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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05786-1
Contig ID Contig-U05786-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05786-1 (Contig-U05786-1Q) /CSM_Contig/Contig-U05786-1Q.Seq.d
TTTTTAAAAAAATTNTTTTAAAAAAACTTTTTTGTTTTCTTTAAAAATTG
TTTCCTTAATTTTTTTAAAAAATTAATTAATTTAANTAATTGCGCTTAAA
TTTTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 196
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U05786
List of clone(s) 

est1=SSL563Z,1,197
Translated Amino Acid sequence 
f*knxfkktflfslkivsliflkn*li*XIALKFFSQKKKKKKKKKKKKKKKKKKKKKKK
KKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
flkkxf*knffvffkncflnffkklinlxnca*iffpkkkkkkkkkkkkkkkkkkkkkkk
kkkkk


Frame B:
f*knxfkktflfslkivsliflkn*li*XIALKFFSQKKKKKKKKKKKKKKKKKKKKKKK
KKKKK


Frame C:
fkkixlkklfcfl*klfp*ff*kin*fx*lrlnffpkkkkkkkkkkkkkkkkkkkkkkkk
kkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05786-1 (Contig-U05786-1Q)
/CSM_Contig/Contig-U05786-1Q.Seq.d
         (196 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05786-1 (Contig-U05786-1Q) /CSM_Contig/Conti...    82  2e-16
Contig-U06364-1 (Contig-U06364-1Q) /CSM_Contig/Conti...    36  0.013
Contig-U06210-1 (Contig-U06210-1Q) /CSM_Contig/Conti...    36  0.013
Contig-U01856-1 (Contig-U01856-1Q) /CSM_Contig/Conti...    36  0.013
Contig-U01842-1 (Contig-U01842-1Q) /CSM_Contig/Conti...    36  0.013
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti...    34  0.051
Contig-U11540-1 (Contig-U11540-1Q) /CSM_Contig/Conti...    34  0.051
Contig-U07176-1 (Contig-U07176-1Q) /CSM_Contig/Conti...    34  0.051
Contig-U14615-1 (Contig-U14615-1Q) /CSM_Contig/Conti...    32  0.20
Contig-U09511-1 (Contig-U09511-1Q) /CSM_Contig/Conti...    32  0.20

>Contig-U05786-1 (Contig-U05786-1Q) /CSM_Contig/Contig-U05786-1Q.Seq.d
          Length = 196

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                       
Query: 67  aaaaaattaattaatttaantaattgcgcttaaatttttttccc 110
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  aaaaaattaattaatttaantaattgcgcttaaatttttttccc 110


 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 70 aaattaattaattt 83
          ||||||||||||||
Sbjct: 83 aaattaattaattt 70


>Contig-U06364-1 (Contig-U06364-1Q) /CSM_Contig/Contig-U06364-1Q.Seq.d
          Length = 569

 Score = 36.2 bits (18), Expect = 0.013
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 67  aaaaaattaattaatttaantaatt 91
           ||||| ||||||||||||| |||||
Sbjct: 423 aaaaatttaattaatttaattaatt 447


 Score = 30.2 bits (15), Expect = 0.80
 Identities = 20/22 (90%)
 Strand = Plus / Minus

                                 
Query: 68  aaaaattaattaatttaantaa 89
           ||||||||||||| |||| |||
Sbjct: 450 aaaaattaattaaattaattaa 429


>Contig-U06210-1 (Contig-U06210-1Q) /CSM_Contig/Contig-U06210-1Q.Seq.d
          Length = 386

 Score = 36.2 bits (18), Expect = 0.013
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 68 aaaaattaattaatttaa 85
          ||||||||||||||||||
Sbjct: 37 aaaaattaattaatttaa 54


 Score = 28.2 bits (14), Expect = 3.2
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 70 aaattaattaattt 83
          ||||||||||||||
Sbjct: 52 aaattaattaattt 39


