NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06051-1
Contig ID Contig-U06051-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06051-1 (Contig-U06051-1Q) /CSM_Contig/Contig-U06051-1Q.Seq.d
GTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAA
GCTCCACGTCACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAG
ACATCAAGGTAAAGTCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAG
TCCACTTAACTGCATTCATGGGTTACAAAGCTGGTATGACTCACGTTGTC
AGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAGAAATCGTTGA
AGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG
GTTATGTTGAAACCGCTCAACATTTACGTGATAACTTCCGTAGAAGATTA
TACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTTTCACCAAATACGT
TAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTCTCC
AAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAA
GTTCACAAATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCA
AGTCAATGGTGGTTCAATCGTCGAAAAAGTTAACTTTGCTGTTGCCAACT
TTGAAA
Gap no gap
Contig length 606
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 945163
End point 944557
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06051
List of clone(s) 

est1=VFC695F,1,607
Translated Amino Acid sequence 
*SLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKA
GMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQHLRDNFRRRLYKNW
YKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLKLTQKKAHVL
EIQVNGGSIVEKVNFAVANFE
Translated Amino Acid sequence (All Frames) 
Frame A:
vshf*ttiti*vivnlklhvtvisvsdqereppdikvksshsqrmtvpkkst*lhswvtk
lv*ltlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlkplniyvitsvedytkt
gtnqnqrklspntlnntklkkvknqlkplskpskrdvqssvslltlkftn*n*lkrkhts
lksksmvvqsskkltlllptlk


Frame B:
lvtskqq*qyess*i*sstsr*srfqtkkesrqtsr*sqvipkg*pypksplncihglqs
wydsrcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrstft**lp*kiiqkl
vqikikesfhqir*tirn*rr*kin*slspshqkemfsrpchcshsssqikinskestrp
*npsqwwfnrrks*lcccql*


Frame C:
*SLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKA
GMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQHLRDNFRRRLYKNW
YKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLKLTQKKAHVL
EIQVNGGSIVEKVNFAVANFE
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06051-1 (Contig-U06051-1Q)
/CSM_Contig/Contig-U06051-1Q.Seq.d
         (606 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06051-1 (Contig-U06051-1Q) /CSM_Contig/Conti...  1201  0.0
Contig-U10445-1 (Contig-U10445-1Q) /CSM_Contig/Conti...   634  0.0
Contig-U10126-1 (Contig-U10126-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U14805-1 (Contig-U14805-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U11123-1 (Contig-U11123-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U10335-1 (Contig-U10335-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U09731-1 (Contig-U09731-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U09566-1 (Contig-U09566-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U01903-1 (Contig-U01903-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U14683-1 (Contig-U14683-1Q) /CSM_Contig/Conti...    32  0.66

>Contig-U06051-1 (Contig-U06051-1Q) /CSM_Contig/Contig-U06051-1Q.Seq.d
          Length = 606

 Score = 1201 bits (606), Expect = 0.0
 Identities = 606/606 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttagtcacttctaaacaacaataacaatatgagtcatcgtaaatttgaagctccacgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttagtcacttctaaacaacaataacaatatgagtcatcgtaaatttgaagctccacgtc 60

                                                                       
Query: 61  acggtaatctcggtttcagaccaagaaagagagccgccagacatcaaggtaaagtcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acggtaatctcggtttcagaccaagaaagagagccgccagacatcaaggtaaagtcaagt 120

                                                                       
Query: 121 cattcccaaaggatgaccgtacccaaaaagtccacttaactgcattcatgggttacaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cattcccaaaggatgaccgtacccaaaaagtccacttaactgcattcatgggttacaaag 180

                                                                       
Query: 181 ctggtatgactcacgttgtcagagatttagaaaaaccaggttcaaagatgcacaaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctggtatgactcacgttgtcagagatttagaaaaaccaggttcaaagatgcacaaaaaag 240

                                                                       
Query: 241 aaatcgttgaagccgtcaccatcattgaatgtccaccaatgtacattgttggtttagttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatcgttgaagccgtcaccatcattgaatgtccaccaatgtacattgttggtttagttg 300

                                                                       
Query: 301 gttatgttgaaaccgctcaacatttacgtgataacttccgtagaagattatacaaaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttatgttgaaaccgctcaacatttacgtgataacttccgtagaagattatacaaaaact 360

                                                                       
Query: 361 ggtacaaatcaaaatcaaagaaagctttcaccaaatacgttaaacaatacgaaactgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtacaaatcaaaatcaaagaaagctttcaccaaatacgttaaacaatacgaaactgaag 420

                                                                       
Query: 421 aaggtaaaaaatcaattgaagcctctctccaagccatcaaaaagagatgttcagtcgtcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaggtaaaaaatcaattgaagcctctctccaagccatcaaaaagagatgttcagtcgtcc 480

                                                                       
Query: 481 gtgtcattgctcacactcaagttcacaaattaaaattaactcaaaagaaagcacacgtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtgtcattgctcacactcaagttcacaaattaaaattaactcaaaagaaagcacacgtcc 540

                                                                       
Query: 541 ttgaaatccaagtcaatggtggttcaatcgtcgaaaaagttaactttgctgttgccaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgaaatccaagtcaatggtggttcaatcgtcgaaaaagttaactttgctgttgccaact 600

