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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05718-1
Contig ID Contig-U05718-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05718-1 (Contig-U05718-1Q) /CSM_Contig/Contig-U05718-1Q.Seq.d
GTAATAATGAATAGAGCAAAAGTTTTATCTAGCTATTTAGGTTTATTAAG
AACAGAGAAAAAGGTATTTCAAAATGATAAAAGAGCACTTGAACATGTAA
TCAATTTAACAAGAGTTCAATTTAGAGATAATAAAAATGAAACAGATAAT
ACAAAAATTAATGAAATGATAGATCATGCAAATGCTGTCTCTCATTTTTT
AGTTAAAGATTTAATTCAAGGTGTTAGAAAAGATGAAAAAACCATTCAAC
TTAAATTTGATGAAAATACAAAGTCATACCAACAATATGAATTTGTAAAT
GATCAACCACCACAAAGAAAAAAGAGAGGAAAGATTCAAATTGATGATGA
ACAACCAACTACTTGTTGTGGTGGTGGTTGTGGTAAACCAATGCCTTCAA
ATAATTCTGAAAAATCAACTTGTTCATAAAATTCAAATTTTAATAGTAAA
TAATAATATTAATAAAAAAAAAAAAAAAAGCGATAGAAAAAAAAGAAAAA
AAAAAAATA
Gap no gap
Contig length 509
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3732590
End point 3732081
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U05718
List of clone(s) 

est1=SSK818E,1,510
est2=VSH892F,1,505
est3=VSH892Z,122,261
Translated Amino Acid sequence 
VIMNRAKVLSSYLGLLRTEKKVFQNDKRALEHVINLTRVQFRDNKNETDNTKINEMIDHA
NAVSHFLVKDLIQGVRKDEKTIQLKFDENTKSYQQYEFVNDQPPQRKKRGKIQIDDEQPT
TCCGGGCGKPMPSNNSEKSTCS*nsnfnsk**y**kkkkkr*kkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
VIMNRAKVLSSYLGLLRTEKKVFQNDKRALEHVINLTRVQFRDNKNETDNTKINEMIDHA
NAVSHFLVKDLIQGVRKDEKTIQLKFDENTKSYQQYEFVNDQPPQRKKRGKIQIDDEQPT
TCCGGGCGKPMPSNNSEKSTCS*nsnfnsk**y**kkkkkr*kkkkkkk


Frame B:
***ieqkfylai*vy*eqrkryfkmikehlnm*si*qefnleiikmkqiiqklmk**imq
mlslif*lki*fkvlekmkkpfnlnlmkiqshtnnmnl*minhhkekreerfklmmnnql
lvvvvvvvnqclqiilknqlvhkiqilivnnninkkkkksdrkkrkkkn


Frame C:
nne*sksfi*lfrfiknrekgisk**kst*tcnqfnkssi*r**k*nr*ykn**ndrsck
cclsffs*rfnsrc*kr*knhst*i**kykvipti*ick*stttkkkerkdsn***ttny
llwwwlw*tnafk*f*kinlfikfkf***iiilikkkkkaiekkekkki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05718-1 (Contig-U05718-1Q)
/CSM_Contig/Contig-U05718-1Q.Seq.d
         (509 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05718-1 (Contig-U05718-1Q) /CSM_Contig/Conti...   918  0.0
Contig-U12293-1 (Contig-U12293-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U12169-1 (Contig-U12169-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U08718-1 (Contig-U08718-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U14746-1 (Contig-U14746-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U00447-1 (Contig-U00447-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U13673-1 (Contig-U13673-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12710-1 (Contig-U12710-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11776-1 (Contig-U11776-1Q) /CSM_Contig/Conti...    38  0.009

>Contig-U05718-1 (Contig-U05718-1Q) /CSM_Contig/Contig-U05718-1Q.Seq.d
          Length = 509