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2071
Number of Sequences: 6905
Number of extensions: 2071
Number of successful extensions: 877
Number of sequences better than 10.0: 96
length of query: 196
length of database: 5,674,871
effective HSP length: 15
effective length of query: 181
effective length of database: 5,571,296
effective search space: 1008404576
effective search space used: 1008404576
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2006. 3.27
Homology vs DNA 
Query= Contig-U05786-1 (Contig-U05786-1Q) /CSM_Contig/Contig-U05786-1Q.Seq.d
         (196 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum23.seq;
ddbjhum3.seq; ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq;
ddbjhum8.seq; ddbjhum9.seq; /db/DDBJNEW.DATA/a/new_ddbjhum.seq;
ddbjpri1.seq; ddbjpri2.seq; /db/DDBJNEW.DATA/a/new_ddbjpri.seq;
ddbjrod1.seq; ddbjrod10.seq; ddbjrod11.seq; ddbjrod12.seq;
ddbjrod13.seq; ddbjrod14.seq; ddbjrod15.seq; ddbjrod16.seq;
ddbjrod17.seq; ddbjrod18.seq; ddbjrod19.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq;
ddbjmam1.seq; ddbjmam2.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq;
ddbjvrt1.seq; ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq;
ddbjvrt6.seq; ddbjvrt7.seq; ddbjvrt8.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq; ddbjinv7.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln12.seq; ddbjpln13.seq; ddbjpln14.seq;
ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq;
ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct10.seq;
ddbjbct11.seq; ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq;
ddbjbct6.seq; ddbjbct7.seq; ddbjbct8.seq; ddbjbct9.seq;
/db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq;
ddbjvrl3.seq; ddbjvrl4.seq; /db/DDBJNEW.DATA/a/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
ddbjgss1.seq; ddbjgss10.seq; ddbjgss100.seq; ddbjgss101.seq;
ddbjgss102.seq; ddbjgss103.seq; ddbjgss104.seq; ddbjgss105.seq;
ddbjgss106.seq; ddbjgss107.seq; ddbjgss108.seq; ddbjgss109.seq;
ddbjgss11.seq; ddbjgss110.seq; ddbjgss111.seq; ddbjgss112.seq;
ddbjgss113.seq; ddbjgss114.seq; ddbjgss115.seq; ddbjgss116.seq;
ddbjgss117.seq; ddbjgss118.seq; ddbjgss119.seq; ddbjgss12.seq;
ddbjgss120.seq; ddbjgss121.seq; ddbjgss122.seq; ddbjgss123.seq;
ddbjgss124.seq; ddbjgss125.seq; ddbjgss126.seq; ddbjgss127.seq;
ddbjgss128.seq; ddbjgss129.seq; ddbjgss13.seq; ddbjgss130.seq;
ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq;
ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq;
ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq;
ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq;
ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq;
ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq;
ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq;
ddbjgss4.seq; ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq;
ddbjgss43.seq; ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq;
ddbjgss47.seq; ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq;
ddbjgss50.seq; ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq;
ddbjgss54.seq; ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq;
ddbjgss58.seq; ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq;
ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq;
ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq;
ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq;
ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq;
ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq; ddbjgss79.seq;
ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq; ddbjgss82.seq;
ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq; ddbjgss86.seq;
ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq; ddbjgss9.seq;
ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq; ddbjgss93.seq;
ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq; ddbjgss97.seq;
ddbjgss98.seq; ddbjgss99.seq; /db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg53.seq; ddbjhtg54.seq;
ddbjhtg55.seq; ddbjhtg56.seq; ddbjhtg57.seq; ddbjhtg58.seq;
ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg2.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg3.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat15.seq; ddbjpat16.seq; ddbjpat17.seq; ddbjpat18.seq;
ddbjpat19.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq; ddbjpat9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts10.seq;
ddbjsts11.seq; ddbjsts12.seq; ddbjsts2.seq; ddbjsts3.seq;
ddbjsts4.seq; ddbjsts5.seq; ddbjsts6.seq; ddbjsts7.seq; ddbjsts8.seq;
ddbjsts9.seq; /db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/a/new_est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; est_hum5.seq;
/db/DDBJNEW.DATA/a/new_est_hum1.seq;
/db/DDBJNEW.DATA/a/new_est_hum2.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq; est_rest6.seq;
est_rest7.seq; est_rest8.seq; /db/DDBJNEW.DATA/a/new_est_rest1.seq;
/db/DDBJNEW.DATA/a/new_est_rest2.seq
           52,358,998 sequences; 57,961,930,332 total letters