                 
Query: 601 ttgaaa 606
           ||||||
Sbjct: 601 ttgaaa 606


>Contig-U10445-1 (Contig-U10445-1Q) /CSM_Contig/Contig-U10445-1Q.Seq.d
          Length = 1206

 Score =  634 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttagtcacttctaaacaacaataacaatatgagtcatcgtaaatttgaagctccacgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttagtcacttctaaacaacaataacaatatgagtcatcgtaaatttgaagctccacgtc 60

                                                                       
Query: 61  acggtaatctcggtttcagaccaagaaagagagccgccagacatcaaggtaaagtcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acggtaatctcggtttcagaccaagaaagagagccgccagacatcaaggtaaagtcaagt 120

                                                                       
Query: 121 cattcccaaaggatgaccgtacccaaaaagtccacttaactgcattcatgggttacaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cattcccaaaggatgaccgtacccaaaaagtccacttaactgcattcatgggttacaaag 180

                                                                       
Query: 181 ctggtatgactcacgttgtcagagatttagaaaaaccaggttcaaagatgcacaaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctggtatgactcacgttgtcagagatttagaaaaaccaggttcaaagatgcacaaaaaag 240

                                                                       
Query: 241 aaatcgttgaagccgtcaccatcattgaatgtccaccaatgtacattgttggtttagttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatcgttgaagccgtcaccatcattgaatgtccaccaatgtacattgttggtttagttg 300

                               
Query: 301 gttatgttgaaaccgctcaa 320
           ||||||||||||||||||||
Sbjct: 301 gttatgttgaaaccgctcaa 320


 Score =  557 bits (281), Expect = e-159
 Identities = 291/293 (99%), Gaps = 1/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 315 gctcaacatttacgtgataacttccgtagaagattatacaaaaactggtacaaatcaaaa 374
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gctcaacatttaagtgataacttccgtagaagattatacaaaaactggtacaaatcaaaa 407

                                                                       
Query: 375 tcaaagaaagctttcaccaaatacgttaaacaatacgaaactgaagaaggtaaaaaatca 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcaaagaaagctttcaccaaatacgttaaacaatacgaaactgaagaaggtaaaaaatca 467

                                                                       
Query: 435 attgaagcctctctccaagccatcaaaaagagatgttcagtcgtccgtgtcattgctcac 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 attgaagcctctctccaagccatcaaaaagagatgttcagtcgtccgtgtcattgctcac 527

                                                                       
Query: 495 ac-tcaagttcacaaattaaaattaactcaaaagaaagcacacgtccttgaaatccaagt 553
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acttcaagttcacaaattaaaattaactcaaaagaaagcacacgtccttgaaatccaagt 587

                                                                
Query: 554 caatggtggttcaatcgtcgaaaaagttaactttgctgttgccaactttgaaa 606
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 caatggtggttcaatcgtcgaaaaagttaactttgctgttgccaactttgaaa 640


 Score = 30.2 bits (15), Expect = 2.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 81   ccaagaaagagagcc 95
            |||||||||||||||
Sbjct: 1012 ccaagaaagagagcc 1026


>Contig-U10126-1 (Contig-U10126-1Q) /CSM_Contig/Contig-U10126-1Q.Seq.d
          Length = 1237

 Score = 36.2 bits (18), Expect = 0.042
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 507 aaattaaaattaactcaa 524
           ||||||||||||||||||
Sbjct: 886 aaattaaaattaactcaa 903