 Score =  918 bits (463), Expect = 0.0
 Identities = 463/463 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaataatgaatagagcaaaagttttatctagctatttaggtttattaagaacagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtaataatgaatagagcaaaagttttatctagctatttaggtttattaagaacagagaaa 60

                                                                       
Query: 61  aaggtatttcaaaatgataaaagagcacttgaacatgtaatcaatttaacaagagttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaggtatttcaaaatgataaaagagcacttgaacatgtaatcaatttaacaagagttcaa 120

                                                                       
Query: 121 tttagagataataaaaatgaaacagataatacaaaaattaatgaaatgatagatcatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttagagataataaaaatgaaacagataatacaaaaattaatgaaatgatagatcatgca 180

                                                                       
Query: 181 aatgctgtctctcattttttagttaaagatttaattcaaggtgttagaaaagatgaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatgctgtctctcattttttagttaaagatttaattcaaggtgttagaaaagatgaaaaa 240

                                                                       
Query: 241 accattcaacttaaatttgatgaaaatacaaagtcataccaacaatatgaatttgtaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 accattcaacttaaatttgatgaaaatacaaagtcataccaacaatatgaatttgtaaat 300

                                                                       
Query: 301 gatcaaccaccacaaagaaaaaagagaggaaagattcaaattgatgatgaacaaccaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatcaaccaccacaaagaaaaaagagaggaaagattcaaattgatgatgaacaaccaact 360

                                                                       
Query: 361 acttgttgtggtggtggttgtggtaaaccaatgccttcaaataattctgaaaaatcaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acttgttgtggtggtggttgtggtaaaccaatgccttcaaataattctgaaaaatcaact 420

                                                      
Query: 421 tgttcataaaattcaaattttaatagtaaataataatattaat 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgttcataaaattcaaattttaatagtaaataataatattaat 463


>Contig-U12293-1 (Contig-U12293-1Q) /CSM_Contig/Contig-U12293-1Q.Seq.d
          Length = 984

 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 363 ttgttgtggtggtggttgtggta 385
           |||||||||||||||||||||||
Sbjct: 955 ttgttgtggtggtggttgtggta 933


 Score = 30.2 bits (15), Expect = 2.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 60  aaaggtatttcaaaa 74
           |||||||||||||||
Sbjct: 805 aaaggtatttcaaaa 819


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 228 aaaagatgaaaaaa 241
           ||||||||||||||
Sbjct: 61  aaaagatgaaaaaa 74


>Contig-U12169-1 (Contig-U12169-1Q) /CSM_Contig/Contig-U12169-1Q.Seq.d
          Length = 1698

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 363  ttgttgtggtggtggttgtggtaaa 387
            |||||||||||||||||||| ||||
Sbjct: 1356 ttgttgtggtggtggttgtgataaa 1332