Searching...................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC078811|AC078811.9 Homo sapiens 3 BAC RP11-309H18 (Roswell ...    44   0.20   2
AL365174|AL365174.3 Human DNA sequence *** SEQUENCING CANCEL...    44   1.0    1
AC107522|AC107522.5 Rattus norvegicus clone CH230-169H13, **...    44   1.0    1
AL445235|AL445235.30 Human DNA sequence from clone RP1-65J11...    44   1.0    1
AL158825|AL158825.12 Human DNA sequence from clone RP11-197P...    44   1.0    1
CF076904|CF076904.1 QHK13O23.yg.ab1 QH_K sunflower H.paradox...    38   1.1    2
BB981808|BB981808.1 Plasmodium berghei strain ANKA cDNA clon...    34   1.4    2
DV017995|DV017995.1 CA6A10_T7 Diploptera punctata corpora al...    30   2.6    2
DV018158|DV018158.1 CA8E08_T7 Diploptera punctata corpora al...    30   2.6    2
DV018137|DV018137.1 CA8B12_T7 Diploptera punctata corpora al...    30   2.6    2
DV018157|DV018157.1 CA8E07_T7 Diploptera punctata corpora al...    30   2.6    2
DV018155|DV018155.1 CA8E04_T7 Diploptera punctata corpora al...    30   2.7    2
DV018148|DV018148.1 CA8D07_T7 Diploptera punctata corpora al...    30   2.7    2
DV017868|DV017868.1 CA4D02_T7 Diploptera punctata corpora al...    30   2.7    2
DV018144|DV018144.1 CA8C11_T7 Diploptera punctata corpora al...    30   2.7    2
DV018096|DV018096.1 CA7F07_T7 Diploptera punctata corpora al...    30   2.7    2
DV017977|DV017977.1 CA5G08_T7 Diploptera punctata corpora al...    30   2.7    2
DV018181|DV018181.1 CA8H06_T7 Diploptera punctata corpora al...    30   2.7    2
DV018086|DV018086.1 CA7E04_T7 Diploptera punctata corpora al...    30   2.7    2
DV018226|DV018226.1 CA9E07_T7 Diploptera punctata corpora al...    30   2.7    2
DV017990|DV017990.1 CA6A02_T7 Diploptera punctata corpora al...    30   2.7    2
DV018080|DV018080.1 CA7D07_T7 Diploptera punctata corpora al...    30   2.7    2
DV017982|DV017982.1 CA5H04_T7 Diploptera punctata corpora al...    30   2.7    2
DV018171|DV018171.1 CA8G04_T7 Diploptera punctata corpora al...    30   2.7    2
DV017921|DV017921.1 CA5A05_T7 Diploptera punctata corpora al...    30   2.7    2
DV018211|DV018211.1 CA9C08_T7 Diploptera punctata corpora al...    30   2.7    2
DV018209|DV018209.1 CA9C06_T7 Diploptera punctata corpora al...    30   2.7    2
DV017979|DV017979.1 CA5G12_T7 Diploptera punctata corpora al...    30   2.7    2
DV018084|DV018084.1 CA7D12_T7 Diploptera punctata corpora al...    30   2.7    2
DV018222|DV018222.1 CA9E01_T7 Diploptera punctata corpora al...    30   2.7    2
DV018193|DV018193.1 CA9A12_T7 Diploptera punctata corpora al...    30   2.7    2
DV018195|DV018195.1 CA9B02_T7 Diploptera punctata corpora al...    30   2.7    2
DV018083|DV018083.1 CA7D10_T7 Diploptera punctata corpora al...    30   2.7    2
DV018105|DV018105.1 CA7G06_T7 Diploptera punctata corpora al...    30   2.7    2
DV018065|DV018065.1 CA7B05_T7 Diploptera punctata corpora al...    30   2.7    2
DV018060|DV018060.1 CA7A09_T7 Diploptera punctata corpora al...    30   2.7    2
DV017974|DV017974.1 CA5G02_T7 Diploptera punctata corpora al...    30   2.7    2
DV017855|DV017855.1 CA4B08_T7 Diploptera punctata corpora al...    30   2.7    2
DV017984|DV017984.1 CA5H06_T7 Diploptera punctata corpora al...    30   2.7    2
DV018233|DV018233.1 CA9F06_T7 Diploptera punctata corpora al...    30   2.7    2
DV018239|DV018239.1 CA9G03_T7 Diploptera punctata corpora al...    30   2.7    2
DV017852|DV017852.1 CA4B03_T7 Diploptera punctata corpora al...    30   2.7    2
DV017849|DV017849.1 CA4A09_PCM13F Diploptera punctata corpor...    30   2.7    2
DV018235|DV018235.1 CA9F08_T7 Diploptera punctata corpora al...    30   2.7    2
DV017882|DV017882.1 CA4E06_T7 Diploptera punctata corpora al...    30   2.7    2
DV017895|DV017895.1 CA4F06_T7 Diploptera punctata corpora al...    30   2.7    2
DV017592|DV017592.1 CA1A02_T7 Diploptera punctata corpora al...    30   2.7    2
DV018227|DV018227.1 CA9E10_T7 Diploptera punctata corpora al...    30   2.7    2
DV017987|DV017987.1 CA5H09_T7 Diploptera punctata corpora al...    30   2.7    2
DV017865|DV017865.1 CA4C11_T7 Diploptera punctata corpora al...    30   2.7    2
