Contig-U05942-1
Contig ID Contig-U05942-1
Contig update 2001. 8.30
Contig sequence
>Contig-U05942-1 (Contig-U05942-1Q) /CSM_Contig/Contig-U05942-1Q.Seq.d
CAAGAAATNTCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCT
TTGATGCCCAAAACAAAGTTGTAGGTAAAGTTAAGCTCCCAAATGTCTTG
ACCACCCCAATCCGTCCAGATTTAGTTAACTTTGTCCACACCAACTTAAA
CAAGAATGCTCGTCAAGCTTATGGTGCTGCTCCATACGCTGGTGAACAAA
CCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTATTCCTCGT
GTTCCAGGTTCAGGTACACACCGTTCAGGTCGTATGTATGGTCCAAACAA
GACCTGGAGACGTTGGAATCGTAAAGTTAACGTCAACCAAAAGAGATACG
CTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCCTCGTTATGGCT
CGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAA
CGAATCCGTTGACACCCTCCCAAAAAACCAAAGCTGCCGTTGAATTATTA
AAGAAAATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACA
TATTCGTGCTGGTGCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTA
AAGGTCCATTAGTCGTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTA
CGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTATT
AAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAAT
CCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCT
GCTCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGA
TATTGTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCA
GCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCA
TTAAAGAACTTACGTGCTATNATTAAATTAAACCCAGCCGCCGTCTCAAC
CCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCA
AAAAGAATCAATTAAGAGCTAAATAGTTGCTGCCACTTTCAACCAATAAT
TTTTAATAGA

Gap no gap
Contig length 1110
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 8414204
End point 8415318
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05942
List of clone(s)

est1=VFA325E,1,1111
Translated Amino Acid sequence
rnxthkk*llvhlskslmpktkl*vklssqms*ppqsvqi*ltlstpt*trmlvklmvll
htlvnkpllnhgvlvvlslvflvfqvqvhtvqvvcmvqtrpgdvgivkltstkrdtllsq
l*lpqlsqpslwlvvtesmvsmksh*SLPTNPLTPSQKTKAAVELLKKINAYADVTKVID
SKHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGH
LGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRAS
KVVVKRPTAPVRRSNPLKNLRAXIKLNPAAVSTRRTQVKSLKSKGIKVSKKNQLRAK*ll
plstnnf**


Translated Amino Acid sequence (All Frames)
Frame A:
qexshikndyssicpsl*cpkqscr*s*apkcldhpnpsrfs*lcphqlkqecssslwcc
sirw*tnlc*imgywsccrsysscsrfrytpfrsyvwskqdletles*s*rqpkeirccl
sfsclscpsprygswsqnqwyq*spishcqrir*hppkkpklplny*rkstptlmspkss
tpnifvlvlvkqetdvtksvkvh*ssslvrlpspkpyvtsqvlklptsqdsty*n*hqvv
t*vdsssglnplsnn*tqplvplpnhllkrkvtlshvq*lltlilsdsstlmksklplep
aksssnvqlpqfvvlth*rtyvlxln*tqppsqpvvlklnh*nqkvsklakrin*elnsc
chfqpiifnr


Frame B:
kkxht*kmttrpfvqvfdaqnkvvgkvklpnvlttpirpdlvnfvhtnlnknarqaygaa
pyageqtsaeswgtgravariprvpgsgthrsgrmygpnktwrrwnrkvnvnqkryavvs
alaasavpalvmarghringinevplvianesvdtlpknqscr*iikenqrlr*chqshr
lqtyscwcw*skkqtlqsp*rsisrrlw*dyrlpslt*hprc*scqrlktqlikistrws
lr*ihhld*irfrtirlnlwylcqiicskerlhsptsndc*r*ycqtrql**npscr*sq
qsrrqtsncpsssf*pikeltcyx*ikpsrrlnpsyss*iikikryqs*qkesiks*iva
atfnq*fli


Frame C:
rnxthkk*llvhlskslmpktkl*vklssqms*ppqsvqi*ltlstpt*trmlvklmvll
htlvnkpllnhgvlvvlslvflvfqvqvhtvqvvcmvqtrpgdvgivkltstkrdtllsq
l*lpqlsqpslwlvvtesmvsmksh*SLPTNPLTPSQKTKAAVELLKKINAYADVTKVID
SKHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGH
LGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIANADIVRLVNSDEIQAAVRAS
KVVVKRPTAPVRRSNPLKNLRAXIKLNPAAVSTRRTQVKSLKSKGIKVSKKNQLRAK*ll
plstnnf**


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05942-1 (Contig-U05942-1Q)
/CSM_Contig/Contig-U05942-1Q.Seq.d
(1110 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05942-1 (Contig-U05942-1Q) /CSM_Contig/Conti... 2189 0.0
Contig-U06081-1 (Contig-U06081-1Q) /CSM_Contig/Conti... 1596 0.0
Contig-U12406-1 (Contig-U12406-1Q) /CSM_Contig/Conti... 36 0.078
Contig-U09307-1 (Contig-U09307-1Q) /CSM_Contig/Conti... 36 0.078
Contig-U04959-1 (Contig-U04959-1Q) /CSM_Contig/Conti... 36 0.078
Contig-U13976-1 (Contig-U13976-1Q) /CSM_Contig/Conti... 34 0.31
Contig-U12894-1 (Contig-U12894-1Q) /CSM_Contig/Conti... 34 0.31
Contig-U12504-1 (Contig-U12504-1Q) /CSM_Contig/Conti... 34 0.31
Contig-U12008-1 (Contig-U12008-1Q) /CSM_Contig/Conti... 34 0.31
Contig-U03277-1 (Contig-U03277-1Q) /CSM_Contig/Conti... 34 0.31

>Contig-U05942-1 (Contig-U05942-1Q) /CSM_Contig/Contig-U05942-1Q.Seq.d
Length = 1110

Score = 2189 bits (1104), Expect = 0.0
Identities = 1110/1110 (100%)
Strand = Plus / Plus


Query: 1 caagaaatntcacacataaaaaatgactactcgtccatttgtccaagtctttgatgccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagaaatntcacacataaaaaatgactactcgtccatttgtccaagtctttgatgccca 60


