Contig-U05880-1
Contig ID Contig-U05880-1
Contig update 2001. 8.30
Contig sequence
>Contig-U05880-1 (Contig-U05880-1Q) /CSM_Contig/Contig-U05880-1Q.Seq.d
CTATAATTAAATAATAGATTTACAAAAATATGAATGCAGAATTATTTCAA
TTTCCAAATAATAAAAAAAATTTAAAAAGAGCTCATGATGACAGTGATGA
AGCCTTTTTCAATAAAAAGAATGATAATAGTTTAAAAGAATTCAGAACTG
ATGTTGTTTTTCAAGATTTTCAAGTAAACAATTATAATTATAATTTTAAT
CAAACTCAACAAAACTTTTATTCAATGGGTAGCATCCAAAGCCACACACC
AAGTATTGTAGTTCCAAATCCATCAATTTCAAAGCCTCCACAACTAATAA
ATCAAAATAATATTAACATTCAATCATCAATTCCAAATATTAATATAACT
AGTAATATTAACCAAAACAATTTAAACGTTTTAAATAGAAACCCAAAAAA
TTGTTTAAATCATTTTTTTTGAAAATAAAAAAAAATTAAAAAATTAAAAA
TTAAAAAATAAAATAAAATAAATTTAATTAATAAATCAA

Gap no gap
Contig length 489
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3601994
End point 3602483
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05880
List of clone(s)

est1=SSM448E,1,490
Translated Amino Acid sequence
iik**IYKNMNAELFQFPNNKKNLKRAHDDSDEAFFNKKNDNSLKEFRTDVVFQDFQVNN
YNYNFNQTQQNFYSMGSIQSHTPSIVVPNPSISKPPQLINQNNINIQSSIPNINITSNIN
QNNLNVLNRNPKNCLNHFF*k*kkikklkikk*nkinlinks


Translated Amino Acid sequence (All Frames)
Frame A:
l*lnnrftki*mqnyfnfqiikki*kelmmtvmkpfsikrmiiv*knselmlffkifk*t
iiiiiliklnktfiqwvaskathqvl*fqihqfqslhn**ikiiltfnhqfqili*lvil
tkti*tf*ietqkiv*iiffenkkklkn*klknkik*i*linq


Frame B:
yn*iidlqkyecriisisk**kkfkkss**q**slfq*ke***fkriqn*ccfsrfsskq
l*l*f*snstkllfng*hpkphtkycssksinfkasttnksk*y*hsiinsky*yn**y*
pkqfkrfk*kpkklfksfflkikkn*kikn*kik*nkfn**i


Frame C:
iik**IYKNMNAELFQFPNNKKNLKRAHDDSDEAFFNKKNDNSLKEFRTDVVFQDFQVNN
YNYNFNQTQQNFYSMGSIQSHTPSIVVPNPSISKPPQLINQNNINIQSSIPNINITSNIN
QNNLNVLNRNPKNCLNHFF*k*kkikklkikk*nkinlinks


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05880-1 (Contig-U05880-1Q)
/CSM_Contig/Contig-U05880-1Q.Seq.d
(489 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05880-1 (Contig-U05880-1Q) /CSM_Contig/Conti... 733 0.0
Contig-U01762-1 (Contig-U01762-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U00326-1 (Contig-U00326-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U14146-1 (Contig-U14146-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U11791-1 (Contig-U11791-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U06587-1 (Contig-U06587-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U01836-1 (Contig-U01836-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U01375-1 (Contig-U01375-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U14547-1 (Contig-U14547-1Q) /CSM_Contig/Conti... 36 0.034
Contig-U13269-1 (Contig-U13269-1Q) /CSM_Contig/Conti... 36 0.034

>Contig-U05880-1 (Contig-U05880-1Q) /CSM_Contig/Contig-U05880-1Q.Seq.d
Length = 489

Score = 733 bits (370), Expect = 0.0
Identities = 386/394 (97%)
Strand = Plus / Plus


Query: 1 ctataattaaataatagatttacaaaaatatgaatgcagaattatttcaatttccaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctataattaaataatagatttacaaaaatatgaatgcagaattatttcaatttccaaata 60


Query: 61 atnnnnnnnntttaaaaagagctcatgatgacagtgatgaagcctttttcaataaaaaga 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataaaaaaaatttaaaaagagctcatgatgacagtgatgaagcctttttcaataaaaaga 120


Query: 121 atgataatagtttaaaagaattcagaactgatgttgtttttcaagattttcaagtaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgataatagtttaaaagaattcagaactgatgttgtttttcaagattttcaagtaaaca 180


