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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05989-1
Contig ID Contig-U05989-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05989-1 (Contig-U05989-1Q) /CSM_Contig/Contig-U05989-1Q.Seq.d
ATTAAAATTACAAATAATGATAACCGATTACCAATTTATTTACAAAAATA
TATTATTAAAATATTATGTACTCATATTGATTACTATAATAGTTTGGTTC
AAACAAATAATGTATTTAGTGATTATAGAAAAGATGAACAAGAAATAAAG
AAATTAATGATTACCGTTGCATTAGTATCAAGAGAATGGTTCAAAACATT
ATCAGATAATTTAGTTATATCAGTTGACTTTAATTTTAAAGAAAAAGGTA
AAGATCAATATTCAATTATAAAAAGTGAAAATGTTGAAACTTTAAAATTA
CATTTCGATCATGATGACCAACGATTCTATCAAATTGATAGTGATTTTAG
ACCCATTGAAATTCCAATTGAAATTGTAAATGAAAAATTAATGAAACTTT
CAATGATGGAACAAACAAATTTCAAGTACCTTTATTTAAGAAATGTAAAT
AATGATTTCGAACTTAATATCCTAGATAAAATATACCAATGTAAACAAAC
AAATGATCAATCAGTAACTCTATGTCAATTTTCATTAAGTCCTTATGTTG
ATCTTGTAAAAATCAATCAT
Gap no gap
Contig length 570
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 6195959
End point 6196530
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05989
List of clone(s) 

est1=VFB246F,1,571
Translated Amino Acid sequence 
IKITNNDNRLPIYLQKYIIKILCTHIDYYNSLVQTNNVFSDYRKDEQEIKKLMITVALVS
REWFKTLSDNLVISVDFNFKEKGKDQYSIIKSENVETLKLHFDHDDQRFYQIDSDFRPIE
IPIEIVNEKLMKLSMMEQTNFKYLYLRNVNNDFELNILDKIYQCKQTNDQSVTLCQFSLS
PYVDLVKINH
Translated Amino Acid sequence (All Frames) 
Frame A:
IKITNNDNRLPIYLQKYIIKILCTHIDYYNSLVQTNNVFSDYRKDEQEIKKLMITVALVS
REWFKTLSDNLVISVDFNFKEKGKDQYSIIKSENVETLKLHFDHDDQRFYQIDSDFRPIE
IPIEIVNEKLMKLSMMEQTNFKYLYLRNVNNDFELNILDKIYQCKQTNDQSVTLCQFSLS
PYVDLVKINH


Frame B:
lklqimitdyqfiyknillkyyvlilitiivwfkqimylviiekmnkk*rn**lplh*yq
engskhyqii*lyqltlilkkkvkiniql*kvkmlkl*nyisimmtndsiklivildplk
fqlkl*mkn**nfq*wnkqisstfi*em*imisnlis*ikytnvnkqminq*lyvnfh*v
lmlil*ksi


Frame C:
*nyk***pitnlftkiyy*nimysy*ll**fgsnk*ci**l*kr*trnkeindyrcisik
rmvqniir*fsyis*l*f*rkr*rsifnykk*kc*nfkitfrs**ptilsn***f*th*n
sn*nck*kinetfndgtnkfqvplfkkck**frt*ypr*nipm*tnk*sisnsmsifiks
lc*scknqs
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05989-1 (Contig-U05989-1Q)
/CSM_Contig/Contig-U05989-1Q.Seq.d
         (570 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05989-1 (Contig-U05989-1Q) /CSM_Contig/Conti...  1130  0.0
Contig-U10168-1 (Contig-U10168-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12795-1 (Contig-U12795-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U11305-1 (Contig-U11305-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U08797-1 (Contig-U08797-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U02523-1 (Contig-U02523-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U01501-1 (Contig-U01501-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U14899-1 (Contig-U14899-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U14162-1 (Contig-U14162-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U05989-1 (Contig-U05989-1Q) /CSM_Contig/Contig-U05989-1Q.Seq.d
          Length = 570

