Contig-U05795-1
Contig ID Contig-U05795-1
Contig update 2002. 9.13
Contig sequence
>Contig-U05795-1 (Contig-U05795-1Q) /CSM_Contig/Contig-U05795-1Q.Seq.d
CAAATAAATTAAATAAATAAATTAAAGATGGTTAAAGATGATAATATGAA
AGATATTGAAGATGATCATGAAGATGAACATGAAGAAGAGGAAGAACATG
AAGAAGAGGAAGAACATGAAGATGAGCATGAGGAAGAGGAAGAAGAACAT
GAAGAAGAGGATGGTGGAGAAAAAACTAAAAGTAAAAATAAAGATAAAGA
TAATACAAATGATGAAAAAAAGAAATCAAAAAGACGTACACGTGTTGAAG
GTGATATTCAATTACCAGTTGCAAGAATTAAAAGAATAATGAGATGTGAT
AAAGATGTTAAAATAATTTCTTCTGATGCTGTTATGTTAGTTGCAAAATC
GACTGAAATGTTTTTAGATTATTTAGTCAAAGAAGCATATAAATCAAGTG
GCAAAAAGAAGACTTTACAATATAAAGATTTAGCTTCAACAATTAAAGGT
GTAGATAATTTAGACTTTTTATCAGAGATTATACCTGAAAAAGTTTCAAT
ATAATAATATAGTAATAATATTTATAATAAAAAAAAAAAATTTTTTNAAA
AAAAA

Gap no gap
Contig length 555
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2208760
End point 2209261
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 4
Link to clone list U05795
List of clone(s)

est1=SSL604E,1,530
est2=VSJ765F,1,556
est3=VSG795F,3,442
est4=VSJ765Z,67,542
Translated Amino Acid sequence
qin*INKLKMVKDDNMKDIEDDHEDEHEEEEEHEEEEEHEDEHEEEEEEHEEEDGGEKTK
SKNKDKDNTNDEKKKSKRRTRVEGDIQLPVARIKRIMRCDKDVKIISSDAVMLVAKSTEM
FLDYLVKEAYKSSGKKKTLQYKDLASTIKGVDNLDFLSEIIPEKVSI**ysnniynkkkk
ffxkk


Translated Amino Acid sequence (All Frames)
Frame A:
qin*INKLKMVKDDNMKDIEDDHEDEHEEEEEHEEEEEHEDEHEEEEEEHEEEDGGEKTK
SKNKDKDNTNDEKKKSKRRTRVEGDIQLPVARIKRIMRCDKDVKIISSDAVMLVAKSTEM
FLDYLVKEAYKSSGKKKTLQYKDLASTIKGVDNLDFLSEIIPEKVSI**ysnniynkkkk
ffxkk


Frame B:
k*ik*in*rwlkmii*kilkmimkmnmkkrknmkkrknmkmsmrkrkknmkkrmvekklk
vkikikiiqmmkkrnqkdvhvlkvifnyqlqelke**dvikmlk*fllmllc*lqnrlkc
f*ii*skkhinqvakrrlyniki*lqqlkv*ii*tfyqrlylkkfqynniviifiikkkn
fxkk


Frame C:
nklnk*ikdg*r**yery*r*s*r*t*rrgrt*rrgrt*r*a*grgrrt*rrgwwrkn*k
*k*r*r*yk**kkeikktytc*r*ysitsckn*knnem**rc*nnff*ccyvsckid*nv
frlfsqrsi*ikwqkedfti*rfsfnn*rcr*frlfirdyt*ksfniii***yl**kkki
fxkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05795-1 (Contig-U05795-1Q)
/CSM_Contig/Contig-U05795-1Q.Seq.d
(555 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05795-1 (Contig-U05795-1Q) /CSM_Contig/Conti... 609 e-174
Contig-U12170-1 (Contig-U12170-1Q) /CSM_Contig/Conti... 54 2e-07
Contig-U11126-1 (Contig-U11126-1Q) /CSM_Contig/Conti... 50 3e-06
Contig-U09427-1 (Contig-U09427-1Q) /CSM_Contig/Conti... 46 4e-05
Contig-U13992-1 (Contig-U13992-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U06562-1 (Contig-U06562-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U05470-1 (Contig-U05470-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U11487-1 (Contig-U11487-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U11142-1 (Contig-U11142-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U05407-1 (Contig-U05407-1Q) /CSM_Contig/Conti... 40 0.002

>Contig-U05795-1 (Contig-U05795-1Q) /CSM_Contig/Contig-U05795-1Q.Seq.d
Length = 555

Score = 609 bits (307), Expect = e-174
Identities = 307/307 (100%)
Strand = Plus / Plus


