Contig-U05795-1 |
Contig ID |
Contig-U05795-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
555 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
2208760 |
End point |
2209261 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
3 |
Number of EST |
4 |
Link to clone list |
U05795 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11. 6 |
Homology vs DNA |
Query= Contig-U05795-1 (Contig-U05795-1Q) /CSM_Contig/Contig-U05795-1Q.Seq.d (555 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU270440) Dictyostelium discoideum vegetative cDNA clone:VS... 583 e-174 2 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 345 e-163 3 (C93685) Dictyostelium discoideum slug cDNA, clone SSL604. 559 e-158 2 (AU266821) Dictyostelium discoideum vegetative cDNA clone:VS... 412 e-122 2 (AU270441) Dictyostelium discoideum vegetative cDNA clone:VS... 333 4e-87 1 (AU061919) Dictyostelium discoideum slug cDNA, clone SLG608. 54 0.005 1 (BJ348184) Dictyostelium discoideum cDNA clone:dda32n11, 3' ... 54 0.005 1 (V00705) Yeast mitochondrial var1 gene (allele 40.0) a ribos... 32 0.021 4 (EF079662) Salmo salar tumor necrosis factor alpha mRNA, com... 52 0.021 1 (DW572137) EST_ssal_rgb2_36556 rgb2 Salmo salar cDNA clone s... 52 0.021 1 (DR696012) SMT7-0024 Atlantic Salmon macrophage - Aeromonas ... 52 0.021 1 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.024 9 (CE176137) tigr-gss-dog-17000326728507 Dog Library Canis lup... 46 0.026 2 (DU939592) 371806 Tomato EcoRI BAC Library Solanum lycopersi... 42 0.051 2 (EY323846) CAWX9613.rev CAWX Helobdella robusta Primary Earl... 36 0.066 2 (AF266067) Brachytron pratense large subunit ribosomal RNA g... 44 0.070 2 (CT573252) Zebrafish DNA sequence from clone CH211-111E20 in... 50 0.085 1 (BX323858) Zebrafish DNA sequence from clone DKEY-102F10 in ... 50 0.085 1 (BX294162) Zebrafish DNA sequence from clone CH211-270C5 in ... 50 0.085 1 (AL929512) Zebrafish DNA sequence from clone CH211-1L10 in l... 50 0.085 1 (BV627313) S215P60036FH5.T0 Clara Pan troglodytes troglodyte... 50 0.085 1 (AC159879) Mus musculus BAC clone RP24-497H22 from chromosom... 50 0.085 1 (AC147187) Pan troglodytes clone CH251-116A11, complete sequ... 50 0.085 1 (AC146115) Pan troglodytes BAC clone RP43-38M17 from chromos... 50 0.085 1 (L43277) Echium russicum clone russ.ab.s gene, trnT(UGU)-trn... 50 0.085 1 (L33355) Echium russicum Gmel. chloroplast trnT(UGU)-trnL(UA... 50 0.085 1 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 50 0.085 1 (AC107215) Homo sapiens BAC clone RP11-433C15 from 2, comple... 50 0.085 1 (AC084872) Homo sapiens BAC clone RP11-702N14 from 7, comple... 50 0.085 1 (AC158866) Bos taurus clone CH240-126F16, WORKING DRAFT SEQU... 50 0.085 1 (AC151160) Bos taurus clone CH240-471L21, WORKING DRAFT SEQU... 50 0.085 1 (AC140691) Rattus norvegicus clone CH230-131M8, WORKING DRAF... 50 0.085 1 (CU915471) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.085 1 (CU466293) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.085 1 (AC211605) Oryza glaberrima clone OG_BBa0042A24, *** SEQUENC... 50 0.085 1 (AC210455) Oryza glaberrima clone OG_BBa0020J03, *** SEQUENC... 50 0.085 1 (AC163461) Bos taurus clone CH240-135N22, *** SEQUENCING IN ... 