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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05779-1
Contig ID Contig-U05779-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05779-1 (Contig-U05779-1Q) /CSM_Contig/Contig-U05779-1Q.Seq.d
TTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAACCCTTTAAACTT
CCCNTTACCCAAGTTTATTTTNAATTTAAAATTTTTTTTTAAAATTGGTT
TTTAATTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 181
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U05779
List of clone(s) 

est1=SSL522Z,1,182
Translated Amino Acid sequence 
FFFFLKKKKKKKNPLNFPLPKFIXNLKFFFKIGF*fflkkkkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
FFFFLKKKKKKKNPLNFPLPKFIXNLKFFFKIGF*fflkkkkkkkkkkkkkkkkkkkkkk


Frame B:
ffff*kkkkkkktl*tsxypslfxi*nfflklvfnff*kkkkkkkkkkkkkkkkkkkkkk


Frame C:
ffffkkkkkkkkpfklpxtqvyfxfkiff*nwfliffkkkkkkkkkkkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05779-1 (Contig-U05779-1Q)
/CSM_Contig/Contig-U05779-1Q.Seq.d
         (181 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05779-1 (Contig-U05779-1Q) /CSM_Contig/Conti...    84  6e-17
Contig-U09376-1 (Contig-U09376-1Q) /CSM_Contig/Conti...    38  0.003
Contig-U06756-1 (Contig-U06756-1Q) /CSM_Contig/Conti...    38  0.003
Contig-U09797-1 (Contig-U09797-1Q) /CSM_Contig/Conti...    32  0.19
Contig-U09334-1 (Contig-U09334-1Q) /CSM_Contig/Conti...    32  0.19
Contig-U05477-1 (Contig-U05477-1Q) /CSM_Contig/Conti...    32  0.19
Contig-U01724-1 (Contig-U01724-1Q) /CSM_Contig/Conti...    32  0.19
Contig-U14732-1 (Contig-U14732-1Q) /CSM_Contig/Conti...    30  0.74
Contig-U14633-1 (Contig-U14633-1Q) /CSM_Contig/Conti...    30  0.74
Contig-U12035-1 (Contig-U12035-1Q) /CSM_Contig/Conti...    30  0.74

>Contig-U05779-1 (Contig-U05779-1Q) /CSM_Contig/Contig-U05779-1Q.Seq.d
          Length = 181

 Score = 83.8 bits (42), Expect = 6e-17
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                       
Query: 39  ccctttaaacttcccnttacccaagtttattttnaatttaaaannnnnnnnnaaaattgg 98
           |||||||||||||||||||||||||||||||||||||||||||         ||||||||
Sbjct: 39  ccctttaaacttcccnttacccaagtttattttnaatttaaaatttttttttaaaattgg 98

                          
Query: 99  tttttaatttttttt 113
           |||||||||||||||
Sbjct: 99  tttttaatttttttt 113