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,140
Number of Sequences: 6905
Number of extensions: 15140
Number of successful extensions: 2413
Number of sequences better than 10.0: 817
length of query: 509
length of database: 5,674,871
effective HSP length: 16
effective length of query: 493
effective length of database: 5,564,391
effective search space: 2743244763
effective search space used: 2743244763
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 8. 2
Homology vs DNA 
Query= Contig-U05718-1 (Contig-U05718-1Q) /CSM_Contig/Contig-U05718-1Q.Seq.d
         (509 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268139) Dictyostelium discoideum vegetative cDNA clone:VS...   811   0.0    1
(C94449) Dictyostelium discoideum slug cDNA, clone SSK818.        811   0.0    1
(AF310893) Dictyostelium discoideum RacG (racG) gene, comple...   490   0.0    2
(AU268140) Dictyostelium discoideum vegetative cDNA clone:VS...   113   4e-31  2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    52   0.022  1
(AC215567) Pteropus vampyrus clone CH279-384E1, WORKING DRAF...    48   0.34   1
(AC214707) Pteropus vampyrus clone CH279-164A1, WORKING DRAF...    48   0.34   1
(FC299020) CAIC10079.fwd CAIC Nematostella vectensis Nemve w...    48   0.34   1
(FC299019) CAIC10079.rev CAIC Nematostella vectensis Nemve w...    48   0.34   1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    40   0.39   7
(AC194575) Macaca mulatta clone CH250-319M11, WORKING DRAFT ...    38   0.49   6
(AC155157) Medicago truncatula chromosome 2 BAC clone mth2-5...    38   0.61   3
(DU090303) 318232 Tomato HindIII BAC Library Solanum lycoper...    40   0.63   2
(AF039720) Caenorhabditis elegans cosmid F33D11, complete se...    34   0.82   4
(AC169545) Bos taurus clone CH240-245B18, WORKING DRAFT SEQU...    38   0.84   3
(AB042235) Homo sapiens genomic DNA, chromosome 6q21, clone:...    36   0.90   5
(AC127846) Rattus norvegicus clone CH230-207G6, WORKING DRAF...    44   1.3    5
(BX957339) Zebrafish DNA sequence from clone DKEY-285D11 in ...    46   1.3    1
(BX324230) Zebrafish DNA sequence from clone CH211-42C5 in l...    46   1.3    1
(CT030723) Mouse DNA sequence from clone RP23-33L24 on chrom...    46   1.3    1
(AC164108) Mus musculus BAC clone RP24-96K15 from chromosome...    46   1.3    1
(AC163109) Mus musculus 6 BAC RP23-172E18 (Roswell Park Canc...    46   1.3    1
(AC153377) Mus musculus 6 BAC RP23-380O16 (Roswell Park Canc...    46   1.3    1
(FN357540) Schistosoma mansoni genome sequence supercontig S...    46   1.3    1
(AC157110) Bos taurus clone CH240-70K6, WORKING DRAFT SEQUEN...    46   1.3    1
(AC156369) Felis catus clone RP86-348B19, WORKING DRAFT SEQU...    46   1.3    1
(AC130172) Rattus norvegicus clone CH230-39I11, WORKING DRAF...    46   1.3    1
(FP312751) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.3    1
(BX537111) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.3    1
(AC223835) Bos taurus clone CH240-456M8, WORKING DRAFT SEQUE...    46   1.3    1
(AC178654) Strongylocentrotus purpuratus clone R3-11O14, WOR...    46   1.3    1
(CZ997882) 187047 Tomato MboI BAC Library Solanum lycopersic...    46   1.3    1
(CV362356) PM0-OT0019-130600-005-E03 OT0019 Homo sapiens cDN...    46   1.3    1
(BJ430058) Dictyostelium discoideum cDNA clone:ddv5n22, 3' e...    46   1.3    1
(FD700683) CAAA10393.fwd CAAA Petromyzon marinus Petromyzon ...    46   1.3    1
(AC232081) Solanum tuberosum chromosome 5 clone RH097P18, **...    40   1.3    4
