Contig-U05836-1
Contig ID Contig-U05836-1
Contig update 2002. 9.13
Contig sequence
>Contig-U05836-1 (Contig-U05836-1Q) /CSM_Contig/Contig-U05836-1Q.Seq.d
CGGACGCGTGGGGTGCGCTATGTTCACAAAATATGCAACATCCTTGTTTG
GAGAAATATCTCACACCAATTAATGAACTTTATGGTTTTATAAAGGTTAA
AGCTTTGAATAGGCTATCATTATTTGGTGTTGAGAAAGATGTAGACTTTG
ATGATCCTCTCTCAAAGTGGTATAATAATAAAGAAGGTTATGTTATGGAT
AGATTCTCTTACTTTATGTGTTTCAAATGTAAGAAACCCTATTTTGGTGG
TGAAAAGGTTTGTGCAATTGCTGACGAAAATAGAATTGCTGGTGAGCATA
AACCTGAAGAATTGGTTTGTGGAGGTTGTAGTTCAAGTGGTAATGAAAAT
TGTAAAATCCATGGAAAAGAGTTTATAGAGTACAAATGTAAATATTGTTG
TCGTATCTCTGCTTTCTTTTGTTGGGGTAACTCTCATTTCTGTGTTGAAT
GTCATAGAAATGTAAATCATGTTGCGCAAATCCCAAAAACTCAATTACCT
CAATGTAAGTGTGAAGGAAGTGAAAAACATATTTCTGGTGAAGAATTTTG
TTATGGATGTTCAATGTGTAAAATAATTAGTAATAGTGAATAATCATAAT
TTATTTTTATTATTTATTATTTATTATTAAACATATCAAAATAAAAATAA
ATAAAAAAAAAATTTTGTTATTTGCAAAAATTAAAAAAAAAAAA

Gap no gap
Contig length 694
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4853067
End point 4852385
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05836
List of clone(s)

est1=SSM115E,1,695
Translated Amino Acid sequence
DAWGALCSQNMQHPCLEKYLTPINELYGFIKVKALNRLSLFGVEKDVDFDDPLSKWYNNK
EGYVMDRFSYFMCFKCKKPYFGGEKVCAIADENRIAGEHKPEELVCGGCSSSGNENCKIH
GKEFIEYKCKYCCRISAFFCWGNSHFCVECHRNVNHVAQIPKTQLPQCKCEGSEKHISGE
EFCYGCSMCKIISNSE*s*fifiiyylllnisk*k*ikkkfcylqklkkk


Translated Amino Acid sequence (All Frames)
Frame A:
rtrgvryvhkicnilvwrnishqlmnfmvl*rlkl*igyhylvlrkm*tlmilsqsgiii
kkvmlwidsltlcvsnvrnpilvvkrfvqlltkiellvsinlknwfvevvvqvvmkivks
meksl*stnvnivvvsllsfvgvtlisvlnviem*imlrksqklnylnvsvkevkniflv
knfvmdvqcvk*lvivnnhnlfllfiiyy*tyqnknk*kknfvickn*kkk


Frame B:
grvgcamftkyatslfgeishtn**tlwfykg*sfe*aiiiwc*ercrl**sslkvv***
rrlcyg*illlyvfqm*etlfww*kglcnc*rk*ncw*a*t*riglwrl*fkw**kl*np
wkrvyrvqm*illsylcflllg*lsflc*ms*kcksccanpknsitsm*v*rk*ktyfw*
rillwmfnv*nn****iiiiyfyyllfiikhikikinkkkillfakikkkk


