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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05900-1
Contig ID Contig-U05900-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05900-1 (Contig-U05900-1Q) /CSM_Contig/Contig-U05900-1Q.Seq.d
AAATAATATCATTTAATTCTTTCTTCCTTTCTTTTTATATATATAACAAA
AAAAAAAAAAAAAATTCTAAACCATAAAATGTTTAAATTAAATTTTAAAA
ATAATTATAAAGTTTTAACACTTTTATTCTCTTTGACTCTTTCAATGTTT
GTTTCAAATGCTCAAGTTTATTACCCAGGCTATTTAAATAATGTATCTAG
TATTTCAACGGTTTCTGCAGATTATTTCCCACTTTTAGTTCACCTCCATT
AACCAATTCTACAACTTATTCTTTTAATGAGGCTATTAATTTACTTGACA
CAGTTACTGATCCAATTTTTAATGCTACTCAAATTCAAGCATTACTTAAT
ACATGGGCCTCAAATGTTAAAGCCGTTATTGGTCTTTCTTTACCAATTTA
TGTTACACAACTCAATAGAATTAATCGTATTGATTTACTCTCAATTCAAA
TGTATACAGAAACCAATAGTGCCTTCATCCTCAGTGCTACAACCTATGCT
CCATTAAAACCACAAGGTGTGTCAATTCTCAACCAAGTTAATGCAATTAA
AGCTTCATTGAATGGTATTACTTTAACAACTACTCAACAAGCTCAATTGA
CTCAATCTCAATTCAATGCTGCAATTTCTAAAATTCAACTTTCTGTCTCA
AATAGCCATTTAATTACTTTTGGTGCTAATGATGTTATTCCATTCAACTC
TGACTCTTTATCTTACATGGAATATATTGCTGATGATATTTTAACATTAG
ATGATGCTATTGATATAATTAAACAAAATAATGTTAGAATTTTAAATTAT
ATTTATGATTTATATTCAACACACAAAACTTTAAGCTTAAATTTTTAAAT
GTAAAAAATATATATAATCCAATAGCGTAATCTTTTATTTTATTTTTTTT
TTATCGAAATTT
Gap no gap
Contig length 912
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3477004
End point 3477915
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05900
List of clone(s) 

est1=SSM614E,1,913
Translated Amino Acid sequence 
iisfnsfflsfyiynkkkkknskp*nv*ikf*k*l*sfntfilfdsfnvcfkcssllprl
fk*ci*YFNGFCRLFPTFSSPPLTNSTTYSFNEAINLLDTVTDPIFNATQIQALLNTWAS
NVKAVIGLSLPIYVTQLNRINRIDLLSIQMYTETNSAFILSATTYAPLKPQGVSILNQVN
AIKASLNGITLTTTQQAQLTQSQFNAAISKIQLSVSNSHLITFGANDVIPFNSDSLSYME
YIADDILTLDDAIDIIKQNNVRILNYIYDLYSTHKTLSLNF*m*kiyiiq*rnllfyfff
iei
Translated Amino Acid sequence (All Frames) 
Frame A:
k*yhlilssflfiyitkkkkkilnhkmfklnfknnykvltllfsltlsmfvsnaqvyypg
ylnnvssistvsadyfpllvhlh*pilqlillmrlliyltqlliqflmllkfkhylihgp
qmlkpllvflyqfmlhnsielivliysqfkciqkpivpsssvlqpmlh*nhkvcqfstkl
mqlklh*mvll*qllnkln*lnlnsmlqflkfnflsqiai*lllvlmmlfhstltlyltw
nillmif*h*mmlli*lnkimlef*iifmiyiqhtkl*a*ifkckkyi*snsvifyfiff
lskf


Frame B:
nnii*fflpfflyi*qkkkkkf*tikcln*ilkiiikf*hfysl*lfqclfqmlkfitqa
i*imylvfqrflqiishf*ftsinqfynlff**gy*ft*hsy*snf*cysnssit*ymgl
kc*srywsfftnlcyttq*n*sy*ftlnsnvyrnq*clhpqcynlcsikttrcvnsqps*
cn*sfiewyyfnnystssidsisiqccnf*nstfclk*pfnyfwc**cysiql*lfilhg
iyc**yfnir*cy*yn*tk*c*nfklyl*fifntqnfklkflnvkniynpia*sfilfff
yrn


