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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05928-1
Contig ID Contig-U05928-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05928-1 (Contig-U05928-1Q) /CSM_Contig/Contig-U05928-1Q.Seq.d
CCACGCGTCCCGATTTTATATCTTTTAATATATATAAAATTTAAAATTAA
AAAATGTTACACCCACAACAAATGCAAGAGCAGCAACAGCAACAACAAGA
AGCTCAAGCTGCATCAATCATACCAGAACATTATGAAATGGAATATATTC
AAAGAAATAATAAAACTGTTTCATTTTGTCAAATTCCAATTTCAATTTTA
GGAGGAGCAATTGCAGGTGTTATTGGATTTTCAGGAGTTTATGGCTTTTT
ATTTTATTTTTTTATATATATTACATTTTGTTCATTATTTACATTAAAAG
AAAACAAAAATTTACATTTATATTTTCCAAATCCAAGATCAATTTGGTTT
GATAGTATTGGTGCAGGTTTAATGCCATATATTTTATTTTGGACATTTTT
ATATAATATAATACATATTTATTAAATTAATTGGGCTCAAAATGTTTTGT
ATATAAATATAAATATAAATAAAATACATCTATACAGTGCGTTTGGTGTA
ATTAAAAAA
Gap no gap
Contig length 509
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3111705
End point 3112197
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U05928
List of clone(s) 

est1=VSH170Z,1,487
est2=VSH170F,13,442
est3=SSM794E,52,510
Translated Amino Acid sequence 
trpdfisfniyki*n*KMLHPQQMQEQQQQQQEAQAASIIPEHYEMEYIQRNNKTVSFCQ
IPISILGGAIAGVIGFSGVYGFLFYFFIYITFCSLFTLKENKNLHLYFPNPRSIWFDSIG
AGLMPYILFWTFLYNIIHIY*inwaqnvlyinininkihlysafgvikk
Translated Amino Acid sequence (All Frames) 
Frame A:
prvpilylliyikfkikkcythnkckssnsnnkklklhqsyqnimkwnifkeiiklfhfv
kfqfqf*eeqlqvlldfqefmafyfiflyilhfvhylh*kktkiyiyifqiqdqfglivl
vqv*chifyfghfyii*yifikliglkmfci*i*i*ikyiytvrlv*lk


Frame B:
hasrfyif*yi*nlklknvtpttnaraatattrssscinhtrtl*ngiyskk**ncfils
nsnfnfrrsncrcywifrslwlfilffyiyyilfiiyikrkqkftfifskskinlv**yw
crfnaiyfildifi*yntylln*lgskcfvykykyk*ntsiqcvwcn*k


Frame C:
trpdfisfniyki*n*KMLHPQQMQEQQQQQQEAQAASIIPEHYEMEYIQRNNKTVSFCQ
IPISILGGAIAGVIGFSGVYGFLFYFFIYITFCSLFTLKENKNLHLYFPNPRSIWFDSIG
AGLMPYILFWTFLYNIIHIY*inwaqnvlyinininkihlysafgvikk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05928-1 (Contig-U05928-1Q)
/CSM_Contig/Contig-U05928-1Q.Seq.d
         (509 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05928-1 (Contig-U05928-1Q) /CSM_Contig/Conti...   486  e-137
Contig-U03062-1 (Contig-U03062-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U11124-1 (Contig-U11124-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U09708-1 (Contig-U09708-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U04043-1 (Contig-U04043-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U03053-1 (Contig-U03053-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U13420-1 (Contig-U13420-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U13195-1 (Contig-U13195-1Q) /CSM_Contig/Conti...    36  0.035

>Contig-U05928-1 (Contig-U05928-1Q) /CSM_Contig/Contig-U05928-1Q.Seq.d
          Length = 509

 Score =  486 bits (245), Expect = e-137
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacgcgtcccgattttatatcttttaatatatataaaatttaaaattaaaaaatgttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccacgcgtcccgattttatatcttttaatatatataaaatttaaaattaaaaaatgttac 60

                                                                       
Query: 61  acccacaacaaatgcaagagcagcaacagcaacaacaagaagctcaagctgcatcaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acccacaacaaatgcaagagcagcaacagcaacaacaagaagctcaagctgcatcaatca 120

                                                                       
Query: 121 taccagaacattatgaaatggaatatattcaaagaaataataaaactgtttcattttgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taccagaacattatgaaatggaatatattcaaagaaataataaaactgtttcattttgtc 180

                                                                       
Query: 181 aaattccaatttcaattttaggaggagcaattgcaggtgttattggattttcaggagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaattccaatttcaattttaggaggagcaattgcaggtgttattggattttcaggagttt 240

                
Query: 241 atggc 245
           |||||
Sbjct: 241 atggc 245


 Score =  220 bits (111), Expect = 1e-57
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                       
Query: 264 atatatattacattttgttcattatttacattaaaagaaaacaaaaatttacatttatat 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atatatattacattttgttcattatttacattaaaagaaaacaaaaatttacatttatat 323

                                                              
Query: 324 tttccaaatccaagatcaatttggtttgatagtattggtgcaggtttaatg 374
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttccaaatccaagatcaatttggtttgatagtattggtgcaggtttaatg 374


 Score = 65.9 bits (33), Expect = 4e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 477 catctatacagtgcgtttggtgtaattaaaaaa 509
           |||||||||||||||||||||||||||||||||
Sbjct: 477 catctatacagtgcgtttggtgtaattaaaaaa 509


 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 423 taaattaattgggctcaaaatgttttg 449
           |||||||||||||||||||||||||||
Sbjct: 423 taaattaattgggctcaaaatgttttg 449


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 26  taatatatataaaa 39
           ||||||||||||||
Sbjct: 273 taatatatataaaa 260


>Contig-U03062-1 (Contig-U03062-1Q) /CSM_Contig/Contig-U03062-1Q.Seq.d
          Length = 752

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 81  cagcaacagcaacaacaagaa 101
           |||||||||||||||||||||
Sbjct: 165 cagcaacagcaacaacaagaa 185


 Score = 30.2 bits (15), Expect = 2.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 84  caacagcaacaacaa 98
           |||||||||||||||
Sbjct: 699 caacagcaacaacaa 713


>Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Contig-U11815-1Q.Seq.d
          Length = 2500

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   caacagcaacaacaagaagctcaa 107
            ||||||||||||||| ||||||||
Sbjct: 2116 caacagcaacaacaacaagctcaa 2139


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 29/34 (85%)
 Strand = Plus / Plus

                                              
Query: 65   acaacaaatgcaagagcagcaacagcaacaacaa 98
            ||||||||||||| | || | ||| |||||||||
Sbjct: 1923 acaacaaatgcaacaacaaccacaacaacaacaa 1956


