Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U05880-1 (Contig-U05880-1Q) /CSM_Contig/Contig-U05880-1Q.Seq.d (489 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU039149) Dictyostelium discoideum slug cDNA, clone SSM448. 595 0.0 2 (BJ371178) Dictyostelium discoideum cDNA clone:ddc57a03, 5' ... 335 e-118 2 (BJ386044) Dictyostelium discoideum cDNA clone:ddc57a03, 3' ... 307 e-114 3 (AC180864) Strongylocentrotus purpuratus clone R3-3026A24, W... 40 0.023 6 (AC094623) Rattus norvegicus clone CH230-5D1, *** SEQUENCING... 36 0.048 4 (AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.050 10 (AC095145) Rattus norvegicus clone CH230-8G22, *** SEQUENCIN... 36 0.050 4 (EI915900) VUH2-47L18TR VUUBBa (VUH2) Vigna unguiculata geno... 50 0.074 1 (EI915351) VUH2-47M17TR VUUBBa (VUH2) Vigna unguiculata geno... 50 0.074 1 (EK381388) 1095469462748 Global-Ocean-Sampling_GS-31-01-01-1... 34 0.12 3 (AC006216) Arabidopsis thaliana chromosome 1 BAC F5F19 seque... 42 0.12 5 (AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 36 0.16 5 (EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 36 0.17 5 (DV783330) HW_LIVER_53_B08 Bos taurus CF-24-HW liver cDNA li... 44 0.22 2 (AP010324) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.29 1 (AP010323) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.29 1 (AP009762) Lotus japonicus genomic DNA, clone: LjT01K02, TM1... 48 0.29 1 (AP009675) Lotus japonicus genomic DNA, chromosome 2, clone:... 48 0.29 1 (AP009633) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.29 1 (AP007925) Lotus japonicus genomic DNA, chromosome 2, clone:... 48 0.29 1 (AP006374) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1 (AM437847) Vitis vinifera contig VV78X202548.7, whole genome... 48 0.29 1 (AC206115) Saccoglossus kowalevskii BAC CUGI_SK_BA 001B6 (S... 48 0.29 1 (AC079944) Homo sapiens 3 BAC RP11-435F17 (Roswell Park Canc... 48 0.29 1 (AC107298) Homo sapiens chromosome 3 clone RP11-318C12, WORK... 48 0.29 1 (AP010446) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1 (AP010078) Lotus japonicus genomic DNA, clone: LjT33M20, TM0... 48 0.29 1 (AP009868) Lotus japonicus genomic DNA, clone: LjB06N21, BM2... 48 0.29 1 (AP008180) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1 (AP008178) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1 (AP008107) Lotus japonicus genomic DNA, chromosome 6, clone:... 48 0.29 1 (AP008081) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.29 1 (AP007949) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.29 1 (AP007859) Lotus japonicus genomic DNA, chromosome 6, clone:... 48 0.29 1 (AP007847) Lotus japonicus genomic DNA, chromosome 6, clone:... 48 0.29 1 (AP007731) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.29 1 (AP007718) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.29 1 (AP007628) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.29 1 (AP007512) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.29 1 (AC023963) Homo sapiens chromosome 3 clone RP11-802F22 map 3... 48 0.29 1 (AC011022) Homo sapiens clone RP11-318C12, WORKING DRAFT SEQ... 48 0.29 1 (FH515716) CHO_OF4711xi21f2.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.29 1 (FH469773) CHO_OF4966xo18f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.29 1 (EH016795) USDA-FP_189260 Lysiphlebus testaceipes adult whol... 48 0.29 1 (CR931740) Medicago truncatula chromosome 5 clone mth2-67g10... 34 0.33 5 (EC824337) SME00005893 esmbsro2 Sawyeria marylandensis cDNA,... 38 0.35 3 (AC172865) Brassica rapa subsp. pekinensis clone KBrH001D17,... 42 0.37 6 (AC117080) Dictyostelium discoideum chromosome 2 map complem... 40 0.39 6 (AC178724) Strongylocentrotus purpuratus clone R3-12O10, WOR... 36 0.44 6 (ET102377) QM0AAB20CF09FM1 CCER1 Citrus clementina genomic c... 38 0.48 2 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 38 0.52 11 (CU302332) Medicago truncatula chromosome 5 clone mth2-139e1... 40 0.57 5 (AC022433) Homo sapiens chromosome 5 clone CTD-3066J14, comp... 36 0.62 6 (AC073928) Homo sapiens BAC clone RP11-745P9 from 2, complet... 34 0.77 5 (BX897736) Zebrafish DNA sequence from clone CH211-181B15 in... 38 0.82 5 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 0.85 7 (AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 1.0 6 (BX294377) Zebrafish DNA sequence from clone DKEY-21K19 in l... 42 1.0 3 (BW335338) Ciona intestinalis cDNA, clone:cidg850k18, 5'end,... 38 1.1 2 (AC146161) Pan troglodytes BAC clone RP43-1G6 from chromosom... 46 1.2 1 (AC073903) Homo sapiens BAC clone RP11-564F5 from 7, complet... 