Query: 61 aaacaaagttgtaggtaaagttaagctcccaaatgtcttgaccaccccaatccgtccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaacaaagttgtaggtaaagttaagctcccaaatgtcttgaccaccccaatccgtccaga 120


Query: 121 tttagttaactttgtccacaccaacttaaacaagaatgctcgtcaagcttatggtgctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttagttaactttgtccacaccaacttaaacaagaatgctcgtcaagcttatggtgctgc 180


Query: 181 tccatacgctggtgaacaaacctctgctgaatcatggggtactggtcgtgctgtcgctcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccatacgctggtgaacaaacctctgctgaatcatggggtactggtcgtgctgtcgctcg 240


Query: 241 tattcctcgtgttccaggttcaggtacacaccgttcaggtcgtatgtatggtccaaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tattcctcgtgttccaggttcaggtacacaccgttcaggtcgtatgtatggtccaaacaa 300


Query: 301 gacctggagacgttggaatcgtaaagttaacgtcaaccaaaagagatacgctgttgtctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gacctggagacgttggaatcgtaaagttaacgtcaaccaaaagagatacgctgttgtctc 360


Query: 361 agctttagctgcctcagctgtcccagccctcgttatggctcgtggtcacagaatcaatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agctttagctgcctcagctgtcccagccctcgttatggctcgtggtcacagaatcaatgg 420


Query: 421 tatcaatgaagtcccattagtcattgccaacgaatccgttgacaccctcccaaaaaacca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatcaatgaagtcccattagtcattgccaacgaatccgttgacaccctcccaaaaaacca 480


Query: 481 aagctgccgttgaattattaaagaaaatcaacgcctacgctgatgtcaccaaagtcatcg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagctgccgttgaattattaaagaaaatcaacgcctacgctgatgtcaccaaagtcatcg 540


Query: 541 actccaaacatattcgtgctggtgctggtaaagcaagaaacagacgttacaaagtccgta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 actccaaacatattcgtgctggtgctggtaaagcaagaaacagacgttacaaagtccgta 600


Query: 601 aaggtccattagtcgtcgtctctggtaagactaccgtctcccaagccttacgtaacatcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaggtccattagtcgtcgtctctggtaagactaccgtctcccaagccttacgtaacatcc 660


Query: 661 caggtgttgaagttgccaacgtctcaagactcaacttattaaaattagcaccaggtggtc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caggtgttgaagttgccaacgtctcaagactcaacttattaaaattagcaccaggtggtc 720


Query: 721 acttaggtagattcatcatctggactaaatccgctttcgaacaattagactcaacctttg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acttaggtagattcatcatctggactaaatccgctttcgaacaattagactcaacctttg 780


Query: 781 gtacctttgccaaatcatctgctcaaaagaaaggttacactctcccacgtccaatgattg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gtacctttgccaaatcatctgctcaaaagaaaggttacactctcccacgtccaatgattg 840


Query: 841 ctaacgctgatattgtcagactcgtcaactctgatgaaatccaagctgccgttagagcca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ctaacgctgatattgtcagactcgtcaactctgatgaaatccaagctgccgttagagcca 900


Query: 901 gcaaagtcgtcgtcaaacgtccaactgccccagttcgtcgttctaacccattaaagaact 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gcaaagtcgtcgtcaaacgtccaactgccccagttcgtcgttctaacccattaaagaact 960


Query: 961 tacgtgctatnattaaattaaacccagccgccgtctcaacccgtcgtactcaagttaaat 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tacgtgctatnattaaattaaacccagccgccgtctcaacccgtcgtactcaagttaaat 1020


Query: 1021 cattaaaatcaaaaggtatcaaagttagcaaaaagaatcaattaagagctaaatagttgc 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cattaaaatcaaaaggtatcaaagttagcaaaaagaatcaattaagagctaaatagttgc 1080


Query: 1081 tgccactttcaaccaataatttttaataga 1110
||||||||||||||||||||||||||||||
Sbjct: 1081 tgccactttcaaccaataatttttaataga 1110


>Contig-U06081-1 (Contig-U06081-1Q) /CSM_Contig/Contig-U06081-1Q.Seq.d
Length = 1059

Score = 1596 bits (805), Expect = 0.0
Identities = 824/828 (99%), Gaps = 2/828 (0%)
Strand = Plus / Plus


Query: 278 ggtcgtatgtatggtccaaacaagacctggagacgttggaatcgtaaagttaacgtcaac 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ggtcgtatgtatggtccaaacaagacctggagacgttggaatcgtaaagttaacgtcaac 284


Query: 338 caaaagagatacgctgttgtctcagctttagctgcctcagctgtcccagccctcgttatg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 caaaagagatacgctgttgtctcagctttagctgcctcagctgtcccagccctcgttatg 344


Query: 398 gctcgtggtcacagaatcaatggtatcaatgaagtcccattagtcattgccaacgaatcc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gctcgtggtcacagaatcaatggtatcaatgaagtcccattagtcattgccaacgaatcc 404


Query: 458 gttgacaccctcccaaaaaaccaaagctgccgttgaattattaaagaaaatcaacgccta 517
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gttgacaccctcc-aaaaaaccaaagctgccgttgaattattaaagaaaatcaacgccta 463


Query: 518 cgctgatgtcaccaaagtcatcgactccaaacatattcgtgctggtgctggtaaagcaag 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cgctgatgtcaccaaagtcatcgactccaaacatattcgtgctggtgctggtaaagcaag 523


Query: 578 aaacagacgttacaaagtccgtaaaggtccattagtcgtcgtctctggtaagactaccgt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaacagacgttacaaagtccgtaaaggtccattagtcgtcgtctctggtaagactaccgt 583


Query: 638 ctcccaagccttacgtaacatcccaggtgttgaagttgccaacgtctcaagactcaactt 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctcccaagccttacgtaacatcccaggtgttgaagttgccaacgtctcaagactcaactt 643


Query: 698 attaaaattagcaccaggtggtcacttaggtagattcatcatctggactaaatccgcttt 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 attaaaattagcaccaggtggtcacttaggtagattcatcatctggactaaatccgcttt 703