Frame C:
iisfnsfflsfyiynkkkkknskp*nv*ikf*k*l*sfntfilfdsfnvcfkcssllprl
fk*ci*YFNGFCRLFPTFSSPPLTNSTTYSFNEAINLLDTVTDPIFNATQIQALLNTWAS
NVKAVIGLSLPIYVTQLNRINRIDLLSIQMYTETNSAFILSATTYAPLKPQGVSILNQVN
AIKASLNGITLTTTQQAQLTQSQFNAAISKIQLSVSNSHLITFGANDVIPFNSDSLSYME
YIADDILTLDDAIDIIKQNNVRILNYIYDLYSTHKTLSLNF*m*kiyiiq*rnllfyfff
iei
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05900-1 (Contig-U05900-1Q)
/CSM_Contig/Contig-U05900-1Q.Seq.d
         (912 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05900-1 (Contig-U05900-1Q) /CSM_Contig/Conti...  1515  0.0
Contig-U12036-1 (Contig-U12036-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U10429-1 (Contig-U10429-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U10091-1 (Contig-U10091-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U09339-1 (Contig-U09339-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U08277-1 (Contig-U08277-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U06918-1 (Contig-U06918-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U01641-1 (Contig-U01641-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U14573-1 (Contig-U14573-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U13222-1 (Contig-U13222-1Q) /CSM_Contig/Conti...    34  0.25

>Contig-U05900-1 (Contig-U05900-1Q) /CSM_Contig/Contig-U05900-1Q.Seq.d
          Length = 912

 Score = 1515 bits (764), Expect = 0.0
 Identities = 764/764 (100%)
 Strand = Plus / Plus

                                                                       
Query: 119 cacttttattctctttgactctttcaatgtttgtttcaaatgctcaagtttattacccag 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cacttttattctctttgactctttcaatgtttgtttcaaatgctcaagtttattacccag 178

                                                                       
Query: 179 gctatttaaataatgtatctagtatttcaacggtttctgcagattatttcccacttttag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gctatttaaataatgtatctagtatttcaacggtttctgcagattatttcccacttttag 238

                                                                       
Query: 239 ttcacctccattaaccaattctacaacttattcttttaatgaggctattaatttacttga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttcacctccattaaccaattctacaacttattcttttaatgaggctattaatttacttga 298

                                                                       
Query: 299 cacagttactgatccaatttttaatgctactcaaattcaagcattacttaatacatgggc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cacagttactgatccaatttttaatgctactcaaattcaagcattacttaatacatgggc 358

                                                                       
Query: 359 ctcaaatgttaaagccgttattggtctttctttaccaatttatgttacacaactcaatag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctcaaatgttaaagccgttattggtctttctttaccaatttatgttacacaactcaatag 418

                                                                       
Query: 419 aattaatcgtattgatttactctcaattcaaatgtatacagaaaccaatagtgccttcat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aattaatcgtattgatttactctcaattcaaatgtatacagaaaccaatagtgccttcat 478

                                                                       
Query: 479 cctcagtgctacaacctatgctccattaaaaccacaaggtgtgtcaattctcaaccaagt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cctcagtgctacaacctatgctccattaaaaccacaaggtgtgtcaattctcaaccaagt 538

                                                                       
Query: 539 taatgcaattaaagcttcattgaatggtattactttaacaactactcaacaagctcaatt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 taatgcaattaaagcttcattgaatggtattactttaacaactactcaacaagctcaatt 598

                                                                       
Query: 599 gactcaatctcaattcaatgctgcaatttctaaaattcaactttctgtctcaaatagcca 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gactcaatctcaattcaatgctgcaatttctaaaattcaactttctgtctcaaatagcca 658

                                                                       
Query: 659 tttaattacttttggtgctaatgatgttattccattcaactctgactctttatcttacat 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tttaattacttttggtgctaatgatgttattccattcaactctgactctttatcttacat 718

                                                                       
Query: 719 ggaatatattgctgatgatattttaacattagatgatgctattgatataattaaacaaaa 778
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ggaatatattgctgatgatattttaacattagatgatgctattgatataattaaacaaaa 778