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6791
Number of Sequences: 6905
Number of extensions: 6791
Number of successful extensions: 953
Number of sequences better than 10.0: 90
length of query: 606
length of database: 5,674,871
effective HSP length: 16
effective length of query: 590
effective length of database: 5,564,391
effective search space: 3282990690
effective search space used: 3282990690
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 7
Homology vs DNA 
Query= Contig-U06051-1 (Contig-U06051-1Q) /CSM_Contig/Contig-U06051-1Q.Seq.d
         (606 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ412088) Dictyostelium discoideum cDNA clone:ddv6m24, 5' e...  1201   0.0    1
(BJ416918) Dictyostelium discoideum cDNA clone:ddv27c23, 5' ...   634   0.0    2
(BJ416885) Dictyostelium discoideum cDNA clone:ddv27l15, 5' ...   634   0.0    2
(BJ416406) Dictyostelium discoideum cDNA clone:ddv26h10, 5' ...   634   0.0    2
(BJ416326) Dictyostelium discoideum cDNA clone:ddv25e24, 5' ...   634   0.0    2
(BJ416150) Dictyostelium discoideum cDNA clone:ddv25j03, 5' ...   634   0.0    2
(BJ415860) Dictyostelium discoideum cDNA clone:ddv24a02, 5' ...   634   0.0    2
(BJ415609) Dictyostelium discoideum cDNA clone:ddv23j02, 5' ...   634   0.0    2
(BJ415246) Dictyostelium discoideum cDNA clone:ddv21o21, 5' ...   634   0.0    2
(BJ415118) Dictyostelium discoideum cDNA clone:ddv21a15, 5' ...   634   0.0    3
(BJ414979) Dictyostelium discoideum cDNA clone:ddv21f01, 5' ...   634   0.0    3
(BJ414101) Dictyostelium discoideum cDNA clone:ddv18g03, 5' ...   634   0.0    2
(BJ414093) Dictyostelium discoideum cDNA clone:ddv18e03, 5' ...   634   0.0    2
(BJ413955) Dictyostelium discoideum cDNA clone:ddv17c17, 5' ...   634   0.0    2
(BJ413881) Dictyostelium discoideum cDNA clone:ddv17d07, 5' ...   634   0.0    2
(BJ413430) Dictyostelium discoideum cDNA clone:ddv15e17, 5' ...   634   0.0    4
(BJ413329) Dictyostelium discoideum cDNA clone:ddv15i04, 5' ...   634   0.0    2
(BJ413050) Dictyostelium discoideum cDNA clone:ddv14b06, 5' ...   634   0.0    3
(BJ413003) Dictyostelium discoideum cDNA clone:ddv13e19, 5' ...   634   0.0    2
(BJ412826) Dictyostelium discoideum cDNA clone:ddv13b06, 5' ...   634   0.0    2
(BJ412386) Dictyostelium discoideum cDNA clone:ddv8a08, 5' e...   634   0.0    2
(BJ411388) Dictyostelium discoideum cDNA clone:ddv4p04, 5' e...   634   0.0    2
(BJ410391) Dictyostelium discoideum cDNA clone:ddv12j08, 5' ...   634   0.0    2
(BJ410297) Dictyostelium discoideum cDNA clone:ddv12a04, 5' ...   634   0.0    2
(BJ410134) Dictyostelium discoideum cDNA clone:ddv11h12, 5' ...   634   0.0    2
(BJ410090) Dictyostelium discoideum cDNA clone:ddv11m06, 5' ...   634   0.0    2
(BJ391001) Dictyostelium discoideum cDNA clone:dds14h15, 5' ...   634   0.0    2
(BJ390918) Dictyostelium discoideum cDNA clone:dds14b10, 5' ...   634   0.0    4
(BJ390228) Dictyostelium discoideum cDNA clone:dds21j18, 5' ...   634   0.0    5
(BJ387105) Dictyostelium discoideum cDNA clone:dds12j10, 5' ...   634   0.0    3
(BJ362049) Dictyostelium discoideum cDNA clone:ddc19l22, 5' ...   634   0.0    2
(BJ329816) Dictyostelium discoideum cDNA clone:dda26k10, 5' ...   634   0.0    4
(BJ329321) Dictyostelium discoideum cDNA clone:dda24e17, 5' ...   634   0.0    6
(BJ328726) Dictyostelium discoideum cDNA clone:dda29p04, 5' ...   634   0.0    2
(BJ325900) Dictyostelium discoideum cDNA clone:dda2j23, 5' e...   634   0.0    3
(BJ325791) Dictyostelium discoideum cDNA clone:dda2e09, 5' e...   634   0.0    2
(BJ416951) Dictyostelium discoideum cDNA clone:ddv27k19, 5' ...   628   0.0    4
(BJ416524) Dictyostelium discoideum cDNA clone:ddv26o15, 5' ...   628   0.0    4
(BJ416516) Dictyostelium discoideum cDNA clone:ddv26m16, 5' ...   628   0.0    3
(BJ415956) Dictyostelium discoideum cDNA clone:ddv24f10, 5' ...   628   0.0    2
(BJ415842) Dictyostelium discoideum cDNA clone:ddv23n19, 5' ...   628   0.0    2
(BJ415722) Dictyostelium discoideum cDNA clone:ddv23b18, 5' ...   628   0.0    4
(BJ415437) Dictyostelium discoideum cDNA clone:ddv22g15, 5' ...   628   0.0    2
(BJ415186) Dictyostelium discoideum cDNA clone:ddv21a24, 5' ...   628   0.0    2
(BJ414186) Dictyostelium discoideum cDNA clone:ddv18h10, 5' ...   628   0.0    2
(BJ413977) Dictyostelium discoideum cDNA clone:ddv17i16, 5' ...   628   0.0    2
(BJ413949) Dictyostelium discoideum cDNA clone:ddv17b16, 5' ...   628   0.0    2
(BJ413821) Dictyostelium discoideum cDNA clone:ddv17g03, 5' ...   628   0.0    2
(BJ413372) Dictyostelium discoideum cDNA clone:ddv15e09, 5' ...   628   0.0    3
(BJ413320) Dictyostelium discoideum cDNA clone:ddv15g04, 5' ...   628   0.0    2
(BJ413316) Dictyostelium discoideum cDNA clone:ddv15f03, 5' ...   628   0.0    3
(BJ412996) Dictyostelium discoideum cDNA clone:ddv13c21, 5' ...   628   0.0    2
(BJ412656) Dictyostelium discoideum cDNA clone:ddv9k11, 5' e...   628   0.0    3
(BJ412343) Dictyostelium discoideum cDNA clone:ddv8b03, 5' e...   628   0.0    2
(BJ412230) Dictyostelium discoideum cDNA clone:ddv7p09, 5' e...   628   0.0    2
(BJ412135) Dictyostelium discoideum cDNA clone:ddv7g04, 5' e...   628   0.0    2
(BJ411831) Dictyostelium discoideum cDNA clone:ddv6a06, 5' e...   628   0.0    2
(BJ411419) Dictyostelium discoideum cDNA clone:ddv4h09, 5' e...   628   0.0    2
(BJ411356) Dictyostelium discoideum cDNA clone:ddv4g04, 5' e...   628   0.0    2
(BJ410451) Dictyostelium discoideum cDNA clone:ddv12i15, 5' ...   628   0.0    2
(BJ390890) Dictyostelium discoideum cDNA clone:dds14i04, 5' ...   628   0.0    2
(BJ389678) Dictyostelium discoideum cDNA clone:dds19m14, 5' ...   628   0.0    4
(BJ388235) Dictyostelium discoideum cDNA clone:dds8g16, 5' e...   628   0.0    2
(BJ360602) Dictyostelium discoideum cDNA clone:ddc6m23, 5' e...   628   0.0    3
(BJ323620) Dictyostelium discoideum cDNA clone:dda11n07, 5' ...   628   0.0    2
(BJ414119) Dictyostelium discoideum cDNA clone:ddv18j05, 5' ...   626   0.0    2
(BJ413339) Dictyostelium discoideum cDNA clone:ddv15k04, 5' ...   626   0.0    2
(BJ410340) Dictyostelium discoideum cDNA clone:ddv12l05, 5' ...   626   0.0    2
(BJ386790) Dictyostelium discoideum cDNA clone:dds10o17, 5' ...   626   0.0    2
(BJ415869) Dictyostelium discoideum cDNA clone:ddv24b05, 5' ...   624   0.0    2
(BJ416680) Dictyostelium discoideum cDNA clone:ddv26n04, 5' ...   622   0.0    4
(BJ415861) Dictyostelium discoideum cDNA clone:ddv24a03, 5' ...   622   0.0    2
(BJ415135) Dictyostelium discoideum cDNA clone:ddv21d18, 5' ...   622   0.0    2
(BJ415122) Dictyostelium discoideum cDNA clone:ddv21b14, 5' ...   622   0.0    3
(BJ414194) Dictyostelium discoideum cDNA clone:ddv18i12, 5' ...   622   0.0    3
(BJ412120) Dictyostelium discoideum cDNA clone:ddv7d04, 5' e...   622   0.0    2
(BJ390205) Dictyostelium discoideum cDNA clone:dds21d15, 5' ...   622   0.0    4
(BJ418169) Dictyostelium discoideum cDNA clone:ddv31j22, 5' ...   620   0.0    2
(BJ416780) Dictyostelium discoideum cDNA clone:ddv27c12, 5' ...   620   0.0    2
(BJ416602) Dictyostelium discoideum cDNA clone:ddv26n24, 5' ...   620   0.0    2
(BJ416257) Dictyostelium discoideum cDNA clone:ddv25p11, 5' ...   620   0.0    3
(BJ415772) Dictyostelium discoideum cDNA clone:ddv23n15, 5' ...   620   0.0    2
(BJ415747) Dictyostelium discoideum cDNA clone:ddv23h16, 5' ...   620   0.0    2
(BJ415274) Dictyostelium discoideum cDNA clone:ddv22e04, 5' ...   620   0.0    2
(BJ415004) Dictyostelium discoideum cDNA clone:ddv21k02, 5' ...   620   0.0    2
(BJ414199) Dictyostelium discoideum cDNA clone:ddv18k08, 5' ...   620   0.0    2
(BJ414064) Dictyostelium discoideum cDNA clone:ddv17o21, 5' ...   620   0.0    2
(BJ413950) Dictyostelium discoideum cDNA clone:ddv17b17, 5' ...   620   0.0    2
(BJ413256) Dictyostelium discoideum cDNA clone:ddv14i19, 5' ...   620   0.0    2
(BJ413212) Dictyostelium discoideum cDNA clone:ddv14j13, 5' ...   620   0.0    2
(BJ413059) Dictyostelium discoideum cDNA clone:ddv14e01, 5' ...   620   0.0    3
(BJ412698) Dictyostelium discoideum cDNA clone:ddv9d17, 5' e...   620   0.0    2
(BJ412644) Dictyostelium discoideum cDNA clone:ddv9h09, 5' e...   620   0.0    2
(BJ412553) Dictyostelium discoideum cDNA clone:ddv9c04, 5' e...   620   0.0    3
(BJ412494) Dictyostelium discoideum cDNA clone:ddv8a20, 5' e...   620   0.0    2
(BJ412416) Dictyostelium discoideum cDNA clone:ddv8j10, 5' e...   620   0.0    2
(BJ412212) Dictyostelium discoideum cDNA clone:ddv7k09, 5' e...   620   0.0    2
(BJ412058) Dictyostelium discoideum cDNA clone:ddv6f22, 5' e...   620   0.0    2
(BJ412054) Dictyostelium discoideum cDNA clone:ddv6e22, 5' e...   620   0.0    2
(BJ412027) Dictyostelium discoideum cDNA clone:ddv6n17, 5' e...   620   0.0    2