 Score = 1130 bits (570), Expect = 0.0
 Identities = 570/570 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaattacaaataatgataaccgattaccaatttatttacaaaaatatattattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attaaaattacaaataatgataaccgattaccaatttatttacaaaaatatattattaaa 60

                                                                       
Query: 61  atattatgtactcatattgattactataatagtttggttcaaacaaataatgtatttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atattatgtactcatattgattactataatagtttggttcaaacaaataatgtatttagt 120

                                                                       
Query: 121 gattatagaaaagatgaacaagaaataaagaaattaatgattaccgttgcattagtatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gattatagaaaagatgaacaagaaataaagaaattaatgattaccgttgcattagtatca 180

                                                                       
Query: 181 agagaatggttcaaaacattatcagataatttagttatatcagttgactttaattttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agagaatggttcaaaacattatcagataatttagttatatcagttgactttaattttaaa 240

                                                                       
Query: 241 gaaaaaggtaaagatcaatattcaattataaaaagtgaaaatgttgaaactttaaaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaaaaggtaaagatcaatattcaattataaaaagtgaaaatgttgaaactttaaaatta 300

                                                                       
Query: 301 catttcgatcatgatgaccaacgattctatcaaattgatagtgattttagacccattgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catttcgatcatgatgaccaacgattctatcaaattgatagtgattttagacccattgaa 360

                                                                       
Query: 361 attccaattgaaattgtaaatgaaaaattaatgaaactttcaatgatggaacaaacaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attccaattgaaattgtaaatgaaaaattaatgaaactttcaatgatggaacaaacaaat 420

                                                                       
Query: 421 ttcaagtacctttatttaagaaatgtaaataatgatttcgaacttaatatcctagataaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcaagtacctttatttaagaaatgtaaataatgatttcgaacttaatatcctagataaa 480

                                                                       
Query: 481 atataccaatgtaaacaaacaaatgatcaatcagtaactctatgtcaattttcattaagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atataccaatgtaaacaaacaaatgatcaatcagtaactctatgtcaattttcattaagt 540

                                         
Query: 541 ccttatgttgatcttgtaaaaatcaatcat 570
           ||||||||||||||||||||||||||||||
Sbjct: 541 ccttatgttgatcttgtaaaaatcaatcat 570


>Contig-U10168-1 (Contig-U10168-1Q) /CSM_Contig/Contig-U10168-1Q.Seq.d
          Length = 1278

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 360 aattccaattgaaattgtaaatga 383
           ||||| ||||||||||||||||||
Sbjct: 387 aattcaaattgaaattgtaaatga 410


>Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Contig-U12500-1Q.Seq.d
          Length = 1529

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1    attaaaattacaaataatgataa 23
            |||||||||||||||||| ||||
Sbjct: 1420 attaaaattacaaataataataa 1442