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,131
Number of Sequences: 6905
Number of extensions: 13131
Number of successful extensions: 2121
Number of sequences better than 10.0: 830
length of query: 509
length of database: 5,674,871
effective HSP length: 16
effective length of query: 493
effective length of database: 5,564,391
effective search space: 2743244763
effective search space used: 2743244763
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 6
Homology vs DNA 
Query= Contig-U05928-1 (Contig-U05928-1Q) /CSM_Contig/Contig-U05928-1Q.Seq.d
         (509 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU267016) Dictyostelium discoideum vegetative cDNA clone:VS...   486   e-150  2
(AU267015) Dictyostelium discoideum vegetative cDNA clone:VS...   462   e-142  2
(C93400) Dictyostelium discoideum slug cDNA, clone SSM794.        385   e-132  3
(BF271806) GA__Eb0012M18f Gossypium arboreum 7-10 dpa fiber ...    40   0.004  2
(AC199913) Zea mays chromosome 2 clone CH201-292F21; ZMMBBc0...    54   0.005  1
(AC199549) Zea mays chromosome 7 clone CH201-298P18; ZMMBBc0...    54   0.005  1
(AC193445) Zea mays chromosome 2 clone CH201-425C6; ZMMBBc04...    54   0.005  1
(AC190910) Zea mays chromosome 2 clone CH201-143G6; ZMMBBc01...    54   0.005  1
(AC183814) Zea mays chromosome 5 clone ZMMBBb-529D19; gnl|WU...    54   0.005  1
(BW572265) Ciona savignyi cDNA, clone:csef009c01, 5'end, sin...    54   0.005  1
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...    42   0.009  5
(CG027201) CHGAP66TR CHGA Cleome hassleriana genomic clone C...    40   0.016  2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   0.027  8
(AC197979) Chlorocebus aethiops clone CH252-392K18, WORKING ...    42   0.073  3
(CS380525) Sequence 79 from Patent WO2006079655.                   50   0.078  1
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    50   0.078  1
(AC208674) Zea mays chromosome 6 clone CH201-507M21; ZMMBBc0...    50   0.078  1
(ED772575) GM_WBb0148D13.r GM_WBb Glycine max genomic clone ...    50   0.078  1
(ED772567) GM_WBb0148D09.r GM_WBb Glycine max genomic clone ...    50   0.078  1
(CL894283) abg25d04.x1 Soybean random, unfiltered genomic li...    50   0.078  1
(ES437132) EST1237338 ESTSYN-L Musa acuminata AAA Group cDNA...    50   0.078  1
(ES437092) EST1237298 ESTSYN-L Musa acuminata AAA Group cDNA...    50   0.078  1
(EL512336) CHTX1063.b1_N02.ab1 CHT(XYZ) Jerusalem artichoke ...    50   0.078  1
(CX611128) ANR1_22_G03.g1_A002 Anaerobic roots Sorghum bicol...    50   0.078  1
(CX611041) ANR1_22_G03.b1_A002 Anaerobic roots Sorghum bicol...    50   0.078  1
(AM054326) Isotricha intestinalis EST, clone Isoi_B10.             50   0.078  1
(CN137158) OX1_55_B11.g1_A002 Oxidatively-stressed leaves an...    50   0.078  1
(CN137075) OX1_55_B11.b1_A002 Oxidatively-stressed leaves an...    50   0.078  1
(CD432025) ETH1_12_E06.g1_A002 Ethylene-treated seedlings So...    50   0.078  1
(BG462997) EM1_46_C07.g1_A002 Embryo 1 (EM1) Sorghum bicolor...    50   0.078  1
(BG462919) EM1_46_C07.b1_A002 Embryo 1 (EM1) Sorghum bicolor...    50   0.078  1
(BF481826) FM1_20_G12.b1_A003 Floral-Induced Meristem 1 (FM1...    50   0.078  1
(BF481662) FM1_20_G12.g1_A003 Floral-Induced Meristem 1 (FM1...    50   0.078  1
(BE365896) PI1_2_G02.b1_A002 Pathogen induced 1 (PI1) Sorghu...    50   0.078  1
(BE361693) DG1_81_F06.g1_A002 Dark Grown 1 (DG1) Sorghum bic...    50   0.078  1
(BE361624) DG1_81_F06.b1_A002 Dark Grown 1 (DG1) Sorghum bic...    50   0.078  1
(BE360606) DG1_64_C03.g1_A002 Dark Grown 1 (DG1) Sorghum bic...    50   0.078  1
(BE360566) DG1_64_C03.b1_A002 Dark Grown 1 (DG1) Sorghum bic...    50   0.078  1
(AC024388) Homo sapiens chromosome 4 clone RP11-115L8 map 4,...    46   0.099  4
(BU549125) GM880018B10F05 Gm-r1088 Glycine max cDNA clone Gm...    46   0.11   2
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    40   0.11   9
(AP009515) Solanum lycopersicum DNA, chromosome 8, clone: C0...    40   0.13   4
(CO983233) GM89018A2F09.r1 Gm-r1089 Glycine max cDNA clone G...    46   0.14   2
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    40   0.14   5
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    34   0.16   6
(AP006372) Lotus japonicus genomic DNA, chromosome 1, clone:...    40   0.16   4
(AC216955) Solanum tuberosum chromosome 6 clone RHPOTKEY174L...    44   0.26   4
(AC188926) Canis Familiaris chromosome 13, clone XX-408G5, c...    46   0.27   3
(AP005251) Oryza sativa Japonica Group genomic DNA, chromoso...    46   0.29   2
(DQ282380) Prunus salicina clone PSX16 microsatellite sequence.    48   0.31   1
(AM467064) Vitis vinifera contig VV78X193621.4, whole genome...    48   0.31   1
(AM447611) Vitis vinifera contig VV78X174034.1, whole genome...    48   0.31   1
(AM444541) Vitis vinifera contig VV78X160268.9, whole genome...    48   0.31   1
(AC204797) Tupaia belangeri clone CH275-372F5, complete sequ...    48   0.31   1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    48   0.31   1
(AC130988) Rattus norvegicus clone CH230-70K12, *** SEQUENCI...    48   0.31   1
(AC128218) Rattus norvegicus clone CH230-490E19, *** SEQUENC...    48   0.31   1
(AC111684) Rattus norvegicus clone CH230-55E6, *** SEQUENCIN...    48   0.31   1
(AC106220) Rattus norvegicus clone CH230-26P13, *** SEQUENCI...    48   0.31   1
(AC099286) Rattus norvegicus clone CH230-217C6, WORKING DRAF...    48   0.31   1
(AC231217) Choloepus hoffmanni clone CH281-70B6, WORKING DRA...    48   0.31   1
(AC231214) Choloepus hoffmanni clone CH281-384B2, WORKING DR...    48   0.31   1
(AC222888) Bos taurus clone CH240-435M15, WORKING DRAFT SEQU...    48   0.31   1
(AC175063) Bos taurus clone CH240-460M12, WORKING DRAFT SEQU...    48   0.31   1
(AC165844) Bos taurus clone CH240-130H17, WORKING DRAFT SEQU...    48   0.31   1
(EJ267113) 1095351022816 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.31   1
(EJ121913) 1092343376734 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.31   1
(CT524058) A BAC library has been constructed from cultivar ...    48   0.31   1
(CT135564) Sus scrofa genomic clone CH242-198D7, genomic sur...    48   0.31   1
(BH793367) ME_MBa0001A11r Manihot esculenta Manihot esculent...    48   0.31   1
(EC688240) JLE00004223 Jakoba libera Company (STANDARD) Jako...    48   0.31   1
(EB557142) AGENCOURT_51185985 D. virilis EST Drosophila viri...    48   0.31   1
(CV542432) RTS_120_C07 Phaseolus vulgaris P- root EST librar...    48   0.31   1
(CF966169) 13189rsiced_2388.y1 Oryza sativa cv. LYP9 trefoil...    48   0.31   1
(BQ405111) GA__Ed0078G04f Gossypium arboreum 7-10 dpa fiber ...    48   0.31   1
(BQ405091) GA__Ed0078E03f Gossypium arboreum 7-10 dpa fiber ...    48   0.31   1
(AC006646) Caenorhabditis elegans clone F58D5, complete sequ...    40   0.36   2
(AC097458) Homo sapiens BAC clone RP11-10N19 from 2, complet...    42   0.38   3
(AL137227) Caenorhabditis elegans Cosmid F58D5.                    40   0.39   2
(AC122034) Mus musculus BAC clone RP24-403M18 from chromosom...    40   0.40   2
(BJ368674) Dictyostelium discoideum cDNA clone:ddc47l17, 5' ...    32   0.40   3
(AC110712) Rattus norvegicus clone CH230-192P16, WORKING DRA...    42   0.48   2
(EK317989) 1095462419616 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.50   2
(DD010735) Diagnosis of known genetic Parameters within the ...    34   0.54   2
(AC193562) Pan troglodytes BAC clone CH251-408K13 from chrom...    44   0.56   4
(AX344556) Sequence 7 from Patent WO0200932.                       34   0.63   2
(AM437835) Vitis vinifera contig VV78X016314.2, whole genome...    40   0.73   3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    36   0.78   5
(FH138508) CHO_OF3687xg16r1.ab1 CHO_OF3 Nicotiana tabacum ge...    40   0.81   2
(CZ287719) cp54b11.f Candida parapsilosis Random Genomic Lib...    36   0.85   2
(CZ173934) MIAA-10E09b.g1 Meloidogyne incognita BAC end sequ...    36   0.86   2
(CZ280486) cp11g01.r Candida parapsilosis Random Genomic Lib...    36   0.86   2
(CZ280485) cp11g01.f Candida parapsilosis Random Genomic Lib...    36   0.86   2
(CC969416) BOIAA38TR BO_1.2_1.4_KB_nuc Brassica oleracea gen...    32   0.87   2
(BJ368172) Dictyostelium discoideum cDNA clone:ddc45g18, 5' ...    34   0.87   2
(BJ366368) Dictyostelium discoideum cDNA clone:ddc38p17, 5' ...    34   0.87   2
(BJ364616) Dictyostelium discoideum cDNA clone:ddc32h10, 5' ...    34   0.87   2
(BJ367985) Dictyostelium discoideum cDNA clone:ddc44g01, 5' ...    34   0.87   2
(BJ334521) Dictyostelium discoideum cDNA clone:dda46b21, 5' ...    34   0.88   2
(AC133650) Mus musculus BAC clone RP23-453B15 from 9, comple...    42   0.88   3

>(AU267016) Dictyostelium discoideum vegetative cDNA clone:VSH170,
           3' end single read.
          Length = 487

 Score =  486 bits (245), Expect(2) = e-150
 Identities = 245/245 (100%)
 Strand = Plus / Plus


Query: 1   ccacgcgtcccgattttatatcttttaatatatataaaatttaaaattaaaaaatgttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccacgcgtcccgattttatatcttttaatatatataaaatttaaaattaaaaaatgttac 60


Query: 61  acccacaacaaatgcaagagcagcaacagcaacaacaagaagctcaagctgcatcaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acccacaacaaatgcaagagcagcaacagcaacaacaagaagctcaagctgcatcaatca 120


Query: 121 taccagaacattatgaaatggaatatattcaaagaaataataaaactgtttcattttgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taccagaacattatgaaatggaatatattcaaagaaataataaaactgtttcattttgtc 180


Query: 181 aaattccaatttcaattttaggaggagcaattgcaggtgttattggattttcaggagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaattccaatttcaattttaggaggagcaattgcaggtgttattggattttcaggagttt 240


Query: 241 atggc 245
           |||||
Sbjct: 241 atggc 245

 Score = 81.8 bits (41), Expect(2) = e-150
 Identities = 41/41 (100%)
 Strand = Plus / Plus


Query: 327 ccaaatccaagatcaatttggtttgatagtattggtgcagg 367
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccaaatccaagatcaatttggtttgatagtattggtgcagg 367

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 507,446,224
Number of extensions: 39443872
Number of successful extensions: 4363902
Number of sequences better than 10.0: 774
Length of query: 509
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 486
Effective length of database: 93,106,754,628
Effective search space: 45249882749208
Effective search space used: 45249882749208
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U05928-1 (Contig-U05928-1Q) /CSM_Contig/Contig-U05928-1Q.Seq.d
         (509 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXH4) RecName: Full=Transmembrane protein 93 homolog;              223   2e-57
BT081852_1(BT081852|pid:none) Rana catesbeiana clone rcat-evr-52...    83   3e-15
(Q3ZCG8) RecName: Full=Transmembrane protein 93;  &BC102336_1(BC...    83   4e-15
(Q9BV81) RecName: Full=Transmembrane protein 93;  &(Q9CQW0) RecN...    82   6e-15
(Q6GLC5) RecName: Full=Transmembrane protein 93;  &BC074574_1(BC...    82   1e-14
BC157738_1(BC157738|pid:none) Xenopus laevis hypothetical protei...    82   1e-14
BT046068_1(BT046068|pid:none) Salmo salar clone ssal-rgf-540-299...    81   2e-14
BT046213_1(BT046213|pid:none) Salmo salar clone ssal-eve-504-037...    80   2e-14
BT078978_1(BT078978|pid:none) Esox lucius clone eluc-evq-504-039...    80   4e-14
AF361850_1(AF361850|pid:none) Arabidopsis thaliana AT5g49540/K6M...    79   5e-14
AE014297_3829(AE014297|pid:none) Drosophila melanogaster chromos...    77   2e-13
BT060966_1(BT060966|pid:none) Zea mays full-length cDNA clone ZM...    77   2e-13
EU967331_1(EU967331|pid:none) Zea mays clone 301584 unknown mRNA...    77   2e-13
BT082812_1(BT082812|pid:none) Anoplopoma fimbria clone afim-evh-...    76   5e-13
AY119134_1(AY119134|pid:none) Drosophila melanogaster RE35789 fu...    75   7e-13
DQ066218_1(DQ066218|pid:none) Ixodes scapularis isolate ISUFL127...    72   6e-12
BT064343_1(BT064343|pid:none) Zea mays full-length cDNA clone ZM...    67   3e-10
BT068615_1(BT068615|pid:none) Zea mays full-length cDNA clone ZM...    66   5e-10
AF036702_9(AF036702|pid:none) Caenorhabditis elegans cosmid F33D...    60   4e-08
AM451964_4(AM451964|pid:none) Vitis vinifera contig VV78X237314....    58   1e-07
AC173289_13(AC173289|pid:none) Medicago truncatula chromosome 2 ...    57   3e-07
CP000594_158(CP000594|pid:none) Ostreococcus lucimarinus CCE9901...    52   6e-06
GN103727_1(GN103727|pid:none) Sequence 8508 from Patent WO200903...    50   2e-05
GN103713_1(GN103713|pid:none) Sequence 8494 from Patent WO200903...    50   4e-05
(O59764) RecName: Full=Uncharacterized membrane protein C1020.11...    49   5e-05
AM502250_354(AM502250|pid:none) Leishmania infantum chromosome 32.     45   0.001
CR380950_234(CR380950|pid:none) Candida glabrata strain CBS138 c...    42   0.008
AM910987_181(AM910987|pid:none) Plasmodium knowlesi strain H chr...    42   0.011
CP001334_75(CP001334|pid:none) Micromonas sp. RCC299 chromosome ...    41   0.014
GN103715_1(GN103715|pid:none) Sequence 8496 from Patent WO200903...    40   0.032
CR382139_794(CR382139|pid:none) Debaryomyces hansenii strain CBS...    39   0.072
CU928166_140(CU928166|pid:none) Kluyveromyces thermotolerans str...    39   0.072
(Q12431) RecName: Full=Uncharacterized protein YLL014W;  &AY5579...    37   0.27
AM920431_999(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    37   0.36
AL844503_133(AL844503|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.36
CU928174_447(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    37   0.36
AP006841_708(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ...    36   0.61
CP000498_330(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    35   0.79
U30933_1(U30933|pid:none) Arbacia punctulata egg peptide, resact...    35   1.4
AI1371(AI1371) multi-drug resistance efflux pump homolog lmo2377...    34   1.8
(A7N6I9) RecName: Full=Protoheme IX farnesyltransferase 2;      ...    34   1.8
CP000826_3341(CP000826|pid:none) Serratia proteamaculans 568, co...    34   2.3
(Q0HDK5) RecName: Full=Protoheme IX farnesyltransferase 1;      ...    34   2.3
(Q0HPV6) RecName: Full=Protoheme IX farnesyltransferase 1;      ...    34   2.3
(A4GGB7) RecName: Full=Photosystem I assembly protein ycf4;  &DQ...    33   3.0
AL035476_14(AL035476|pid:none) Plasmodium falciparum MAL4P3.           33   3.0
AY228758_7(AY228758|pid:none) Paratomella rubra mitochondrion, p...    33   3.0
GN103725_1(GN103725|pid:none) Sequence 8506 from Patent WO200903...    33   3.0
AF288092_35(AF288092|pid:none) Naegleria gruberi mitochondrial D...    33   3.0
CP001175_215(CP001175|pid:none) Listeria monocytogenes HCC23, co...    33   3.9
AG1741(AG1741) multi-drug resistance efflux pump homolog lin2476...    33   3.9
(Q8D6H2) RecName: Full=Protoheme IX farnesyltransferase;        ...    33   5.2
(Q71X09) RecName: Full=Methionine import ATP-binding protein met...    33   5.2
CP001175_178(CP001175|pid:none) Listeria monocytogenes HCC23, co...    33   5.2
AB107919_1(AB107919|pid:none) Pisum sativum PsAUX1 mRNA for AUX1...    33   5.2
(Q7MDC8) RecName: Full=Protoheme IX farnesyltransferase;        ...    32   6.7
CP001229_1621(CP001229|pid:none) Sulfurihydrogenibium azorense A...    32   6.7
(Q9FEL7) RecName: Full=Auxin transporter-like protein 2; AltName...    32   8.8
CP001146_419(CP001146|pid:none) Dictyoglomus thermophilum H-6-12...    32   8.8
(P49132) RecName: Full=Triose phosphate/phosphate translocator, ...    32   8.8
AJ862887_1(AJ862887|pid:none) Prunus avium mRNA for putative aux...    32   8.8
(Q8E8P7) RecName: Full=Protoheme IX farnesyltransferase;        ...    32   8.8
CP000792_514(CP000792|pid:none) Campylobacter concisus 13826, co...    32   8.8

