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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01257-1
Contig ID Contig-U01257-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01257-1 (Contig-U01257-1Q) /CSM_Contig/Contig-U01257-1Q.Seq.d
CGCACACACACACACACACACACACACAAAGACCCTCCCAAACTCGTTTT
CTTTTTTTTTTTTTTAAAAATAAAAATAAAAAATAAAAATGAACGATTCA
AATAACCAAAATAATGAAGTAAATGAAACTTCAACAACATCCACTACAAC
TACAACTACCACCACAACAACATCAAACGATAATAATAATAATAATAATA
ATAATAATATTTACAGTAATAGTATACATGATTTTACATTATTTGAATCA
TTCACATGGGGTCAAAAAATATATATTGAACTTGATGAATCACCAATGTC
AACAAGTGATCCAGAATATCAAAAACAAGTTAAATCATCAATTACACACT
TTTTTACAGCATCAATGAATGTATCAAAACAACAAATTTTCTCAAAAAAT
GAAGAATTGGAAGATATTAGAACTGATTCTTTAACATATTTNTCAATTCC
ATATTATTTATCTGACCTTTATTTA----------TAATGGATAAAGAGG
ATTTAGAAATTGTTCATAGGGAAGGTAAATCAGATCCAGTTAATAGAAGA
AATGAATTGATAAGTAGAAATAAGAGAAATAGAGAGATTAAAGATAAGTT
GGCATATACAGTTAAAAAGAGAATTGAAATATTGAAAGCAGCAGGTAAAG
ATTCATCAGAGATTGAAGAGAGTGATACAGGTGACGAGGAATTGGATAGA
CAATTCTCAATGTTATTAATTAATGAAGCGATATTTAAAGCAATTGGGTT
ATTGGAAACTATTGAAATCGAACTTCCAATGCTTCAACAAATTGAAGTTA
TTAAAGAACAAAACGGTGGTGTTGTGCCACCACCAAAGGTATCCACCAAA
GGTAGTGGTATAGGTAATTTTCAAATCTTGCCAGATGGCAGAAGAATTGC
ATTGGATCGTGTTTTTAGACCAAGTCATATCTTACCAACTATGACTCCTC
AAGAAGGTGCCGAATGGGATATGCACCATGGTGGTATGGTAAAGGGCAAA
GGTGGTAAAGAAAGCGAAGCAAAAGAAAAAACTGACGAAGATTTAGATGC
TGAAGATGATGATGATGAAAAATTAAGAGAAAAAAGAAATTGGGATAATT
ATAAAGAAGATAATCCTAAAGGTTGGGGTAATTCATTAAGAAGATAAAAT
AAAAAATAAAAAAATAAAAAAAATAAAAAATAAAAAANTAATAATTATAA
ATAATAAAAAAAAA
Gap gap included
Contig length 1204
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2329628
End point 2330833
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 5
Link to clone list U01257
List of clone(s) 

est1=SSB485F,1,374
est2=SLE343F,5,476
est3=SLE343Z,477,1148
est4=VSH218F,1000,1206
est5=VSH218Z,1000,1179
Translated Amino Acid sequence 
ahthththtktlpnsfsffff*k*k*KIKMNDSNNQNNEVNETSTTSTTTTTTTTTTSND
NNNNNNNNNIYSNSIHDFTLFESFTWGQKIYIELDESPMSTSDPEYQKQVKSSITHFFTA
SMNVSKQQIFSKNEELEDIRTDSLTYXSIPYYLSDLYL---

---MDKEDLEIVHREGKSDPVNRRNELISRNKRNREIKDKLAYTVKKRIEILKAAGKDSS
EIEESDTGDEELDRQFSMLLINEAIFKAIGLLETIEIELPMLQQIEVIKEQNGGVVPPPK
VSTKGSGIGNFQILPDGRRIALDRVFRPSHILPTMTPQEGAEWDMHHGGMVKGKGGKESE
AKEKTDEDLDAEDDDDEKLREKRNWDNYKEDNPKGWGNSLRR*nkk*knkknkk*kxnny
k**kk
Translated Amino Acid sequence (All Frames) 
Frame A:
rththththkdppklvffffflkikiknknerfk*pk**sk*nfnnihynynyhhnnikr
*********ylq**yt*fyii*iihmgskniy*t**itnvnk*sriskts*iinytlfys
inecikttnflkk*rigry*n*ffnifxnsilfi*plf---

---*wikri*klfigkvnqiqlieemn**veireierlkiswhiqlkrelky*kqqvkih
qrlkrviqvtrnwidnsqcy*lmkrylkqlgywkllksnfqcfnklkllknktvvlchhq
ryppkvvv*vifkscqmaeelhwivfldqvisyql*llkkvpngictmvvw*rakvvkka
kqkkkltki*mlkmmmmkn*ekkeigiiikkiilkvgvih*edkiknkkikkiknkkxii
innkkk

Frame B:
ahthththtktlpnsfsffff*k*k*KIKMNDSNNQNNEVNETSTTSTTTTTTTTTTSND
NNNNNNNNNIYSNSIHDFTLFESFTWGQKIYIELDESPMSTSDPEYQKQVKSSITHFFTA
SMNVSKQQIFSKNEELEDIRTDSLTYXSIPYYLSDLYL---