Query: 222 gaaatcaaaaagacgtacacgtgttgaaggtgatattcaattaccagttgcaagaattaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaaatcaaaaagacgtacacgtgttgaaggtgatattcaattaccagttgcaagaattaa 281


Query: 282 aagaataatgagatgtgataaagatgttaaaataatttcttctgatgctgttatgttagt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aagaataatgagatgtgataaagatgttaaaataatttcttctgatgctgttatgttagt 341


Query: 342 tgcaaaatcgactgaaatgtttttagattatttagtcaaagaagcatataaatcaagtgg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgcaaaatcgactgaaatgtttttagattatttagtcaaagaagcatataaatcaagtgg 401


Query: 402 caaaaagaagactttacaatataaagatttagcttcaacaattaaaggtgtagataattt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caaaaagaagactttacaatataaagatttagcttcaacaattaaaggtgtagataattt 461


Query: 462 agactttttatcagagattatacctgaaaaagtttcaatataataatatagtaataatat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agactttttatcagagattatacctgaaaaagtttcaatataataatatagtaataatat 521


Query: 522 ttataat 528
|||||||
Sbjct: 522 ttataat 528


Score = 65.9 bits (33), Expect = 4e-11
Identities = 33/33 (100%)
Strand = Plus / Plus


Query: 1 caaataaattaaataaataaattaaagatggtt 33
|||||||||||||||||||||||||||||||||
Sbjct: 1 caaataaattaaataaataaattaaagatggtt 33


>Contig-U12170-1 (Contig-U12170-1Q) /CSM_Contig/Contig-U12170-1Q.Seq.d
Length = 964

Score = 54.0 bits (27), Expect = 2e-07
Identities = 57/67 (85%)
Strand = Plus / Plus


Query: 260 aattaccagttgcaagaattaaaagaataatgagatgtgataaagatgttaaaataattt 319
|||||||| | ||||||||||||| ||| |||| || |||||||||||||| | |||||
Sbjct: 358 aattaccattagcaagaattaaaaaaattatgaaatccgataaagatgttaataaaattt 417


Query: 320 cttctga 326
| |||||
Sbjct: 418 catctga 424


Score = 28.2 bits (14), Expect = 9.4
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 277 attaaaagaataat 290
||||||||||||||
Sbjct: 795 attaaaagaataat 782


>Contig-U11126-1 (Contig-U11126-1Q) /CSM_Contig/Contig-U11126-1Q.Seq.d
Length = 1639

Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 2 aaataaattaaataaataaattaaa 26
|||||||||||||||||||||||||
Sbjct: 120 aaataaattaaataaataaattaaa 144