(AC159814) Mus musculus BAC clone RP23-389H15 from chromosom...    38   1.4    3
(CU466481) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.4    4
(AC213184) Saimiri boliviensis boliviensis clone CH254-190D1...    36   1.5    5
(AC093042) Homo sapiens BAC clone RP11-765C7 from 2, complet...    34   1.9    5
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    36   2.0    3
(CP001390) Geobacter sp. FRC-32, complete genome.                  32   2.1    2
(AM180355) Clostridium difficile 630 complete genome.              32   2.1    2
(BG107553) 602277693F1 NIH_MGC_86 Homo sapiens cDNA clone IM...    40   2.2    2
(EJ923268) 1093018770547 Global-Ocean-Sampling_GS-30-02-01-1...    34   2.4    2
(AL691481) Mouse DNA sequence from clone RP23-173C3 on chrom...    38   2.6    6
(AC220983) Pongo abelii BAC clone CH276-269G8 from chromosom...    32   2.6    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   2.6    2
(AC202767) Nomascus leucogenys leucogenys clone CH271-72C3, ...    32   2.6    2
(AC079320) Homo sapiens chromosome 5, clone RP11-729C24, com...    32   2.6    2
(U20341) Cassava vein mosaic virus, complete genome.               38   2.6    3
(U59751) Cassava vein mosaic virus, complete genome.               38   2.6    3
(AC187464) Medicago truncatula chromosome 2 BAC clone mth2-6...    34   2.7    2
(EJ846355) 1093017857065 Global-Ocean-Sampling_GS-30-02-01-1...    40   2.7    2
(AC004041) Homo sapiens chromosome 5, P1 clone 282d12, P1 51...    32   2.8    2
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   3.0    16
(AP004911) Lotus japonicus genomic DNA, chromosome 4, clone:...    34   3.1    4
(AC090047) Homo sapiens chromosome UNK clone RP11-759E18, WO...    38   3.1    4
(AC201031) Strongylocentrotus purpuratus clone R3-12I9, WORK...    36   3.2    4
(L80197) Homo sapiens (subclone 5_b10 from P1 H16) DNA seque...    32   3.2    2
(AC000952) Homo sapiens (subclone 5_b10 from P1 H16) DNA seq...    32   3.2    2
(AC013452) Homo sapiens chromosome 15 clone RP11-325E5 map 1...    38   3.4    5
(AF217555) Buchnera aphidicola natural-host Uroleucon rurale...    34   3.4    2
(DU521173) 1098609850822 CHORI-243 Ovis aries genomic clone ...    34   3.5    2
(BX954238) Homo sapiens mRNA; EST DKFZp781H1353_r1  (from cl...    32   3.5    2
(AX182748) Sequence 501 from Patent WO0142511.                     32   3.5    2
(AR644809) Sequence 501 from patent US 6869762.                    32   3.5    2
(FE567702) CAXF16217.rev Amphioxus Branchiostoma floridae un...    34   3.5    2
(ET743339) CHO_OF255xn02f1.ab1 CHO_OF Nicotiana tabacum geno...    34   3.6    2
(AC068195) Homo sapiens BAC clone RP11-114B24 from 2, comple...    38   3.6    4
(R93373) yt69e10.r1 Soares fetal liver spleen 1NFLS Homo sap...    32   3.6    2
(AC164974) Pan troglodytes BAC clone CH251-565G22 from chrom...    36   3.7    5
(CU856021) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.9    3
(AC078857) Homo sapiens 3 BAC RP11-678L1 (Roswell Park Cance...    44   4.0    3
(AC073518) Homo sapiens chromosome 3 clone RP11-508O18, WORK...    38   4.0    3
(AC180068) Strongylocentrotus purpuratus clone R3-28L15, WOR...    44   4.1    2
(AC129415) Homo sapiens 3 BAC RP11-382L10 (Roswell Park Canc...    32   4.2    6
(AC107239) Mus musculus chromosome 5 clone RP23-411N3 map 5,...    38   4.4    5
(AC111238) Rattus norvegicus clone CH230-236C14, *** SEQUENC...    42   4.6    3
(AP002531) Homo sapiens genomic DNA, chromosome 6q21, anti-o...    36   4.6    5