Query: 758 cgaacaattagactcaacctttggtacctttgccaaatcatctgctcaaaagaaaggtta 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cgaacaattagactcaacctttggtacctttgccaaatcatctgctcaaaagaaaggtta 763


Query: 818 cactctcccacgtccaatgattgctaacgctgatattgtcagactcgtcaactctgatga 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cactctcccacgtccaatgattgctaacgctgatattgtcagactcgtcaactctgatga 823


Query: 878 aatccaagctgccgttagagccagcaaagtcgtcgtcaaacgtccaactgccccagttcg 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aatccaagctgccgttagagccagcaaagtcgtcgtcaaacgtccaactgccccagttcg 883


Query: 938 tcgttctaacccattaaagaacttacgtgctatnattaaattaaacccagccgccgtctc 997
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 884 tcgttctaacccattaaagaacttacgtgctatgattaaattaaacccagccgccgtctc 943


Query: 998 aacccgtcgtactcaagttaaatcattaaaatcaaaaggtatcaaagttagcaaaaagaa 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 aacccgtcgtactcaagttaaatcattaaaatcaaaaggtatcaaagttagcaaaaagaa 1003


Query: 1058 tcaattaagagctaaa-tagttgctgccactttcaaccaataattttt 1104
|||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 1004 tcaattaagagctaaattagttgctgccactttcaaccaataaatttt 1051


Score = 305 bits (154), Expect = 5e-83
Identities = 154/154 (100%)
Strand = Plus / Plus


Query: 10 tcacacataaaaaatgactactcgtccatttgtccaagtctttgatgcccaaaacaaagt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tcacacataaaaaatgactactcgtccatttgtccaagtctttgatgcccaaaacaaagt 61


Query: 70 tgtaggtaaagttaagctcccaaatgtcttgaccaccccaatccgtccagatttagttaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgtaggtaaagttaagctcccaaatgtcttgaccaccccaatccgtccagatttagttaa 121


Query: 130 ctttgtccacaccaacttaaacaagaatgctcgt 163
||||||||||||||||||||||||||||||||||
Sbjct: 122 ctttgtccacaccaacttaaacaagaatgctcgt 155


Score = 91.7 bits (46), Expect = 2e-18
Identities = 46/46 (100%)
Strand = Plus / Plus


Query: 236 gctcgtattcctcgtgttccaggttcaggtacacaccgttcaggtc 281
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gctcgtattcctcgtgttccaggttcaggtacacaccgttcaggtc 195


>Contig-U12406-1 (Contig-U12406-1Q) /CSM_Contig/Contig-U12406-1Q.Seq.d
Length = 1613

Score = 36.2 bits (18), Expect = 0.078
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1022 attaaaatcaaaaggtat 1039
||||||||||||||||||
Sbjct: 89 attaaaatcaaaaggtat 106