>(BJ412088) Dictyostelium discoideum cDNA clone:ddv6m24, 5' end,
           single read.
          Length = 607

 Score = 1201 bits (606), Expect = 0.0
 Identities = 606/606 (100%)
 Strand = Plus / Plus


Query: 1   gttagtcacttctaaacaacaataacaatatgagtcatcgtaaatttgaagctccacgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttagtcacttctaaacaacaataacaatatgagtcatcgtaaatttgaagctccacgtc 60


Query: 61  acggtaatctcggtttcagaccaagaaagagagccgccagacatcaaggtaaagtcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acggtaatctcggtttcagaccaagaaagagagccgccagacatcaaggtaaagtcaagt 120


Query: 121 cattcccaaaggatgaccgtacccaaaaagtccacttaactgcattcatgggttacaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cattcccaaaggatgaccgtacccaaaaagtccacttaactgcattcatgggttacaaag 180


Query: 181 ctggtatgactcacgttgtcagagatttagaaaaaccaggttcaaagatgcacaaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctggtatgactcacgttgtcagagatttagaaaaaccaggttcaaagatgcacaaaaaag 240


Query: 241 aaatcgttgaagccgtcaccatcattgaatgtccaccaatgtacattgttggtttagttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaatcgttgaagccgtcaccatcattgaatgtccaccaatgtacattgttggtttagttg 300


Query: 301 gttatgttgaaaccgctcaacatttacgtgataacttccgtagaagattatacaaaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttatgttgaaaccgctcaacatttacgtgataacttccgtagaagattatacaaaaact 360


Query: 361 ggtacaaatcaaaatcaaagaaagctttcaccaaatacgttaaacaatacgaaactgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtacaaatcaaaatcaaagaaagctttcaccaaatacgttaaacaatacgaaactgaag 420


Query: 421 aaggtaaaaaatcaattgaagcctctctccaagccatcaaaaagagatgttcagtcgtcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaggtaaaaaatcaattgaagcctctctccaagccatcaaaaagagatgttcagtcgtcc 480


Query: 481 gtgtcattgctcacactcaagttcacaaattaaaattaactcaaaagaaagcacacgtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtgtcattgctcacactcaagttcacaaattaaaattaactcaaaagaaagcacacgtcc 540


Query: 541 ttgaaatccaagtcaatggtggttcaatcgtcgaaaaagttaactttgctgttgccaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgaaatccaagtcaatggtggttcaatcgtcgaaaaagttaactttgctgttgccaact 600