Frame C:
DAWGALCSQNMQHPCLEKYLTPINELYGFIKVKALNRLSLFGVEKDVDFDDPLSKWYNNK
EGYVMDRFSYFMCFKCKKPYFGGEKVCAIADENRIAGEHKPEELVCGGCSSSGNENCKIH
GKEFIEYKCKYCCRISAFFCWGNSHFCVECHRNVNHVAQIPKTQLPQCKCEGSEKHISGE
EFCYGCSMCKIISNSE*s*fifiiyylllnisk*k*ikkkfcylqklkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05836-1 (Contig-U05836-1Q)
/CSM_Contig/Contig-U05836-1Q.Seq.d
(694 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05836-1 (Contig-U05836-1Q) /CSM_Contig/Conti... 1185 0.0
Contig-U11242-1 (Contig-U11242-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U10164-1 (Contig-U10164-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U05842-1 (Contig-U05842-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U04856-1 (Contig-U04856-1Q) /CSM_Contig/Conti... 34 0.19
Contig-U12683-1 (Contig-U12683-1Q) /CSM_Contig/Conti... 32 0.76
Contig-U12067-1 (Contig-U12067-1Q) /CSM_Contig/Conti... 32 0.76
Contig-U11672-1 (Contig-U11672-1Q) /CSM_Contig/Conti... 32 0.76
Contig-U09343-1 (Contig-U09343-1Q) /CSM_Contig/Conti... 32 0.76

>Contig-U05836-1 (Contig-U05836-1Q) /CSM_Contig/Contig-U05836-1Q.Seq.d
Length = 694

Score = 1185 bits (598), Expect = 0.0
Identities = 598/598 (100%)
Strand = Plus / Plus


Query: 1 cggacgcgtggggtgcgctatgttcacaaaatatgcaacatccttgtttggagaaatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggacgcgtggggtgcgctatgttcacaaaatatgcaacatccttgtttggagaaatatc 60


Query: 61 tcacaccaattaatgaactttatggttttataaaggttaaagctttgaataggctatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcacaccaattaatgaactttatggttttataaaggttaaagctttgaataggctatcat 120


Query: 121 tatttggtgttgagaaagatgtagactttgatgatcctctctcaaagtggtataataata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatttggtgttgagaaagatgtagactttgatgatcctctctcaaagtggtataataata 180


Query: 181 aagaaggttatgttatggatagattctcttactttatgtgtttcaaatgtaagaaaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaaggttatgttatggatagattctcttactttatgtgtttcaaatgtaagaaaccct 240


Query: 241 attttggtggtgaaaaggtttgtgcaattgctgacgaaaatagaattgctggtgagcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attttggtggtgaaaaggtttgtgcaattgctgacgaaaatagaattgctggtgagcata 300


Query: 301 aacctgaagaattggtttgtggaggttgtagttcaagtggtaatgaaaattgtaaaatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacctgaagaattggtttgtggaggttgtagttcaagtggtaatgaaaattgtaaaatcc 360


Query: 361 atggaaaagagtttatagagtacaaatgtaaatattgttgtcgtatctctgctttctttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggaaaagagtttatagagtacaaatgtaaatattgttgtcgtatctctgctttctttt 420


Query: 421 gttggggtaactctcatttctgtgttgaatgtcatagaaatgtaaatcatgttgcgcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttggggtaactctcatttctgtgttgaatgtcatagaaatgtaaatcatgttgcgcaaa 480


Query: 481 tcccaaaaactcaattacctcaatgtaagtgtgaaggaagtgaaaaacatatttctggtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcccaaaaactcaattacctcaatgtaagtgtgaaggaagtgaaaaacatatttctggtg 540


Query: 541 aagaattttgttatggatgttcaatgtgtaaaataattagtaatagtgaataatcata 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aagaattttgttatggatgttcaatgtgtaaaataattagtaatagtgaataatcata 598


>Contig-U11242-1 (Contig-U11242-1Q) /CSM_Contig/Contig-U11242-1Q.Seq.d
Length = 1925

Score = 38.2 bits (19), Expect = 0.012
Identities = 25/27 (92%)
Strand = Plus / Plus


Query: 303 cctgaagaattggtttgtggaggttgt 329
|||||||||||| ||||||| ||||||
Sbjct: 1575 cctgaagaattgatttgtggtggttgt 1601


Score = 34.2 bits (17), Expect = 0.19
Identities = 29/33 (87%)
Strand = Plus / Plus


Query: 219 tgtttcaaatgtaagaaaccctattttggtggt 251
|||||||||||||| |||| ||||| ||||||
Sbjct: 1497 tgtttcaaatgtaaacaaccttatttcggtggt 1529


>Contig-U10164-1 (Contig-U10164-1Q) /CSM_Contig/Contig-U10164-1Q.Seq.d
Length = 1480

Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 384 aaatgtaaatattgttgtc 402
|||||||||||||||||||
Sbjct: 735 aaatgtaaatattgttgtc 753


Score = 30.2 bits (15), Expect = 3.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 67 caattaatgaacttt 81
|||||||||||||||
Sbjct: 73 caattaatgaacttt 87


Score = 30.2 bits (15), Expect = 3.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 460 atgtaaatcatgttg 474
|||||||||||||||
Sbjct: 200 atgtaaatcatgttg 214


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7571
Number of Sequences: 6905
Number of extensions: 7571
Number of successful extensions: 610
Number of sequences better than 10.0: 55
length of query: 694
length of database: 5,674,871
effective HSP length: 16
effective length of query: 678
effective length of database: 5,564,391
effective search space: 3772657098
effective search space used: 3772657098
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 6
Homology vs DNA
Query= Contig-U05836-1 (Contig-U05836-1Q) /CSM_Contig/Contig-U05836-1Q.Seq.d
(694 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU038897) Dictyostelium discoideum slug cDNA, clone SSM115. 1076 0.0 1
(AU074805) Dictyostelium discoideum slug cDNA, clone SSM115. 476 e-130 1
(BJ357082) Dictyostelium discoideum cDNA clone:dda62l07, 3' ... 38 0.20 2
(BJ351667) Dictyostelium discoideum cDNA clone:dda44a09, 3' ... 38 0.21 2
(BJ349280) Dictyostelium discoideum cDNA clone:dda36a06, 3' ... 38 0.27 2
(BJ446430) Dictyostelium discoideum cDNA clone:ddv62o15, 3' ... 38 0.27 2
(BX936381) Zebrafish DNA sequence from clone CH211-152H14 in... 36 0.71 4
(ED974693) OA_CBa0174K03.f OA_CBa Oryza australiensis genomi... 42 0.84 2
(BH579723) BOGFE16TF BOGF Brassica oleracea genomic clone BO... 36 1.0 2
(DR145619) 49092812 Drosophila pseudoobscura embryonic cDNA ... 36 1.4 2
(DR145716) 49086853 Drosophila pseudoobscura embryonic cDNA ... 36 1.4 2
(AC072045) Homo sapiens 3 BAC RP11-77D13 (Roswell Park Cance... 46 1.7 1
(EC272321) TT1BV65TV Tetrahymena thermophila SB210 cDNA libr... 46 1.7 1
(EC269132) TT1CU52TV Tetrahymena thermophila SB210 cDNA libr... 46 1.7 1
(DY679177) TT1AY36TV Tetrahymena thermophila EST library str... 46 1.7 1
(DY677419) TT1AS07TV Tetrahymena thermophila EST library str... 46 1.7 1
(CX579703) TTE00023680 Amplicon Express - Conjugative Form T... 46 1.7 1
(CT786661) Paramecium tetraurelia 5-PRIME EST from clone LK0... 46 1.7 1
(EV841001) TT1E709TV Tetrahymena thermophila SB210 cDNA libr... 46 1.7 1
(EV839780) TT1DZ88TV Tetrahymena thermophila SB210 cDNA libr... 46 1.7 1
(EV837125) TT1DU96TV Tetrahymena thermophila SB210 cDNA libr... 46 1.7 1
(AC195598) Zea mays chromosome 6 clone CH201-253H2; ZMMBBc02... 40 3.1 3
(CS561404) Sequence 48 from Patent WO2006032472. 40 4.2 3
(CS544114) Sequence 48 from Patent WO2006032475. 40 4.2 3
(CS536762) Sequence 48 from Patent WO2006032500. 40 4.2 3
(EA072968) Sequence 326 from patent US 7183083. 40 4.8 3
(DI167092) Immunogenic Compositions of Staphylococcus Epider... 40 4.8 3
(CS586312) Sequence 64 from Patent WO2007001423. 40 4.8 3
(AR886665) Sequence 326 from patent US 7060458. 40 4.8 3
(DT980460) CLJ188-H02.x1d-t SHGC-CLJ Gasterosteus aculeatus ... 42 5.4 2
(DN714565) CNB103-D03.x1d-t SHGC-CNB Gasterosteus aculeatus ... 42 6.3 2
(AM456900) Vitis vinifera contig VV78X246941.13, whole genom... 44 6.9 1
(AC216790) Macaca mulatta chromosome UNKNOWN clone CH250-293... 44 6.9 1
(AC215789) Macaca mulatta chromosome UNKNOWN clone CH250-25P... 44 6.9 1
(FM199431) Triticum aestivum GSS, clone frba001f006i19k0.abd. 44 6.9 1
(ED018684) BAMBOO_06_55_G07.b1 Anji moso shotgun library Phy... 44 6.9 1
(CG910762) ZMMBBb0350O04.f ZMMBBb Zea mays subsp. mays genom... 44 6.9 1
(DY616845) AC2465 NOLLY Medicago truncatula cDNA 5', mRNA se... 44 6.9 1
(DT269934) JGI_CAAV3216.rev CAAV Pimephales promelas testis ... 44 6.9 1
(DT182136) JGI_ANNO48859.rev ANNO Pimephales promelas Whole ... 44 6.9 1
(DT166776) JGI_ANNO39938.rev ANNO Pimephales promelas Whole ... 44 6.9 1
(DT153685) JGI_ANNO31924.rev ANNO Pimephales promelas Whole ... 44 6.9 1
(DT123330) JGI_ANNO8286.rev ANNO Pimephales promelas Whole (... 44 6.9 1
(FD773720) Zfi02b_121_G08_C017.b1 cDNA library derived from ... 44 6.9 1
(CP000771) Fervidobacterium nodosum Rt17-B1, complete genome. 44 6.9 1
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 44 6.9 1
(AC168535) Strongylocentrotus purpuratus clone R3-3091M22, W... 36 7.3 4
(CU372910) Mouse DNA sequence from clone DN-88L9 on chromoso... 40 7.5 3
(AC101919) Mus musculus clone RP24-158A6, WORKING DRAFT SEQU... 40 8.5 2
(AC170318) Bos taurus clone CH240-261G4, WORKING DRAFT SEQUE... 36 9.0 5
(AC101908) Mus musculus chromosome 1, clone RP24-275J1, comp... 40 9.2 2
(CL935573) OA_ABa0045O12.r OA_ABa Oryza australiensis genomi... 38 9.2 2
(AC188432) Pan troglodytes BAC clone CH251-676M19 from chrom... 36 9.8 3