46 1.2 1 (AC027785) Homo sapiens clone RP11-175K20, WORKING DRAFT SEQ... 46 1.2 1 (EK477197) 1095469490746 Global-Ocean-Sampling_GS-32-01-01-1... 46 1.2 1 (AM617619) Entamoeba invadens IP1 GSS, clone inv099e12.q1k. 46 1.2 1 (EJ169534) 1092344078262 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.2 1 (EJ152042) 1092343771362 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.2 1 (DE167776) Bombyx mori genomic DNA, Fosmid clone:RO0315-E06_F. 46 1.2 1 (CT542136) A BAC library has been constructed from cultivar ... 46 1.2 1 (CG925878) MBEFD31TF mth2 Medicago truncatula genomic clone ... 46 1.2 1 (EE143162) SiJWA05BCN2 Lausanne fire ant library Solenopsis ... 46 1.2 1 (EE140981) SiJWA05BCN Lausanne fire ant library Solenopsis i... 46 1.2 1 (DN621678) UCRCA01_01A15_r Bark of Madame Vinous Sweet Orang... 34 1.3 2 (EY803709) CR05-C3-702-025-A03-CT.F Mandarin fruit, developm... 34 1.3 2 (AP004894) Lotus japonicus genomic DNA, chromosome 5, clone:... 42 1.4 4 (CW258291) 104_724_11227797_116_35162_093 Sorghum methylatio... 38 1.4 2 (AC224773) Bos taurus clone CH240-476O16, WORKING DRAFT SEQU... 40 1.4 5 (ES586494) Hm_pwAE2_28E01_M13rev Amplicon Express mixed pupa... 42 1.6 2 (AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 1.6 8 (FD775965) Zfi03b_31_F01_C018.g1 Second Zamia male gametophy... 40 1.6 2 (CX071267) UCRCS08_20G05_g Parent Washington Navel Orange Ca... 34 1.7 2 (EG433295) AYAFG71TH pooled cDNA populations Arabidopsis tha... 34 1.8 2 (CX071266) UCRCS08_20G05_b Parent Washington Navel Orange Ca... 34 1.9 2 (CP000029) Staphylococcus epidermidis RP62A, complete genome. 44 1.9 14 (EG433300) AYAFG77TH pooled cDNA populations Arabidopsis tha... 34 1.9 2 (AL844507) Plasmodium falciparum chromosome 8. 34 2.0 2 (AC215628) Populus trichocarpa clone POP027-K15, complete se... 34 2.2 5 (CS086347) Sequence 52 from Patent WO2005042786. 42 2.2 3 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 38 2.2 8 (AX344616) Sequence 41 from Patent WO0200927. 34 2.3 3 (AC213087) Populus trichocarpa clone POP084-F17, complete se... 34 2.4 2 (CF764200) CES004349 Bos taurus skin cDNA library Bos taurus... 40 2.5 2 (CS086348) Sequence 53 from Patent WO2005042786. 42 2.6 3 (AP010644) Lotus japonicus genomic DNA, chromosome 2, clone:... 36 2.7 5 (AY773865) Arabidopsis thaliana clone pENTR221-At2g38630 hyp... 34 2.7 2 (AC006925) Homo sapiens chromosome 17, clone hRPK.81_I_9, co... 38 2.7 4 (AY301620) Bombyx mandarina from China mitochondrial DNA, co... 36 2.8 4 (AF001550) Homo sapiens chromosome 16 BAC clone CIT987SK-334... 42 2.8 3 (CT963110) Medicago truncatula chromosome 5 clone mth2-64f16... 36 2.8 4 (AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 3.0 8 (AP009670) Lotus japonicus genomic DNA, chromosome 6, clone:... 34 3.0 4
>(AU039149) Dictyostelium discoideum slug cDNA, clone SSM448. Length = 490
Score = 595 bits (300), Expect(2) = 0.0 Identities = 300/300 (100%) Strand = Plus / Plus
Query: 71 tttaaaaagagctcatgatgacagtgatgaagcctttttcaataaaaagaatgataatag 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 tttaaaaagagctcatgatgacagtgatgaagcctttttcaataaaaagaatgataatag 130
Query: 131 tttaaaagaattcagaactgatgttgtttttcaagattttcaagtaaacaattataatta 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 tttaaaagaattcagaactgatgttgtttttcaagattttcaagtaaacaattataatta 190
Query: 191 taattttaatcaaactcaacaaaacttttattcaatgggtagcatccaaagccacacacc 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 taattttaatcaaactcaacaaaacttttattcaatgggtagcatccaaagccacacacc 250
Query: 251 aagtattgtagttccaaatccatcaatttcaaagcctccacaactaataaatcaaaataa 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 aagtattgtagttccaaatccatcaatttcaaagcctccacaactaataaatcaaaataa 310
Query: 311 tattaacattcaatcatcaattccaaatattaatataactagtaatattaaccaaaacaa 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 tattaacattcaatcatcaattccaaatattaatataactagtaatattaaccaaaacaa 370
Score = 123 bits (62), Expect(2) = 0.0 Identities = 62/62 (100%) Strand = Plus / Plus
Query: 1 ctataattaaataatagatttacaaaaatatgaatgcagaattatttcaatttccaaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ctataattaaataatagatttacaaaaatatgaatgcagaattatttcaatttccaaata 60
Query: 61 at 62 || Sbjct: 61 at 62
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 579,764,703 Number of extensions: 40316914 Number of successful extensions: 3841021 Number of sequences better than 10.0: 221 Length of query: 489 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 466 Effective length of database: 93,106,754,628 Effective search space: 43387747656648 Effective search space used: 43387747656648 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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