DV018003|DV018003.1 CA6B12_T7 Diploptera punctata corpora al...    30   2.7    2
DV017860|DV017860.1 CA4C06_T7 Diploptera punctata corpora al...    30   2.7    2
DV018127|DV018127.1 CA8A10_T7 Diploptera punctata corpora al...    30   2.7    2
DV018112|DV018112.1 CA7H02_T7 Diploptera punctata corpora al...    30   2.7    2
DV017887|DV017887.1 CA4E11_T7 Diploptera punctata corpora al...    30   2.7    2
DV017929|DV017929.1 CA5B03_T7 Diploptera punctata corpora al...    30   2.7    2
DV018237|DV018237.1 CA9G01_T7 Diploptera punctata corpora al...    30   2.7    2
DV017856|DV017856.1 CA4B11_T7 Diploptera punctata corpora al...    30   2.7    2
DV018234|DV018234.1 CA9F07_T7 Diploptera punctata corpora al...    30   2.7    2
DV017986|DV017986.1 CA5H08_T7 Diploptera punctata corpora al...    30   2.7    2
DV018079|DV018079.1 CA7D06_T7 Diploptera punctata corpora al...    30   2.7    2
DV017898|DV017898.1 CA4F10_T7 Diploptera punctata corpora al...    30   2.7    2
DV017850|DV017850.1 CA4B01_T7 Diploptera punctata corpora al...    30   2.7    2
DV018027|DV018027.1 CA6E08_T7 Diploptera punctata corpora al...    30   2.7    2
DV018022|DV018022.1 CA6E03_T7 Diploptera punctata corpora al...    30   2.7    2
DV017820|DV017820.1 CA3F10_T7 Diploptera punctata corpora al...    30   2.7    2
DV018232|DV018232.1 CA9F05_T7 Diploptera punctata corpora al...    30   2.7    2
DV018017|DV018017.1 CA6D09_T7 Diploptera punctata corpora al...    30   2.7    2
DV018212|DV018212.1 CA9C10_T7 Diploptera punctata corpora al...    30   2.7    2
DV018070|DV018070.1 CA7C03_T7 Diploptera punctata corpora al...    30   2.7    2
DV017953|DV017953.1 CA5D07_T7 Diploptera punctata corpora al...    30   2.7    2
DV017597|DV017597.1 CA1A09_T7 Diploptera punctata corpora al...    30   2.7    2
DV018219|DV018219.1 CA9D09_T7 Diploptera punctata corpora al...    30   2.7    2
DV017997|DV017997.1 CA6B02_T7 Diploptera punctata corpora al...    30   2.7    2
DV018039|DV018039.1 CA6F12_T7 Diploptera punctata corpora al...    30   2.7    2
DV018025|DV018025.1 CA6E06_T7 Diploptera punctata corpora al...    30   2.7    2
DV017635|DV017635.1 CA1E03_T7 Diploptera punctata corpora al...    30   2.7    2
DV017906|DV017906.1 CA4G09_T7 Diploptera punctata corpora al...    30   2.7    2
DV018028|DV018028.1 CA6E09_T7 Diploptera punctata corpora al...    30   2.7    2
DV018010|DV018010.1 CA6D01_T7 Diploptera punctata corpora al...    30   2.7    2
DV018123|DV018123.1 CA8A03_T7 Diploptera punctata corpora al...    30   2.7    2
DV017655|DV017655.1 CA1G04_T7 Diploptera punctata corpora al...    30   2.7    2
DV017633|DV017633.1 CA1D12_T7 Diploptera punctata corpora al...    30   2.7    2
DV018037|DV018037.1 CA6F08_T7 Diploptera punctata corpora al...    30   2.7    2
DV017660|DV017660.1 CA1G11_T7 Diploptera punctata corpora al...    30   2.7    2
DV018072|DV018072.1 CA7C05_T7 Diploptera punctata corpora al...    30   2.7    2
DV017727|DV017727.1 CA2F01_T7 Diploptera punctata corpora al...    30   2.7    2
DV018356|DV018356.1 CA10D01 Diploptera punctata corpora alla...    30   2.7    2
DV017783|DV017783.1 CA3C12_T7 Diploptera punctata corpora al...    30   2.7    2
DV018016|DV018016.1 CA6D08_T7 Diploptera punctata corpora al...    30   2.7    2
DV017762|DV017762.1 CA3A04_T7 Diploptera punctata corpora al...    30   2.7    2
DV017665|DV017665.1 CA1H04_T7 Diploptera punctata corpora al...    30   2.7    2
DV017620|DV017620.1 CA1C09_T7 Diploptera punctata corpora al...    30   2.7    2
DV018187|DV018187.1 CA9A02_T7 Diploptera punctata corpora al...    30   2.7    2
DV017837|DV017837.1 CA3H06_T7 Diploptera punctata corpora al...    30   2.7    2
DV017818|DV017818.1 CA3F08_T7 Diploptera punctata corpora al...    30   2.7    2
DV017618|DV017618.1 CA1C06_T7 Diploptera punctata corpora al...    30   2.7    2
DV017765|DV017765.1 CA3B01_T7 Diploptera punctata corpora al...    30   2.7    2
DV017595|DV017595.1 CA1A08_PCM13F Diploptera punctata corpor...    30   2.7    2
DV018008|DV018008.1 CA6C10_T7 Diploptera punctata corpora al...    30   2.7    2