Query: 601 ttgaaa 606
           ||||||
Sbjct: 601 ttgaaa 606

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 687,382,095
Number of extensions: 39011696
Number of successful extensions: 3269722
Number of sequences better than 10.0: 6137
Length of query: 606
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 583
Effective length of database: 93,106,754,628
Effective search space: 54281237948124
Effective search space used: 54281237948124
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U06051-1 (Contig-U06051-1Q) /CSM_Contig/Contig-U06051-1Q.Seq.d
         (606 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   378   e-104
EF146052_1(EF146052|pid:none) Populus trichocarpa clone WS0115_D...   272   6e-72
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407....   271   1e-71
EF144245_1(EF144245|pid:none) Populus trichocarpa clone PX0011_L...   270   3e-71
(P22738) RecName: Full=60S ribosomal protein L3-2;  &AC005850_7(...   269   4e-71
JQ0772(JQ0772) ribosomal protein L3.e (clone ARP2), cytosolic - ...   268   9e-71
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib...   268   9e-71
EF145479_1(EF145479|pid:none) Populus trichocarpa clone WS01125_...   268   9e-71
AM452874_1(AM452874|pid:none) Vitis vinifera contig VV78X187512....   266   3e-70
AC125473_1(AC125473|pid:none) Medicago truncatula clone mth2-8j1...   266   4e-70
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   265   7e-70
CR926481_1(CR926481|pid:none) Pongo abelii mRNA; cDNA DKFZp468G0...   265   1e-69
BC008492_1(BC008492|pid:none) Homo sapiens ribosomal protein L3,...   265   1e-69
(P39023) RecName: Full=60S ribosomal protein L3; AltName: Full=H...   265   1e-69
AJ248327_1(AJ248327|pid:none) Medicago sativa subsp. X varia mRN...   265   1e-69
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   264   2e-69
(Q8NKF4) RecName: Full=60S ribosomal protein L3; AltName: Allerg...   263   3e-69
(P36584) RecName: Full=60S ribosomal protein L3-B;  &AL590902_6(...   263   3e-69
AK151142_1(AK151142|pid:none) Mus musculus bone marrow macrophag...   263   4e-69
(P40372) RecName: Full=60S ribosomal protein L3-A;  &CU329670_72...   263   4e-69
AJ238851_1(AJ238851|pid:none) Bos taurus rpl3 gene for ribosomal...   263   4e-69
(P39872) RecName: Full=60S ribosomal protein L3;  &BC102253_1(BC...   263   4e-69
AK151084_1(AK151084|pid:none) Mus musculus bone marrow macrophag...   262   5e-69
AK151426_1(AK151426|pid:none) Mus musculus bone marrow macrophag...   262   5e-69
EF640715_1(EF640715|pid:none) Prunus dulcis clone Pdbcs-E64 puta...   262   5e-69
BT070919_1(BT070919|pid:none) Picea sitchensis clone WS02759_D23...   262   5e-69
AK151057_1(AK151057|pid:none) Mus musculus bone marrow macrophag...   262   5e-69
BT043755_1(BT043755|pid:none) Salmo salar clone HM6_0985 ribosom...   262   6e-69
(P21531) RecName: Full=60S ribosomal protein L3; AltName: Full=L...   262   6e-69
(P17094) RecName: Full=60S ribosomal protein L3-1; AltName: Full...   261   8e-69
AK230258_1(AK230258|pid:none) Arabidopsis thaliana mRNA for hypo...   261   8e-69
BT074678_1(BT074678|pid:none) Osmerus mordax clone omor-eva-515-...   261   8e-69
EF083839_1(EF083839|pid:none) Picea sitchensis clone WS0283_E02 ...   261   1e-68
AF198447_1(AF198447|pid:none) Emericella nidulans 60S ribosomal ...   260   2e-68
BC151555_1(BC151555|pid:none) Bos taurus ribosomal protein L3, m...   260   2e-68
AK172280_1(AK172280|pid:none) Mus musculus activated spleen cDNA...   260   2e-68
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM...   259   3e-68
AF464911_1(AF464911|pid:none) Aspergillus fumigatus large subuni...   259   3e-68
AY343328_1(AY343328|pid:none) Triticum aestivum ribosomal protei...   259   3e-68
EU960752_1(EU960752|pid:none) Zea mays clone 228300 unknown mRNA.     259   3e-68
AF401554_1(AF401554|pid:none) Ictalurus punctatus ribosomal prot...   259   4e-68
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM...   259   4e-68
(P59671) RecName: Full=60S ribosomal protein L3;  &BX284750_4(BX...   259   4e-68
AE017351_220(AE017351|pid:none) Cryptococcus neoformans var. neo...   259   5e-68
AF526241_1(AF526241|pid:none) Chlamys farreri clone iolscfcl1ct2...   258   9e-68
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei...   258   9e-68
(P35684) RecName: Full=60S ribosomal protein L3;  &AK060925_1(AK...   258   9e-68
BC091460_1(BC091460|pid:none) Danio rerio ribosomal protein L3, ...   257   2e-67
AB374542_1(AB374542|pid:none) Solea senegalensis RPL3 mRNA for r...   256   3e-67
AM920435_1418(AM920435|pid:none) Penicillium chrysogenum Wiscons...   256   4e-67
AC120527_7(AC120527|pid:none) Oryza sativa (japonica cultivar-gr...   256   4e-67
CU638743_577(CU638743|pid:none) Podospora anserina genomic DNA c...   255   6e-67
EU558352_1(EU558352|pid:none) Phoronis muelleri putative 60S rib...   255   6e-67
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM...   254   1e-66
AY561514_1(AY561514|pid:none) Danio rerio ribosomal protein L3 (...   254   1e-66