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,307
Number of Sequences: 6905
Number of extensions: 13307
Number of successful extensions: 3073
Number of sequences better than 10.0: 805
length of query: 555
length of database: 5,674,871
effective HSP length: 16
effective length of query: 539
effective length of database: 5,564,391
effective search space: 2999206749
effective search space used: 2999206749
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 6
Homology vs DNA
Query= Contig-U05795-1 (Contig-U05795-1Q) /CSM_Contig/Contig-U05795-1Q.Seq.d
(555 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU270440) Dictyostelium discoideum vegetative cDNA clone:VS... 583 e-174 2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 345 e-163 3
(C93685) Dictyostelium discoideum slug cDNA, clone SSL604. 559 e-158 2
(AU266821) Dictyostelium discoideum vegetative cDNA clone:VS... 412 e-122 2
(AU270441) Dictyostelium discoideum vegetative cDNA clone:VS... 333 4e-87 1
(AU061919) Dictyostelium discoideum slug cDNA, clone SLG608. 54 0.005 1
(BJ348184) Dictyostelium discoideum cDNA clone:dda32n11, 3' ... 54 0.005 1
(V00705) Yeast mitochondrial var1 gene (allele 40.0) a ribos... 32 0.021 4
(EF079662) Salmo salar tumor necrosis factor alpha mRNA, com... 52 0.021 1
(DW572137) EST_ssal_rgb2_36556 rgb2 Salmo salar cDNA clone s... 52 0.021 1
(DR696012) SMT7-0024 Atlantic Salmon macrophage - Aeromonas ... 52 0.021 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.024 9
(CE176137) tigr-gss-dog-17000326728507 Dog Library Canis lup... 46 0.026 2
(DU939592) 371806 Tomato EcoRI BAC Library Solanum lycopersi... 42 0.051 2
(EY323846) CAWX9613.rev CAWX Helobdella robusta Primary Earl... 36 0.066 2
(AF266067) Brachytron pratense large subunit ribosomal RNA g... 44 0.070 2
(CT573252) Zebrafish DNA sequence from clone CH211-111E20 in... 50 0.085 1
(BX323858) Zebrafish DNA sequence from clone DKEY-102F10 in ... 50 0.085 1
(BX294162) Zebrafish DNA sequence from clone CH211-270C5 in ... 50 0.085 1
(AL929512) Zebrafish DNA sequence from clone CH211-1L10 in l... 50 0.085 1
(BV627313) S215P60036FH5.T0 Clara Pan troglodytes troglodyte... 50 0.085 1
(AC159879) Mus musculus BAC clone RP24-497H22 from chromosom... 50 0.085 1
(AC147187) Pan troglodytes clone CH251-116A11, complete sequ... 50 0.085 1
(AC146115) Pan troglodytes BAC clone RP43-38M17 from chromos... 50 0.085 1
(L43277) Echium russicum clone russ.ab.s gene, trnT(UGU)-trn... 50 0.085 1
(L33355) Echium russicum Gmel. chloroplast trnT(UGU)-trnL(UA... 50 0.085 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 50 0.085 1
(AC107215) Homo sapiens BAC clone RP11-433C15 from 2, comple... 50 0.085 1
(AC084872) Homo sapiens BAC clone RP11-702N14 from 7, comple... 50 0.085 1
(AC158866) Bos taurus clone CH240-126F16, WORKING DRAFT SEQU... 50 0.085 1
(AC151160) Bos taurus clone CH240-471L21, WORKING DRAFT SEQU... 50 0.085 1
(AC140691) Rattus norvegicus clone CH230-131M8, WORKING DRAF... 50 0.085 1
(CU915471) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.085 1
(CU466293) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.085 1
(AC211605) Oryza glaberrima clone OG_BBa0042A24, *** SEQUENC... 50 0.085 1
(AC210455) Oryza glaberrima clone OG_BBa0020J03, *** SEQUENC... 50 0.085 1
(AC163461) Bos taurus clone CH240-135N22, *** SEQUENCING IN ... 50 0.085 1
(AC024977) Homo sapiens chromosome 2 clone RP11-433C15 map 2... 50 0.085 1
(AQ828809) HS_5262_A1_E11_T7A RPCI-11 Human Male BAC Library... 50 0.085 1
(ED150414) AUAC-aav41e08.g1 Ascaris suum whole genome shotgu... 50 0.085 1
(CT473130) Sus scrofa genomic clone CH242-427N10, genomic su... 50 0.085 1
(CE592236) tigr-gss-dog-17000366512511 Dog Library Canis lup... 50 0.085 1
(BZ230701) CH230-527H22.TJ CHORI-230 Segment 2 Rattus norveg... 50 0.085 1
(BX159188) Danio rerio genomic clone DKEY-147J3, genomic sur... 50 0.085 1
(AU284790) Dictyostelium discoideum gamete cDNA clone:FC-BL0... 50 0.085 1
(AU284757) Dictyostelium discoideum gamete cDNA clone:FC-BJ2... 50 0.085 1
(CD242111) AGENCOURT_14122590 NIH_MGC_187 Homo sapiens cDNA ... 50 0.085 1
(BJ335048) Dictyostelium discoideum cDNA clone:dda48a21, 5' ... 50 0.085 1
(BJ332189) Dictyostelium discoideum cDNA clone:dda38c11, 5' ... 50 0.085 1
(BJ331865) Dictyostelium discoideum cDNA clone:dda37h12, 5' ... 50 0.085 1
(BJ330607) Dictyostelium discoideum cDNA clone:dda32k05, 5' ... 50 0.085 1
(BJ330448) Dictyostelium discoideum cDNA clone:dda31h18, 5' ... 50 0.085 1
(BX004822) Zebrafish DNA sequence from clone DKEY-18F18. 40 0.095 7
(DY682837) TTEAH27THC Tetrahymena thermophila EST library, c... 46 0.12 2
(CX581123) TTE00017319 Amplicon Express - Conjugative Form T... 46 0.13 2
(U49822) Saccharomyces douglasii mitochondrial tRNA-Ser and ... 32 0.13 4
(AC196671) Rhesus Macaque BAC CH250-243C8 () complete seque... 48 0.14 2
(BX255949) Zebrafish DNA sequence from clone DKEY-76F5 in li... 46 0.14 3
(EJ196832) 1092344246623 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.17 2
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.23 7
(CR925881) Zebrafish DNA sequence from clone DKEY-104F13 in ... 48 0.30 2
(AC149637) Medicago truncatula clone mth2-181h2, complete se... 40 0.32 2
(CT955969) Zebrafish DNA sequence from clone DKEYP-74F12 in ... 48 0.34 1
(CR854832) Zebrafish DNA sequence from clone DKEY-96J22 in l... 48 0.34 1
(CR847506) Zebrafish DNA sequence from clone CH211-225N13 in... 48 0.34 1
(CR388183) Zebrafish DNA sequence from clone DKEY-27P12. 48 0.34 1
(BX571705) Zebrafish DNA sequence from clone DKEY-261E22 in ... 48 0.34 1
(BX537346) Zebrafish DNA sequence from clone DKEYP-2A6 in li... 48 0.34 1
(AL929306) Zebrafish DNA sequence from clone CH211-145C5 in ... 48 0.34 1
(BN000073) TPA: Homo sapiens lymphocyte-specific protein tyr... 48 0.34 1
(BS000663) Pan troglodytes chromosome Y clone: PTB-620F03. 48 0.34 1
(BS000653) Pan troglodytes chromosome Y clone:PTB-017B13, co... 48 0.34 1
(BS000601) Pan troglodytes chromosome Y clone:PTB-291L09, co... 48 0.34 1
(AC196698) Rhesus Macaque BAC CH250-329E22 () complete sequ... 48 0.34 1
(AC149095) Pan troglodytes BAC clone CH251-141L12 from Y, co... 48 0.34 1
(AC146209) Pan troglodytes BAC clone CH251-375D6 from Y, com... 48 0.34 1
(DD164637) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 48 0.34 1
(CS468876) Sequence 67 from Patent EP1748080. 48 0.34 1
(CS468875) Sequence 66 from Patent EP1748080. 48 0.34 1
(CS419353) Sequence 67 from Patent WO2006094836. 48 0.34 1
(CS419352) Sequence 66 from Patent WO2006094836. 48 0.34 1
(AX695857) Sequence 1484 from Patent WO03008583. 48 0.34 1
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 48 0.34 1
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 48 0.34 1
(AL121991) Human DNA sequence from clone RP4-675E8 on chromo... 48 0.34 1
(AC098872) Homo sapiens BAC clone RP11-773P9 from 2, complet... 48 0.34 1
(AC092266) Homo sapiens chromosome 5 clone RP11-24P24, compl... 48 0.34 1
(AC026709) Homo sapiens chromosome 5 clone CTD-2084I18, comp... 48 0.34 1
(AC160215) Atelerix albiventris clone LB4-204M24, WORKING DR... 48 0.34 1
(AC157852) Atelerix albiventris clone LB4-260B7, WORKING DRA... 48 0.34 1
(AC157851) Atelerix albiventris clone LB4-16J17, WORKING DRA... 48 0.34 1
(AC112366) Rattus norvegicus clone CH230-113E13, *** SEQUENC... 48 0.34 1
(AC111974) Rattus norvegicus clone CH230-268E11, WORKING DRA... 48 0.34 1
(CU928348) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.34 1
(CU856643) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.34 1
(CR940348) Theileria annulata genomic DNA chromosome 2. 48 0.34 1
(CR925878) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.34 1
(CR925729) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.34 1
(AC222975) Bos taurus clone CH240-433I21, WORKING DRAFT SEQU... 48 0.34 1
(AC194277) Zea mays chromosome 7 clone CH201-282I17; ZMMBBc0... 48 0.34 1