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 175 tttttttttttttt 162


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 174 tttttttttttttt 161


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 141 tttttttttttttt 128


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 33 tttttttttttttt 20


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 177 tttttttttttttt 164


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 142 tttttttttttttt 129


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 29 tttttttttttttt 16


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 38 tttttttttttttt 25


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 138 tttttttttttttt 125


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 137 tttttttttttttt 124


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 136 tttttttttttttt 123


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 36 tttttttttttttt 23


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 167 tttttttttttttt 154


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 34 tttttttttttttt 21


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 143 tttttttttttttt 130


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 130 tttttttttttttt 117


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 129 tttttttttttttt 116


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 128 tttttttttttttt 115


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 127 tttttttttttttt 114


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 32 tttttttttttttt 19


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 31 tttttttttttttt 18


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 134 tttttttttttttt 121


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 133 tttttttttttttt 120


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 132 tttttttttttttt 119


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 37 tttttttttttttt 24


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 28 tttttttttttttt 15


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 169 tttttttttttttt 156


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 146 tttttttttttttt 133


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 131 tttttttttttttt 118


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 30 tttttttttttttt 17


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 1  tttttttttttttt 14


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 140 tttttttttttttt 127


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 139 tttttttttttttt 126


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 179 tttttttttttttt 166


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 176 tttttttttttttt 163


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 144 tttttttttttttt 131


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 171 tttttttttttttt 158


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 150 tttttttttttttt 137


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 149 tttttttttttttt 136


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 148 tttttttttttttt 135


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 147 tttttttttttttt 134


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 154 tttttttttttttt 141


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 153 tttttttttttttt 140


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 152 tttttttttttttt 139


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 151 tttttttttttttt 138


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 158 tttttttttttttt 145


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 157 tttttttttttttt 144


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 156 tttttttttttttt 143


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 155 tttttttttttttt 142


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 162 tttttttttttttt 149


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 161 tttttttttttttt 148


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 160 tttttttttttttt 147


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 159 tttttttttttttt 146


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 166 tttttttttttttt 153


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 165 tttttttttttttt 152


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 164 tttttttttttttt 151


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 163 tttttttttttttt 150


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 35 tttttttttttttt 22


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 170 tttttttttttttt 157


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 168 tttttttttttttt 155


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 145 tttttttttttttt 132


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 180 tttttttttttttt 167


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 173 tttttttttttttt 160


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 135 tttttttttttttt 122


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 178 tttttttttttttt 165


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 181 tttttttttttttt 168


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 172 tttttttttttttt 159


>Contig-U09376-1 (Contig-U09376-1Q) /CSM_Contig/Contig-U09376-1Q.Seq.d
          Length = 889

 Score = 38.2 bits (19), Expect = 0.003
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 95  ttggtttttaatttttttt 113
           |||||||||||||||||||
Sbjct: 69  ttggtttttaatttttttt 87


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 56 tttttttttttttt 43


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 99  tttttaattttttt 112
           ||||||||||||||
Sbjct: 83  tttttaattttttt 96


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 62 tttttttttttttt 49


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 59 tttttttttttttt 46


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 63 tttttttttttttt 50


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 60 tttttttttttttt 47


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 58 tttttttttttttt 45


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 240 tttttttttttttt 227


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 57 tttttttttttttt 44


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 61 tttttttttttttt 48


>Contig-U06756-1 (Contig-U06756-1Q) /CSM_Contig/Contig-U06756-1Q.Seq.d
          Length = 336

 Score = 38.2 bits (19), Expect = 0.003
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 95  ttggtttttaatttttttt 113
           |||||||||||||||||||
Sbjct: 60  ttggtttttaatttttttt 42


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 251 tttttttttttttt 238


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 250 tttttttttttttt 237


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 302 tttttttttttttt 289


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 303 tttttttttttttt 290


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 322 tttttttttttttt 309


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 264 tttttttttttttt 277


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 1   tttttttttttttt 14
           ||||||||||||||
Sbjct: 323 tttttttttttttt 310


 Score = 28.2 bits (14), Expect = 2.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  tttttttttttttt 14
          ||||||||||||||
Sbjct: 49 tttttttttttttt 36


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,284
Number of Sequences: 6905
Number of extensions: 88284
Number of successful extensions: 68556
Number of sequences better than 10.0: 2491
length of query: 181
length of database: 5,674,871
effective HSP length: 15
effective length of query: 166
effective length of database: 5,571,296
effective search space: 924835136
effective search space used: 924835136
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11. 6
Homology vs DNA 
Query= Contig-U05779-1 (Contig-U05779-1Q) /CSM_Contig/Contig-U05779-1Q.Seq.d
         (181 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038818) Dictyostelium discoideum slug cDNA, clone SSL522.       44   1.6    1

>(AU038818) Dictyostelium discoideum slug cDNA, clone SSL522.
          Length = 182

 Score = 44.1 bits (22), Expect = 1.6
 Identities = 25/25 (100%)
 Strand = Plus / Plus


Query: 39 ccctttaaacttcccnttacccaag 63
          |||||||||||||||||||||||||
Sbjct: 39 ccctttaaacttcccnttacccaag 63

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 10,862,417
Number of extensions: 458457
Number of successful extensions: 59754
Number of sequences better than 10.0: 1
Length of query: 181
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 159
Effective length of database: 93,199,600,587
Effective search space: 14818736493333
Effective search space used: 14818736493333
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U05779-1 (Contig-U05779-1Q) /CSM_Contig/Contig-U05779-1Q.Seq.d
         (181 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 18,100,245
Number of extensions: 44001
Number of successful extensions: 6
Number of sequences better than 10.0: 0
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 0
Length of query: 60
Length of database: 1,040,966,779
Length adjustment: 0
Effective length of query: 60
Effective length of database: 1,040,966,779
Effective search space:        0
Effective search space used:        0
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)
PSORT 

 psg: 0.66  gvh: 0.06  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.28  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U05779-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0