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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05867-1
Contig ID Contig-U05867-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05867-1 (Contig-U05867-1Q) /CSM_Contig/Contig-U05867-1Q.Seq.d
GGAAAAATGAGGCTCATTTATTATAGATAACTTTATATGCTTTTTATATA
GGTCGTATCTTCTACTACCACAAACAAAATTTAATTGAAAAAAATATGAA
ATTTTAAAAAAAACTAAATGAAATCCAATTTAAATTTCATTTTTTCTCAA
AAAAAAAATTTTTTTTTTTTTTTGGCAAGAGAAAAACTAATTTTTTTAAA
TCTACTTAAAATAAAAAATATTTATGGTATTCTTGGTTAAATAAGAACTT
TTAAAAAATTAAAAAAAAAAAAAAAAGTTTAATAAATAAAAAAAATAATT
ATAAAAAGTATTGGTCAAAATTTTTTGGATTTATTTTAAAAGAAAAAAGA
AAAAAATCTATGTTATTAATTATTCCAACTAAAAGTTATTAGGTTTCAAT
AATTTTTGGGAAAAAAAAAAAAAGAAATTATTTAAAAAAAAAATTAACAA
TTCAAATTCCCAAGTGGATTTTGAGTTGTTGGGATAATATAAAATATATA
TATGTAAAAAACTGAAAGTGAACTTCCCATTCATGAGTCT
Gap no gap
Contig length 540
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1733293
End point 1732753
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05867
List of clone(s) 

est1=SSM367E,1,541
Translated Amino Acid sequence 
kneahll*itlyafyigrifyyhkqnlieknmkf*kklneiqfkfhffskkkfffffgkr
ktnffkst*nkkylwyswlnknf*KIKKKKKSLINKKNNYKKYWSKFFGFILKEKRKKSM
LLIIPTKSY*vsiifgkkkkrnylkkkltiqipkwilscwdnikyiyvkn*k*tshs*v
Translated Amino Acid sequence (All Frames) 
Frame A:
gkmrliyyr*lymlfi*vvsstttnki*lkki*nfkkn*mksnlnfifsqkknfffflar
ekliflnllkikniygilg*irtfkklkkkkkv**ikkiiiksigqnfldlf*kkkeknl
cy*lfqlkvirfq*flgkkkkeii*kkn*qfkfpsgf*vvgii*niym*kteselpihes


Frame B:
ek*gsfiidnficflyrsylllpqtkfn*kkyeilkktk*npi*isfflkkkiffffwqe
kn*ff*iylk*kifmvflvk*ellkn*kkkkkfnk*kk*l*kvlvkifwiyfkrkkkkiy
vinysn*kllgfnnfwekkkkklfkkkinnsnsqvdfellg*ykiyickklkvnfpfms


Frame C:
kneahll*itlyafyigrifyyhkqnlieknmkf*kklneiqfkfhffskkkfffffgkr
ktnffkst*nkkylwyswlnknf*KIKKKKKSLINKKNNYKKYWSKFFGFILKEKRKKSM
LLIIPTKSY*vsiifgkkkkrnylkkkltiqipkwilscwdnikyiyvkn*k*tshs*v
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05867-1 (Contig-U05867-1Q)
/CSM_Contig/Contig-U05867-1Q.Seq.d
         (540 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05867-1 (Contig-U05867-1Q) /CSM_Contig/Conti...   192  3e-49
Contig-U09147-1 (Contig-U09147-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11534-1 (Contig-U11534-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U06865-1 (Contig-U06865-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U05496-1 (Contig-U05496-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U03567-1 (Contig-U03567-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U13300-1 (Contig-U13300-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11708-1 (Contig-U11708-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12516-1 (Contig-U12516-1Q) /CSM_Contig/Conti...    30  2.3

>Contig-U05867-1 (Contig-U05867-1Q) /CSM_Contig/Contig-U05867-1Q.Seq.d
          Length = 540

 Score =  192 bits (97), Expect = 3e-49
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                       
Query: 444 ttaacaattcaaattcccaagtggattttgagttgttgggataatataaaatatatatat 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaacaattcaaattcccaagtggattttgagttgttgggataatataaaatatatatat 503

                                                
Query: 504 gtaaaaaactgaaagtgaacttcccattcatgagtct 540
           |||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaaaaaactgaaagtgaacttcccattcatgagtct 540


 Score =  139 bits (70), Expect = 3e-33
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggaaaaatgaggctcatttattatagataactttatatgctttttatataggtcgtatct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaaaaatgaggctcatttattatagataactttatatgctttttatataggtcgtatct 60

                    
Query: 61 tctactacca 70
          ||||||||||
Sbjct: 61 tctactacca 70


 Score =  115 bits (58), Expect = 5e-26
 Identities = 72/79 (91%)
 Strand = Plus / Plus

                                                                       
Query: 174 ggcaagagaaaaactaannnnnnnaaatctacttaaaataaaaaatatttatggtattct 233
           |||||||||||||||||       ||||||||||||||||||||||||||||||||||||
Sbjct: 174 ggcaagagaaaaactaatttttttaaatctacttaaaataaaaaatatttatggtattct 233

                              
Query: 234 tggttaaataagaactttt 252
           |||||||||||||||||||
Sbjct: 234 tggttaaataagaactttt 252


 Score =  107 bits (54), Expect = 1e-23
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 357 tctatgttattaattattccaactaaaagttattaggtttcaataatttttggg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctatgttattaattattccaactaaaagttattaggtttcaataatttttggg 410


 Score = 83.8 bits (42), Expect = 2e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                     
Query: 296 taattataaaaagtattggtcaaaattttttggatttatttt 337
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 taattataaaaagtattggtcaaaattttttggatttatttt 337


 Score = 50.1 bits (25), Expect = 2e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 124 tccaatttaaatttcattttttctc 148
           |||||||||||||||||||||||||
Sbjct: 124 tccaatttaaatttcattttttctc 148


>Contig-U09147-1 (Contig-U09147-1Q) /CSM_Contig/Contig-U09147-1Q.Seq.d
          Length = 1159

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 207  taaaataaaaaatatttat 225
            |||||||||||||||||||
Sbjct: 1113 taaaataaaaaatatttat 1131


>Contig-U11534-1 (Contig-U11534-1Q) /CSM_Contig/Contig-U11534-1Q.Seq.d
          Length = 1418

 Score = 36.2 bits (18), Expect = 0.038
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 206 ttaaaataaaaaatattt 223
           ||||||||||||||||||
Sbjct: 58  ttaaaataaaaaatattt 41


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,810
Number of Sequences: 6905
Number of extensions: 10810
Number of successful extensions: 1495
Number of sequences better than 10.0: 379
length of query: 540
length of database: 5,674,871
effective HSP length: 16
effective length of query: 524
effective length of database: 5,564,391
effective search space: 2915740884
effective search space used: 2915740884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 6
Homology vs DNA 
Query= Contig-U05867-1 (Contig-U05867-1Q) /CSM_Contig/Contig-U05867-1Q.Seq.d
         (540 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039085) Dictyostelium discoideum slug cDNA, clone SSM367.      192   e-108  4
(BX571809) Zebrafish DNA sequence from clone CH211-222G23 in...    48   0.33   1
(FH335965) CHO_OF4273xd24f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.33   1
(CZ529702) SRAA-aac62f09.b1 Strongyloides ratti whole genome...    48   0.33   1
(BF617318) HVSMEc0015K09f Hordeum vulgare seedling shoot EST...    48   0.33   1
(AP001655) Homo sapiens genomic DNA, chromosome 18q21 clone:...    44   0.34   3
(AC010341) Homo sapiens chromosome 5 clone CTD-2010O7, WORKI...    44   0.45   2
(BX323462) Zebrafish DNA sequence from clone CH211-225F16 in...    46   0.83   2
(CU041344) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.99   2
(CU466285) Zebrafish DNA sequence from clone CH73-17K20 in l...    46   1.3    1
(CU406336) Zebrafish DNA sequence from clone DKEY-83F6.            46   1.3    1
(CU041398) Zebrafish DNA sequence from clone CH73-31J14 in l...    46   1.3    1
(CT737163) Zebrafish DNA sequence from clone DKEYP-3G2 in li...    46   1.3    1
(CT027654) Zebrafish DNA sequence from clone DKEY-264N17 in ...    46   1.3    1
(CR790373) Zebrafish DNA sequence from clone CH211-180B7 in ...    46   1.3    1
(BX936415) Zebrafish DNA sequence from clone CH211-242N18 in...    46   1.3    1
(BX901908) Zebrafish DNA sequence from clone DKEY-268B12 in ...    46   1.3    1
(BX649481) Zebrafish DNA sequence from clone CH211-103D13 in...    46   1.3    1
(BX640576) Zebrafish DNA sequence from clone DKEY-15H8 in li...    46   1.3    1
(BX571762) Zebrafish DNA sequence from clone CH211-214G1 in ...    46   1.3    1
(BX571758) Zebrafish DNA sequence from clone CH211-34K1 in l...    46   1.3    1
(BX284669) Zebrafish DNA sequence from clone CH211-280E18 in...    46   1.3    1
(AL954657) Zebrafish DNA sequence from clone CH211-223E21 in...    46   1.3    1
(AL929447) Mouse DNA sequence from clone RP23-360O17 on chro...    46   1.3    1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    46   1.3    1
(AP003453) Oryza sativa Japonica Group genomic DNA, chromoso...    46   1.3    1
(AC229739) Oryza minuta clone OM__Ba0238N02, complete sequence.    46   1.3    1
(EA699908) Sequence 78787 from patent US 7365185.                  46   1.3    1
(EA699891) Sequence 78770 from patent US 7365185.                  46   1.3    1
(AC191901) Sorex araneus clone SA_Ba-197L18, complete sequence.    46   1.3    1
(AC175804) Sorex araneus clone SA_Ba-385M9, complete sequence.     46   1.3    1
(AL117356) Human chromosome 14 DNA sequence BAC R-606A16 of ...    46   1.3    1
(AC098827) Homo sapiens BAC clone RP11-640B6 from 4, complet...    46   1.3    1
(CU915613) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(CU326350) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(CT027769) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.3    1
(CR759809) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(AP001944) Homo sapiens genomic DNA, chromosome 4q22-q24, cl...    46   1.3    1
(AL844507) Plasmodium falciparum chromosome 8.                     46   1.3    1
(AL844506) Plasmodium falciparum chromosome  7.                    46   1.3    1
(AF523316) Canis familiaris chromosome X clone RP81-291M9 ma...    46   1.3    1
(AC213145) Oryza officinalis clone OO__Ba0100C01, *** SEQUEN...    46   1.3    1
(AC196600) Myotis lucifugus clone CH235-94H11, WORKING DRAFT...    46   1.3    1
(AC178643) Strongylocentrotus purpuratus clone R3-11E3, WORK...    46   1.3    1
(AC177016) Strongylocentrotus purpuratus clone R3-37H23, WOR...    46   1.3    1
(AC176092) Strongylocentrotus purpuratus clone R3-24C18, WOR...    46   1.3    1
(AC172387) Strongylocentrotus purpuratus clone R3-1004H13, W...    46   1.3    1
(FH340367) CHO_OF4605xb23f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.3    1
(ET859081) CHO_OF161xj22f1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.3    1
(BX223373) Danio rerio genomic clone DKEY-52K21, genomic sur...    46   1.3    1
(EB439804) KN6B.104I11F.060103T7 KN6B Nicotiana tabacum cDNA...    46   1.3    1
(EB384620) nbd28g04.y1 Rabbit lens. Unnormalized (nbd) Oryct...    46   1.3    1
(EB384619) nbd28g04.x1 Rabbit lens. Unnormalized (nbd) Oryct...    46   1.3    1
(CX131814) AGENCOURT_39798602 NICHD_XGC_Te2N Xenopus laevis ...    46   1.3    1
(EY258517) BF01021A2B04.f1 Normalized subtracted keck librar...    46   1.3    1
(AC079240) Homo sapiens BAC clone RP11-808H17 from 4, comple...    36   1.7    4
(AC171839) Bos taurus clone CH240-214N3, WORKING DRAFT SEQUE...    44   1.9    2
(AG293550) Mus musculus molossinus DNA, clone:MSMg01-069D23....    40   2.0    2
(AB025608) Arabidopsis thaliana genomic DNA, chromosome 3, T...    40   2.1    4
(AC114845) Rattus norvegicus clone CH230-97O22, *** SEQUENCI...    40   2.3    5
(AC171798) Bos taurus clone CH240-60L3, WORKING DRAFT SEQUEN...    40   2.3    2
(AC110614) Homo sapiens BAC clone RP11-453D22 from 2, comple...    34   2.5    2
(AL359552) Human DNA sequence from clone RP11-363D24 on chro...    34   2.6    2
(AC019183) Homo sapiens BAC clone RP11-291G24 from 18, compl...    36   2.8    5
(AQ261509) CITBI-E1-2509D6.TR CITBI-E1 Homo sapiens genomic ...    38   4.0    2
(AC187048) Zea mays chromosome 6 clone ZMMBBb-288L23; ZMMBBb...    38   4.1    2
(CR352249) Zebrafish DNA sequence from clone DKEY-97O18 in l...    44   5.1    1
(BX548049) Zebrafish DNA sequence from clone DKEY-217J16 in ...    44   5.1    1
(G86602) S208P6382FD4.T0 129S1/SvImJ Mus musculus STS genomi...    44   5.1    1
(BV438300) S237P6320FD8.T0 PortugueseWaterDog Canis familiar...    44   5.1    1
(CT030637) Mouse DNA sequence from clone RP23-123H11 on chro...    44   5.1    1
(BC100643) Rattus norvegicus nucleobindin 1, mRNA (cDNA clon...    44   5.1    1
(AL935124) Mouse DNA sequence from clone RP23-88C15 on chrom...    44   5.1    1
(AC154316) Mus musculus BAC clone RP23-338D3 from chromosome...    44   5.1    1
(AC134473) Mus musculus BAC clone RP23-190G18 from chromosom...    44   5.1    1
(AC131729) Mus musculus BAC clone RP23-125B15 from 5, comple...    44   5.1    1
(AC123934) Mus musculus BAC clone RP23-354D22 from chromosom...    44   5.1    1
(AC115055) Mus musculus chromosome 3, clone RP24-346I12, com...    44   5.1    1
(AC109612) Mus musculus strain C57BL/6J clone rp23-37i3 map ...    44   5.1    1
(AC146662) Callithrix jacchus clone CH259-329B2, complete se...    44   5.1    1
(EF533700) Glycine max clone BAC GM_WBb080D08, complete sequ...    44   5.1    1
(CT836954) Oryza sativa (indica cultivar-group) cDNA clone:O...    44   5.1    1
(CR382130) Yarrowia lipolytica chromosome D of strain CLIB12...    44   5.1    1
(AY116483) Silene californica chloroplast tRNA-Leu (trnL) ge...    44   5.1    1
(AM440189) Vitis vinifera contig VV78X080456.27, whole genom...    44   5.1    1
(AC214463) Solanum lycopersicum chromosome 9 clone C09HBa008...    44   5.1    1
(AX344624) Sequence 49 from Patent WO0200927.                      44   5.1    1
(AY634203) Drosophila simulans strain Papeete isolate 3 412 ...    44   5.1    1
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    44   5.1    1
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    44   5.1    1
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    44   5.1    1
(AY616754) Homo sapiens biliverdin reductase A (BLVRA) gene,...    44   5.1    1
(AL096773) Human DNA sequence from clone RP5-1000E10 on chro...    44   5.1    1
(AC132152) Homo sapiens BAC clone CTD-2014D7 from 2, complet...    44   5.1    1
(AC100850) Homo sapiens chromosome 8, clone RP11-235P11, com...    44   5.1    1
(AC093917) Homo sapiens BAC clone RP11-800K23 from 4, comple...    44   5.1    1
(AC008005) Homo sapiens chromosome 8, clone RP11-44L18, comp...    44   5.1    1
(AC006203) Homo sapiens chromosome 18, clone hRPK.453_M_1, c...    44   5.1    1
(AC005189) Homo sapiens PAC clone RP5-905J8 from 7p11.2-p21,...    44   5.1    1
(AC150663) Bos taurus clone CH240-243F15, WORKING DRAFT SEQU...    44   5.1    1

>(AU039085) Dictyostelium discoideum slug cDNA, clone SSM367.
          Length = 541

 Score =  192 bits (97), Expect(4) = e-108
 Identities = 97/97 (100%)
 Strand = Plus / Plus


Query: 444 ttaacaattcaaattcccaagtggattttgagttgttgggataatataaaatatatatat 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaacaattcaaattcccaagtggattttgagttgttgggataatataaaatatatatat 503


Query: 504 gtaaaaaactgaaagtgaacttcccattcatgagtct 540
           |||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtaaaaaactgaaagtgaacttcccattcatgagtct 540

 Score =  141 bits (71), Expect(4) = e-108
 Identities = 71/71 (100%)
 Strand = Plus / Plus


Query: 1  ggaaaaatgaggctcatttattatagataactttatatgctttttatataggtcgtatct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaaaaatgaggctcatttattatagataactttatatgctttttatataggtcgtatct 60


Query: 61 tctactaccac 71
          |||||||||||
Sbjct: 61 tctactaccac 71

 Score =  107 bits (54), Expect(4) = e-108
 Identities = 54/54 (100%)
 Strand = Plus / Plus


Query: 357 tctatgttattaattattccaactaaaagttattaggtttcaataatttttggg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctatgttattaattattccaactaaaagttattaggtttcaataatttttggg 410

 Score = 34.2 bits (17), Expect(4) = e-108
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 174 ggcaagagaaaaactaa 190
           |||||||||||||||||
Sbjct: 174 ggcaagagaaaaactaa 190

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 354,089,758
Number of extensions: 24049641
Number of successful extensions: 2949311
Number of sequences better than 10.0: 208
Length of query: 540
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 517
Effective length of database: 93,106,754,628
Effective search space: 48136192142676
Effective search space used: 48136192142676
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U05867-1 (Contig-U05867-1Q) /CSM_Contig/Contig-U05867-1Q.Seq.d
         (540 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000882_68(CP000882|pid:none) Hemiselmis andersenii chromosome ...    32   8.0

>CP000882_68(CP000882|pid:none) Hemiselmis andersenii chromosome 2,
           complete sequence; nucleomorph.
          Length = 609

 Score = 32.3 bits (72), Expect = 8.0
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
 Frame = -1

Query: 186 FFSCQKKKKIFFLRKNEI*IGFHLVFFKISYFFQ------LNFVCGSRRYDL------YK 43
           FFS +KKKK F   KNE+ I F   FF + + F       LN +   + Y +       K
Sbjct: 479 FFSKKKKKKFFLCGKNEVKISFFKFFF-VKFIFSNGIKSFLNLILRKKSYRIRNFIENSK 537

Query: 42  KHIKLS 25
           K +K+S
Sbjct: 538 KILKIS 543

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 498,013,236
Number of extensions: 7383708
Number of successful extensions: 10776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10775
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 60
Effective length of database: 656,452,579
Effective search space: 39387154740
Effective search space used: 39387154740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.49  gvh: 0.09  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.45  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for Contig-U05867-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0