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7344
Number of Sequences: 6905
Number of extensions: 7344
Number of successful extensions: 769
Number of sequences better than 10.0: 71
length of query: 1110
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1094
effective length of database: 5,564,391
effective search space: 6087443754
effective search space used: 6087443754
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 6
Homology vs DNA
Query= Contig-U05942-1 (Contig-U05942-1Q) /CSM_Contig/Contig-U05942-1Q.Seq.d
(1110 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ428787) Dictyostelium discoideum cDNA clone:ddv1b07, 3' e... 1360 0.0 1
(BJ430144) Dictyostelium discoideum cDNA clone:ddv6a08, 3' e... 1289 0.0 2
(BJ434331) Dictyostelium discoideum cDNA clone:ddv16f15, 3' ... 1287 0.0 2
(BJ428966) Dictyostelium discoideum cDNA clone:ddv1j24, 3' e... 1259 0.0 2
(BJ428833) Dictyostelium discoideum cDNA clone:ddv1l12, 3' e... 1257 0.0 3
(BJ428747) Dictyostelium discoideum cDNA clone:ddv1h03, 3' e... 1253 0.0 2
(BJ428893) Dictyostelium discoideum cDNA clone:ddv1i16, 3' e... 1245 0.0 2
(BJ429284) Dictyostelium discoideum cDNA clone:ddv2n24, 3' e... 1241 0.0 2
(BJ436186) Dictyostelium discoideum cDNA clone:ddv30d10, 3' ... 1239 0.0 2
(BJ436171) Dictyostelium discoideum cDNA clone:ddv30p06, 3' ... 1237 0.0 2
(BJ429266) Dictyostelium discoideum cDNA clone:ddv2k22, 3' e... 1231 0.0 3
(BJ436335) Dictyostelium discoideum cDNA clone:ddv30h20, 3' ... 1217 0.0 2
(BJ435410) Dictyostelium discoideum cDNA clone:ddv27e05, 3' ... 1213 0.0 3
(BJ433772) Dictyostelium discoideum cDNA clone:ddv22k22, 3' ... 1211 0.0 2
(BJ434885) Dictyostelium discoideum cDNA clone:ddv25d07, 3' ... 1197 0.0 3
(BJ429532) Dictyostelium discoideum cDNA clone:ddv3i19, 3' e... 1195 0.0 1
(AU267108) Dictyostelium discoideum vegetative cDNA clone:VS... 1193 0.0 2
(AU052226) Dictyostelium discoideum slug cDNA, clone SLA277. 1193 0.0 3
(AU039436) Dictyostelium discoideum slug cDNA, clone SLH783. 1193 0.0 2
(AU039424) Dictyostelium discoideum slug cDNA, clone SLH759. 1193 0.0 2
(BJ437663) Dictyostelium discoideum cDNA clone:ddv34p23, 3' ... 1193 0.0 3
(BJ435939) Dictyostelium discoideum cDNA clone:ddv29d06, 3' ... 1193 0.0 3
(BJ435689) Dictyostelium discoideum cDNA clone:ddv27m20, 3' ... 1193 0.0 3
(BJ435687) Dictyostelium discoideum cDNA clone:ddv27l20, 3' ... 1193 0.0 3
(BJ435678) Dictyostelium discoideum cDNA clone:ddv27j22, 3' ... 1193 0.0 3
(BJ435513) Dictyostelium discoideum cDNA clone:ddv27j10, 3' ... 1193 0.0 3
(BJ434483) Dictyostelium discoideum cDNA clone:ddv24b04, 3' ... 1193 0.0 4
(BJ434078) Dictyostelium discoideum cDNA clone:ddv23g22, 3' ... 1193 0.0 4
(BJ433115) Dictyostelium discoideum cDNA clone:ddv20g21, 3' ... 1193 0.0 2
(BJ433011) Dictyostelium discoideum cDNA clone:ddv20b18, 3' ... 1193 0.0 4
(BJ432739) Dictyostelium discoideum cDNA clone:ddv19j17, 3' ... 1193 0.0 2
(BJ432698) Dictyostelium discoideum cDNA clone:ddv19p11, 3' ... 1193 0.0 3
(BJ432606) Dictyostelium discoideum cDNA clone:ddv19n03, 3' ... 1193 0.0 3
(BJ432567) Dictyostelium discoideum cDNA clone:ddv19g03, 3' ... 1193 0.0 3
(BJ432529) Dictyostelium discoideum cDNA clone:ddv18p19, 3' ... 1193 0.0 4
(BJ432363) Dictyostelium discoideum cDNA clone:ddv18a13, 3' ... 1193 0.0 4
(BJ432108) Dictyostelium discoideum cDNA clone:ddv17l18, 3' ... 1193 0.0 3
(BJ432017) Dictyostelium discoideum cDNA clone:ddv17h11, 3' ... 1193 0.0 3
(BJ432000) Dictyostelium discoideum cDNA clone:ddv17e08, 3' ... 1193 0.0 3
(BJ431271) Dictyostelium discoideum cDNA clone:ddv13e15, 3' ... 1193 0.0 3
(BJ430581) Dictyostelium discoideum cDNA clone:ddv7d24, 3' e... 1193 0.0 3
(BJ430550) Dictyostelium discoideum cDNA clone:ddv7m18, 3' e... 1193 0.0 3
(BJ430410) Dictyostelium discoideum cDNA clone:ddv7m02, 3' e... 1193 0.0 3
(BJ430386) Dictyostelium discoideum cDNA clone:ddv7g03, 3' e... 1193 0.0 3
(BJ430120) Dictyostelium discoideum cDNA clone:ddv6l05, 3' e... 1193 0.0 3
(BJ430081) Dictyostelium discoideum cDNA clone:ddv6c04, 3' e... 1193 0.0 3
(BJ429648) Dictyostelium discoideum cDNA clone:ddv4l07, 3' e... 1193 0.0 3
(BJ429234) Dictyostelium discoideum cDNA clone:ddv2e20, 3' e... 1193 0.0 2
(BJ429197) Dictyostelium discoideum cDNA clone:ddv2m18, 3' e... 1193 0.0 3
(BJ428520) Dictyostelium discoideum cDNA clone:ddv12d11, 3' ... 1193 0.0 3
(BJ428499) Dictyostelium discoideum cDNA clone:ddv12n03, 3' ... 1193 0.0 3
(BJ428454) Dictyostelium discoideum cDNA clone:ddv12b05, 3' ... 1193 0.0 3
(BJ428441) Dictyostelium discoideum cDNA clone:ddv11o23, 3' ... 1193 0.0 3
(BJ428388) Dictyostelium discoideum cDNA clone:ddv11b21, 3' ... 1193 0.0 4
(BJ428340) Dictyostelium discoideum cDNA clone:ddv11g18, 3' ... 1193 0.0 3
(BJ428283) Dictyostelium discoideum cDNA clone:ddv11j11, 3' ... 1193 0.0 3
(BJ428255) Dictyostelium discoideum cDNA clone:ddv11d12, 3' ... 1193 0.0 3
(BJ428234) Dictyostelium discoideum cDNA clone:ddv11p02, 3' ... 1193 0.0 3
(BJ428160) Dictyostelium discoideum cDNA clone:ddv10o23, 3' ... 1193 0.0 2
(BJ377854) Dictyostelium discoideum cDNA clone:ddc26n02, 3' ... 1193 0.0 3
(BJ346913) Dictyostelium discoideum cDNA clone:dda25c17, 3' ... 1193 0.0 4
(BJ429401) Dictyostelium discoideum cDNA clone:ddv3i09, 3' e... 1189 0.0 3
(AU039929) Dictyostelium discoideum slug cDNA, clone SLG768. 1187 0.0 2
(AU033650) Dictyostelium discoideum slug cDNA, clone SLB269. 1187 0.0 2
(BJ436281) Dictyostelium discoideum cDNA clone:ddv30m15, 3' ... 1187 0.0 3
(BJ436015) Dictyostelium discoideum cDNA clone:ddv29p09, 3' ... 1187 0.0 3
(AU034324) Dictyostelium discoideum slug cDNA, clone SLC690. 1185 0.0 2
(AU034318) Dictyostelium discoideum slug cDNA, clone SLC676. 1185 0.0 2
(BJ435192) Dictyostelium discoideum cDNA clone:ddv26j10, 3' ... 1185 0.0 2
(BJ434312) Dictyostelium discoideum cDNA clone:ddv16b18, 3' ... 1185 0.0 3
(BJ433871) Dictyostelium discoideum cDNA clone:ddv23o03, 3' ... 1185 0.0 4
(BJ431882) Dictyostelium discoideum cDNA clone:ddv15m19, 3' ... 1185 0.0 5
(BJ431492) Dictyostelium discoideum cDNA clone:ddv14j10, 3' ... 1185 0.0 3
(BJ431467) Dictyostelium discoideum cDNA clone:ddv14c12, 3' ... 1185 0.0 3
(BJ430932) Dictyostelium discoideum cDNA clone:ddv9f09, 3' e... 1185 0.0 4
(BJ430805) Dictyostelium discoideum cDNA clone:ddv8i22, 3' e... 1185 0.0 3
(BJ430531) Dictyostelium discoideum cDNA clone:ddv7h13, 3' e... 1185 0.0 3
(BJ430499) Dictyostelium discoideum cDNA clone:ddv7p10, 3' e... 1185 0.0 3
(BJ430155) Dictyostelium discoideum cDNA clone:ddv6c12, 3' e... 1185 0.0 3
(BJ430069) Dictyostelium discoideum cDNA clone:ddv6a02, 3' e... 1185 0.0 3
(BJ428585) Dictyostelium discoideum cDNA clone:ddv12b17, 3' ... 1185 0.0 4
(BJ428532) Dictyostelium discoideum cDNA clone:ddv12g09, 3' ... 1185 0.0 3
(BJ402555) Dictyostelium discoideum cDNA clone:dds17f12, 3' ... 1185 0.0 4
(BJ436298) Dictyostelium discoideum cDNA clone:ddv30p17, 3' ... 1181 0.0 3
(BJ429177) Dictyostelium discoideum cDNA clone:ddv2i16, 3' e... 1181 0.0 3
(AU052227) Dictyostelium discoideum slug cDNA, clone SLA278. 1179 0.0 2
(BJ434494) Dictyostelium discoideum cDNA clone:ddv24d06, 3' ... 1179 0.0 2
(BJ428348) Dictyostelium discoideum cDNA clone:ddv11i17, 3' ... 1179 0.0 2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 1178 0.0 4
(BJ433553) Dictyostelium discoideum cDNA clone:ddv22b09, 3' ... 1178 0.0 3
(BJ433101) Dictyostelium discoideum cDNA clone:ddv20d24, 3' ... 1178 0.0 2
(BJ433724) Dictyostelium discoideum cDNA clone:ddv22b23, 3' ... 1176 0.0 2
(BJ432668) Dictyostelium discoideum cDNA clone:ddv19k07, 3' ... 1176 0.0 1
(BJ433774) Dictyostelium discoideum cDNA clone:ddv22k24, 3' ... 1174 0.0 2
(BJ432284) Dictyostelium discoideum cDNA clone:ddv18b09, 3' ... 1174 0.0 3
(BJ428531) Dictyostelium discoideum cDNA clone:ddv12g07, 3' ... 1174 0.0 2
(BJ431352) Dictyostelium discoideum cDNA clone:ddv13i22, 3' ... 1170 0.0 2
(BJ430221) Dictyostelium discoideum cDNA clone:ddv6b15, 3' e... 1170 0.0 2
(BJ435350) Dictyostelium discoideum cDNA clone:ddv26i22, 3' ... 1168 0.0 2
(BJ434416) Dictyostelium discoideum cDNA clone:ddv16e23, 3' ... 1168 0.0 4