>(AU270440) Dictyostelium discoideum vegetative cDNA clone:VSJ765,
5' end single read.
Length = 556

Score = 583 bits (294), Expect(2) = e-174
Identities = 294/294 (100%)
Strand = Plus / Plus


Query: 235 cgtacacgtgttgaaggtgatattcaattaccagttgcaagaattaaaagaataatgaga 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cgtacacgtgttgaaggtgatattcaattaccagttgcaagaattaaaagaataatgaga 294


Query: 295 tgtgataaagatgttaaaataatttcttctgatgctgttatgttagttgcaaaatcgact 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tgtgataaagatgttaaaataatttcttctgatgctgttatgttagttgcaaaatcgact 354


Query: 355 gaaatgtttttagattatttagtcaaagaagcatataaatcaagtggcaaaaagaagact 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gaaatgtttttagattatttagtcaaagaagcatataaatcaagtggcaaaaagaagact 414


Query: 415 ttacaatataaagatttagcttcaacaattaaaggtgtagataatttagactttttatca 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttacaatataaagatttagcttcaacaattaaaggtgtagataatttagactttttatca 474


Query: 475 gagattatacctgaaaaagtttcaatataataatatagtaataatatttataat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gagattatacctgaaaaagtttcaatataataatatagtaataatatttataat 528

Score = 67.9 bits (34), Expect(2) = e-174
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 1 caaataaattaaataaataaattaaagatggtta 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 caaataaattaaataaataaattaaagatggtta 34

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 510,375,162
Number of extensions: 39799540
Number of successful extensions: 5917977
Number of sequences better than 10.0: 1246
Length of query: 555
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 532
Effective length of database: 93,106,754,628
Effective search space: 49532793462096
Effective search space used: 49532793462096
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.20
Homology vs Protein
Query= Contig-U05795-1 (Contig-U05795-1Q) /CSM_Contig/Contig-U05795-1Q.Seq.d
(555 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM920436_1017(AM920436|pid:none) Penicillium chrysogenum Wiscons... 75 1e-12
BC171097_1(BC171097|pid:none) Xenopus tropicalis chromatin acces... 70 3e-11
CR848420_1(CR848420|pid:none) Xenopus tropicalis finished cDNA, ... 70 3e-11
BT057801_1(BT057801|pid:none) Salmo salar clone ssal-eve-542-367... 70 3e-11
AC026875_7(AC026875|pid:none) Genomic sequence for Arabidopsis t... 70 3e-11
BC016593_1(BC016593|pid:none) Mus musculus chromatin accessibili... 70 3e-11
AK229011_1(AK229011|pid:none) Arabidopsis thaliana mRNA for hypo... 70 3e-11
BT047530_1(BT047530|pid:none) Salmo salar clone ssal-sjb-009-179... 70 5e-11
BC095224_1(BC095224|pid:none) Danio rerio zgc:110337, mRNA (cDNA... 70 5e-11
CP001577_473(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 69 6e-11
BC155102_1(BC155102|pid:none) Danio rerio nuclear transcription ... 69 6e-11
BC090283_1(BC090283|pid:none) Danio rerio zgc:110753, mRNA (cDNA... 69 6e-11
BC159088_1(BC159088|pid:none) Xenopus tropicalis chromatin acces... 69 6e-11
BT075442_1(BT075442|pid:none) Osmerus mordax clone omor-eva-508-... 69 8e-11
AC136503_16(AC136503|pid:none) Medicago truncatula clone mth2-15... 69 8e-11
BT056437_1(BT056437|pid:none) Salmo salar clone ssal-eve-509-323... 69 8e-11
EF081712_1(EF081712|pid:none) Picea sitchensis clone WS02715_F03... 69 1e-10
BT077870_1(BT077870|pid:none) Lepeophtheirus salmonis clone lsal... 68 1e-10
CR382128_128(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 68 1e-10
(Q9UML0) RecName: Full=Nuclear transcription factor Y subunit ga... 68 2e-10
AL354914_7(AL354914|pid:none) Human DNA sequence from clone RP11... 68 2e-10
D85425_1(D85425|pid:none) Homo sapiens mRNA for transactivator H... 68 2e-10
(Q5E9X1) RecName: Full=Nuclear transcription factor Y subunit ga... 68 2e-10
(Q5RA23) RecName: Full=Nuclear transcription factor Y subunit ga... 68 2e-10
AB104613_1(AB104613|pid:none) Daucus carota C-HAP5B mRNA for CCA... 68 2e-10
BC045364_1(BC045364|pid:none) Danio rerio nuclear transcription ... 68 2e-10
BC065645_1(BC065645|pid:none) Danio rerio nuclear transcription ... 68 2e-10
AL354914_2(AL354914|pid:none) Human DNA sequence from clone RP11... 68 2e-10
AB385526_1(AB385526|pid:none) Synthetic construct DNA, clone: pF... 68 2e-10
AB208975_1(AB208975|pid:none) Homo sapiens mRNA for nuclear tran... 68 2e-10
I59348(I59348)CCAAT binding transcription factor CBF subunit C -... 68 2e-10
BT044660_1(BT044660|pid:none) Salmo salar clone ssal-rgf-002-101... 68 2e-10
AL354914_6(AL354914|pid:none) Human DNA sequence from clone RP11... 68 2e-10
AL354914_5(AL354914|pid:none) Human DNA sequence from clone RP11... 68 2e-10
BC105387_1(BC105387|pid:none) Bos taurus nuclear transcription f... 68 2e-10
FN392321_653(FN392321|pid:none) Pichia pastoris GS115 chromosome... 68 2e-10
(Q62725) RecName: Full=Nuclear transcription factor Y subunit ga... 68 2e-10
AB171715_1(AB171715|pid:none) Macaca fascicularis brain cDNA clo... 68 2e-10
AB104612_1(AB104612|pid:none) Daucus carota C-HAP5A mRNA for CCA... 68 2e-10
AE016817_790(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 67 2e-10
(Q8LCG7) RecName: Full=Nuclear transcription factor Y subunit C-... 67 2e-10
CR954211_34(CR954211|pid:none) Ostreococcus tauri strain OTTH059... 67 2e-10
Y13725_1(Y13725|pid:none) Arabidopsis thaliana mRNA for Hap5b tr... 67 2e-10
BC077939_1(BC077939|pid:none) Xenopus laevis cDNA clone MGC:8090... 67 3e-10
EF085083_1(EF085083|pid:none) Picea sitchensis clone WS0296_J03 ... 67 3e-10
BC120142_1(BC120142|pid:none) Bos taurus chromatin accessibility... 67 3e-10
DQ311296_1(DQ311296|pid:none) Bombyx mori nuclear Y/CCAAT-box bi... 67 3e-10
BC063353_1(BC063353|pid:none) Xenopus tropicalis nuclear transcr... 67 3e-10
BC155935_1(BC155935|pid:none) Xenopus laevis hypothetical protei... 67 3e-10
AF041205_1(AF041205|pid:none) Xenopus laevis nuclear Y/CCAAT-box... 67 3e-10
AY490243_1(AY490243|pid:none) Lycopersicon esculentum CONSTANS i... 67 4e-10
EF147023_1(EF147023|pid:none) Populus trichocarpa clone WS01226_... 67 4e-10
AM425377_1(AM425377|pid:none) Vitis vinifera contig VV78X032994.... 67 4e-10
AB259048_1(AB259048|pid:none) Xenopus laevis POLE4 mRNA for DNA ... 67 4e-10
CU633900_282(CU633900|pid:none) Podospora anserina genomic DNA c... 67 4e-10
AB288043_1(AB288043|pid:none) Oryza sativa Japonica Group OsHAP5... 67 4e-10
CR382136_455(CR382136|pid:none) Debaryomyces hansenii strain CBS... 66 5e-10
Z74792_1(Z74792|pid:none) H.sapiens mRNA for CCAAT transcription... 66 5e-10
CU928176_209(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 66 7e-10
DQ228352_1(DQ228352|pid:none) Solanum tuberosum clone 150D05 unk... 66 7e-10
U96847_1(U96847|pid:none) Emericella nidulans HapE (hapE) gene, ... 66 7e-10
AY490244_1(AY490244|pid:none) Lycopersicon esculentum CONSTANS i... 66 7e-10
AM920427_467(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 66 7e-10
AM441941_3(AM441941|pid:none) Vitis vinifera contig VV78X036116.... 66 7e-10
BT071091_1(BT071091|pid:none) Picea sitchensis clone WS02770_F19... 66 7e-10
EF081848_1(EF081848|pid:none) Picea sitchensis clone WS02715_K12... 66 7e-10
AB010432_1(AB010432|pid:none) Aspergillus oryzae gene for HAPE, ... 66 7e-10
CP000502_303(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 65 9e-10
U62297_1(U62297|pid:none) Mus musculus transcription factor NF-Y... 65 1e-09
CP000600_167(CP000600|pid:none) Ostreococcus lucimarinus CCE9901... 65 1e-09
(Q9NRG0) RecName: Full=Chromatin accessibility complex protein 1... 65 1e-09
AM449922_3(AM449922|pid:none) Vitis vinifera contig VV78X224259.... 65 2e-09
(Q8L4B2) RecName: Full=Nuclear transcription factor Y subunit C-... 64 2e-09
AP008214_489(AP008214|pid:none) Oryza sativa (japonica cultivar-... 64 2e-09
AY324803_1(AY324803|pid:none) Aspergillus niger HapE (hapE) mRNA... 64 2e-09
(Q9ZVL3) RecName: Full=Nuclear transcription factor Y subunit C-... 64 2e-09
AY086605_1(AY086605|pid:none) Arabidopsis thaliana clone 26157 m... 64 2e-09
(Q02516) RecName: Full=Transcriptional activator HAP5; &S67270(... 64 3e-09
AB288042_1(AB288042|pid:none) Oryza sativa Japonica Group OsHAP5... 64 3e-09
BT041629_1(BT041629|pid:none) Zea mays full-length cDNA clone ZM... 64 3e-09
AE017346_92(AE017346|pid:none) Cryptococcus neoformans var. neof... 64 3e-09
AY118858_1(AY118858|pid:none) Drosophila melanogaster GM21739 fu... 63 5e-09
BT037947_1(BT037947|pid:none) Zea mays full-length cDNA clone ZM... 63 5e-09
(Q9NR33) RecName: Full=DNA polymerase epsilon subunit 4; ... 63 5e-09
(Q9CQ36) RecName: Full=DNA polymerase epsilon subunit 4; ... 63 5e-09
AF261688_1(AF261688|pid:none) Homo sapiens DNA polymerase epsilo... 63 5e-09
BT078450_1(BT078450|pid:none) Lepeophtheirus salmonis clone lsal... 63 5e-09
AM050668_1(AM050668|pid:none) Triticum aestivum chromosome 5BL c... 63 6e-09
EU952553_1(EU952553|pid:none) Zea mays clone 1283552 nuclear tra... 63 6e-09
AB288045_1(AB288045|pid:none) Oryza sativa Japonica Group OsHAP5... 63 6e-09
CR380957_421(CR380957|pid:none) Candida glabrata strain CBS138 c... 62 8e-09
(Q9FGP7) RecName: Full=Nuclear transcription factor Y subunit C-... 62 1e-08
EF084647_1(EF084647|pid:none) Picea sitchensis clone WS02719_H11... 61 2e-08
CP001331_55(CP001331|pid:none) Micromonas sp. RCC299 chromosome ... 60 3e-08
AE014187_372(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 60 3e-08
FN313744_1(FN313744|pid:none) Schistosoma japonicum isolate Anhu... 60 4e-08
T32269(T32269)hypothetical protein F23F1.1 - Caenorhabditis eleg... 60 5e-08
FN357377_4(FN357377|pid:none) Schistosoma mansoni genome sequenc... 60 5e-08
AF024493_10(AF024493|pid:none) Caenorhabditis elegans cosmid F23... 60 5e-08
(Q6BX14) RecName: Full=DNA polymerase epsilon subunit C; ... 60 5e-08
CU928180_459(CU928180|pid:none) Kluyveromyces thermotolerans str... 59 9e-08
AM270320_116(AM270320|pid:none) Aspergillus niger contig An14c01... 58 1e-07
AC116330_17(AC116330|pid:none) Dictyostelium discoideum chromoso... 58 2e-07
BT081464_1(BT081464|pid:none) Rana catesbeiana clone rcat-evr-51... 58 2e-07
CP000497_234(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 58 2e-07
CR382127_106(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 58 2e-07
AL590445_46(AL590445|pid:none) chromosome V of strain GB-M1 of E... 57 2e-07
FN357909_3(FN357909|pid:none) Schistosoma mansoni genome sequenc... 57 4e-07
AY812453_1(AY812453|pid:none) Schistosoma japonicum SJCHGC07914 ... 57 4e-07
FM992688_336(FM992688|pid:none) Candida dubliniensis CD36 chromo... 56 6e-07
AM910994_667(AM910994|pid:none) Plasmodium knowlesi strain H chr... 56 7e-07
AK103607_1(AK103607|pid:none) Oryza sativa Japonica Group cDNA c... 55 9e-07
FN392320_660(FN392320|pid:none) Pichia pastoris GS115 chromosome... 55 2e-06
AL132949_7(AL132949|pid:none) Caenorhabditis elegans YAC Y53F4B,... 54 4e-06
AC136138_24(AC136138|pid:none) Medicago truncatula clone mth2-8f... 52 8e-06
EU970773_1(EU970773|pid:none) Zea mays clone 350567 histone-like... 52 1e-05
EU974415_1(EU974415|pid:none) Zea mays clone 448650 unknown mRNA. 50 3e-05
CR388024_1(CR388024|pid:none) Zebrafish DNA sequence from clone ... 50 3e-05
EU952420_1(EU952420|pid:none) Zea mays clone 1280037 repressor p... 50 3e-05
AF464905_1(AF464905|pid:none) Zea mays repressor protein (DrAp1)... 50 3e-05
AB017070_7(AB017070|pid:none) Arabidopsis thaliana genomic DNA, ... 50 3e-05
(Q10315) RecName: Full=DNA polymerase epsilon subunit C; ... 50 4e-05
AB028008_1(AB028008|pid:none) Schizosaccharomyces pombe gene for... 50 4e-05
EU958236_1(EU958236|pid:none) Zea mays clone 1680099 nuclear tra... 50 5e-05
BT062754_1(BT062754|pid:none) Zea mays full-length cDNA clone ZM... 49 7e-05
(Q6CLM5) RecName: Full=DNA polymerase epsilon subunit C; ... 49 7e-05
(Q9FGP6) RecName: Full=Nuclear transcription factor Y subunit C-... 49 9e-05
AF462841_1(AF462841|pid:none) Arabidopsis thaliana At3g12480/MQC... 48 2e-04
AF464904_1(AF464904|pid:none) Oryza sativa repressor protein (Dr... 48 2e-04
DQ275146_1(DQ275146|pid:none) Boechera stricta At3g12480-like pr... 48 2e-04
AP007157_93(AP007157|pid:none) Aspergillus oryzae RIB40 genomic ... 48 2e-04
CU928179_870(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 48 2e-04
CR940347_643(CR940347|pid:none) Theileria annulata strain Ankara... 47 3e-04
AB288047_1(AB288047|pid:none) Oryza sativa Japonica Group OsHAP5... 47 4e-04
AM269996_125(AM269996|pid:none) Aspergillus niger contig An02c00... 47 4e-04
EU967616_1(EU967616|pid:none) Zea mays clone 304857 dr1-associat... 47 4e-04
AP007175_404(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 46 6e-04
AB288048_1(AB288048|pid:none) Oryza sativa Japonica Group OsDrAp... 46 6e-04
(Q54DA1) RecName: Full=Dr1-associated corepressor homolog; AltNa... 46 6e-04
AM920427_1304(AM920427|pid:none) Penicillium chrysogenum Wiscons... 46 6e-04
Y13726_1(Y13726|pid:none) Arabidopsis thaliana mRNA for Hap5a tr... 45 0.001
CP001141_127(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1... 45 0.002
AM426904_1(AM426904|pid:none) Vitis vinifera contig VV78X251901.... 44 0.002
DQ000542_1(DQ000542|pid:none) Synthetic construct clone PSF:1084... 44 0.002
(Q2YDP3) RecName: Full=Dr1-associated corepressor; AltName: Full... 44 0.002
(Q9D6N5) RecName: Full=Dr1-associated corepressor; AltName: Full... 44 0.002
(A0JPP1) RecName: Full=Dr1-associated corepressor; AltName: Full... 44 0.002
(Q14919) RecName: Full=Dr1-associated corepressor; AltName: Full... 44 0.002
AL844509_576(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.004
BC089144_1(BC089144|pid:none) Xenopus laevis hypothetical protei... 43 0.006
AM502252_201(AM502252|pid:none) Leishmania infantum chromosome 34. 43 0.006
BT045428_1(BT045428|pid:none) Salmo salar clone ssal-rgf-521-095... 42 0.011
FM992691_236(FM992691|pid:none) Candida dubliniensis CD36 chromo... 42 0.014
FN314662_1(FN314662|pid:none) Schistosoma japonicum isolate Anhu... 41 0.024
U41843_1(U41843|pid:none) Human Dr1-associated corepressor (DRAP... 40 0.031
(P27344) RecName: Full=DNA polymerase epsilon subunit C; ... 40 0.041
CP000589_64(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ... 40 0.041
X58500_1(X58500|pid:none) Yeast DPB3 gene for subunit C of DNA p... 40 0.041
AE013599_3462(AE013599|pid:none) Drosophila melanogaster chromos... 40 0.053
AF302258_1(AF302258|pid:none) Drosophila melanogaster NC2alpha m... 40 0.053
(P40096) RecName: Full=Negative cofactor 2 complex subunit alpha... 40 0.053
BT080472_1(BT080472|pid:none) Caligus clemensi clone ccle-evs-50... 39 0.070
CR380955_369(CR380955|pid:none) Candida glabrata strain CBS138 c... 39 0.091
AL590450_147(AL590450|pid:none) chromosome XI of strain GB-M1 of... 39 0.091
FN357621_2(FN357621|pid:none) Schistosoma mansoni genome sequenc... 39 0.12
CU928174_478(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 38 0.20
AP003546_14(AP003546|pid:none) Oryza sativa Japonica Group genom... 37 0.35
CR380956_216(CR380956|pid:none) Candida glabrata strain CBS138 c... 35 1.0
AP003205_14(AP003205|pid:none) Oryza sativa Japonica Group genom... 35 1.0
AP008207_1233(AP008207|pid:none) Oryza sativa (japonica cultivar... 35 1.0
AK242136_1(AK242136|pid:none) Oryza sativa Japonica Group cDNA, ... 35 1.7
CP000254_160(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 33 3.8
CU928175_295(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 33 6.5
AL606904_3(AL606904|pid:none) Mouse DNA sequence from clone RP23... 32 8.5
AK156353_1(AK156353|pid:none) Mus musculus activated spleen cDNA... 32 8.5
CP000254_352(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 32 8.5