>(Q1ZXH4) RecName: Full=Transmembrane protein 93 homolog;
          Length = 123

 Score =  223 bits (569), Expect = 2e-57
 Identities = 107/123 (86%), Positives = 107/123 (86%)
 Frame = +3

Query: 54  MLHPXXXXXXXXXXXXXXXXSIIPEHYEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFS 233
           MLHP                SIIPEHYEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFS
Sbjct: 1   MLHPQQMQEQQQQQQEAQAASIIPEHYEMEYIQRNNKTVSFCQIPISILGGAIAGVIGFS 60

Query: 234 GVYGFLFYFFIYITFCSLFTLKENKNLHLYFPNPRSIWFDSIGAGLMPYILFWTFLYNII 413
           GVYGFLFYFFIYITFCSLFTLKENKNLHLYFPNPRSIWFDSIGAGLMPYILFWTFLYNII
Sbjct: 61  GVYGFLFYFFIYITFCSLFTLKENKNLHLYFPNPRSIWFDSIGAGLMPYILFWTFLYNII 120

Query: 414 HIY 422
           HIY
Sbjct: 121 HIY 123

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 654,377,426
Number of extensions: 12525778
Number of successful extensions: 31295
Number of sequences better than 10.0: 63
Number of HSP's gapped: 31197
Number of HSP's successfully gapped: 63
Length of query: 169
Length of database: 1,040,966,779
Length adjustment: 119
Effective length of query: 50
Effective length of database: 659,656,864
Effective search space: 32982843200
Effective search space used: 32982843200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.43  gvh: 0.58  alm: 0.28  top: 0.73  tms: 0.13  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U05928-1 is end
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0