50 0.085 1 (AC024977) Homo sapiens chromosome 2 clone RP11-433C15 map 2... 50 0.085 1 (AQ828809) HS_5262_A1_E11_T7A RPCI-11 Human Male BAC Library... 50 0.085 1 (ED150414) AUAC-aav41e08.g1 Ascaris suum whole genome shotgu... 50 0.085 1 (CT473130) Sus scrofa genomic clone CH242-427N10, genomic su... 50 0.085 1 (CE592236) tigr-gss-dog-17000366512511 Dog Library Canis lup... 50 0.085 1 (BZ230701) CH230-527H22.TJ CHORI-230 Segment 2 Rattus norveg... 50 0.085 1 (BX159188) Danio rerio genomic clone DKEY-147J3, genomic sur... 50 0.085 1 (AU284790) Dictyostelium discoideum gamete cDNA clone:FC-BL0... 50 0.085 1 (AU284757) Dictyostelium discoideum gamete cDNA clone:FC-BJ2... 50 0.085 1 (CD242111) AGENCOURT_14122590 NIH_MGC_187 Homo sapiens cDNA ... 50 0.085 1 (BJ335048) Dictyostelium discoideum cDNA clone:dda48a21, 5' ... 50 0.085 1 (BJ332189) Dictyostelium discoideum cDNA clone:dda38c11, 5' ... 50 0.085 1 (BJ331865) Dictyostelium discoideum cDNA clone:dda37h12, 5' ... 50 0.085 1 (BJ330607) Dictyostelium discoideum cDNA clone:dda32k05, 5' ... 50 0.085 1 (BJ330448) Dictyostelium discoideum cDNA clone:dda31h18, 5' ... 50 0.085 1 (BX004822) Zebrafish DNA sequence from clone DKEY-18F18. 40 0.095 7 (DY682837) TTEAH27THC Tetrahymena thermophila EST library, c... 46 0.12 2 (CX581123) TTE00017319 Amplicon Express - Conjugative Form T... 46 0.13 2 (U49822) Saccharomyces douglasii mitochondrial tRNA-Ser and ... 32 0.13 4 (AC196671) Rhesus Macaque BAC CH250-243C8 () complete seque... 48 0.14 2 (BX255949) Zebrafish DNA sequence from clone DKEY-76F5 in li... 46 0.14 3 (EJ196832) 1092344246623 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.17 2 (AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.23 7 (CR925881) Zebrafish DNA sequence from clone DKEY-104F13 in ... 48 0.30 2 (AC149637) Medicago truncatula clone mth2-181h2, complete se... 40 0.32 2 (CT955969) Zebrafish DNA sequence from clone DKEYP-74F12 in ... 48 0.34 1 (CR854832) Zebrafish DNA sequence from clone DKEY-96J22 in l... 48 0.34 1 (CR847506) Zebrafish DNA sequence from clone CH211-225N13 in... 48 0.34 1 (CR388183) Zebrafish DNA sequence from clone DKEY-27P12. 48 0.34 1 (BX571705) Zebrafish DNA sequence from clone DKEY-261E22 in ... 48 0.34 1 (BX537346) Zebrafish DNA sequence from clone DKEYP-2A6 in li... 48 0.34 1 (AL929306) Zebrafish DNA sequence from clone CH211-145C5 in ... 48 0.34 1 (BN000073) TPA: Homo sapiens lymphocyte-specific protein tyr... 48 0.34 1 (BS000663) Pan troglodytes chromosome Y clone: PTB-620F03. 48 0.34 1 (BS000653) Pan troglodytes chromosome Y clone:PTB-017B13, co... 48 0.34 1 (BS000601) Pan troglodytes chromosome Y clone:PTB-291L09, co... 48 0.34 1 (AC196698) Rhesus Macaque BAC CH250-329E22 () complete sequ... 48 0.34 1 (AC149095) Pan troglodytes BAC clone CH251-141L12 from Y, co... 48 0.34 1 (AC146209) Pan troglodytes BAC clone CH251-375D6 from Y, com... 48 0.34 1 (DD164637) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 48 0.34 1 (CS468876) Sequence 67 from Patent EP1748080. 48 0.34 1 (CS468875) Sequence 66 from Patent EP1748080. 48 0.34 1 (CS419353) Sequence 67 from Patent WO2006094836. 48 0.34 1 (CS419352) Sequence 66 from Patent WO2006094836. 