M90054_1(M90054|pid:none) Human ribosomal protein L3 mRNA, 3' end.    254   1e-66
CP000581_50(CP000581|pid:none) Ostreococcus lucimarinus CCE9901 ...   251   1e-65
(P50880) RecName: Full=60S ribosomal protein L3;  &T19771(T19771...   250   2e-65
BT077039_1(BT077039|pid:none) Caligus rogercresseyi clone crog-e...   249   4e-65
BC082692_1(BC082692|pid:none) Xenopus laevis hypothetical LOC494...   249   4e-65
(O16797) RecName: Full=60S ribosomal protein L3;  &AE014297_1301...   248   9e-65
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15...   248   9e-65
(Q9NBK4) RecName: Full=60S ribosomal protein L3;                      247   2e-64
EU558305_1(EU558305|pid:none) Novocrania anomala putative 60S ri...   245   6e-64
(Q6FTJ2) RecName: Full=60S ribosomal protein L3;  &CR380953_81(C...   243   4e-63
BT080849_1(BT080849|pid:none) Caligus clemensi clone ccle-evs-52...   243   4e-63
(Q6BXM5) RecName: Full=60S ribosomal protein L3;  &CR382134_77(C...   242   5e-63
J01351_1(J01351|pid:none) S.cerevisiae ribosomal protein L3 (tcm...   241   1e-62
DQ440217_1(DQ440217|pid:none) Aedes aegypti clone AET-2405 ribos...   240   2e-62
BC080121_1(BC080121|pid:none) Xenopus laevis MGC84749 protein, m...   239   4e-62
FN392322_133(FN392322|pid:none) Pichia pastoris GS115 chromosome...   238   1e-61
(Q92901) RecName: Full=60S ribosomal protein L3-like;  &BC050413...   237   2e-61
(Q3SZ10) RecName: Full=60S ribosomal protein L3-like;  &BC103272...   236   3e-61
CR382129_805(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...   236   3e-61
CP001574_698(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   236   5e-61
AK313162_1(AK313162|pid:none) Homo sapiens cDNA, FLJ93657, highl...   235   6e-61
FN323065_1(FN323065|pid:none) Schistosoma japonicum isolate Anhu...   235   8e-61
AY223152_1(AY223152|pid:none) Schistosoma japonicum SJCHGC06297 ...   235   8e-61
FN316316_1(FN316316|pid:none) Schistosoma japonicum isolate Anhu...   235   8e-61
FN316324_1(FN316324|pid:none) Schistosoma japonicum isolate Anhu...   235   8e-61
FN323052_1(FN323052|pid:none) Schistosoma japonicum isolate Anhu...   235   8e-61
CU928174_671(CU928174|pid:none) Zygosaccharomyces rouxii strain ...   234   1e-60
AY236158_1(AY236158|pid:none) Oryza sativa (indica cultivar-grou...   234   1e-60
FN357411_20(FN357411|pid:none) Schistosoma mansoni genome sequen...   233   3e-60
FN316317_1(FN316317|pid:none) Schistosoma japonicum isolate Anhu...   233   4e-60
CR940347_663(CR940347|pid:none) Theileria annulata strain Ankara...   232   7e-60
AE014185_269(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...   229   3e-59
AX885973_1(AX885973|pid:none) Sequence 1836 from Patent EP1033401.    226   5e-58
FN323057_1(FN323057|pid:none) Schistosoma japonicum isolate Anhu...   223   3e-57
Z49936_3(Z49936|pid:none) Caenorhabditis elegans Cosmid F13B10, ...   217   2e-55
BC022790_1(BC022790|pid:none) Homo sapiens, clone IMAGE:3538792,...   214   1e-54
AC091702_56(AC091702|pid:none) Trypanosoma brucei chromosome 4 c...   211   1e-53
AM502250_369(AM502250|pid:none) Leishmania infantum chromosome 32.    210   2e-53
AY973260_1(AY973260|pid:none) Leishmania major ribosomal protein...   210   2e-53
AF225211_1(AF225211|pid:none) Trypanoplasma borreli ribosomal pr...   210   3e-53
AM502250_370(AM502250|pid:none) Leishmania infantum chromosome 3...   209   6e-53
BT047366_1(BT047366|pid:none) Salmo salar clone ssal-evd-557-296...   203   3e-51
AM494957_248(AM494957|pid:none) Leishmania braziliensis chromoso...   188   1e-46
DQ263743_1(DQ263743|pid:none) Mytilus edulis ribosomal protein L...   186   4e-46
AK092695_1(AK092695|pid:none) Homo sapiens cDNA FLJ35376 fis, cl...   185   1e-45
AX885972_1(AX885972|pid:none) Sequence 1835 from Patent EP1033401.    176   4e-43
AK297711_1(AK297711|pid:none) Homo sapiens cDNA FLJ59135 complet...   175   8e-43
DQ206501_1(DQ206501|pid:none) Priapulus caudatus isolate TOA20 r...   169   5e-41
DQ206525_1(DQ206525|pid:none) Suberites fuscus isolate TOA20 rib...   157   3e-37
AM494969_341(AM494969|pid:none) Leishmania braziliensis chromoso...   154   1e-36
(Q8SQI3) RecName: Full=60S ribosomal protein L3;  &AL590443_118(...   150   2e-35
AY158026_1(AY158026|pid:none) Fundulus heteroclitus ribosomal pr...   139   6e-32
AE014297_1305(AE014297|pid:none) Drosophila melanogaster chromos...   139   6e-32
FN316315_1(FN316315|pid:none) Schistosoma japonicum isolate Anhu...   119   5e-26
BC004323_1(BC004323|pid:none) Homo sapiens ribosomal protein L3,...   111   2e-23
(A6UQJ0) RecName: Full=50S ribosomal protein L3P;  &(Q9UWG2) Rec...    98   2e-19
EU116844_1(EU116844|pid:none) Sipunculus nudus putative ribosoma...    96   6e-19
(P54014) RecName: Full=50S ribosomal protein L3P;  &A64322(A6432...    96   6e-19
EU686634_11(EU686634|pid:none) Uncultured marine group II euryar...    95   2e-18
(A4FVY2) RecName: Full=50S ribosomal protein L3P;  &CP000609_33(...    91   3e-17
(O59418) RecName: Full=50S ribosomal protein L3P;  &BA000001_183...    91   3e-17
(A9A9B8) RecName: Full=50S ribosomal protein L3P;  &CP000867_111...    90   6e-17