>(BJ428787) Dictyostelium discoideum cDNA clone:ddv1b07, 3' end,
single read.
Length = 699

Score = 1360 bits (686), Expect = 0.0
Identities = 695/698 (99%)
Strand = Plus / Minus


Query: 413 atcaatggtatcaatgaagtcccattagtcattgccaacgaatccgttgacaccctccca 472
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 699 atcaatggtatcaatgaagtcccattagtcattgccaangaatccgttgacaccntccca 640


Query: 473 aaaaaccaaagctgccgttgaattattaaagaaaatcaacgcctacgctgatgtcaccaa 532
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 639 aaaaaccaaagctgccgttgaattattaaagaaaatcaacgcntacgctgatgtcaccaa 580


Query: 533 agtcatcgactccaaacatattcgtgctggtgctggtaaagcaagaaacagacgttacaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agtcatcgactccaaacatattcgtgctggtgctggtaaagcaagaaacagacgttacaa 520


Query: 593 agtccgtaaaggtccattagtcgtcgtctctggtaagactaccgtctcccaagccttacg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agtccgtaaaggtccattagtcgtcgtctctggtaagactaccgtctcccaagccttacg 460


Query: 653 taacatcccaggtgttgaagttgccaacgtctcaagactcaacttattaaaattagcacc 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 taacatcccaggtgttgaagttgccaacgtctcaagactcaacttattaaaattagcacc 400


Query: 713 aggtggtcacttaggtagattcatcatctggactaaatccgctttcgaacaattagactc 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aggtggtcacttaggtagattcatcatctggactaaatccgctttcgaacaattagactc 340


Query: 773 aacctttggtacctttgccaaatcatctgctcaaaagaaaggttacactctcccacgtcc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aacctttggtacctttgccaaatcatctgctcaaaagaaaggttacactctcccacgtcc 280


Query: 833 aatgattgctaacgctgatattgtcagactcgtcaactctgatgaaatccaagctgccgt 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aatgattgctaacgctgatattgtcagactcgtcaactctgatgaaatccaagctgccgt 220


Query: 893 tagagccagcaaagtcgtcgtcaaacgtccaactgccccagttcgtcgttctaacccatt 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tagagccagcaaagtcgtcgtcaaacgtccaactgccccagttcgtcgttctaacccatt 160


Query: 953 aaagaacttacgtgctatnattaaattaaacccagccgccgtctcaacccgtcgtactca 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aaagaacttacgtgctatnattaaattaaacccagccgccgtctcaacccgtcgtactca 100


Query: 1013 agttaaatcattaaaatcaaaaggtatcaaagttagcaaaaagaatcaattaagagctaa 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agttaaatcattaaaatcaaaaggtatcaaagttagcaaaaagaatcaattaagagctaa 40