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,942
Number of Sequences: 6905
Number of extensions: 13942
Number of successful extensions: 1642
Number of sequences better than 10.0: 558
length of query: 570
length of database: 5,674,871
effective HSP length: 16
effective length of query: 554
effective length of database: 5,564,391
effective search space: 3082672614
effective search space used: 3082672614
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 6
Homology vs DNA 
Query= Contig-U05989-1 (Contig-U05989-1Q) /CSM_Contig/Contig-U05989-1Q.Seq.d
         (570 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ411197) Dictyostelium discoideum cDNA clone:ddv3k12, 5' e...   997   0.0    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    56   0.001  1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    54   0.006  1
(BH037560) RPCI-24-254G14.TJ RPCI-24 Mus musculus genomic cl...    36   0.011  3
(DQ060642) Clostridium difficile strain HPA R12865 S-layer p...    52   0.022  1
(DQ060641) Clostridium difficile strain HPA R13711 S-layer p...    52   0.022  1
(AC022578) Homo sapiens clone RP11-15C20, WORKING DRAFT SEQU...    48   0.033  3
(AC178766) Strongylocentrotus purpuratus clone R3-19G16, WOR...    38   0.033  6
(AC090803) Homo sapiens chromosome 8 clone RP11-783P19 map 8...    48   0.040  7
(AC026216) Homo sapiens chromosome 3 clone RP11-782N21 map 3...    48   0.078  3
(ER344351) 1092344370451 Global-Ocean-Sampling_GS-34-01-01-1...    50   0.087  1
(ED398322) AUAC-aah36b11.g1 Ascaris suum whole genome shotgu...    50   0.087  1
(AC179918) Strongylocentrotus purpuratus clone R3-1003C24, W...    44   0.15   6
(AP008934) Staphylococcus saprophyticus subsp. saprophyticus...    34   0.18   18
(AZ692315) ENTLQ43TF Entamoeba histolytica Sheared DNA Entam...    42   0.19   2
(BH163467) ENTRI33TF Entamoeba histolytica Sheared DNA Entam...    42   0.19   2
(AZ667931) ENTKB58TF Entamoeba histolytica Sheared DNA Entam...    42   0.19   2
(AZ679294) ENTKL08TR Entamoeba histolytica Sheared DNA Entam...    42   0.19   2
(AZ543615) ENTDD80TR Entamoeba histolytica Sheared DNA Entam...    42   0.20   2
(AZ547741) ENTGF46TR Entamoeba histolytica Sheared DNA Entam...    42   0.20   2
(CU639480) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.20   5
(AC179281) Strongylocentrotus purpuratus clone R3-45F13, WOR...    44   0.22   5
(ER608714) 1093016292457 Global-Ocean-Sampling_GS-36-01-01-2...    34   0.23   3
(EJ431335) 1093015256149 Global-Ocean-Sampling_GS-28-01-01-1...    34   0.26   2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.28   15
(AC138670) Mus musculus chromosome 15 clone RP24-406C11 map ...    44   0.32   5
(AC123882) Mus musculus chromosome 1, clone RP23-447L15, com...    48   0.34   1
(AF287957) Homo sapiens chromosome 8 clone CTD-2541M15 map p...    48   0.34   1
(AC097489) Homo sapiens BAC clone RP11-226A18 from 4, comple...    48   0.34   1
(AC100813) Homo sapiens chromosome 8 clone CTD-2541M15 map 8...    48   0.34   1
(CU639414) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    48   0.34   1
(AC091099) Homo sapiens chromosome 8 clone RP11-782N1 map 8,...    48   0.34   1
(AZ942694) 2M0202M22R Mouse 10kb plasmid UUGC2M library Mus ...    48   0.34   1
(ER983491) MUGQ_CH252P308A02T7_CP528_015 CHORI-252 Vervet Mo...    48   0.34   1
(BX072541) Mouse DNA sequence from clone RP23-189G9 on chrom...    36   0.47   4
(AC186079) Canis Familiaris chromosome 12, clone XX-93M5, co...    34   0.57   5
(AC140304) Mus musculus BAC clone RP23-386K4 from 15, comple...    44   0.61   5
(AZ673063) ENTHU22TR Entamoeba histolytica Sheared DNA Entam...    40   0.72   2
(AC165474) Bos taurus clone CH240-157G21, *** SEQUENCING IN ...    36   0.73   2
(AC219373) Bos taurus clone CH240-338J8, WORKING DRAFT SEQUE...    36   0.73   2
(EK219560) 1095460136212 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.75   2
(BH136575) ENTNX84TF Entamoeba histolytica Sheared DNA Entam...    40   0.75   2
(BH154013) ENTTG01TF Entamoeba histolytica Sheared DNA Entam...    40   0.77   2
(BH164167) ENTTE34TR Entamoeba histolytica Sheared DNA Entam...    40   0.78   2
(BB435069) Mus musculus adult pancreas Islet cells cDNA, RIK...    40   0.88   2
(AC180544) Strongylocentrotus purpuratus clone R3-3016J06, W...    44   0.90   4