>(AU038897) Dictyostelium discoideum slug cDNA, clone SSM115.
Length = 640

Score = 1076 bits (543), Expect = 0.0
Identities = 543/543 (100%)
Strand = Plus / Plus


Query: 56 atatctcacaccaattaatgaactttatggttttataaaggttaaagctttgaataggct 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatctcacaccaattaatgaactttatggttttataaaggttaaagctttgaataggct 60


Query: 116 atcattatttggtgttgagaaagatgtagactttgatgatcctctctcaaagtggtataa 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcattatttggtgttgagaaagatgtagactttgatgatcctctctcaaagtggtataa 120


Query: 176 taataaagaaggttatgttatggatagattctcttactttatgtgtttcaaatgtaagaa 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taataaagaaggttatgttatggatagattctcttactttatgtgtttcaaatgtaagaa 180


Query: 236 accctattttggtggtgaaaaggtttgtgcaattgctgacgaaaatagaattgctggtga 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accctattttggtggtgaaaaggtttgtgcaattgctgacgaaaatagaattgctggtga 240


Query: 296 gcataaacctgaagaattggtttgtggaggttgtagttcaagtggtaatgaaaattgtaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcataaacctgaagaattggtttgtggaggttgtagttcaagtggtaatgaaaattgtaa 300


Query: 356 aatccatggaaaagagtttatagagtacaaatgtaaatattgttgtcgtatctctgcttt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatccatggaaaagagtttatagagtacaaatgtaaatattgttgtcgtatctctgcttt 360