---ng*rgfrncs*gr*irss**kk*idk*k*ek*rd*r*vgiys*ken*niessr*rfi
rd*re*yr*rgig*tilnvin**sdi*snwvigny*nrtsnastn*sy*rtkrwccattk
gihqr*wyr*fsnlarwqkncigscf*tksyltnydssrrcrmgyapwwygkgqrw*rkr
skrkn*rrfrc*r****kikrkkklg*l*rr*s*rlg*fikkik*kikk*kk*kikx**l
*iikk

Frame C:
hthththtqrpsqtrflffffknknkk*k*tiqitkimk*mklqqhplqlqlppqqhqti
iiiiiiiiiftvivymilhylnhshgvkkyilnlmnhqcqqviqniknklnhqlhtflqh
q*myqnnkfsqkmknwkilelil*hixqfhiiyltfi---

---MDKEDLEIVHREGKSDPVNRRNELISRNKRNREIKDKLAYTVKKRIEILKAAGKDSS
EIEESDTGDEELDRQFSMLLINEAIFKAIGLLETIEIELPMLQQIEVIKEQNGGVVPPPK
VSTKGSGIGNFQILPDGRRIALDRVFRPSHILPTMTPQEGAEWDMHHGGMVKGKGGKESE
AKEKTDEDLDAEDDDDEKLREKRNWDNYKEDNPKGWGNSLRR*nkk*knkknkk*kxnny
k**kk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01257-1 (Contig-U01257-1Q)
/CSM_Contig/Contig-U01257-1Q.Seq.d
         (1214 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01257-1 (Contig-U01257-1Q) /CSM_Contig/Conti...  1788  0.0
Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti...    50  8e-06
Contig-U11251-1 (Contig-U11251-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U13325-1 (Contig-U13325-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U11793-1 (Contig-U11793-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U11443-1 (Contig-U11443-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U10901-1 (Contig-U10901-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U08276-1 (Contig-U08276-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U03497-1 (Contig-U03497-1Q) /CSM_Contig/Conti...    44  5e-04

>Contig-U01257-1 (Contig-U01257-1Q) /CSM_Contig/Contig-U01257-1Q.Seq.d
          Length = 1214

 Score = 1788 bits (902), Expect = 0.0
 Identities = 935/935 (100%)
 Strand = Plus / Plus

                                                                        
Query: 210  tttacagtaatagtatacatgattttacattatttgaatcattcacatggggtcaaaaaa 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210  tttacagtaatagtatacatgattttacattatttgaatcattcacatggggtcaaaaaa 269

                                                                        
Query: 270  tatatattgaacttgatgaatcaccaatgtcaacaagtgatccagaatatcaaaaacaag 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270  tatatattgaacttgatgaatcaccaatgtcaacaagtgatccagaatatcaaaaacaag 329

                                                                        
Query: 330  ttaaatcatcaattacacacttttttacagcatcaatgaatgtatcaaaacaacaaattt 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330  ttaaatcatcaattacacacttttttacagcatcaatgaatgtatcaaaacaacaaattt 389

                                                                        
Query: 390  tctcaaaaaatgaagaattggaagatattagaactgattctttaacatatttntcaattc 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390  tctcaaaaaatgaagaattggaagatattagaactgattctttaacatatttntcaattc 449

                                                                        
Query: 450  catattatttatctgacctttatttannnnnnnnnntaatggataaagaggatttagaaa 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450  catattatttatctgacctttatttannnnnnnnnntaatggataaagaggatttagaaa 509

                                                                        
Query: 510  ttgttcatagggaaggtaaatcagatccagttaatagaagaaatgaattgataagtagaa 569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510  ttgttcatagggaaggtaaatcagatccagttaatagaagaaatgaattgataagtagaa 569

                                                                        
Query: 570  ataagagaaatagagagattaaagataagttggcatatacagttaaaaagagaattgaaa 629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570  ataagagaaatagagagattaaagataagttggcatatacagttaaaaagagaattgaaa 629

                                                                        
Query: 630  tattgaaagcagcaggtaaagattcatcagagattgaagagagtgatacaggtgacgagg 689
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630  tattgaaagcagcaggtaaagattcatcagagattgaagagagtgatacaggtgacgagg 689

                                                                        
Query: 690  aattggatagacaattctcaatgttattaattaatgaagcgatatttaaagcaattgggt 749
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690  aattggatagacaattctcaatgttattaattaatgaagcgatatttaaagcaattgggt 749

                                                                        
Query: 750  tattggaaactattgaaatcgaacttccaatgcttcaacaaattgaagttattaaagaac 809
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750  tattggaaactattgaaatcgaacttccaatgcttcaacaaattgaagttattaaagaac 809

                                                                        
Query: 810  aaaacggtggtgttgtgccaccaccaaaggtatccaccaaaggtagtggtataggtaatt 869
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810  aaaacggtggtgttgtgccaccaccaaaggtatccaccaaaggtagtggtataggtaatt 869