Query: 1073 atagttgctgccactttcaaccaataatttttaataga 1110
||||||||||||||||||||||||||||||||||||||
Sbjct: 39 atagttgctgccactttcaaccaataatttttaataga 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,025,033,299
Number of extensions: 54208037
Number of successful extensions: 3892535
Number of sequences better than 10.0: 9355
Length of query: 1110
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1086
Effective length of database: 97,308,875,965
Effective search space: 105677439297990
Effective search space used: 105677439297990
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.20
Homology vs Protein
Query= Contig-U05942-1 (Contig-U05942-1Q) /CSM_Contig/Contig-U05942-1Q.Seq.d
(1110 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AY961533_1(AY961533|pid:none) Lysiphlebus testaceipes ribosomal ... 183 8e-82
CP001333_223(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 180 1e-81
AY190725_1(AY190725|pid:none) Pagrus major ribosomal protein L4 ... 172 2e-81
CR932189_1(CR932189|pid:none) Paramecium tetraurelia, telomerase... 176 1e-80
(Q9D8E6) RecName: Full=60S ribosomal protein L4; &AK008098_1(AK... 167 1e-79
(P36578) RecName: Full=60S ribosomal protein L4; AltName: Full=L... 165 5e-79
(Q58DW0) RecName: Full=60S ribosomal protein L4; &BC102521_1(BC... 165 6e-79
AB208977_1(AB208977|pid:none) Homo sapiens mRNA for ribosomal pr... 164 1e-78
AB463231_1(AB463231|pid:none) Synthetic construct DNA, clone: pF... 164 1e-78
DQ440454_1(DQ440454|pid:none) Aedes aegypti clone AET-617a ribos... 174 1e-78
(Q5RCR3) RecName: Full=60S ribosomal protein L4; &CR858206_1(CR... 164 1e-78
AM920436_1652(AM920436|pid:none) Penicillium chrysogenum Wiscons... 166 1e-78
AY769271_1(AY769271|pid:none) Bombyx mori ribosomal protein L4 (... 179 2e-78
AP007162_414(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 175 4e-78
FM992688_1292(FM992688|pid:none) Candida dubliniensis CD36 chrom... 167 7e-78
(Q4R5P9) RecName: Full=60S ribosomal protein L4; &AB169494_1(AB... 163 9e-78
AK223057_1(AK223057|pid:none) Homo sapiens mRNA for ribosomal pr... 162 1e-77
CR382134_50(CR382134|pid:none) Debaryomyces hansenii strain CBS7... 167 1e-77
EU523116_1(EU523116|pid:none) Heliothis virescens ribosomal prot... 174 3e-77
AM494966_115(AM494966|pid:none) Leishmania braziliensis chromoso... 171 1e-75
AE016814_379(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 166 2e-75
FJ168553_11(FJ168553|pid:none) Bodo saltans clone fosmid 46A11, ... 171 3e-75
(Q28346) RecName: Full=60S ribosomal protein L4; AltName: Full=L1; 154 5e-75
AK297490_1(AK297490|pid:none) Homo sapiens cDNA FLJ50996 complet... 154 5e-75
AC091483_48(AC091483|pid:none) Trypanosoma brucei chromosome 3 c... 162 3e-74
AM910992_260(AM910992|pid:none) Plasmodium knowlesi strain H chr... 154 4e-74
BT078104_1(BT078104|pid:none) Lepeophtheirus salmonis clone lsal... 165 1e-73
FN392319_28(FN392319|pid:none) Pichia pastoris GS115 chromosome ... 156 1e-72
AK012432_1(AK012432|pid:none) Mus musculus 11 days embryo whole ... 166 3e-51
EF147296_1(EF147296|pid:none) Populus trichocarpa clone WS0122_F... 202 2e-50
EF676106_1(EF676106|pid:none) Picea sitchensis clone WS02710_D09... 200 6e-50
AC123596_24(AC123596|pid:none) Medicago truncatula clone mth1-17... 197 7e-49
AB236838_1(AB236838|pid:none) Trifolium pratense RNA for putativ... 195 3e-48
CP000883_19(CP000883|pid:none) Hemiselmis andersenii chromosome ... 117 3e-48
AC148756_18(AC148756|pid:none) Medicago truncatula clone mth2-22... 194 6e-48
CP000595_105(CP000595|pid:none) Ostreococcus lucimarinus CCE9901... 192 2e-47
CR940348_389(CR940348|pid:none) Theileria annulata strain Ankara... 140 3e-47
(Q9SF40) RecName: Full=60S ribosomal protein L4-1; Shor... 191 5e-47
(P49691) RecName: Full=60S ribosomal protein L4-2; AltName: Full... 189 1e-46
AU066549_1(AU066549|pid:none) Chlamydomonas sp. HS-5 mRNA for 60... 189 2e-46
AF083031_104(AF083031|pid:none) Guillardia theta nucleomorph chr... 132 6e-46
AK117624_1(AK117624|pid:none) Arabidopsis thaliana At5g02870 mRN... 187 7e-46
BT033748_1(BT033748|pid:none) Zea mays full-length cDNA clone ZM... 186 2e-45
(P35679) RecName: Full=60S ribosomal protein L4-A; AltName: Full... 184 5e-45
(Q9P784) RecName: Full=60S ribosomal protein L4-B; &AL353012_6(... 184 5e-45
EU959581_1(EU959581|pid:none) Zea mays clone 218704 60S ribosoma... 184 6e-45
AK060711_1(AK060711|pid:none) Oryza sativa Japonica Group cDNA c... 183 1e-44
AM048989_1(AM048989|pid:none) Eucinetus sp. APV-2005 mRNA for ri... 181 4e-44
AF526207_1(AF526207|pid:none) Argopecten irradians isolate iolsa... 138 7e-44
S41640(S41640;S34289)ribosomal protein L4.e - fission yeast (Sch... 179 1e-43
BT063074_1(BT063074|pid:none) Zea mays full-length cDNA clone ZM... 179 2e-43
AB071329_1(AB071329|pid:none) Paramecium caudatum mRNA for ribos... 176 1e-42
AY829781_1(AY829781|pid:none) Lonomia obliqua ribosomal protein ... 173 4e-42
(P49165) RecName: Full=60S ribosomal protein L4; AltName: Full=L... 174 6e-42
(O15594) RecName: Full=60S ribosomal protein L4; AltName: Full=L... 124 8e-42
BT045675_1(BT045675|pid:none) Salmo salar clone ssal-rgf-528-189... 171 4e-41
AM048990_1(AM048990|pid:none) Micromalthus debilis partial mRNA ... 171 4e-41
AY231643_1(AY231643|pid:none) Drosophila yakuba clone yak-em_RpL... 171 5e-41
BT074724_1(BT074724|pid:none) Osmerus mordax clone omor-rgc-503-... 169 2e-40
CP000080_114(CP000080|pid:none) Leishmania major strain Friedlin... 169 2e-40
CR382129_256(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 167 6e-40
BC063811_1(BC063811|pid:none) Rattus norvegicus ribosomal protei... 167 6e-40
(P50878) RecName: Full=60S ribosomal protein L4; AltName: Full=L... 167 6e-40
JC4277(JC4277;PC4076)ribosomal protein L4, cytosolic [validated]... 167 6e-40
BC167741_1(BC167741|pid:none) Xenopus tropicalis cDNA clone MGC:... 167 8e-40
BC041744_1(BC041744|pid:none) Xenopus laevis ribosomal protein L... 166 1e-39
BC054956_1(BC054956|pid:none) Xenopus laevis ribosomal protein L... 166 1e-39
BC049520_1(BC049520|pid:none) Danio rerio ribosomal protein L4, ... 166 1e-39
(P49626) RecName: Full=60S ribosomal protein L4-B; AltName: Full... 166 1e-39
(P10664) RecName: Full=60S ribosomal protein L4-A; AltName: Full... 166 1e-39
BC043895_1(BC043895|pid:none) Xenopus laevis ribosomal protein L... 166 2e-39