                                                                       
Query: 779 taatgttagaattttaaattatatttatgatttatattcaacacacaaaactttaagctt 838
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 taatgttagaattttaaattatatttatgatttatattcaacacacaaaactttaagctt 838

                                                       
Query: 839 aaatttttaaatgtaaaaaatatatataatccaatagcgtaatc 882
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aaatttttaaatgtaaaaaatatatataatccaatagcgtaatc 882


 Score = 93.7 bits (47), Expect = 3e-19
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                         
Query: 1  aaataatatcatttaattctttcttcctttctttttatatatataac 47
          |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaataatatcatttaattctttcttcctttctttttatatatataac 47


>Contig-U12036-1 (Contig-U12036-1Q) /CSM_Contig/Contig-U12036-1Q.Seq.d
          Length = 1436

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 788  aattttaaattatatttat 806
            |||||||||||||||||||
Sbjct: 1359 aattttaaattatatttat 1341


>Contig-U10429-1 (Contig-U10429-1Q) /CSM_Contig/Contig-U10429-1Q.Seq.d
          Length = 1072

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 788 aattttaaattatatttat 806
           |||||||||||||||||||
Sbjct: 60  aattttaaattatatttat 42


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,651
Number of Sequences: 6905
Number of extensions: 13651
Number of successful extensions: 1577
Number of sequences better than 10.0: 197
length of query: 912
length of database: 5,674,871
effective HSP length: 16
effective length of query: 896
effective length of database: 5,564,391
effective search space: 4985694336
effective search space used: 4985694336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 6
Homology vs DNA 
Query= Contig-U05900-1 (Contig-U05900-1Q) /CSM_Contig/Contig-U05900-1Q.Seq.d
         (912 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C93315) Dictyostelium discoideum slug cDNA, clone SSM614.        720   0.0    2
(AU074970) Dictyostelium discoideum slug cDNA, clone SSM614.      226   3e-75  2
(AE014835) Plasmodium falciparum 3D7 chromosome 10 section 7...    42   0.007  2
(AU087266) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    42   0.008  2
(CU914508) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    54   0.009  1
(CU570662) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    54   0.009  1
(AC133208) Mus musculus BAC clone RP23-17O6 from chromosome ...    40   0.026  8
(CU463881) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.026  5
(AL954327) Zebrafish DNA sequence from clone DKEY-18H14 in l...    52   0.037  1
(BX890578) Mouse DNA sequence from clone RP23-72P20 on chrom...    52   0.037  1
(AL672069) Mouse DNA sequence from clone RP23-343O22 on chro...    52   0.037  1
(CE153722) tigr-gss-dog-17000371357511 Dog Library Canis lup...    52   0.037  1
(DV443875) CV01011A2H02.f1 CV01-normalized library Manihot e...    52   0.037  1
(DB751511) Apis mellifera head cDNA, RIKEN full-length enric...    52   0.037  1
(DB747823) Apis mellifera head cDNA, RIKEN full-length enric...    52   0.037  1
(BI507978) BB170014B10E08.5 Bee Brain Normalized/Subtracted ...    52   0.037  1
(CU928083) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.047  4
(AC132574) Mus musculus BAC clone RP24-421H8 from 1, complet...    40   0.090  2
(CS789282) Sequence 538 from Patent WO2005031001.                  40   0.099  2
(AC026596) Homo sapiens chromosome 8, clone RP11-380O15, com...    38   0.15   6
(AC192155) Pan troglodytes BAC clone CH251-501D3 from chromo...    50   0.15   1
(AC008540) Homo sapiens chromosome 19 clone CTC-496P20, comp...    50   0.15   1
(AC127819) Rattus norvegicus clone CH230-261I16, *** SEQUENC...    50   0.15   1
(AC107290) Rattus norvegicus clone CH230-130G5, *** SEQUENCI...    50   0.15   1
(CU582952) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.15   1
(AC190433) Cavia porcellus clone CH234-493O16, WORKING DRAFT...    50   0.15   1
(CT113289) Sus scrofa genomic clone PigE-90L14, genomic surv...    50   0.15   1
(EE148590) SiJWD05AAE.tag5_D05_07 Lausanne fire ant library ...    50   0.15   1
(EE142754) SiJWA02BCF2 Lausanne fire ant library Solenopsis ...    50   0.15   1
(EE142663) SiJWF02BCD2 Lausanne fire ant library Solenopsis ...    50   0.15   1
(EE141299) SiJWD10BDH Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE139764) SiJWB10BDG Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE139439) SiJWC10CAE Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE138922) SiJWF02BCD Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE136896) SiJWA09BBB Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE133524) SiJWC07ADX Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE131581) SiJWE06ACT Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE131064) SiJWB08ABQ Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE129350) SiJWE04ACO Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE128434) SiJWH11ACB Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE128125) SiJWB06AAN Lausanne fire ant library Solenopsis i...    50   0.15   1
(EE128103) SiJWE11AAN Lausanne fire ant library Solenopsis i...    50   0.15   1
(CX139018) 1278280 NCCCWA 03RT Oncorhynchus mykiss cDNA clon...    50   0.15   1
(CN809704) 2O5 Suppression subtractive hybridization (SSH) l...    50   0.15   1
(CN809695) 2E1 Suppression subtractive hybridization (SSH) l...    50   0.15   1
(CN809694) 2I24 Suppression subtractive hybridization (SSH) ...    50   0.15   1
(CN809693) 1B14 Suppression subtractive hybridization (SSH) ...    50   0.15   1
(CN809692) 2D5 Suppression subtractive hybridization (SSH) l...    50   0.15   1
(CN809691) 2D8 Suppression subtractive hybridization (SSH) l...    50   0.15   1
(CN809690) A119 Suppression subtractive hybridization (SSH) ...    50   0.15   1
(CB252020) 2F18 Suppression subtractive hybridization (SSH) ...    50   0.15   1
(AL034557) Plasmodium falciparum MAL4P1.                           36   0.15   10
(AL035476) Plasmodium falciparum MAL4P3.                           34   0.16   10
(AC092817) Homo sapiens chromosome 8, clone RP11-240B13, com...    38   0.16   6
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    32   0.17   7
(AC210364) Solanum lycopersicum chromosome 7 clone C07HBa030...    36   0.21   5
(AC107728) Mus musculus clone RP24-153J3, WORKING DRAFT SEQU...    40   0.23   4
(AC093576) Homo sapiens chromosome 1 clone RP11-359C24, comp...    44   0.30   5
(AC123543) Lemur catta clone LB2-212N12, complete sequence.        40   0.31   9
(AM448701) Vitis vinifera contig VV78X026978.7, whole genome...    38   0.37   2
(AM472124) Vitis vinifera contig VV78X116197.34, whole genom...    38   0.38   3
(AM467734) Vitis vinifera contig VV78X210930.2, whole genome...    48   0.50   2
(AC101405) Mus musculus clone RP23-120H2, LOW-PASS SEQUENCE ...    42   0.51   2
(EV419963) 210786795 NGP Nasonia giraulti cDNA clone 175G23 ...    44   0.51   2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.54   11
(BX323064) Zebrafish DNA sequence from clone DKEYP-13D12 in ...    48   0.59   1
(AC145474) Rattus norvegicus chromosome 1 clone RP32-113N8 m...    48   0.59   1
(AC155025) Bos taurus clone CH240-34H17, WORKING DRAFT SEQUE...    48   0.59   1
(AC140116) Rattus norvegicus clone CH230-340D20, WORKING DRA...    48   0.59   1
(AC114051) Rattus norvegicus clone CH230-189N21, WORKING DRA...    48   0.59   1
(AC109022) Rattus norvegicus clone CH230-273A9, *** SEQUENCI...    48   0.59   1
(AP007474) Lotus japonicus genomic DNA, chromosome 5, clone:...    48   0.59   1
(EI321428) GM_WBc0056N20.f GM_WBc Glycine max genomic clone ...    48   0.59   1
(CP000776) Campylobacter hominis ATCC BAA-381, complete genome.    48   0.59   1
(CP000361) Arcobacter butzleri RM4018, complete genome.            48   0.59   1
(AC141707) Apis mellifera clone CH224-56H8, WORKING DRAFT SE...    46   0.69   5
(AL844550) Mouse DNA sequence from clone RP23-277K21 on chro...    38   0.94   4
(AC104103) Mus musculus BAC clone RP24-378I6 from chromosome...    40   0.94   3
(AQ670044) HS_5436_A2_A01_SP6E RPCI-11 Human Male BAC Librar...    42   1.1    2
(BX649426) Zebrafish DNA sequence from clone DKEYP-82D11 in ...    38   1.1    6
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   1.1    11
(AC106113) Rattus norvegicus clone CH230-137P18, *** SEQUENC...    38   1.2    4
(BX248105) Zebrafish DNA sequence from clone CH211-270A9.          42   1.2    6
(BX563242) Glossina morsitans morsitans (Tseatse fly) EST fr...    42   1.3    2
(BU578683) sar60b06.y1 Gm-c1074 Glycine max cDNA clone SOYBE...    40   1.3    2
(AE000783) Borrelia burgdorferi B31, complete genome.              38   1.3    17
(AM479320) Vitis vinifera contig VV78X158688.5, whole genome...    34   1.3    2
(AM459665) Vitis vinifera, whole genome shotgun sequence, co...    36   1.4    2
(AM425984) Vitis vinifera contig VV78X120237.11, whole genom...    36   1.4    2
(CR356233) Zebrafish DNA sequence from clone CH211-262N1 in ...    40   1.4    5
(AL844509) Plasmodium falciparum chromosome 13.                    38   1.5    9
(CR933780) Zebrafish DNA sequence from clone DKEY-60F6 in li...    34   1.5    8
(AL008732) Human DNA sequence from clone RP1-67M12 on chromo...    38   1.5    5
(AC202486) Medicago truncatula clone mth2-176c14, WORKING DR...    40   1.6    5
(FI075271) CHO_OF7352xi03f1.ab1 CHO_OF7 Nicotiana tabacum ge...    32   1.6    2
(EF535155) Simulium limbatum isolate 3 internal transcribed ...    32   1.6    2
(EF535154) Simulium limbatum isolate 2 internal transcribed ...    32   1.6    2
(ET879144) CHO_OF349xk08f1.ab1 CHO_OF Nicotiana tabacum geno...    32   1.6    2
(FC811367) Sr_pASP6_07g01_SP6 S. ratti mixed stage pAMP Stro...    44   1.6    2
(DX421926) BE1076_J11_F IASMA L1 HindIII BAC library Vitis v...    36   1.6    2