(ER556101) 1093016324190 Global-Ocean-Sampling_GS-35-01-01-1...    36   0.96   2
(AC113803) Rattus norvegicus clone CH230-293F17, WORKING DRA...    42   1.1    3
(AL133241) Human chromosome 14 DNA sequence BAC C-2560C21 of...    36   1.1    3
(AC178165) Strongylocentrotus purpuratus clone R3-3081J19, W...    34   1.3    5
(U40238) Uncultured crenarchaeote 4B7 40 kb genomic fragment.      40   1.3    3
(AC040993) Homo sapiens chromosome 4 clone RP11-125C20 map 4...    40   1.3    4
(BX649335) Zebrafish DNA sequence from clone DKEY-24C2 in li...    46   1.4    1
(CS254483) Sequence 2 from Patent EP1619504.                       46   1.4    1
(AL031682) Human DNA sequence from clone RP5-873P14 on chrom...    46   1.4    1
(AC096937) Rattus norvegicus clone CH230-30N22, *** SEQUENCI...    46   1.4    1
(BX005198) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.4    1
(BH162374) ENTQR45TF Entamoeba histolytica Sheared DNA Entam...    46   1.4    1
(AZ530994) ENTBC46TF Entamoeba histolytica Sheared DNA Entam...    46   1.4    1
(CP000786) Leptospira biflexa serovar Patoc strain 'Patoc 1 ...    46   1.4    1
(CP000777) Leptospira biflexa serovar Patoc strain 'Patoc 1 ...    46   1.4    1
(CU463211) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.5    5
(CU468028) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   1.6    2
(AL669911) Mouse DNA sequence from clone RP23-65G8 on chromo...    36   1.7    3
(AX346851) Sequence 1922 from Patent WO0200928.                    30   1.7    6
(BJ344036) Dictyostelium discoideum cDNA clone:dda17p24, 3' ...    32   1.9    3
(AC181104) Strongylocentrotus purpuratus clone R3-3029M08, W...    42   1.9    4
(BX166672) Danio rerio genomic clone DKEY-148O23, genomic su...    42   1.9    2
(AC102879) Mus musculus clone RP24-465A12, WORKING DRAFT SEQ...    36   2.0    3
(ED729776) GM_WBb0086F15.r GM_WBb Glycine max genomic clone ...    32   2.0    3
(AC184372) Strongylocentrotus purpuratus clone R3-1011N23, W...    36   2.1    8
(CU263290) Equus caballus GSS, BAC clone CH241-413F23, SP6 e...    42   2.2    2
(BX114153) RZPD Homo sapiens cDNA clone IMAGp998M02112 = IMA...    36   2.3    2
(AE015927) Clostridium tetani E88, complete genome.                36   2.3    17
(CG107495) PUIAI75TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   2.5    2
(AC192203) Pan troglodytes chromosome 1 clone CH251-32G9, WO...    32   2.6    2
(AC192447) Pan troglodytes BAC clone CH251-14E9 from chromos...    32   2.6    2
(AL590669) Human DNA sequence from clone RP11-76K24 on chrom...    32   2.7    2
(AC068114) Homo sapiens chromosome 11 clone RP11-124D17 map ...    32   2.7    2
(ER645761) SB_BBc198-C16.F SB_BBc Sorghum bicolor genomic 5'...    38   2.7    2
(AC104618) Homo sapiens chromosome UNK clone RP11-117J21, **...    32   2.7    2
(AC196304) Myotis lucifugus clone CH235-133P22, WORKING DRAF...    36   2.8    6
(AC127730) Rattus norvegicus clone CH230-370P16, *** SEQUENC...    40   2.8    4
(AC181961) Strongylocentrotus purpuratus clone R3-1002H24, W...    36   2.9    3
(EJ481319) 1095403470783 Global-Ocean-Sampling_GS-28-01-01-1...    34   3.2    3
(AC117210) Mus musculus BAC clone RP23-286E20 from 10, compl...    36   3.3    5
(AC189914) Nomascus leucogenys leucogenys clone CH271-452G16...    38   3.3    3
(CU927997) S.lycopersicum DNA sequence *** SEQUENCING IN PRO...    32   3.3    8
(AC204780) Macaca mulatta  BAC CH250-85A8 () complete sequence.    34   3.3    4
(X14140) M.hyorhinis p37, p29, and p69 genes.                      34   3.5    4
(M37339) M.hyorhinis p37, p29, and p69 genes, complete cds.        34   3.5    4
(ED058299) AUAC-aag74h05.b1 Ascaris suum whole genome shotgu...    34   3.6    2
(AI651384) wb05f03.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I...    32   3.6    3
(AC155846) Mus musculus 6 BAC RP24-218D17 (Roswell Park Canc...    42   3.7    5
(AC083755) Homo sapiens chromosome 11, clone RP11-175E18, co...    44   3.8    3
(CU856683) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.9    8
(AC171501) Mus musculus BAC clone RP23-255N3 from chromosome...    36   4.0    6
(AC184230) Strongylocentrotus purpuratus clone R3-3056L22, W...    40   4.0    5
(AC176603) Strongylocentrotus purpuratus clone R3-3079E19, W...    32   4.2    7
(CU463162) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   4.2    3