Query: 181 attataattataattttaatcaaactcaacaaaacttttattcaatgggtagcatccaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attataattataattttaatcaaactcaacaaaacttttattcaatgggtagcatccaaa 240


Query: 241 gccacacaccaagtattgtagttccaaatccatcaatttcaaagcctccacaactaataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gccacacaccaagtattgtagttccaaatccatcaatttcaaagcctccacaactaataa 300


Query: 301 atcaaaataatattaacattcaatcatcaattccaaatattaatataactagtaatatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcaaaataatattaacattcaatcatcaattccaaatattaatataactagtaatatta 360


Query: 361 accaaaacaatttaaacgttttaaatagaaaccc 394
||||||||||||||||||||||||||||||||||
Sbjct: 361 accaaaacaatttaaacgttttaaatagaaaccc 394


Score = 32.2 bits (16), Expect = 0.53
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 180 aattataattataatt 195
||||||||||||||||
Sbjct: 195 aattataattataatt 180


>Contig-U01762-1 (Contig-U01762-1Q) /CSM_Contig/Contig-U01762-1Q.Seq.d
Length = 1278

Score = 40.1 bits (20), Expect = 0.002
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 111 aataaaaagaatgataatagttta 134
|||||||| |||||||||||||||
Sbjct: 885 aataaaaataatgataatagttta 908


>Contig-U00326-1 (Contig-U00326-1Q) /CSM_Contig/Contig-U00326-1Q.Seq.d
Length = 799

Score = 40.1 bits (20), Expect = 0.002
Identities = 29/32 (90%)
Strand = Plus / Plus


Query: 306 aataatattaacattcaatcatcaattccaaa 337
||||||||| | | ||||||||||||||||||
Sbjct: 664 aataatattgataatcaatcatcaattccaaa 695