(AC020991) Homo sapiens clone RP11-22P7, WORKING DRAFT SEQUE...    36   4.6    5
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   4.9    9
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    32   5.1    12
(AC163692) Mus musculus BAC clone RP24-68H1 from chromosome ...    40   5.2    3
(BV439530) S237P617RD8.T0 PortugueseWaterDog Canis familiari...    44   5.3    1
(BC078642) Mus musculus heterogeneous nuclear ribonucleoprot...    44   5.3    1
(BC027844) Mus musculus heterogeneous nuclear ribonucleoprot...    44   5.3    1
(BC021506) Mus musculus heterogeneous nuclear ribonucleoprot...    44   5.3    1
(AC163335) Mus musculus chromosome 7, clone RP24-149G13, com...    44   5.3    1
(AC162614) Mus musculus chromosome 7, clone RP23-421O10, com...    44   5.3    1
(AC161884) Mus musculus BAC clone RP23-77K23 from chromosome...    44   5.3    1
(AC151575) Mus musculus BAC clone RP24-126E1 from 19, comple...    44   5.3    1
(AC134845) Mus musculus BAC clone RP24-424K5 from chromosome...    44   5.3    1
(AC133102) Mus musculus BAC clone RP23-173H19 from 1, comple...    44   5.3    1
(AC132952) Mus musculus BAC clone RP24-175H8 from 19, comple...    44   5.3    1
(AC131028) Mus musculus chromosome 3, clone RP23-293M23, com...    44   5.3    1
(AC128270) Rattus norvegicus 12 BAC CH230-48A22 (Children's ...    44   5.3    1
(AC119211) Mus musculus chromosome 7, clone RP24-191C15, com...    44   5.3    1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    44   5.3    1
(CR382127) Yarrowia lipolytica strain CLIB122 chromosome A c...    44   5.3    1
(AM451343) Vitis vinifera contig VV78X072521.3, whole genome...    44   5.3    1
(AM434456) Vitis vinifera contig VV78X108798.9, whole genome...    44   5.3    1
(AF175273) Yarrowia lipolytica alcohol dehydrogenase 3 (ADH3...    44   5.3    1
(AC124963) Medicago truncatula clone mth2-24f5, complete seq...    44   5.3    1
(AR556186) Sequence 11317 from patent US 6747137.                  44   5.3    1
(AJ271040) Plasmodium yoelii yoelii partial map-1 gene for m...    44   5.3    1
(AJ245435) Plasmodium falciparum gc-alpha gene for guanylyl ...    44   5.3    1
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete...    44   5.3    1
(AB231875) Octopus ocellatus mRNA for zinc finger protein Oo...    44   5.3    1
(CT476835) Human DNA sequence from clone CH507-286C5 on chro...    44   5.3    1
(AL391315) Human DNA sequence from clone RP11-150F24 on chro...    44   5.3    1
(AL137139) Human DNA sequence from clone RP11-134O15 on chro...    44   5.3    1
(AC097520) Homo sapiens BAC clone RP11-562F9 from 4, complet...    44   5.3    1
(AC096915) Homo sapiens chromosome 3 clone RP11-24H1, comple...    44   5.3    1
(AC009411) Homo sapiens BAC clone RP11-342D1 from 2, complet...    44   5.3    1
(AC004803) Homo sapiens 12 BAC RP11-359B12 (Roswell Park Can...    44   5.3    1
(AC158561) Mus musculus chromosome 3 clone RP24-120O2 map 3,...    44   5.3    1
(AC152561) Mus musculus chromosome 14 clone RP23-223N10, ***...    44   5.3    1
(AC145086) Mus musculus clone RP24-501D2, WORKING DRAFT SEQU...    44   5.3    1
(AC136667) Rattus norvegicus clone CH230-431G5, WORKING DRAF...    44   5.3    1
(AC132694) Rattus norvegicus clone CH230-490C22, WORKING DRA...    44   5.3    1
(AC130126) Rattus norvegicus clone CH230-139L11, *** SEQUENC...    44   5.3    1
(AC128004) Rattus norvegicus clone CH230-262L8, *** SEQUENCI...    44   5.3    1
(AC124889) Rattus norvegicus clone CH230-1C21, *** SEQUENCIN...    44   5.3    1