>(C93315) Dictyostelium discoideum slug cDNA, clone SSM614.
          Length = 675

 Score =  720 bits (363), Expect(2) = 0.0
 Identities = 363/363 (100%)
 Strand = Plus / Plus


Query: 244 ctccattaaccaattctacaacttattcttttaatgaggctattaatttacttgacacag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctccattaaccaattctacaacttattcttttaatgaggctattaatttacttgacacag 60


Query: 304 ttactgatccaatttttaatgctactcaaattcaagcattacttaatacatgggcctcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttactgatccaatttttaatgctactcaaattcaagcattacttaatacatgggcctcaa 120


Query: 364 atgttaaagccgttattggtctttctttaccaatttatgttacacaactcaatagaatta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgttaaagccgttattggtctttctttaccaatttatgttacacaactcaatagaatta 180


Query: 424 atcgtattgatttactctcaattcaaatgtatacagaaaccaatagtgccttcatcctca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcgtattgatttactctcaattcaaatgtatacagaaaccaatagtgccttcatcctca 240


Query: 484 gtgctacaacctatgctccattaaaaccacaaggtgtgtcaattctcaaccaagttaatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgctacaacctatgctccattaaaaccacaaggtgtgtcaattctcaaccaagttaatg 300


Query: 544 caattaaagcttcattgaatggtattactttaacaactactcaacaagctcaattgactc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caattaaagcttcattgaatggtattactttaacaactactcaacaagctcaattgactc 360


Query: 604 aat 606
           |||
Sbjct: 361 aat 363

 Score =  547 bits (276), Expect(2) = 0.0
 Identities = 276/276 (100%)
 Strand = Plus / Plus


Query: 607 ctcaattcaatgctgcaatttctaaaattcaactttctgtctcaaatagccatttaatta 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctcaattcaatgctgcaatttctaaaattcaactttctgtctcaaatagccatttaatta 417


Query: 667 cttttggtgctaatgatgttattccattcaactctgactctttatcttacatggaatata 726
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cttttggtgctaatgatgttattccattcaactctgactctttatcttacatggaatata 477


Query: 727 ttgctgatgatattttaacattagatgatgctattgatataattaaacaaaataatgtta 786
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttgctgatgatattttaacattagatgatgctattgatataattaaacaaaataatgtta 537


Query: 787 gaattttaaattatatttatgatttatattcaacacacaaaactttaagcttaaattttt 846
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaattttaaattatatttatgatttatattcaacacacaaaactttaagcttaaattttt 597


Query: 847 aaatgtaaaaaatatatataatccaatagcgtaatc 882
           ||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaatgtaaaaaatatatataatccaatagcgtaatc 633

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,144,760,783
Number of extensions: 74994486
Number of successful extensions: 7054720
Number of sequences better than 10.0: 496
Length of query: 912
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 888
Effective length of database: 97,308,875,965
Effective search space: 86410281856920
Effective search space used: 86410281856920
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U05900-1 (Contig-U05900-1Q) /CSM_Contig/Contig-U05900-1Q.Seq.d
         (912 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MX8) RecName: Full=Uncharacterized protein DDB_G0285615; Fla...   321   4e-99
(Q754J8) RecName: Full=U3 small nucleolar RNA-associated protein...    34   5.9

>(Q54MX8) RecName: Full=Uncharacterized protein DDB_G0285615; Flags:
           Precursor;
          Length = 255

 Score =  321 bits (823), Expect(2) = 4e-99
 Identities = 172/202 (85%), Positives = 173/202 (85%)
 Frame = +3

Query: 240 SPPLTNSTTYSFNEAINLLDTVTDPIFNATQIQALLNTWASNVKAVIGLSLPIYVTQLNR 419
           +PPLTNSTTYSFNEAINLLDTVTDPIFNATQIQALLNTWASNVKAVIGLSLPIYVTQLNR
Sbjct: 56  NPPLTNSTTYSFNEAINLLDTVTDPIFNATQIQALLNTWASNVKAVIGLSLPIYVTQLNR 115

Query: 420 INRIDLLSIQMYTETNSAFILSATTYAPLKPQGVSILNQVNAIKASLNGIXXXXXXXXXX 599
           INRIDLLSIQMYTETNSAFILSATTYAPLKPQGVSILNQVNAIKASLNGI
Sbjct: 116 INRIDLLSIQMYTETNSAFILSATTYAPLKPQGVSILNQVNAIKASLNGI--TLTTTQQA 173

Query: 600 XXXXFNAAISKIQLSVSNSHLITFGANDVIPFNSDSLSYMEYXXXXXXXXXXXXXXXKQN 779
               FNAAISKIQLSVSNSHLITFGANDVIPFNSDSLSYMEY               KQN
Sbjct: 174 QLTQFNAAISKIQLSVSNSHLITFGANDVIPFNSDSLSYMEYIADDILTLDDAIDIIKQN 233

Query: 780 NVRILNYIYDLYSTHKTLSLNF 845
           NVRILNYIYDLYSTHKTLSLNF
Sbjct: 234 NVRILNYIYDLYSTHKTLSLNF 255

 Score = 64.7 bits (156), Expect(2) = 4e-99
 Identities = 32/46 (69%), Positives = 32/46 (69%)
 Frame = +1

Query: 91  NFKNNYKXXXXXXXXXXXXXXSNAQVYYPGYLNNVSSISTVSADYF 228
           NFKNNYK              SNAQVYYPGYLNNVSSISTVSADYF
Sbjct: 5   NFKNNYKVLTLLFSLTLSMFVSNAQVYYPGYLNNVSSISTVSADYF 50

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,113,284,317
Number of extensions: 18454084
Number of successful extensions: 33742
Number of sequences better than 10.0: 2
Number of HSP's gapped: 33737
Number of HSP's successfully gapped: 3
Length of query: 304
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 176
Effective length of database: 630,818,299
Effective search space: 111024020624
Effective search space used: 111024020624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.88  gvh: 0.53  alm: 0.42  top: 0.47  tms: 0.00  mit: 0.44  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 36.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U05900-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0