(Q8TZZ8) RecName: Full=50S ribosomal protein L3P;  &AE009950_182...    90   6e-17
(Q4JB40) RecName: Full=50S ribosomal protein L3P;  &CP000077_559...    89   7e-17
Z49936_2(Z49936|pid:none) Caenorhabditis elegans Cosmid F13B10, ...    89   9e-17
(Q8ZW52) RecName: Full=50S ribosomal protein L3P;  &AE009441_135...    88   2e-16
(Q2NFV6) RecName: Full=50S ribosomal protein L3P;  &CP000102_877...    88   2e-16
AF247852_1(AF247852|pid:none) Caenorhabditis remanei ribosomal p...    88   2e-16
CP001365_2418(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4...    87   3e-16
(B6YSL3) RecName: Full=50S ribosomal protein L3P;  &CP000855_67(...    87   4e-16
AK317561_1(AK317561|pid:none) Arabidopsis thaliana AT1G61580 mRN...    87   4e-16
(Q8TY90) RecName: Full=50S ribosomal protein L3P;  &AE009439_415...    87   4e-16
(O26110) RecName: Full=50S ribosomal protein L3P;  &AE000666_2(A...    86   6e-16
(A1RVG3) RecName: Full=50S ribosomal protein L3P;  &CP000504_176...    85   2e-15
EU686639_1(EU686639|pid:none) Uncultured marine group II euryarc...    83   7e-15
BC085243_1(BC085243|pid:none) Mus musculus ribosomal protein L3-...    82   9e-15
(Q3IMY8) RecName: Full=50S ribosomal protein L3P;  &CR936257_241...    82   9e-15
FN323055_1(FN323055|pid:none) Schistosoma japonicum isolate Anhu...    82   2e-14
EU686610_10(EU686610|pid:none) Uncultured marine group II euryar...    81   2e-14
(Q975I1) RecName: Full=50S ribosomal protein L3P;  &BA000023_478...    81   3e-14
FN323063_1(FN323063|pid:none) Schistosoma japonicum isolate Anhu...    80   6e-14
(P20279) RecName: Full=50S ribosomal protein L3P; AltName: Full=...    80   6e-14
(A6UV68) RecName: Full=50S ribosomal protein L3P;  &CP000743_797...    80   6e-14
CP001140_1174(CP001140|pid:none) Desulfurococcus kamchatkensis 1...    79   7e-14
(A0B9X0) RecName: Full=50S ribosomal protein L3P;  &CP000477_169...    75   1e-12
CP001400_1281(CP001400|pid:none) Sulfolobus islandicus M.14.25, ...    75   2e-12
(B0R656) RecName: Full=50S ribosomal protein L3P;  &(Q9HPD4) Rec...    75   2e-12
CP001399_1368(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    74   2e-12
CP000816_960(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    74   3e-12
(A7I5N9) RecName: Full=50S ribosomal protein L3P;  &CP000780_526...    74   3e-12
AY534910_12(AY534910|pid:none) Uncultured marine group II euryar...    74   3e-12
CP000505_230(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...    72   9e-12
(A2SPK3) RecName: Full=50S ribosomal protein L3P;  &CP000559_81(...    71   2e-11
CP000866_805(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c...    71   2e-11
(Q6L1C7) RecName: Full=50S ribosomal protein L3P;  &AE017261_640...    70   5e-11
AB006961_3(AB006961|pid:none) Halobacterium halobium gene for ri...    69   8e-11
(Q18GE9) RecName: Full=50S ribosomal protein L3P;  &AM180088_191...    69   1e-10
EU016627_45(EU016627|pid:none) Uncultured Group I marine crenarc...    65   1e-09
(Q97BX7) RecName: Full=50S ribosomal protein L3P;  &BA000011_328...    65   2e-09
BC036582_1(BC036582|pid:none) Homo sapiens ribosomal protein L3,...    64   4e-09
(Q9HIQ9) RecName: Full=50S ribosomal protein L3P;  &AL445067_42(...    62   2e-08
(Q46G95) RecName: Full=50S ribosomal protein L3P;  &CP000099_103...    60   4e-08
(Q8PV50) RecName: Full=50S ribosomal protein L3P;  &AE008384_212...    59   1e-07
EU752622_1(EU752622|pid:none) Populus tremula isolate swl21-002 ...    56   7e-07
AF526233_1(AF526233|pid:none) Argopecten irradians isolate iolsa...    53   7e-06
EU686616_14(EU686616|pid:none) Uncultured marine group II euryar...    47   5e-04
FN323056_1(FN323056|pid:none) Schistosoma japonicum isolate Anhu...    41   0.029
AF346004_1(AF346004|pid:none) Lolium perenne L3 ribosomal protei...    40   0.038
EU673724_1(EU673724|pid:none) Drosophila silvestris ribosomal pr...    40   0.038
AK002393_1(AK002393|pid:none) Mus musculus adult male kidney cDN...    40   0.066
CP000923_1782(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    35   1.2
(Q8Y565) RecName: Full=Ferrochelatase;          EC=4.99.1.1; Alt...    34   2.8
(Q58611) RecName: Full=Uncharacterized protein MJ1214;  &L77117_...    34   3.6
(Q5RDE1) RecName: Full=Eukaryotic translation initiation factor ...    34   3.6
E64451(E64451)type I restriction enzyme homolog - Methanococcus ...    34   3.6
(Q8CNS1) RecName: Full=Ferrochelatase;          EC=4.99.1.1; Alt...    33   6.1
(Q5HNA5) RecName: Full=Ferrochelatase;          EC=4.99.1.1; Alt...    33   6.1
CU928173_433(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    33   6.1
(Q71XF4) RecName: Full=Ferrochelatase;          EC=4.99.1.1; Alt...    33   8.0
AE014074_233(AE014074|pid:none) Streptococcus pyogenes MGAS315, ...    33   8.0
CP000728_2828(CP000728|pid:none) Clostridium botulinum F str. La...    33   8.0
AE004092_233(AE004092|pid:none) Streptococcus pyogenes M1 GAS, c...    33   8.0
CP000109_1232(CP000109|pid:none) Thiomicrospira crunogena XCL-2,...    33   8.0