(AC123453) Rattus norvegicus clone CH230-82E5, WORKING DRAFT...    44   5.3    1
(AC121656) Rattus norvegicus clone CH230-465A10, WORKING DRA...    44   5.3    1
(AC121509) Mus musculus clone RP24-365J5, WORKING DRAFT SEQU...    44   5.3    1
(AC118082) Rattus norvegicus clone CH230-372D21, WORKING DRA...    44   5.3    1
(AC112544) Rattus norvegicus clone CH230-230P7, *** SEQUENCI...    44   5.3    1
(AC106093) Rattus norvegicus clone CH230-133H11, *** SEQUENC...    44   5.3    1
(AC098075) Rattus norvegicus clone CH230-120M14, WORKING DRA...    44   5.3    1
(AC095717) Rattus norvegicus clone CH230-9K13, WORKING DRAFT...    44   5.3    1
(FP340249) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(FP236242) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    44   5.3    1
(FP102681) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(FP102503) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(CU914807) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(CU861593) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(CU682357) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(CU633604) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(AC094218) Rattus norvegicus clone CH230-2P8, *** SEQUENCING...    44   5.3    1
(AC094061) Rattus norvegicus clone CH230-118I13, WORKING DRA...    44   5.3    1
(AC091342) Rattus norvegicus clone CH230-1C20, WORKING DRAFT...    44   5.3    1
(AC073725) Mus musculus clone RP23-216O16, WORKING DRAFT SEQ...    44   5.3    1
(CU468390) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(CU468307) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(AL591467) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   5.3    1
(AC230079) Bos taurus clone CH240-522F17, WORKING DRAFT SEQU...    44   5.3    1
(AC224452) Bos taurus clone CH240-484L19, WORKING DRAFT SEQU...    44   5.3    1
(AC224309) Bos taurus clone CH240-489O2, WORKING DRAFT SEQUE...    44   5.3    1
(AC175534) Bos taurus clone CH240-350D5, WORKING DRAFT SEQUE...    44   5.3    1
(AC167317) Sorex araneus clone SA_Ba-55E16, WORKING DRAFT SE...    44   5.3    1
(AC163340) Mus musculus chromosome 14 clone RP24-357F12, WOR...    44   5.3    1
(AK155604) Mus musculus B6-derived CD11 +ve dendritic cells ...    44   5.3    1
(AK087545) Mus musculus 0 day neonate eyeball cDNA, RIKEN fu...    44   5.3    1
(AZ196494) SP_1032_A1_D07_SP6E Strongylocentrotus purpuratus...    44   5.3    1
(AY410330) Mus musculus HCM3854 gene, VIRTUAL TRANSCRIPT, pa...    44   5.3    1
(FH137966) CHO_OF3072xc16f2.ab1 CHO_OF3 Nicotiana tabacum ge...    44   5.3    1
(FH137936) CHO_OF3072xc16f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   5.3    1
(EK411482) 1095505193382 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(EK133439) 1093011411515 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.3    1
(EI762734) CHORI510R314G21TR BAC library from the primary ov...    44   5.3    1
(EI746626) CHORI520R115O09TR BAC library from the breast cel...    44   5.3    1
(ED027052) SBA024_I15.f Sugar beet BAC library USH20 (Code S...    44   5.3    1
(DU457598) 1098415997640 CHORI-243 Ovis aries genomic clone ...    44   5.3    1
(AL279292) Tetraodon nigroviridis genome survey sequence T7 ...    44   5.3    1
(DH736893) Rattus norvegicus DNA, BAC clone: RNB1-309L23, 3'...    44   5.3    1
(DH649946) Rattus norvegicus DNA, BAC clone: RNB1-192J08, 3'...    44   5.3    1
(DH515888) Rattus norvegicus DNA, BAC clone: RNB1-011J07, 5'...    44   5.3    1