Query: 416 cttttgttggggtaactctcatttctgtgttgaatgtcatagaaatgtaaatcatgttgc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttttgttggggtaactctcatttctgtgttgaatgtcatagaaatgtaaatcatgttgc 420


Query: 476 gcaaatcccaaaaactcaattacctcaatgtaagtgtgaaggaagtgaaaaacatatttc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcaaatcccaaaaactcaattacctcaatgtaagtgtgaaggaagtgaaaaacatatttc 480


Query: 536 tggtgaagaattttgttatggatgttcaatgtgtaaaataattagtaatagtgaataatc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggtgaagaattttgttatggatgttcaatgtgtaaaataattagtaatagtgaataatc 540


Query: 596 ata 598
|||
Sbjct: 541 ata 543

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 745,925,720
Number of extensions: 46108070
Number of successful extensions: 3492538
Number of sequences better than 10.0: 54
Length of query: 694
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 670
Effective length of database: 97,308,875,965
Effective search space: 65196946896550
Effective search space used: 65196946896550
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.20
Homology vs Protein
Query= Contig-U05836-1 (Contig-U05836-1Q) /CSM_Contig/Contig-U05836-1Q.Seq.d
(694 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(O75592) RecName: Full=Probable E3 ubiquitin-protein ligase MYCB... 168 2e-40
AF075587_1(AF075587|pid:none) Homo sapiens protein associated wi... 168 2e-40
AL359257_2(AL359257|pid:none) Human DNA sequence from clone RP11... 168 2e-40
BC037971_1(BC037971|pid:none) Homo sapiens MYC binding protein 2... 168 2e-40
AF083244_1(AF083244|pid:none) Homo sapiens HSPC026 mRNA, complet... 167 2e-40
AB172863_1(AB172863|pid:none) Macaca fascicularis brain cDNA clo... 167 3e-40
BC059257_1(BC059257|pid:none) Mus musculus MYC binding protein 2... 167 3e-40
AY325887_1(AY325887|pid:none) Mus musculus highwire (Phr1) mRNA,... 167 4e-40
AB172733_1(AB172733|pid:none) Macaca fascicularis brain cDNA clo... 165 1e-39
AY113376_1(AY113376|pid:none) Drosophila melanogaster LP10764 fu... 164 2e-39
(Q9NB71) RecName: Full=E3 ubiquitin-protein ligase highwire; ... 164 2e-39
AF262977_1(AF262977|pid:none) Drosophila melanogaster highwire (... 164 2e-39
(Q17551) RecName: Full=E3 ubiquitin-protein ligase rpm-1; ... 157 4e-37
CP001327_118(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 103 4e-21
AY973969_1(AY973969|pid:none) Leishmania major excreted/secreted... 54 3e-06
AM494961_8(AM494961|pid:none) Leishmania braziliensis chromosome... 50 5e-05
BC077901_1(BC077901|pid:none) Xenopus laevis MGC80746 protein, m... 44 0.005
BC078615_1(BC078615|pid:none) Xenopus laevis MGC85575 protein, m... 43 0.008
BT056943_1(BT056943|pid:none) Salmo salar clone ssal-rgb2-609-36... 40 0.067
AK304680_1(AK304680|pid:none) Homo sapiens cDNA FLJ55274 complet... 40 0.067
AF220153_1(AF220153|pid:none) Homo sapiens four and a half LIM d... 39 0.15
CR857378_1(CR857378|pid:none) Pongo abelii mRNA; cDNA DKFZp468P2... 39 0.15
(Q9Y630) RecName: Full=Four and a half LIM domains protein 1; ... 39 0.15
AL078638_8(AL078638|pid:none) Human DNA sequence from clone RP11... 39 0.15
AK301642_1(AK301642|pid:none) Homo sapiens cDNA FLJ55259 complet... 39 0.15
AL078638_6(AL078638|pid:none) Human DNA sequence from clone RP11... 39 0.15
AK122708_1(AK122708|pid:none) Homo sapiens cDNA FLJ16189 fis, cl... 39 0.15
AL078638_9(AL078638|pid:none) Human DNA sequence from clone RP11... 39 0.15
CP001323_837(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 39 0.19
(Q14622) RecName: Full=Integrin beta-1; AltName: Full=Fibronecti... 37 0.43
AJ275967_2(AJ275967|pid:none) Sus scrofa fhl1C gene for four and... 37 0.43
AJ275967_1(AJ275967|pid:none) Sus scrofa fhl1C gene for four and... 37 0.43
B27079(B27079) fibronectin receptor beta chain precursor - human... 37 0.43
BX537407_1(BX537407|pid:none) Homo sapiens mRNA; cDNA DKFZp686D0... 37 0.43
AF187991_1(AF187991|pid:none) Homo sapiens zinc finger protein Z... 37 0.57