>(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254)
           &L08391_1(L08391|pid:none)
          Length = 398

 Score =  378 bits (970), Expect = e-104
 Identities = 191/203 (94%), Positives = 191/203 (94%), Gaps = 11/203 (5%)
 Frame = +3

Query: 30  MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDL 209
           MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDL
Sbjct: 1   MSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAGMTHVVRDL 60

Query: 210 EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVET-----------AQHLRDNFRRRLYK 356
           EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVET           AQHL DNFRRRLYK
Sbjct: 61  EKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSDNFRRRLYK 120

Query: 357 NWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLKLTQKKAH 536
           NWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLKLTQKKAH
Sbjct: 121 NWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLKLTQKKAH 180

Query: 537 VLEIQVNGGSIVEKVNFAVANFE 605
           VLEIQVNGGSIVEKVNFAVANFE
Sbjct: 181 VLEIQVNGGSIVEKVNFAVANFE 203

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 916,880,550
Number of extensions: 17616894
Number of successful extensions: 42208
Number of sequences better than 10.0: 178
Number of HSP's gapped: 41882
Number of HSP's successfully gapped: 180
Length of query: 202
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 80
Effective length of database: 650,044,009
Effective search space: 52003520720
Effective search space used: 52003520720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.60  gvh: 0.20  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.06
 nuc: 0.31  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U06051-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0