                                                                        
Query: 870  ttcaaatcttgccagatggcagaagaattgcattggatcgtgtttttagaccaagtcata 929
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870  ttcaaatcttgccagatggcagaagaattgcattggatcgtgtttttagaccaagtcata 929

                                                                        
Query: 930  tcttaccaactatgactcctcaagaaggtgccgaatgggatatgcaccatggtggtatgg 989
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930  tcttaccaactatgactcctcaagaaggtgccgaatgggatatgcaccatggtggtatgg 989

                                                                        
Query: 990  taaagggcaaaggtggtaaagaaagcgaagcaaaagaaaaaactgacgaagatttagatg 1049
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  taaagggcaaaggtggtaaagaaagcgaagcaaaagaaaaaactgacgaagatttagatg 1049

                                                                        
Query: 1050 ctgaagatgatgatgatgaaaaattaagagaaaaaagaaattgggataattataaagaag 1109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 ctgaagatgatgatgatgaaaaattaagagaaaaaagaaattgggataattataaagaag 1109

                                               
Query: 1110 ataatcctaaaggttggggtaattcattaagaaga 1144
            |||||||||||||||||||||||||||||||||||
Sbjct: 1110 ataatcctaaaggttggggtaattcattaagaaga 1144


 Score =  178 bits (90), Expect = 1e-44
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 90  tgaacgattcaaataaccaaaataatgaagtaaatgaaacttcaacaacatccactacaa 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  tgaacgattcaaataaccaaaataatgaagtaaatgaaacttcaacaacatccactacaa 149

                                         
Query: 150 ctacaactaccaccacaacaacatcaaacg 179
           ||||||||||||||||||||||||||||||
Sbjct: 150 ctacaactaccaccacaacaacatcaaacg 179


 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 29 aagaccctcccaaactcgttttc 51
          |||||||||||||||||||||||
Sbjct: 29 aagaccctcccaaactcgttttc 51


>Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Contig-U10968-1Q.Seq.d
          Length = 2025

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 143  actacaactacaactaccaccacaacaac 171
            |||||||| ||||||||||||||||||||
Sbjct: 1580 actacaacaacaactaccaccacaacaac 1608


>Contig-U11251-1 (Contig-U11251-1Q) /CSM_Contig/Contig-U11251-1Q.Seq.d
          Length = 2643

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 146  acaactacaactaccaccacaacaacatcaaa 177
            |||||||||||||||||||| |||||| ||||
Sbjct: 1051 acaactacaactaccaccactacaacaacaaa 1082


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,909
Number of Sequences: 8361
Number of extensions: 26909
Number of successful extensions: 5262
Number of sequences better than 10.0: 786
length of query: 1214
length of database: 7,895,291
effective HSP length: 16
effective length of query: 1198
effective length of database: 7,761,515
effective search space: 9298294970
effective search space used: 9298294970
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.25
Homology vs DNA 
Query= Contig-U01257-1 (Contig-U01257-1Q) /CSM_Contig/Contig-U01257-1Q.Seq.d
         (1214 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034799) Dictyostelium discoideum slug cDNA, clone SLE343.     1037   0.0    2
(AU061461) Dictyostelium discoideum slug cDNA, clone SLE343.      521   e-172  3
(AU071431) Dictyostelium discoideum slug cDNA, clone SSB485.      101   2e-34  3
(AU267086) Dictyostelium discoideum vegetative cDNA clone:VS...   111   6e-20  1
(AU267087) Dictyostelium discoideum vegetative cDNA clone:VS...    94   2e-14  1
(U39648) Caenorhabditis elegans cosmid T13C5, complete seque...    58   8e-04  1
(FM864973) Caenorhabditis elegans EST, clone  H10_cex.trans....    58   8e-04  1
(EX475256) EST_lsal_evj_792375 lsalevj mixed_tissue_mixed_st...    58   8e-04  1
(EX475255) EST_lsal_evj_788151 lsalevj mixed_tissue_mixed_st...    58   8e-04  1
(FE776267) CCAG8666.b5 CCAG Petrolisthes cinctipes heart, gi...    40   0.011  2
(DW022068) PMAD-aap76n01.g1 Lamprey_WGS_pCMV-sport6 Petromyz...    36   0.041  2
(EC819105) SME00008073 esmbsro2 Sawyeria marylandensis cDNA,...    52   0.051  1
(Z84574) Caenorhabditis elegans Cosmid F33E2.                      36   0.13   2
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255...    40   0.13   2
(EY303416) CAWX16699.rev CAWX Helobdella robusta Primary Ear...    34   0.16   2
(BX927071) Zebrafish DNA sequence from clone DKEY-286O23 in ...    50   0.20   1
(AL772326) Mouse DNA sequence from clone RP23-267E14 on chro...    50   0.20   1
(EU527977) Theromyzon tessulatum glutamine-rich teleoblast p...    50   0.20   1
(AC112033) Rattus norvegicus clone CH230-94G2, *** SEQUENCIN...    50   0.20   1
(AC095568) Rattus norvegicus clone CH230-7O18, *** SEQUENCIN...    50   0.20   1
(AC094779) Rattus norvegicus clone CH230-4O1, *** SEQUENCING...    50   0.20   1
(ER365331) 1093018986750 Global-Ocean-Sampling_GS-34-01-01-1...    50   0.20   1
(DE952261) Macropus eugenii DNA, BAC clone: MEB1-150L06_R, 3...    50   0.20   1
(AG323055) Mus musculus molossinus DNA, clone:MSMg01-110A09....    50   0.20   1
(EB081523) PMAH-aaa66e01.g1 Lamprey_EST_Olfactory Petromyzon...    50   0.20   1
(DV397985) NADDN22TR Aedes aegypti infected with Dengue viru...    50   0.20   1
(DV388862) NADBZ43TR Aedes aegypti infected with Dengue viru...    50   0.20   1
(DV311311) NABP385TRB Aedes aegypti infected with Brugia Mal...    50   0.20   1
(BJ441996) Dictyostelium discoideum cDNA clone:ddv48c14, 3' ...    50   0.20   1
(BJ441690) Dictyostelium discoideum cDNA clone:ddv47c17, 3' ...    50   0.20   1
(BJ439030) Dictyostelium discoideum cDNA clone:ddv39a07, 3' ...    50   0.20   1
(BJ437570) Dictyostelium discoideum cDNA clone:ddv34m16, 3' ...    50   0.20   1
(BJ437502) Dictyostelium discoideum cDNA clone:ddv34p11, 3' ...    50   0.20   1
(BJ408668) Dictyostelium discoideum cDNA clone:dds46g14, 3' ...    50   0.20   1
(BJ406409) Dictyostelium discoideum cDNA clone:dds35m01, 3' ...    50   0.20   1
(BJ406217) Dictyostelium discoideum cDNA clone:dds34e15, 3' ...    50   0.20   1
(BJ405512) Dictyostelium discoideum cDNA clone:dds31n23, 3' ...    50   0.20   1
(BJ378446) Dictyostelium discoideum cDNA clone:ddc31b01, 3' ...    50   0.20   1
(BJ357537) Dictyostelium discoideum cDNA clone:dda63i24, 3' ...    50   0.20   1
(BJ355571) Dictyostelium discoideum cDNA clone:dda57d16, 3' ...    50   0.20   1
(BJ354550) Dictyostelium discoideum cDNA clone:dda54a04, 3' ...    50   0.20   1
(BJ353102) Dictyostelium discoideum cDNA clone:dda49b04, 3' ...    50   0.20   1
(BJ351254) Dictyostelium discoideum cDNA clone:dda42g16, 3' ...    50   0.20   1
(BJ350403) Dictyostelium discoideum cDNA clone:dda39b23, 3' ...    50   0.20   1
(BJ344612) Dictyostelium discoideum cDNA clone:dda19m20, 3' ...    50   0.20   1
(EY342933) CAWZ12199.fwd CAWZ Helobdella robusta Primary Lat...    50   0.20   1
(GC700287) Sequence 15532 from patent US 6812339.                  40   0.41   3
(AL354917) Human DNA sequence from clone RP11-61P7 on chromo...    40   0.43   3
(BX927325) Zebrafish DNA sequence from clone DKEYP-47G1 in l...    34   0.44   2
(AR279260) Sequence 3 from patent US 6514697.                      38   0.53   2
(AR097041) Sequence 3 from patent US 6071518.                      38   0.53   2
(AR279261) Sequence 4 from patent US 6514697.                      38   0.53   2
(AR097042) Sequence 4 from patent US 6071518.                      38   0.53   2
(DQ077379) Mesocyclops edax clone s3m10 somatic genomic sequ...    38   0.55   2
(BX163360) Danio rerio genomic clone DKEY-166H20, genomic su...    34   0.58   2
(CK815843) Rasgsc7736 Salivary Gland 4th instar 3rd period (...    38   0.58   2
(FF513770) G709P569RD5.T0 Acorn worm normalized neurula pExp...    44   0.72   2
(BT033030) Arabidopsis thaliana unknown protein (At2g38470) ...    48   0.80   1
(AK226301) Arabidopsis thaliana mRNA for putative WRKY-type ...    48   0.80   1
(AF509499) Arabidopsis thaliana WRKY transcription factor 33...    48   0.80   1
(AC004683) Arabidopsis thaliana chromosome 2 clone T19C21 ma...    48   0.80   1
(FB510952) Sequence 11 from Patent WO2008097344.                   48   0.80   1
(EA483194) Sequence 617 from patent US 7345217.                    48   0.80   1
(CS486650) Sequence 17 from Patent WO2007003409.                   48   0.80   1
(AX651760) Sequence 606 from Patent WO03000898.                    48   0.80   1
(AX506109) Sequence 804 from Patent WO0216655.                     48   0.80   1
(AX463546) Sequence 2 from Patent WO0250293.                       48   0.80   1
(AX412905) Sequence 669 from Patent WO0222675.                     48   0.80   1
(AX412575) Sequence 339 from Patent WO0222675.                     48   0.80   1
(U64858) Caenorhabditis elegans cosmid C16D9, complete seque...    48   0.80   1
(AY160103) Dictyostelium discoideum nucleotide exchange fact...    48   0.80   1
(AY144625) Helobdella robusta hairy and enhancer of split (h...    48   0.80   1
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    48   0.80   1
(AC117073) Dictyostelium discoideum chromosome 2 map 6045872...    48   0.80   1
(AC007364) Homo sapiens BAC clone RP11-329H24 from 2, comple...    48   0.80   1
(AC152797) Bos taurus clone CH240-15D10, WORKING DRAFT SEQUE...    48   0.80   1
(AC103224) Rattus norvegicus clone CH230-51K15, WORKING DRAF...    48   0.80   1
(CU927977) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.80   1
(CU686774) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.80   1
(AC217153) Bos taurus clone CH240-15D10, WORKING DRAFT SEQUE...    48   0.80   1
(AC180845) Strongylocentrotus purpuratus clone R3-3070K23, W...    48   0.80   1
(BX820392) Arabidopsis thaliana Full-length cDNA Complete se...    48   0.80   1
(ER427354) 1092963759203 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.80   1
(ER343255) 1092344361088 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.80   1
(EK534703) 1095516022859 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.80   1
(EK534659) 1095516022798 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.80   1
(EK511865) 1095515482230 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.80   1
(EK379416) 1095469454505 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.80   1
(EG480700) AYBLT89TF pooled cDNA populations Arabidopsis tha...    48   0.80   1
(EB995197) 7626887 CE04 Caenorhabditis elegans cDNA clone 27...    48   0.80   1
(DR750854) 35-L022529-065-010-C05-SeLA MPIZ-ADIS-065d Arabid...    48   0.80   1
(CB257330) 33-E012741-027-007-A09-T7R MPIZ-ADIS-027 Arabidop...    48   0.80   1
(CB254765) 60-E015333-019-005-H16-T7R MPIZ-ADIS-019 Arabidop...    48   0.80   1
(BU636805) 011H06 Infected Arabidopsis Leaf Arabidopsis thal...    48   0.80   1
(BJ332079) Dictyostelium discoideum cDNA clone:dda37j06, 5' ...    48   0.80   1
(BJ139041) Caenorhabditis elegans cDNA clone:yk1142c04 : 3' ...    48   0.80   1
(FD714857) CAAA1856.fwd CAAA Petromyzon marinus Petromyzon m...    48   0.80   1
(FD704578) CAAA12627.fwd CAAA Petromyzon marinus Petromyzon ...    48   0.80   1
(EX970170) CAGO4982.rev CAGO Karenia brevis Karbr Stressed (...    48   0.80   1
(EX874478) AUAO6235.rev AUAO Karenia brevis Karbr Dark-phase...    48   0.80   1
(EX868488) AUAO2996.rev AUAO Karenia brevis Karbr Dark-phase...    48   0.80   1
(EX551199) AIAC-aaa32h07.b1 Ancylostoma_caninum_EST_Male_pSM...    48   0.80   1
(EW743318) AIAC-aaa11e06.b1 Ancylostoma_caninum_EST_Male_pSM...    48   0.80   1
(AV822785) Arabidopsis thaliana cDNA clone:RAFL05-11-J06, 5'...    48   0.80   1
(CU467853) Zebrafish DNA sequence from clone CH73-161I8 in l...    40   0.87   3
(EH087112) PMEBC31TO Perkinsus marinus large insert cDNA lib...    44   0.88   2
(AC123403) Rattus norvegicus clone CH230-291G17, WORKING DRA...    36   1.6    2
(AC097558) Rattus norvegicus clone CH230-152E22, *** SEQUENC...    36   1.6    2
(CU462831) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   1.6    2
(BP162611) Sus scrofa mRNA, clone:THY010068C08, 5' end, expr...    32   2.1    2
(DH493921) Monosiga ovata DNA, fosmid clone: MOF-056K05, gen...    36   2.1    2
(DH503575) Monosiga ovata DNA, fosmid clone: MOF-073H12, gen...    36   2.1    2
(DH654103) Rattus norvegicus DNA, BAC clone: RNB1-198C14, 5'...    36   2.1    2
(DH490585) Monosiga ovata DNA, fosmid clone: MOF-050K22, gen...    36   2.2    2
(CK812677) Rasgsc1615 Salivary Gland 4th instar 3rd period (...    34   2.2    2
(DH478967) Monosiga ovata DNA, fosmid clone: MOF-030L16, gen...    36   2.2    2
(BJ420739) Dictyostelium discoideum cDNA clone:ddv40d08, 5' ...    34   2.2    2
(CV022501) Rasgscb0081 Salivary Gland 4th instar 3rd period ...    34   2.2    2
(DC618774) Lethenteron japonicum cDNA, clone: Lamprey_liver_...    32   2.3    2
(Z49207) Caenorhabditis elegans Cosmid R07E3.                      42   3.1    3
(CR392032) Zebrafish DNA sequence from clone DKEYP-64A3 in l...    46   3.2    1
(AC158917) Mus musculus chromosome 5, clone RP24-238D24, com...    46   3.2    1
(AC155163) Mus musculus BAC clone RP24-341A18 from chromosom...    46   3.2    1
(AC145556) Mus musculus BAC clone RP23-308E7 from chromosome...    46   3.2    1
(AP006852) Candida albicans genomic DNA, chromosome 7, compl...    46   3.2    1
(EA333186) Sequence 5678 from patent US 7306913.                   46   3.2    1
(AR547545) Sequence 2676 from patent US 6747137.                   46   3.2    1
(AR544922) Sequence 53 from patent US 6747137.                     46   3.2    1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    46   3.2    1
(AC073569) Homo sapiens 12 BAC RP11-530C5 (Roswell Park Canc...    46   3.2    1
(AC073716) Mus musculus clone RP23-202O1, WORKING DRAFT SEQU...    46   3.2    1
(CU457775) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.2    1
(CR855272) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.2    1
(AC217342) Pan troglodytes clone ptb-241e23, WORKING DRAFT S...    46   3.2    1
(AC007949) Homo sapiens clone RP11-44H8, WORKING DRAFT SEQUE...    46   3.2    1
(ER457619) 1092963875050 Global-Ocean-Sampling_GS-35-01-01-1...    46   3.2    1
(ER434166) 1092963790216 Global-Ocean-Sampling_GS-35-01-01-1...    46   3.2    1
(DU036942) 19640 Tomato HindIII BAC Library Solanum lycopers...    46   3.2    1
(DH493456) Monosiga ovata DNA, fosmid clone: MOF-055N08, gen...    46   3.2    1
(DH485162) Monosiga ovata DNA, fosmid clone: MOF-041G19, gen...    46   3.2    1
(DH471539) Monosiga ovata DNA, fosmid clone: MOF-017K17, gen...    46   3.2    1
(AG523805) Mus musculus molossinus DNA, clone:MSMg01-431J06....    46   3.2    1
(EH708150) CCIS7465.b1_B19.ab1 CCI(LMS) chicory Cichorium in...    46   3.2    1
(EG757866) EST_ssal_sjb_6485 ssalsjb mixed_tissue Salmo sala...    46   3.2    1
(EB636109) AGENCOURT_54980961 D. mojavensis EST Drosophila m...    46   3.2    1
(EB627017) AGENCOURT_54975644 D. mojavensis EST Drosophila m...    46   3.2    1
(EB618838) AGENCOURT_54967944 D. mojavensis EST Drosophila m...    46   3.2    1
(DT716194) cl130ct138cn147 Zhikong scallop Chlamys farreri c...    46   3.2    1
(DN201594) USDA-FP_136685 Asian citrus psyllid Diaphorina ci...    46   3.2    1
(DC618491) Lethenteron japonicum cDNA, clone: Lamprey_liver_...    46   3.2    1
(DC616775) Lethenteron japonicum cDNA, clone: Lamprey_liver_...    46   3.2    1
(CK811446) Rasgsc7153 Salivary Gland 4th instar 3rd period (...    46   3.2    1
(CK811381) Rasgsc7031 Salivary Gland 4th instar 3rd period (...    46   3.2    1
(CB311234) AGENCOURT_11876826 NICHD_Rh_Ov1 Macaca mulatta cD...    46   3.2    1
(BJ362683) Dictyostelium discoideum cDNA clone:ddc23d04, 5' ...    46   3.2    1
(GD268599) USDA-FP_200353 Asian citrus psyllid testes (Hemip...    46   3.2    1
(FK871283) EST_crog_evp_909677 crog_evp Caligus rogercressey...    46   3.2    1
(FK866067) 00000965273J07 D. serrata mRNA from different dev...    46   3.2    1
(FK258887) USDA-FP_194850 Asian citrus psyllid midgut (Hemip...    46   3.2    1
(FK258782) USDA-FP_194745 Asian citrus psyllid midgut (Hemip...    46   3.2    1
(FK258274) USDA-FP_194237 Asian citrus psyllid midgut (Hemip...    46   3.2    1
(FK257203) USDA-FP_193166 Asian citrus psyllid midgut (Hemip...    46   3.2    1
(FK254644) USDA-FP_190607 Asian citrus psyllid midgut (Hemip...    46   3.2    1
(FK254062) USDA-FP_190025 Asian citrus psyllid midgut (Hemip...    46   3.2    1
(FF723771) XABT39922.fwd Gateway compatible cien cDNA librar...    46   3.2    1
(FF085244) CPAD-aab21e02.b1 PB2801_EST_CPAD1 Caenorhabditis ...    46   3.2    1
(EW965821) BRHL_05_H18_T7 Headlice composite library with al...    46   3.2    1
(AC120716) Rattus norvegicus clone CH230-128B4, *** SEQUENCI...    32   5.8    2
(AC105791) Rattus norvegicus clone CH230-253B17, *** SEQUENC...    32   5.9    2
(AC180453) Strongylocentrotus purpuratus clone R3-3009O16, W...    34   5.9    2
(BJ364852) Dictyostelium discoideum cDNA clone:ddc33a11, 5' ...    42   6.6    2
(BJ364915) Dictyostelium discoideum cDNA clone:ddc33o12, 5' ...    42   6.6    2
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862...    34   6.6    2
(BJ370649) Dictyostelium discoideum cDNA clone:ddc54j20, 5' ...    42   6.7    2
(CR925737) Zebrafish DNA sequence from clone DKEY-263O8 in l...    38   6.9    4
(BJ423466) Dictyostelium discoideum cDNA clone:ddv49f08, 5' ...    42   7.1    2
(FG304943) MPOAL28TR B. bovis infected B. microplus Ovary 40...    34   7.9    2
(DH504742) Monosiga ovata DNA, fosmid clone: MOF-075G19, gen...    32   8.0    2
(BJ420067) Dictyostelium discoideum cDNA clone:ddv38j04, 5' ...    42   8.0    2
(BJ367732) Dictyostelium discoideum cDNA clone:ddc43e21, 5' ...    42   8.0    2
(BJ366653) Dictyostelium discoideum cDNA clone:ddc39c21, 5' ...    42   8.0    2
(BJ371491) Dictyostelium discoideum cDNA clone:ddc58b09, 5' ...    42   8.1    2
(BJ369196) Dictyostelium discoideum cDNA clone:ddc49m17, 5' ...    42   8.4    2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    42   8.5    8
(BJ366231) Dictyostelium discoideum cDNA clone:ddc38a10, 5' ...    42   8.7    2
(BJ418299) Dictyostelium discoideum cDNA clone:ddv32d11, 5' ...    42   8.7    2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   9.0    9
(BJ366461) Dictyostelium discoideum cDNA clone:ddc39f02, 5' ...    42   9.4    2
(BJ366350) Dictyostelium discoideum cDNA clone:ddc38m13, 5' ...    42   9.4    2
(BJ371103) Dictyostelium discoideum cDNA clone:ddc56n13, 5' ...    42   9.4    2

>(AU034799) Dictyostelium discoideum slug cDNA, clone SLE343.
          Length = 672

 Score = 1037 bits (523), Expect(2) = 0.0
 Identities = 523/523 (100%)
 Strand = Plus / Plus


Query: 486  taatggataaagaggatttagaaattgttcatagggaaggtaaatcagatccagttaata 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    taatggataaagaggatttagaaattgttcatagggaaggtaaatcagatccagttaata 60


Query: 546  gaagaaatgaattgataagtagaaataagagaaatagagagattaaagataagttggcat 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   gaagaaatgaattgataagtagaaataagagaaatagagagattaaagataagttggcat 120


Query: 606  atacagttaaaaagagaattgaaatattgaaagcagcaggtaaagattcatcagagattg 665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  atacagttaaaaagagaattgaaatattgaaagcagcaggtaaagattcatcagagattg 180


Query: 666  aagagagtgatacaggtgacgaggaattggatagacaattctcaatgttattaattaatg 725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aagagagtgatacaggtgacgaggaattggatagacaattctcaatgttattaattaatg 240


Query: 726  aagcgatatttaaagcaattgggttattggaaactattgaaatcgaacttccaatgcttc 785
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  aagcgatatttaaagcaattgggttattggaaactattgaaatcgaacttccaatgcttc 300


Query: 786  aacaaattgaagttattaaagaacaaaacggtggtgttgtgccaccaccaaaggtatcca 845
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  aacaaattgaagttattaaagaacaaaacggtggtgttgtgccaccaccaaaggtatcca 360


Query: 846  ccaaaggtagtggtataggtaattttcaaatcttgccagatggcagaagaattgcattgg 905
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  ccaaaggtagtggtataggtaattttcaaatcttgccagatggcagaagaattgcattgg 420


Query: 906  atcgtgtttttagaccaagtcatatcttaccaactatgactcctcaagaaggtgccgaat 965
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atcgtgtttttagaccaagtcatatcttaccaactatgactcctcaagaaggtgccgaat 480


Query: 966  gggatatgcaccatggtggtatggtaaagggcaaaggtggtaa 1008
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  gggatatgcaccatggtggtatggtaaagggcaaaggtggtaa 523

 Score =  111 bits (56), Expect(2) = 0.0
 Identities = 56/56 (100%)
 Strand = Plus / Plus


Query: 1090 ttgggataattataaagaagataatcctaaaggttggggtaattcattaagaagat 1145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605  ttgggataattataaagaagataatcctaaaggttggggtaattcattaagaagat 660

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,194,241,828
Number of extensions: 72460874
Number of successful extensions: 6137435
Number of sequences better than 10.0: 193
Length of query: 1214
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1190
Effective length of database: 99,340,224,878
Effective search space: 118214867604820
Effective search space used: 118214867604820
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U01257-1 (Contig-U01257-1Q) /CSM_Contig/Contig-U01257-1Q.Seq.d
         (1214 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8LDQ4) RecName: Full=PP2A regulatory subunit TAP46; AltName: F...    67   1e-09
AM920436_688(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    59   3e-07
AP008217_205(AP008217|pid:none) Oryza sativa (japonica cultivar-...    55   4e-06
EU969080_1(EU969080|pid:none) Zea mays clone 325957 PP2A regulat...    55   4e-06
AB018116_5(AB018116|pid:none) Arabidopsis thaliana genomic DNA, ...    55   5e-06
FM992691_144(FM992691|pid:none) Candida dubliniensis CD36 chromo...    54   1e-05
BT039361_1(BT039361|pid:none) Zea mays full-length cDNA clone ZM...    52   6e-05
AM910985_179(AM910985|pid:none) Plasmodium knowlesi strain H chr...    50   1e-04
EU959932_1(EU959932|pid:none) Zea mays clone 220714 PP2A regulat...    49   3e-04
CU928168_342(CU928168|pid:none) Kluyveromyces thermotolerans str...    48   6e-04
AC159411_42(AC159411|pid:none) Trypanosoma brucei chromosome 3 c...    45   0.005
CR382127_305(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...    45   0.005
AP007166_250(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    44   0.015
CR382123_552(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    42   0.044
BC125601_1(BC125601|pid:none) Mus musculus immunoglobulin (CD79A...    40   0.13
AL844506_237(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.13
(Q9QZ29) RecName: Full=Immunoglobulin-binding protein 1b; AltNam...    40   0.22
CR382139_108(CR382139|pid:none) Debaryomyces hansenii strain CBS...    38   0.83
(O08836) RecName: Full=Immunoglobulin-binding protein 1; AltName...    37   1.1
(Q04372) RecName: Full=Type 2A phosphatase-associated protein 42...    37   1.4
(O30189) Uncharacterized protein AF_0047.  &AE000782_46(AE000782...    37   1.9
CP001370_63(CP001370|pid:none) Borrelia burgdorferi 72a plasmid ...    37   1.9
Z49211_17(Z49211|pid:none) S.cerevisiae chromosome XIII cosmid 9...    37   1.9
AY696352_1(AY696352|pid:none) Borrelia burgdorferi strain 163b p...    37   1.9
AE014187_56(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    36   2.4
(Q61249) RecName: Full=Immunoglobulin-binding protein 1; AltName...    36   2.4
AY775048_1(AY775048|pid:none) Nicotiana tabacum Avr9/Cf-9 rapidl...    36   3.2
AX405769_1(AX405769|pid:none) Sequence 184 from Patent WO0222660.      36   3.2
CU928181_254(CU928181|pid:none) Zygosaccharomyces rouxii strain ...    36   3.2
CP000114_1021(CP000114|pid:none) Streptococcus agalactiae A909, ...    35   4.1
AF411932_1(AF411932|pid:none) Plasmodium falciparum strain Malay...    35   4.1
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n...    35   4.1
AC024824_1(AC024824|pid:none) Caenorhabditis elegans cosmid Y55B...    35   5.4
CP001110_1886(CP001110|pid:none) Pelodictyon phaeoclathratiforme...    35   7.0
(Q32L27) RecName: Full=Ubiquitin-conjugating enzyme E2 Q2;      ...    35   7.0
AL844504_88(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    34   9.2
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt...    34   9.2
AY822026_1(AY822026|pid:none) Bacillus amyloliquefaciens strain ...    34   9.2
(Q9HBY5) RecName: Full=Ninein; AltName: Full=hNinein; AltName: F...    34   9.2
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    34   9.2

>(Q8LDQ4) RecName: Full=PP2A regulatory subunit TAP46; AltName:
           Full=2A phosphatase-associated protein of 46 kDa;
           &AF133708_1(AF133708|pid:none)
           &BT004072_1(BT004072|pid:none)
           &BT006150_1(BT006150|pid:none) &T52307(T52307)
          Length = 405

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 35/235 (14%)
 Frame = +2

Query: 221 SIHDFTLFESFTWGQKIYIELDESPMSTSDPEYQKQVKSSITHFFTASMNVSKQQIFSKN 400
           ++ +  L   F   +KI++   ES +       Q  VK     F      + K  +FS N
Sbjct: 5   AMEEMPLSVLFEQARKIHLAASESGVD------QDVVKKGCEMFQKCEDMIGKLALFSSN 58

Query: 401 EELEDIRTDSLTYXSIPYYLSDLYLXXXXMDK--------------------------ED 502
           E  EDI T++L Y  +PYYL++L       D+                          E+
Sbjct: 59  ETKEDISTNNLKYLLVPYYLAELTEKIIQEDRIQIVKASYAKLKEFFSFCEAMELVPDEE 118

Query: 503 LEIVHREGKSDPVNRRNELISRNKRNREIKDKLAYTVKKRIEILKAAGKDSSEIEESDTG 682
           LE   R G   P +RR   I+R KR +  + KL   +K+R E    + K S+     ++G
Sbjct: 119 LEASSRGGSGAPADRRALKIARFKRQKAAEAKL-LEIKERKERRGRSTKASALSTPVESG 177

Query: 683 -------DEELDRQFSMLLINEAIFKAIGLLETIEIELPMLQQIE--VIKEQNGG 820
                  D E +R+  +  IN AI KAI LLE ++ E  ML  I+   +K+  GG
Sbjct: 178 EDDIPDDDSEEEREAWLSSINLAICKAIDLLEMLKREEEMLSAIKERQLKDGEGG 232

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,321,652,533
Number of extensions: 23339571
Number of successful extensions: 66839
Number of sequences better than 10.0: 40
Number of HSP's gapped: 66614
Number of HSP's successfully gapped: 41
Length of query: 404
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 273
Effective length of database: 627,191,635
Effective search space: 171223316355
Effective search space used: 171223316355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.46  gvh: 0.53  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U01257-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0