>(BJ411197) Dictyostelium discoideum cDNA clone:ddv3k12, 5' end,
           single read.
          Length = 571

 Score =  997 bits (503), Expect = 0.0
 Identities = 503/503 (100%)
 Strand = Plus / Plus


Query: 68  gtactcatattgattactataatagtttggttcaaacaaataatgtatttagtgattata 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  gtactcatattgattactataatagtttggttcaaacaaataatgtatttagtgattata 127


Query: 128 gaaaagatgaacaagaaataaagaaattaatgattaccgttgcattagtatcaagagaat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gaaaagatgaacaagaaataaagaaattaatgattaccgttgcattagtatcaagagaat 187


Query: 188 ggttcaaaacattatcagataatttagttatatcagttgactttaattttaaagaaaaag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggttcaaaacattatcagataatttagttatatcagttgactttaattttaaagaaaaag 247


Query: 248 gtaaagatcaatattcaattataaaaagtgaaaatgttgaaactttaaaattacatttcg 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtaaagatcaatattcaattataaaaagtgaaaatgttgaaactttaaaattacatttcg 307


Query: 308 atcatgatgaccaacgattctatcaaattgatagtgattttagacccattgaaattccaa 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atcatgatgaccaacgattctatcaaattgatagtgattttagacccattgaaattccaa 367


Query: 368 ttgaaattgtaaatgaaaaattaatgaaactttcaatgatggaacaaacaaatttcaagt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttgaaattgtaaatgaaaaattaatgaaactttcaatgatggaacaaacaaatttcaagt 427


Query: 428 acctttatttaagaaatgtaaataatgatttcgaacttaatatcctagataaaatatacc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 acctttatttaagaaatgtaaataatgatttcgaacttaatatcctagataaaatatacc 487


Query: 488 aatgtaaacaaacaaatgatcaatcagtaactctatgtcaattttcattaagtccttatg 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aatgtaaacaaacaaatgatcaatcagtaactctatgtcaattttcattaagtccttatg 547


Query: 548 ttgatcttgtaaaaatcaatcat 570
           |||||||||||||||||||||||
Sbjct: 548 ttgatcttgtaaaaatcaatcat 570