48 0.34 1 (AX695857) Sequence 1484 from Patent WO03008583. 48 0.34 1 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 48 0.34 1 (AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 48 0.34 1 (AL121991) Human DNA sequence from clone RP4-675E8 on chromo... 48 0.34 1 (AC098872) Homo sapiens BAC clone RP11-773P9 from 2, complet... 48 0.34 1 (AC092266) Homo sapiens chromosome 5 clone RP11-24P24, compl... 48 0.34 1 (AC026709) Homo sapiens chromosome 5 clone CTD-2084I18, comp... 48 0.34 1 (AC160215) Atelerix albiventris clone LB4-204M24, WORKING DR... 48 0.34 1 (AC157852) Atelerix albiventris clone LB4-260B7, WORKING DRA... 48 0.34 1 (AC157851) Atelerix albiventris clone LB4-16J17, WORKING DRA... 48 0.34 1 (AC112366) Rattus norvegicus clone CH230-113E13, *** SEQUENC... 48 0.34 1 (AC111974) Rattus norvegicus clone CH230-268E11, WORKING DRA... 48 0.34 1 (CU928348) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.34 1 (CU856643) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.34 1 (CR940348) Theileria annulata genomic DNA chromosome 2. 48 0.34 1 (CR925878) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.34 1 (CR925729) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.34 1 (AC222975) Bos taurus clone CH240-433I21, WORKING DRAFT SEQU... 48 0.34 1 (AC194277) Zea mays chromosome 7 clone CH201-282I17; ZMMBBc0... 48 0.34 1
>(AU270440) Dictyostelium discoideum vegetative cDNA clone:VSJ765, 5' end single read. Length = 556
Score = 583 bits (294), Expect(2) = e-174 Identities = 294/294 (100%) Strand = Plus / Plus
Query: 235 cgtacacgtgttgaaggtgatattcaattaccagttgcaagaattaaaagaataatgaga 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 cgtacacgtgttgaaggtgatattcaattaccagttgcaagaattaaaagaataatgaga 294
Query: 295 tgtgataaagatgttaaaataatttcttctgatgctgttatgttagttgcaaaatcgact 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 tgtgataaagatgttaaaataatttcttctgatgctgttatgttagttgcaaaatcgact 354
Query: 355 gaaatgtttttagattatttagtcaaagaagcatataaatcaagtggcaaaaagaagact 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 gaaatgtttttagattatttagtcaaagaagcatataaatcaagtggcaaaaagaagact 414
Query: 415 ttacaatataaagatttagcttcaacaattaaaggtgtagataatttagactttttatca 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 ttacaatataaagatttagcttcaacaattaaaggtgtagataatttagactttttatca 474
Query: 475 gagattatacctgaaaaagtttcaatataataatatagtaataatatttataat 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 gagattatacctgaaaaagtttcaatataataatatagtaataatatttataat 528
Score = 67.9 bits (34), Expect(2) = e-174 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 1 caaataaattaaataaataaattaaagatggtta 34 |||||||||||||||||||||||||||||||||| Sbjct: 1 caaataaattaaataaataaattaaagatggtta 34
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 510,375,162 Number of extensions: 39799540 Number of successful extensions: 5917977 Number of sequences better than 10.0: 1246 Length of query: 555 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 532 Effective length of database: 93,106,754,628 Effective search space: 49532793462096 Effective search space used: 49532793462096 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.20 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |