (BJ398418) Dictyostelium discoideum cDNA clone:dds12j11, 3' ... 1340 0.0 1 (BJ430716) Dictyostelium discoideum cDNA clone:ddv8n12, 3' e... 1338 0.0 1 (BJ428798) Dictyostelium discoideum cDNA clone:ddv1d10, 3' e... 1338 0.0 2 (BJ373671) Dictyostelium discoideum cDNA clone:ddc4m09, 3' e... 1338 0.0 1 (BJ431433) Dictyostelium discoideum cDNA clone:ddv14l05, 3' ... 1336 0.0 1 (BJ373752) Dictyostelium discoideum cDNA clone:ddc4h22, 3' e... 1336 0.0 1 (BJ371774) Dictyostelium discoideum cDNA clone:ddc1n10, 3' e... 1336 0.0 1 (BJ433675) Dictyostelium discoideum cDNA clone:ddv22i15, 3' ... 1334 0.0 1 (BJ398777) Dictyostelium discoideum cDNA clone:dds2o04, 3' e... 1334 0.0 2 (BJ429374) Dictyostelium discoideum cDNA clone:ddv3c11, 3' e... 1332 0.0 1 (BJ429285) Dictyostelium discoideum cDNA clone:ddv2o21, 3' e... 1332 0.0 1 (BJ428296) Dictyostelium discoideum cDNA clone:ddv11m12, 3' ... 1332 0.0 2 (BJ436236) Dictyostelium discoideum cDNA clone:ddv30b16, 3' ... 1330 0.0 1 (BJ433408) Dictyostelium discoideum cDNA clone:ddv21c21, 3' ... 1330 0.0 1 (BJ433394) Dictyostelium discoideum cDNA clone:ddv21o18, 3' ... 1330 0.0 1 (BJ429381) Dictyostelium discoideum cDNA clone:ddv3e09, 3' e... 1330 0.0 1 (BJ428993) Dictyostelium discoideum cDNA clone:ddv2b04, 3' e... 1330 0.0 1 (BJ433306) Dictyostelium discoideum cDNA clone:ddv21k12, 3' ... 1328 0.0 1 (BJ430949) Dictyostelium discoideum cDNA clone:ddv9i11, 3' e... 1328 0.0 2 (BJ430408) Dictyostelium discoideum cDNA clone:ddv7l05, 3' e... 1328 0.0 2 (BJ436135) Dictyostelium discoideum cDNA clone:ddv30h02, 3' ... 1326 0.0 1 (BJ436065) Dictyostelium discoideum cDNA clone:ddv29b23, 3' ... 1326 0.0 1 (BJ435666) Dictyostelium discoideum cDNA clone:ddv27h19, 3' ... 1326 0.0 2 (BJ435638) Dictyostelium discoideum cDNA clone:ddv27c19, 3' ... 1326 0.0 2 (BJ434536) Dictyostelium discoideum cDNA clone:ddv24l06, 3' ... 1326 0.0 1 (BJ432878) Dictyostelium discoideum cDNA clone:ddv20j06, 3' ... 1326 0.0 2 (BJ432858) Dictyostelium discoideum cDNA clone:ddv20g04, 3' ... 1326 0.0 1 (BJ430082) Dictyostelium discoideum cDNA clone:ddv6c05, 3' e... 1326 0.0 2 (BJ429790) Dictyostelium discoideum cDNA clone:ddv4k21, 3' e... 1326 0.0 1 (BJ429564) Dictyostelium discoideum cDNA clone:ddv4a01, 3' e... 1326 0.0 1 (BJ371730) Dictyostelium discoideum cDNA clone:ddc1b12, 3' e... 1326 0.0 1 (BJ435963) Dictyostelium discoideum cDNA clone:ddv29l03, 3' ... 1324 0.0 1 (BJ430357) Dictyostelium discoideum cDNA clone:ddv7a03, 3' e... 1324 0.0 2 (BJ429730) Dictyostelium discoideum cDNA clone:ddv4o13, 3' e... 1324 0.0 2 (BJ429088) Dictyostelium discoideum cDNA clone:ddv2g11, 3' e... 1324 0.0 1 (BJ436312) Dictyostelium discoideum cDNA clone:ddv30c22, 3' ... 1322 0.0 1 (BJ433888) Dictyostelium discoideum cDNA clone:ddv23b10, 3' ... 1322 0.0 2 (BJ432800) Dictyostelium discoideum cDNA clone:ddv19i22, 3' ... 1322 0.0 1 (BJ431028) Dictyostelium discoideum cDNA clone:ddv9j16, 3' e... 1322 0.0 2 (BJ373777) Dictyostelium discoideum cDNA clone:ddc4n23, 3' e... 1322 0.0 1 (BJ444691) Dictyostelium discoideum cDNA clone:ddv57m04, 3' ... 1320 0.0 1 (BJ433644) Dictyostelium discoideum cDNA clone:ddv22c14, 3' ... 1320 0.0 1 (BJ432849) Dictyostelium discoideum cDNA clone:ddv20e05, 3' ... 1320 0.0 1 (BJ435407) Dictyostelium discoideum cDNA clone:ddv27d05, 3' ... 1318 0.0 2 (BJ432530) Dictyostelium discoideum cDNA clone:ddv18p20, 3' ... 1318 0.0 2 (BJ430472) Dictyostelium discoideum cDNA clone:ddv7j11, 3' e... 1318 0.0 2 (BJ429727) Dictyostelium discoideum cDNA clone:ddv4n14, 3' e... 1318 0.0 2 (BJ428479) Dictyostelium discoideum cDNA clone:ddv12h06, 3' ... 1318 0.0 2 (BJ375456) Dictyostelium discoideum cDNA clone:ddc18d22, 3' ... 1318 0.0 2 (BJ373889) Dictyostelium discoideum cDNA clone:ddc5a12, 3' e... 1318 0.0 2 (BJ433065) Dictyostelium discoideum cDNA clone:ddv20m17, 3' ... 1316 0.0 1 (BJ432272) Dictyostelium discoideum cDNA clone:ddv18p01, 3' ... 1316 0.0 2
>(X55973) D. discoideum EF1-I gene for elongation factor 1 alpha. Length = 1686
Score = 1481 bits (747), Expect(2) = 0.0 Identities = 750/751 (99%) Strand = Plus / Plus
Query: 391 cccaatctcaggttggaatggtgataacatgttagaaagatccgacaaaatggaatggta 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 909 cccaatctcaggttggaatggtgataacatgttagaaagatccgacaaaatggaatggta 968