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 743,778,535
Number of extensions: 52566317
Number of successful extensions: 4586773
Number of sequences better than 10.0: 204
Length of query: 570
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 547
Effective length of database: 93,106,754,628
Effective search space: 50929394781516
Effective search space used: 50929394781516
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U05989-1 (Contig-U05989-1Q) /CSM_Contig/Contig-U05989-1Q.Seq.d
         (570 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_28(AC117075|pid:none) Dictyostelium discoideum chromoso...   129   4e-29
AC117075_27(AC117075|pid:none) Dictyostelium discoideum chromoso...   125   6e-28
AC116984_94(AC116984|pid:none) Dictyostelium discoideum chromoso...   120   3e-26
AC115584_8(AC115584|pid:none) Dictyostelium discoideum chromosom...   119   4e-26
AC116305_13(AC116305|pid:none) Dictyostelium discoideum chromoso...   107   3e-22
AC116984_95(AC116984|pid:none) Dictyostelium discoideum chromoso...    94   2e-18
CP000932_412(CP000932|pid:none) Campylobacter lari RM2100, compl...    42   0.015
AL844506_134(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.044
(Q6BU68) RecName: Full=DNA mismatch repair protein HSM3;  &CR382...    38   0.17
AL844508_46(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    36   0.64
BX538353_105(BX538353|pid:none) Cryptosporidium parvum chromosom...    36   0.83
CP000771_697(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1...    36   0.83
(A8MEA3) RecName: Full=DNA replication and repair protein recF; ...    35   1.1
(P06529) RecName: Full=Type-2 restriction enzyme BsuRI;         ...    35   1.1
AP008971_1404(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA...    35   1.4
CR940353_17(CR940353|pid:none) Theileria annulata strain Ankara ...    35   1.9
U97196_1(U97196|pid:none) Caenorhabditis elegans cosmid B0207, c...    34   2.4
CP000745_1315(CP000745|pid:none) Methanococcus maripaludis C7, c...    34   2.4
CP000013_818(CP000013|pid:none) Borrelia garinii PBi, complete g...    34   3.2
AC116956_64(AC116956|pid:none) Dictyostelium discoideum chromoso...    34   3.2
AF250284_52(AF250284|pid:none) Amsacta moorei entomopoxvirus, co...    34   3.2
CP000745_5(CP000745|pid:none) Methanococcus maripaludis C7, comp...    33   4.1
CP000246_314(CP000246|pid:none) Clostridium perfringens ATCC 131...    33   4.1
CP000437_138(CP000437|pid:none) Francisella tularensis subsp. ho...    33   4.1
CP000851_3501(CP000851|pid:none) Shewanella pealeana ATCC 700345...    33   4.1
AM115896_1(AM115896|pid:none) Plasmodium falciparum partial var ...    33   5.4
CR382134_238(CR382134|pid:none) Debaryomyces hansenii strain CBS...    33   5.4
AY967072_1(AY967072|pid:none) Synthetic construct isolate FTT023...    33   5.4
(Q99394) RecName: Full=Transport protein particle 33 kDa subunit...    33   5.4
BA000016_344(BA000016|pid:none) Clostridium perfringens str. 13 ...    33   5.4
AE014186_94(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    33   5.4
AE014186_455(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.4
CP001196_2783(CP001196|pid:none) Oligotropha carboxidovorans OM5...    33   5.4
AC117081_49(AC117081|pid:none) Dictyostelium discoideum chromoso...    33   5.4
AJ010592_27(AJ010592|pid:none) Guillardia theta DNA for complete...    33   5.4
CU469464_327(CU469464|pid:none) Candidatus Phytoplasma mali stra...    33   5.4
AP009049_1790(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    33   7.0
H88533(H88533)probable ATP-dependent RNA helicase C06E1.10 - Cae...    33   7.0
(P34305) RecName: Full=Putative ATP-dependent RNA helicase rha-2...    33   7.0
CP000813_215(CP000813|pid:none) Bacillus pumilus SAFR-032, compl...    33   7.0
AE017308_515(AE017308|pid:none) Mycoplasma mobile 163K complete ...    33   7.0
CP000673_1992(CP000673|pid:none) Clostridium kluyveri DSM 555, c...    33   7.0
CP001056_2124(CP001056|pid:none) Clostridium botulinum B str. Ek...    32   9.2
DQ985738_15(DQ985738|pid:none) Helicobacter pylori strain 3K cag...    32   9.2
CP001083_2731(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    32   9.2
CP001177_892(CP001177|pid:none) Bacillus cereus AH187, complete ...    32   9.2
AP009049_805(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ...    32   9.2
CP001393_2626(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    32   9.2
CP001310_9(CP001310|pid:none) Borrelia garinii PBr plasmid PBr_l...    32   9.2
CP000890_859(CP000890|pid:none) Coxiella burnetii RSA 331, compl...    32   9.2
AY330644_10(AY330644|pid:none) Helicobacter pylori strain Du23:2...    32   9.2
FM992690_487(FM992690|pid:none) Candida dubliniensis CD36 chromo...    32   9.2
AL844508_213(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.2
AM910991_412(AM910991|pid:none) Plasmodium knowlesi strain H chr...    32   9.2
(O67433) RecName: Full=Uncharacterized protein aq_1446;  &AE0006...    32   9.2
AE014187_536(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.2
CP001217_539(CP001217|pid:none) Helicobacter pylori P12, complet...    32   9.2