AK302106_1(AK302106|pid:none) Homo sapiens cDNA FLJ57802 complet... 37 0.57
FJ039903_1(FJ039903|pid:none) Hordeum vulgare DEP1 (DEP1) mRNA, ... 37 0.74
G02741(JC4893;G02741)skeletal muscle LIM-protein SLIM1 - human 37 0.74
BC167809_1(BC167809|pid:none) Synthetic construct Homo sapiens c... 37 0.74
(Q28FG2) RecName: Full=Prickle-like protein 1; &CR761986_1(CR76... 37 0.74
(Q04592) RecName: Full=Proprotein convertase subtilisin/kexin ty... 36 0.96
AF110763_1(AF110763|pid:none) Homo sapiens skeletal muscle LIM-p... 36 0.96
BC072725_1(BC072725|pid:none) Danio rerio four and a half LIM do... 36 0.96
AK098175_1(AK098175|pid:none) Homo sapiens cDNA FLJ40856 fis, cl... 36 0.96
(Q95K52) RecName: Full=Zinc finger protein 283; &AB066540_1(AB0... 36 0.96
A48225(A48225;JX0248) subtilisin-like proprotein convertase (EC ... 36 0.96
CR628337_2119(CR628337|pid:none) Legionella pneumophila str. Len... 36 0.96
CP000675_2263(CP000675|pid:none) Legionella pneumophila str. Cor... 36 0.96
AK294852_1(AK294852|pid:none) Homo sapiens cDNA FLJ59323 complet... 36 0.96
AY055473_1(AY055473|pid:none) Xenopus laevis LIM protein prickle... 36 1.3
(Q08287) RecName: Full=60S ribosome subunit biogenesis protein N... 36 1.3
(Q90WV2) RecName: Full=Prickle-like protein 1-B; AltName: Full=X... 36 1.3
CR858833_1(CR858833|pid:none) Pongo abelii mRNA; cDNA DKFZp468O1... 36 1.3
AJ002382_1(AJ002382|pid:none) Dictyostelium discoideum mRNA for ... 35 1.6
(P97447) RecName: Full=Four and a half LIM domains protein 1; ... 35 2.1
AL671998_1(AL671998|pid:none) Mouse DNA sequence from clone RP23... 35 2.1
AL671998_5(AL671998|pid:none) Mouse DNA sequence from clone RP23... 35 2.1
AL671998_6(AL671998|pid:none) Mouse DNA sequence from clone RP23... 35 2.1
AL671998_2(AL671998|pid:none) Mouse DNA sequence from clone RP23... 35 2.1
BC159222_1(BC159222|pid:none) Danio rerio four and a half LIM do... 35 2.1
BC098954_1(BC098954|pid:none) Xenopus laevis LIM protein prickle... 35 2.1
AL671998_3(AL671998|pid:none) Mouse DNA sequence from clone RP23... 35 2.1
AL672042_5(AL672042|pid:none) Mouse DNA sequence from clone RP23... 35 2.2
(Q8N7Q3) RecName: Full=Zinc finger protein 676; 35 2.8
(Q5RFL4) RecName: Full=Zinc finger FYVE domain-containing protei... 35 2.8
BC160411_1(BC160411|pid:none) Xenopus tropicalis hypothetical pr... 35 2.8
AK129400_1(AK129400|pid:none) Mus musculus premature mRNA for mK... 35 2.8
AE017354_2139(AE017354|pid:none) Legionella pneumophila subsp. p... 35 2.8
(Q810J8) RecName: Full=Zinc finger FYVE domain-containing protei... 35 2.8
AK139825_1(AK139825|pid:none) Mus musculus 2 cells egg cDNA, RIK... 35 2.8
AK170954_1(AK170954|pid:none) Mus musculus NOD-derived CD11c +ve... 35 2.8
FN317463_1(FN317463|pid:none) Schistosoma japonicum isolate Anhu... 35 2.8
AM910991_170(AM910991|pid:none) Plasmodium knowlesi strain H chr... 35 2.8
CR759893_1(CR759893|pid:none) Zebrafish DNA sequence from clone ... 34 3.7
BC061782_1(BC061782|pid:none) Rattus norvegicus four and a half ... 34 3.7
AB046809_1(AB046809|pid:none) Homo sapiens mRNA for KIAA1589 pro... 34 3.7
AM494946_16(AM494946|pid:none) Leishmania braziliensis chromosom... 34 3.7
AK027399_1(AK027399|pid:none) Homo sapiens cDNA FLJ14493 fis, cl... 34 3.7
AL844508_97(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 34 3.7
(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'... 34 4.8
EU836124_1(EU836124|pid:none) Stomoxys pallidus isolate Spg3 cyt... 34 4.8
DQ230834_1(DQ230834|pid:none) Avian infectious bronchitis virus ... 33 6.2
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA... 33 6.3
BC149639_1(BC149639|pid:none) Bos taurus lymphotoxin beta recept... 33 8.2
CP000743_768(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 33 8.2
DQ181258_1(DQ181258|pid:none) Horakiella emasensis voucher UPOL ... 33 8.2
EU836125_1(EU836125|pid:none) Stomoxys pallidus isolate Spg4 cyt... 33 8.2

>(O75592) RecName: Full=Probable E3 ubiquitin-protein ligase MYCBP2;
EC=6.3.2.-; AltName: Full=Myc-binding protein 2;
AltName: Full=Protein associated with Myc; AltName:
Full=Pam/highwire/rpm-1 protein;
&AL159154_1(AL159154|pid:none)
&AL159158_1(AL159158|pid:none)
&AL359257_1(AL359257|pid:none)
Length = 4640

Score = 168 bits (425), Expect = 2e-40
Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 14/199 (7%)
Frame = +3

Query: 18 LCSQNMQHPCLEKYLTPINELYGFIKVKALNRLSLFGVEKDVDFDDPLSKWYNNKEGYVM 197
+C + H L+ L PI ELY ++ KAL RL G+ K P ++YN+ GY M
Sbjct: 4439 ICKNKINHIVLKDLLDPIKELYEDVRRKALMRLEYEGLHKSEAITTPGVRFYNDPAGYAM 4498

Query: 198 DRFSYFMCFKCKKPYFGGEKVCAIADENRIAGEHKPEELVCGGCSS-SGNENCKIHGKEF 374
+R++Y++C+KC+K YFGGE C A+ R ++ P EL+CG CS S + C HG +F
Sbjct: 4499 NRYAYYVCYKCRKAYFGGEARCD-AEAGR-GDDYDPRELICGACSDVSRAQMCPKHGTDF 4556

Query: 375 IEYKCKYCCRISAFFCWGNSHFCVECHRNVNHVAQIPKTQLPQC-------KCEGSE--K 527
+EYKC+YCC ++ FFC+G +HFC CH + + IPK +LP C + EG+E
Sbjct: 4557 LEYKCRYCCSVAVFFCFGTTHFCNACHDDFQRMTSIPKEELPHCPAGPKGKQLEGTECPL 4616

Query: 528 HI----SGEEFCYGCSMCK 572
H+ +GEEF GC +C+
Sbjct: 4617 HVVHPPTGEEFALGCGVCR 4635

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,065,712,960
Number of extensions: 22174286
Number of successful extensions: 60986
Number of sequences better than 10.0: 88
Number of HSP's gapped: 60789
Number of HSP's successfully gapped: 89
Length of query: 231
Length of database: 1,040,966,779
Length adjustment: 124
Effective length of query: 107
Effective length of database: 643,635,439
Effective search space: 68868991973
Effective search space used: 68868991973
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.27 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U05836-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0