>AC078811|AC078811.9 Homo sapiens 3 BAC RP11-309H18 (Roswell Park Cancer
             Institute HumanBAC Library) complete sequence.
          Length = 72521

 Score = 44.1 bits (22), Expect(2) = 0.20
 Identities = 24/25 (96%)
 Strand = Plus / Minus


Query: 68    aaaaattaattaatttaantaattg 92
             |||||||||||||||||| ||||||
Sbjct: 37648 aaaaattaattaatttaaataattg 37624

 Score = 30.2 bits (15), Expect(2) = 0.20
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 96    ttaaatttttttccc 110
             |||||||||||||||
Sbjct: 27011 ttaaatttttttccc 26997

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 4,070,120
Number of Sequences: 52358998
Number of extensions: 4070120
Number of successful extensions: 1628633
Number of sequences better than 10.0: 473
length of query: 196
length of database: 57,961,930,332
effective HSP length: 22
effective length of query: 174
effective length of database: 56,810,032,376
effective search space: 9884945633424
effective search space used: 9884945633424
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING:  [000.000]  Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U05786-1 (Contig-U05786-1Q) /CSM_Contig/Contig-U05786-1Q.Seq.d
         (196 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 48,221,485
Number of extensions: 233995
Number of successful extensions: 9
Number of sequences better than 10.0: 0
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 0
Length of query: 65
Length of database: 1,040,966,779
Length adjustment: 37
Effective length of query: 28
Effective length of database: 922,408,234
Effective search space: 25827430552
Effective search space used: 25827430552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)
PSORT 

 psg: 0.03  gvh: -0.16  alm: 0.86  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 3.13  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U05786-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0