Query: 451 caaaggtccaactttattagaagccctcgatgccatcgtcgaaccaaaacgtccacacga 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 969 caaaggtccaactttattagaagccctcgatgccatcgtcgaaccaaaacgtccacacga 1028
Query: 511 taaaccattacgtattccattacaagatgtctacaagatcggtggtatcggtactgttcc 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1029 taaaccattacgtattccattacaagatgtctacaagatcggtggtatcggtactgttcc 1088
Query: 571 agtaggtcgtgtcgaaactggtatcattaaaccaggtatggtcgtcacctttgccccagc 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1089 agtaggtcgtgtcgaaactggtatcattaaaccaggtatggtcgtcacctttgccccagc 1148
Query: 631 tggtctctcaactgaagtcaaatcagtcgaaatgcatcacgaacaactcccagaagcccg 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1149 tggtctctcaactgaagtcaaatcagtcgaaatgcatcacgaacaactcccagaagcccg 1208
Query: 691 tccaggtgacaatgtaggtttcaacgttaaaaacgtttcagtcaaagaaattaaaagagg 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1209 tccaggtgacaatgtaggtttcaacgttaaaaacgtttcagtcaaagaaattaaaagagg 1268
Query: 751 tatggtcgctggtgactccaaaaacgatccaccacaagaaactgaaaaattcgttgctca 810 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1269 tatggtcgctggtgactccaaaaacgatccaccacaagaaactgaaaaattcgttgctca 1328
Query: 811 agttatcgtcctcaaccatccaggtcaaatccatgccggttactcaccagtcttagattg 870 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1329 agttatcgtcctcaaccatccaggtcaaatccatgctggttactcaccagtcttagattg 1388
Query: 871 tcacactgctcacattgcctgtaaattcactgaaatcgtcgataaagttgatcgtcgtac 930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1389 tcacactgctcacattgcctgtaaattcactgaaatcgtcgataaagttgatcgtcgtac 1448
Query: 931 tggtgccgtcgttgccaaagaaggtactgccgccgtcgtcttaaagaatggtgatgccgc 990 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1449 tggtgccgtcgttgccaaagaaggtactgccgccgtcgtcttaaagaatggtgatgccgc 1508
Query: 991 tatggtcgaattaaccccatctcgtccaatgtgtgttgaatccttcactgaatacccacc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1509 tatggtcgaattaaccccatctcgtccaatgtgtgttgaatccttcactgaatacccacc 1568
Query: 1051 attaggtcgtttcgccgtcagagatatgagacaaaccgtcgccgtcggtgtcatcaaatc 1110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1569 attaggtcgtttcgccgtcagagatatgagacaaaccgtcgccgtcggtgtcatcaaatc 1628
Query: 1111 aaccgtcaagaaagccccaggtaaagccggt 1141 ||||||||||||||||||||||||||||||| Sbjct: 1629 aaccgtcaagaaagccccaggtaaagccggt 1659
Score = 50.1 bits (25), Expect(2) = 0.0 Identities = 25/25 (100%) Strand = Plus / Plus
Query: 1142 ataagaaaggtgctgctgccccatc 1166 ||||||||||||||||||||||||| Sbjct: 1661 ataagaaaggtgctgctgccccatc 1685
Score = 692 bits (349), Expect = 0.0 Identities = 349/349 (100%) Strand = Plus / Plus
Query: 47 gagaaaactcacattaacattgtcgtcattggtcacgtagatgctggtaaatcaaccacc 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 gagaaaactcacattaacattgtcgtcattggtcacgtagatgctggtaaatcaaccacc 405
Query: 107 actggtcatttaatctacaaatgtggtggtatcgataagagagttatcgaaaagtatgaa 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 actggtcatttaatctacaaatgtggtggtatcgataagagagttatcgaaaagtatgaa 465
Query: 167 aaggaagcttctgaaatgggtaaacaatccttcaaatacgcctgggttatggataaatta 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 aaggaagcttctgaaatgggtaaacaatccttcaaatacgcctgggttatggataaatta 525
Query: 227 aaggctgaacgtgaaagaggtatcaccatcgatattgctttatggaaattcgaaacctcc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 aaggctgaacgtgaaagaggtatcaccatcgatattgctttatggaaattcgaaacctcc 585
Query: 287 aaatactacttcaccatcattgatgccccaggtcacagagatttcatcaagaatatgatt 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 aaatactacttcaccatcattgatgccccaggtcacagagatttcatcaagaatatgatt 645
Query: 347 actggtacctcccaagccgattgtgccgtcttagtcattgcctccccaa 395 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 actggtacctcccaagccgattgtgccgtcttagtcattgcctccccaa 694
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,133,195,237 Number of extensions: 68032877 Number of successful extensions: 5969403 Number of sequences better than 10.0: 236947 Length of query: 1185 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1161 Effective length of database: 97,308,875,965 Effective search space: 112975604995365 Effective search space used: 112975604995365 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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Homology vs Protein |
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