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,148
Number of Sequences: 6905
Number of extensions: 10148
Number of successful extensions: 1346
Number of sequences better than 10.0: 422
length of query: 489
length of database: 5,674,871
effective HSP length: 16
effective length of query: 473
effective length of database: 5,564,391
effective search space: 2631956943
effective search space used: 2631956943
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 6
Homology vs DNA
Query= Contig-U05880-1 (Contig-U05880-1Q) /CSM_Contig/Contig-U05880-1Q.Seq.d
(489 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU039149) Dictyostelium discoideum slug cDNA, clone SSM448. 595 0.0 2
(BJ371178) Dictyostelium discoideum cDNA clone:ddc57a03, 5' ... 335 e-118 2
(BJ386044) Dictyostelium discoideum cDNA clone:ddc57a03, 3' ... 307 e-114 3
(AC180864) Strongylocentrotus purpuratus clone R3-3026A24, W... 40 0.023 6
(AC094623) Rattus norvegicus clone CH230-5D1, *** SEQUENCING... 36 0.048 4
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.050 10
(AC095145) Rattus norvegicus clone CH230-8G22, *** SEQUENCIN... 36 0.050 4
(EI915900) VUH2-47L18TR VUUBBa (VUH2) Vigna unguiculata geno... 50 0.074 1
(EI915351) VUH2-47M17TR VUUBBa (VUH2) Vigna unguiculata geno... 50 0.074 1
(EK381388) 1095469462748 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.12 3
(AC006216) Arabidopsis thaliana chromosome 1 BAC F5F19 seque... 42 0.12 5
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 36 0.16 5
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 36 0.17 5
(DV783330) HW_LIVER_53_B08 Bos taurus CF-24-HW liver cDNA li... 44 0.22 2
(AP010324) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.29 1
(AP010323) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.29 1
(AP009762) Lotus japonicus genomic DNA, clone: LjT01K02, TM1... 48 0.29 1
(AP009675) Lotus japonicus genomic DNA, chromosome 2, clone:... 48 0.29 1
(AP009633) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.29 1
(AP007925) Lotus japonicus genomic DNA, chromosome 2, clone:... 48 0.29 1
(AP006374) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1
(AM437847) Vitis vinifera contig VV78X202548.7, whole genome... 48 0.29 1
(AC206115) Saccoglossus kowalevskii BAC CUGI_SK_BA 001B6 (S... 48 0.29 1
(AC079944) Homo sapiens 3 BAC RP11-435F17 (Roswell Park Canc... 48 0.29 1
(AC107298) Homo sapiens chromosome 3 clone RP11-318C12, WORK... 48 0.29 1
(AP010446) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1
(AP010078) Lotus japonicus genomic DNA, clone: LjT33M20, TM0... 48 0.29 1
(AP009868) Lotus japonicus genomic DNA, clone: LjB06N21, BM2... 48 0.29 1
(AP008180) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1
(AP008178) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1
(AP008107) Lotus japonicus genomic DNA, chromosome 6, clone:... 48 0.29 1
(AP008081) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.29 1
(AP007949) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.29 1
(AP007859) Lotus japonicus genomic DNA, chromosome 6, clone:... 48 0.29 1
(AP007847) Lotus japonicus genomic DNA, chromosome 6, clone:... 48 0.29 1
(AP007731) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1
(AP007718) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.29 1
(AP007628) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.29 1
(AP007512) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.29 1
(AC023963) Homo sapiens chromosome 3 clone RP11-802F22 map 3... 48 0.29 1
(AC011022) Homo sapiens clone RP11-318C12, WORKING DRAFT SEQ... 48 0.29 1
(FH515716) CHO_OF4711xi21f2.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.29 1
(FH469773) CHO_OF4966xo18f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.29 1
(EH016795) USDA-FP_189260 Lysiphlebus testaceipes adult whol... 48 0.29 1
(CR931740) Medicago truncatula chromosome 5 clone mth2-67g10... 34 0.33 5
(EC824337) SME00005893 esmbsro2 Sawyeria marylandensis cDNA,... 38 0.35 3
(AC172865) Brassica rapa subsp. pekinensis clone KBrH001D17,... 42 0.37 6
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 40 0.39 6
(AC178724) Strongylocentrotus purpuratus clone R3-12O10, WOR... 36 0.44 6
(ET102377) QM0AAB20CF09FM1 CCER1 Citrus clementina genomic c... 38 0.48 2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 38 0.52 11
(CU302332) Medicago truncatula chromosome 5 clone mth2-139e1... 40 0.57 5
(AC022433) Homo sapiens chromosome 5 clone CTD-3066J14, comp... 36 0.62 6
(AC073928) Homo sapiens BAC clone RP11-745P9 from 2, complet... 34 0.77 5
(BX897736) Zebrafish DNA sequence from clone CH211-181B15 in... 38 0.82 5
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 0.85 7
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 1.0 6
(BX294377) Zebrafish DNA sequence from clone DKEY-21K19 in l... 42 1.0 3
(BW335338) Ciona intestinalis cDNA, clone:cidg850k18, 5'end,... 38 1.1 2
(AC146161) Pan troglodytes BAC clone RP43-1G6 from chromosom... 46 1.2 1
(AC073903) Homo sapiens BAC clone RP11-564F5 from 7, complet... 46 1.2 1
(AC027785) Homo sapiens clone RP11-175K20, WORKING DRAFT SEQ... 46 1.2 1
(EK477197) 1095469490746 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.2 1
(AM617619) Entamoeba invadens IP1 GSS, clone inv099e12.q1k. 46 1.2 1
(EJ169534) 1092344078262 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.2 1
(EJ152042) 1092343771362 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.2 1
(DE167776) Bombyx mori genomic DNA, Fosmid clone:RO0315-E06_F. 46 1.2 1
(CT542136) A BAC library has been constructed from cultivar ... 46 1.2 1
(CG925878) MBEFD31TF mth2 Medicago truncatula genomic clone ... 46 1.2 1
(EE143162) SiJWA05BCN2 Lausanne fire ant library Solenopsis ... 46 1.2 1
(EE140981) SiJWA05BCN Lausanne fire ant library Solenopsis i... 46 1.2 1
(DN621678) UCRCA01_01A15_r Bark of Madame Vinous Sweet Orang... 34 1.3 2
(EY803709) CR05-C3-702-025-A03-CT.F Mandarin fruit, developm... 34 1.3 2
(AP004894) Lotus japonicus genomic DNA, chromosome 5, clone:... 42 1.4 4
(CW258291) 104_724_11227797_116_35162_093 Sorghum methylatio... 38 1.4 2
(AC224773) Bos taurus clone CH240-476O16, WORKING DRAFT SEQU... 40 1.4 5
(ES586494) Hm_pwAE2_28E01_M13rev Amplicon Express mixed pupa... 42 1.6 2
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 1.6 8
(FD775965) Zfi03b_31_F01_C018.g1 Second Zamia male gametophy... 40 1.6 2
(CX071267) UCRCS08_20G05_g Parent Washington Navel Orange Ca... 34 1.7 2
(EG433295) AYAFG71TH pooled cDNA populations Arabidopsis tha... 34 1.8 2
(CX071266) UCRCS08_20G05_b Parent Washington Navel Orange Ca... 34 1.9 2
(CP000029) Staphylococcus epidermidis RP62A, complete genome. 44 1.9 14
(EG433300) AYAFG77TH pooled cDNA populations Arabidopsis tha... 34 1.9 2
(AL844507) Plasmodium falciparum chromosome 8. 34 2.0 2
(AC215628) Populus trichocarpa clone POP027-K15, complete se... 34 2.2 5
(CS086347) Sequence 52 from Patent WO2005042786. 42 2.2 3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 38 2.2 8
(AX344616) Sequence 41 from Patent WO0200927. 34 2.3 3
(AC213087) Populus trichocarpa clone POP084-F17, complete se... 34 2.4 2
(CF764200) CES004349 Bos taurus skin cDNA library Bos taurus... 40 2.5 2
(CS086348) Sequence 53 from Patent WO2005042786. 42 2.6 3
(AP010644) Lotus japonicus genomic DNA, chromosome 2, clone:... 36 2.7 5
(AY773865) Arabidopsis thaliana clone pENTR221-At2g38630 hyp... 34 2.7 2
(AC006925) Homo sapiens chromosome 17, clone hRPK.81_I_9, co... 38 2.7 4
(AY301620) Bombyx mandarina from China mitochondrial DNA, co... 36 2.8 4
(AF001550) Homo sapiens chromosome 16 BAC clone CIT987SK-334... 42 2.8 3
(CT963110) Medicago truncatula chromosome 5 clone mth2-64f16... 36 2.8 4
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 3.0 8
(AP009670) Lotus japonicus genomic DNA, chromosome 6, clone:... 34 3.0 4