EU558306_1(EU558306|pid:none) Novocrania anomala putative 60S ri... 161 2e-39
DQ845176_1(DQ845176|pid:none) Sus scrofa ribosomal protein L4 mR... 164 4e-39
AJ720803_1(AJ720803|pid:none) Gallus gallus mRNA for hypothetica... 164 5e-39
AB429252_1(AB429252|pid:none) Dicyema japonicum rpl4 gene for ri... 164 7e-39
AE017350_186(AE017350|pid:none) Cryptococcus neoformans var. neo... 164 7e-39
EU441460_1(EU441460|pid:none) Xenopus borealis clone L1.a riboso... 164 7e-39
DQ223554_1(DQ223554|pid:none) Ovis aries clone TO-DOWN-A16-3 rib... 159 3e-38
DQ211981_1(DQ211981|pid:none) Toxoplasma gondii 60S ribosomal su... 159 2e-37
CR380948_179(CR380948|pid:none) Candida glabrata strain CBS138 c... 159 2e-37
CU640366_615(CU640366|pid:none) Podospora anserina genomic DNA c... 156 1e-36
DQ480548_1(DQ480548|pid:none) Schistosoma mansoni ribosomal prot... 155 2e-36
AK297484_1(AK297484|pid:none) Homo sapiens cDNA FLJ50994 complet... 146 6e-36
BT046403_1(BT046403|pid:none) Salmo salar clone ssal-evd-533-236... 154 7e-36
EU302528_1(EU302528|pid:none) Lineus viridis ribosomal protein r... 154 7e-36
FN320321_1(FN320321|pid:none) Schistosoma japonicum isolate Anhu... 152 2e-35
FN320319_1(FN320319|pid:none) Schistosoma japonicum isolate Anhu... 151 4e-35
FN320318_1(FN320318|pid:none) Schistosoma japonicum isolate Anhu... 150 6e-35
AY814062_1(AY814062|pid:none) Schistosoma japonicum SJCHGC06667 ... 150 6e-35
AY389964_1(AY389964|pid:none) Gallus gallus ribosomal protein L4... 149 1e-34
AL844504_70(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 149 2e-34
EU116845_1(EU116845|pid:none) Sipunculus nudus putative ribosoma... 147 6e-34
AY389935_1(AY389935|pid:none) Latimeria chalumnae ribosomal prot... 146 1e-33
EU446260_1(EU446260|pid:none) Xenopus muelleri ribosomal protein... 144 7e-33
FJ767939_1(FJ767939|pid:none) Pectinaria gouldii ribosomal prote... 143 9e-33
(A5UL88) RecName: Full=50S ribosomal protein L4P; &CP000678_761... 88 5e-32
(Q4JB41) RecName: Full=50S ribosomal protein L4P; &CP000077_558... 93 1e-31
AJ315139_1(AJ315139|pid:none) Oncorhynchus mykiss partial mRNA f... 139 1e-31
(O26111) RecName: Full=50S ribosomal protein L4P; &AE000666_3(A... 88 3e-31
M22583_1(M22583|pid:none) Yeast (S.cerevisiae) ribosomal protein... 138 4e-31
AK298224_1(AK298224|pid:none) Homo sapiens cDNA FLJ51018 complet... 137 9e-31
CP000080_113(CP000080|pid:none) Leishmania major strain Friedlin... 136 1e-30
DQ363679_1(DQ363679|pid:none) Streblomastix strix RPL4 gene, par... 134 4e-30
(Q5JDI0) RecName: Full=50S ribosomal protein L4P; &AP006878_154... 94 8e-29
(Q8TY91) RecName: Full=50S ribosomal protein L4P; &AE009439_414... 77 1e-28
CP001365_2417(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 80 4e-28
EU686639_2(EU686639|pid:none) Uncultured marine group II euryarc... 82 9e-27
CP000575_1001(CP000575|pid:none) Staphylothermus marinus F1, com... 75 9e-27
FM200064_1(FM200064|pid:none) Histomonas meleagridis partial mRN... 123 1e-26
(A7I5P0) RecName: Full=50S ribosomal protein L4P; &CP000780_527... 83 1e-26
(B0R657) RecName: Full=50S ribosomal protein L4P; &(Q9HPD3) Rec... 72 3e-26
EU686610_11(EU686610|pid:none) Uncultured marine group II euryar... 82 4e-26
(A3CSZ8) RecName: Full=50S ribosomal protein L4P; &CP000562_563... 77 6e-26
(Q8ZW51) RecName: Full=50S ribosomal protein L4P; &AE009441_135... 82 9e-26
(Q2FU92) RecName: Full=50S ribosomal protein L4P; &CP000254_217... 81 4e-25
CP000660_1976(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 80 6e-25
(Q9YFM1) RecName: Full=50S ribosomal protein L4P; &BA000002_160... 76 2e-24
B72780(B72780)probable ribosomal protein L4 APE0228 - Aeropyrum ... 76 2e-24
CP001014_794(CP001014|pid:none) Thermoproteus neutrophilus V24St... 79 3e-24
DQ156348_5(DQ156348|pid:none) Uncultured marine group II euryarc... 79 1e-23
(P12735) RecName: Full=50S ribosomal protein L4P; AltName: Full=... 68 1e-23
AB006961_4(AB006961|pid:none) Halobacterium halobium gene for ri... 68 5e-23
BX927065_5(BX927065|pid:none) Zebrafish DNA sequence from clone ... 110 9e-23
CP000816_961(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 70 1e-22
AM114193_651(AM114193|pid:none) Uncultured methanogenic archaeon... 78 2e-20
(P60847) RecName: Full=50S ribosomal protein L4P; &AE017199_145... 70 5e-20
CP000559_82(CP000559|pid:none) Methanocorpusculum labreanum Z, c... 66 1e-19
(Q46G96) RecName: Full=50S ribosomal protein L4P; &CP000099_102... 99 3e-19
(Q97BX6) RecName: Full=50S ribosomal protein L4P; &BA000011_329... 94 1e-17
BA000023_477(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 91 6e-17
(O28355) RecName: Full=50S ribosomal protein L4P; &AE000782_189... 90 2e-16
(O59420) RecName: Full=50S ribosomal protein L4P; &BA000001_182... 89 4e-16
(Q9V1T6) RecName: Full=50S ribosomal protein L4P; &AJ248284_43(... 89 4e-16
(P14117) RecName: Full=60S ribosomal protein L4; AltName: Full=L... 86 2e-15
(A6UV67) RecName: Full=50S ribosomal protein L4P; &CP000743_796... 85 4e-15
CP000561_1562(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 85 5e-15
(Q9UXA6) RecName: Full=50S ribosomal protein L4P; &AE006641_651... 85 5e-15
CP001403_1389(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 83 2e-14
CP001399_1369(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 82 3e-14
CP001400_1282(CP001400|pid:none) Sulfolobus islandicus M.14.25, ... 82 3e-14
AJ844648_1(AJ844648|pid:none) Mus musculus partial mRNA for ribo... 82 4e-14
AY686212_1(AY686212|pid:none) Culicoides sonorensis ribosomal pr... 78 6e-13
(P60846) RecName: Full=50S ribosomal protein L4P; &BX950229_154... 75 5e-12
(A6UQJ1) RecName: Full=50S ribosomal protein L4P; &CP000742_848... 71 6e-11
AB002799_1(AB002799|pid:none) Entamoeba histolytica mRNA for rib... 71 8e-11
DQ158856_101(DQ158856|pid:none) Bigelowiella natans nucleomorph ... 60 7e-10
CP000968_1474(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 63 2e-08
DQ363993_1(DQ363993|pid:none) Saccharum hybrid cultivar putative... 61 8e-08
AX969856_1(AX969856|pid:none) Sequence 659 from Patent EP1104808. 51 6e-05
AX971769_1(AX971769|pid:none) Sequence 2572 from Patent EP1104808. 37 1.2
EU622808_19(EU622808|pid:none) Bacillus phage Nf, complete genome. 36 2.8
CP000230_1268(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 34 8.0
V01438_1(V01438|pid:none) Fragment of Xenopus laevis mRNA for ri... 34 8.0

>AY961533_1(AY961533|pid:none) Lysiphlebus testaceipes ribosomal
protein L4 (RpL4) mRNA, complete cds.
Length = 429

Score = 183 bits (464), Expect(2) = 8e-82
Identities = 93/198 (46%), Positives = 132/198 (66%), Gaps = 4/198 (2%)
Frame = +3

Query: 474 KTKAAVELLKKINAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALR 653
KTK AV L++I A+ DV KV +SK +RAG GK RNRR+ R+GPL++ + +A R
Sbjct: 165 KTKQAVIFLRRIKAWTDVKKVYNSKRLRAGKGKMRNRRHVQRRGPLIIYGQDKGLKKAFR 224

Query: 654 NIPGVEVANVSRLNLLKLAPGGHLGRFIIWTKSAFEQLDSTFGTFAKSSAQKKGYTLPRP 833
NIPGV++ NV+++NLLKLAPGGH+GRF+IWTKSAF++LD+ +GT+ K S KKGY LP P
Sbjct: 225 NIPGVDLMNVNKMNLLKLAPGGHVGRFVIWTKSAFDKLDALYGTWRKESTLKKGYNLPYP 284

Query: 834 MIANADIVRLVNSDEIQXXXXXXXXXXXXPTAPVRRSNPLKNLRAXIKLNPAAVSTRRTQ 1013
+AN D+ R++ S+ I+ V++ NPL N RA +KLNP A T+R
Sbjct: 285 KMANTDLARILKSEAIRKVLRAPRKKV---VRAVKKLNPLNNTRAMLKLNPYAAVTKRAA 341

Query: 1014 V----KSLKSKGIKVSKK 1055
+ K +++ I ++KK
Sbjct: 342 ILNAQKRQQAREIAIAKK 359

Score = 145 bits (366), Expect(2) = 8e-82
Identities = 75/155 (48%), Positives = 92/155 (59%), Gaps = 12/155 (7%)
Frame = +2

Query: 26 TTRPFVQVFDAQNKVVGK-VKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQT 202
T RP V VF +N+ + + LP V PIRPD+VN +H ++KN RQ Y + AG QT
Sbjct: 5 TARPLVTVFTEKNEASKETISLPAVFKAPIRPDIVNTIHVQISKNKRQPYCVSEKAGHQT 64

Query: 203 SAESWGTGRAVARIPRVPGSGTHRS-----------GRMYGPNKTWRRWNRKVNVNQKRY 349
SAESWGTGRAVARIPRV G GTHRS GRM+ P K WRRW+RK+NVNQKRY
Sbjct: 65 SAESWGTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKPWRRWHRKINVNQKRY 124

Query: 350 XXXXXXXXXXXXXXXXXRGHRINGINEVPLVIANE 454
+GH I + E PLV+ ++
Sbjct: 125 ALVSAIAASGVPALVMSKGHMIQDVPEFPLVVEDK 159

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,750,017,397
Number of extensions: 32879452
Number of successful extensions: 90946
Number of sequences better than 10.0: 153
Number of HSP's gapped: 90501
Number of HSP's successfully gapped: 285
Length of query: 370
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 240
Effective length of database: 624,409,729
Effective search space: 149858334960
Effective search space used: 149858334960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.79 gvh: 0.39 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for Contig-U05942-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0