>AC117075_28(AC117075|pid:none) Dictyostelium discoideum chromosome
           2 map 5201047-5455781 strain AX4, complete sequence.
          Length = 493

 Score =  129 bits (325), Expect = 4e-29
 Identities = 89/240 (37%), Positives = 126/240 (52%), Gaps = 60/240 (25%)
 Frame = +1

Query: 28  LPIYLQKYIIKILCTHIDYYNSLVQTNNVFSDYRKDEQEIKKLMITVALVSREWFKTLSD 207
           LP+Y+QKYIIKILC +ID  N  +  + V  DYR +E +IK+LM+T+ALVS++WFKTLS+
Sbjct: 5   LPLYIQKYIIKILCRYIDKNNKSI--DYVGGDYRGNESQIKRLMLTLALVSQDWFKTLSN 62

Query: 208 NLVISVDFNFKEKGKD---------------QYSIIKSENVETLKLHFDHDDQRFYQID- 339
           NL +SVDFN+     +               +YSIIK EN++TLKLHFDH    FY  D
Sbjct: 63  NLTVSVDFNYTNLNHNKNNNNNNNNKNDIDLKYSIIKKENLKTLKLHFDHQGSFFYIKDI 122

Query: 340 ---------------------SDFRPIEIPIEIVNEKLMKLSMMEQT------------- 417
                                SD + IE  ++IVN++L KLS ++ T
Sbjct: 123 SIYEKDKKQSPKDNDIFDDDKSDEKIIE--LDIVNKELEKLSKLKTTIPSTLSLLENQKQ 180

Query: 418 -------NFKYLYLRNV---NNDFELNILDKIYQCKQTNDQSVTLCQFSLSPYVDLVKIN 567
                   FK L LRN+   N   + +IL  +Y+C+ T D ++ L +  L+P      +N
Sbjct: 181 QQQQQTIIFKNLILRNISSSNETEDTDILQSLYRCEAT-DGNIHLLELDLNPIFTFKSLN 239

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 745,818,043
Number of extensions: 13851099
Number of successful extensions: 38132
Number of sequences better than 10.0: 58
Number of HSP's gapped: 38087
Number of HSP's successfully gapped: 61
Length of query: 190
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 69
Effective length of database: 653,248,294
Effective search space: 45074132286
Effective search space used: 45074132286
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.69  gvh: 0.27  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for Contig-U05989-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0