>AM920436_1017(AM920436|pid:none) Penicillium chrysogenum Wisconsin
54-1255 complete genome, contig Pc00c21.
Length = 189

Score = 74.7 bits (182), Expect = 1e-12
Identities = 39/88 (44%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Frame = +1

Query: 244 VEGDIQLPVARIKRIMRCDKDVKIISSDAVMLVAKST--EMFLDYLVKEAY---KSSGK- 405
+ G LP+ARIK+I++ D+D+ S++A ++A +T EMF+ YL ++ + KS K
Sbjct: 12 ITGQSALPIARIKKIIQLDEDIVQCSNNATFVIAMATIQEMFIQYLAEQGHNVVKSERKP 71

Query: 406 KKTLQYKDLASTIKGVDNLDFLSEIIPE 489
+KT+QYKDLAS + DNL+FLS++IP+
Sbjct: 72 RKTVQYKDLASAVSHTDNLEFLSDVIPK 99

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 385,209,069
Number of extensions: 4660849
Number of successful extensions: 10858
Number of sequences better than 10.0: 176
Number of HSP's gapped: 10734
Number of HSP's successfully gapped: 176
Length of query: 185
Length of database: 1,040,966,779
Length adjustment: 121
Effective length of query: 64
Effective length of database: 653,248,294
Effective search space: 41807890816
Effective search space used: 41807890816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.31 gvh: -0.22 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U05795-1 is nuc

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0