>(AU039149) Dictyostelium discoideum slug cDNA, clone SSM448.
Length = 490

Score = 595 bits (300), Expect(2) = 0.0
Identities = 300/300 (100%)
Strand = Plus / Plus


Query: 71 tttaaaaagagctcatgatgacagtgatgaagcctttttcaataaaaagaatgataatag 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tttaaaaagagctcatgatgacagtgatgaagcctttttcaataaaaagaatgataatag 130


Query: 131 tttaaaagaattcagaactgatgttgtttttcaagattttcaagtaaacaattataatta 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tttaaaagaattcagaactgatgttgtttttcaagattttcaagtaaacaattataatta 190


Query: 191 taattttaatcaaactcaacaaaacttttattcaatgggtagcatccaaagccacacacc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 taattttaatcaaactcaacaaaacttttattcaatgggtagcatccaaagccacacacc 250


Query: 251 aagtattgtagttccaaatccatcaatttcaaagcctccacaactaataaatcaaaataa 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagtattgtagttccaaatccatcaatttcaaagcctccacaactaataaatcaaaataa 310


Query: 311 tattaacattcaatcatcaattccaaatattaatataactagtaatattaaccaaaacaa 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tattaacattcaatcatcaattccaaatattaatataactagtaatattaaccaaaacaa 370

Score = 123 bits (62), Expect(2) = 0.0
Identities = 62/62 (100%)
Strand = Plus / Plus


Query: 1 ctataattaaataatagatttacaaaaatatgaatgcagaattatttcaatttccaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctataattaaataatagatttacaaaaatatgaatgcagaattatttcaatttccaaata 60


Query: 61 at 62
||
Sbjct: 61 at 62

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 579,764,703
Number of extensions: 40316914
Number of successful extensions: 3841021
Number of sequences better than 10.0: 221
Length of query: 489
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 466
Effective length of database: 93,106,754,628
Effective search space: 43387747656648
Effective search space used: 43387747656648
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 6.20
Homology vs Protein
Query= Contig-U05880-1 (Contig-U05880-1Q) /CSM_Contig/Contig-U05880-1Q.Seq.d
(489 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE014187_748(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 33 4.6
AL031745_34(AL031745|pid:none) Plasmodium falciparum DNA from MA... 33 4.6
AL844501_43(AL844501|pid:none) Plasmodium falciparum strain 3D7,... 33 4.6
AL844506_103(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 32 7.8

>AE014187_748(AE014187|pid:none) Plasmodium falciparum 3D7
chromosome 14, complete sequence.
&AE014828_42(AE014828|pid:none)
Length = 770

Score = 32.7 bits (73), Expect = 4.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3

Query: 24 KNMNAELFQFPNNKKNLKRAHDDSDEAFFNKKNDNSLKEFRTD 152
KN+N L + N K N + +++++ FFNKK DN L D
Sbjct: 215 KNININLEE-ENEKNNCNNSRNNNNKEFFNKKEDNKLVSLSYD 256

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 420,780,906
Number of extensions: 5353153
Number of successful extensions: 16361
Number of sequences better than 10.0: 4
Number of HSP's gapped: 16339
Number of HSP's successfully gapped: 4
Length of query: 163
Length of database: 1,040,966,779
Length adjustment: 118
Effective length of query: 45
Effective length of database: 662,861,149
Effective search space: 29828751705
Effective search space used: 29828751705
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.62 gvh: 0.16 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for Contig-U05880-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0