(DH485162) Monosiga ovata DNA, fosmid clone: MOF-041G19, gen...    44   5.3    1
(CZ921537) 1098415675759 CHORI-243 Ovis aries genomic clone ...    44   5.3    1
(CU049520) Equus caballus GSS, BAC clone CH241-149I10, SP6 e...    44   5.3    1
(AG496676) Mus musculus molossinus DNA, clone:MSMg01-395P21....    44   5.3    1
(EH742958) CNMS2640.b1_P12.ab1 CNM(LMS) spotted knapweed Cen...    44   5.3    1
(EH009653) USDA-FP_182829 Lysiphlebus testaceipes adult whol...    44   5.3    1
(EB717067) PMAO-aab12a04.g1 Lamprey_EST_Embryo Petromyzon ma...    44   5.3    1
(DT735302) EST1169152 Aquilegia cDNA library Aquilegia formo...    44   5.3    1
(DN581213) 92305482 Sea Urchin primary mesenchyme cell cDNA ...    44   5.3    1
(CX206657) MNS11011 Mouse Neurosphere Normalized cDNA librar...    44   5.3    1
(BY598620) Mus musculus adult inner ear cDNA, RIKEN full-len...    44   5.3    1
(BY482198) Mus musculus bone marrow macrophage cDNA, RIKEN f...    44   5.3    1
(BQ551087) H4007C04-5 NIA Mouse 7.4K cDNA Clone Set Mus musc...    44   5.3    1
(BI416240) 602988930F1 NCI_CGAP_Lu33 Mus musculus cDNA clone...    44   5.3    1
(AA920449) vz26d08.r1 Soares_thymus_2NbMT Mus musculus cDNA ...    44   5.3    1
(BF246222) 601853811F1 NIH_MGC_57 Homo sapiens cDNA clone IM...    44   5.3    1
(BF059418) 7k59c12.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I...    44   5.3    1
(BE311115) 601088396F1 NCI_CGAP_Mam5 Mus musculus cDNA clone...    44   5.3    1
(BE289293) 601089801F1 NCI_CGAP_Mam5 Mus musculus cDNA clone...    44   5.3    1
(FD989202) RR4GW62TF RR4(PB) Raphanus raphanistrum subsp. la...    44   5.3    1
(FD985017) RR4GW62JQ RR4(PB) Raphanus raphanistrum subsp. la...    44   5.3    1
(FD820658) CBGZ21427.fwd CBGZ Volvox carteri f. nagariensis ...    44   5.3    1
(EY918817) RR4DL34JQ RR4(PB) Raphanus raphanistrum subsp. la...    44   5.3    1
(EY738680) CS00-C3-705-046-E01-CT.F Sweet orange fruit, deve...    44   5.3    1
(EX775384) RR4C182JQ RR4(PB) Raphanus raphanistrum subsp. la...    44   5.3    1
(EX771324) RR4C182TF RR4(PB) Raphanus raphanistrum subsp. la...    44   5.3    1
(FJ930833) Uncultured bacterium clone W7-C01 16S small subun...    44   5.3    1
(EF414150) Uncultured Flexibacter sp. clone MPWIC_H11 16S ri...    44   5.3    1
(EF092238) Uncultured Flavobacteriaceae bacterium clone B276...    44   5.3    1
(DQ822567) Tenacibaculum litopenaei strain B-I 16S ribosomal...    44   5.3    1
(AY006471) Flexibacter echinicida strain F12 16S ribosomal R...    44   5.3    1
(AY006470) Flexibacter echinicida strain F11 16S ribosomal R...    44   5.3    1
(AY006469) Flexibacter echinicida strain F9 16S ribosomal RN...    44   5.3    1
(AY006468) Flexibacter echinicida strain F8 16S ribosomal RN...    44   5.3    1
(AY006467) Flexibacter echinicida strain F4 16S ribosomal RN...    44   5.3    1
(AY006466) Flexibacter echinicida strain F2 16S ribosomal RN...    44   5.3    1
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    36   5.4    4
(BF808970) PM4-CI0108-151100-004-g12 CI0108 Homo sapiens cDN...    38   5.5    2
(AC232175) Lama pacos clone CH246-232F1, WORKING DRAFT SEQUE...    32   6.0    6
(CT025540) Mouse DNA sequence from clone RP24-280B23 on chro...    38   6.2    2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    32   7.0    6
(AY758743) RP43-133h13 TJ Pan troglodytes genomic DNA Pan tr...    40   7.6    2
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    36   7.7    15
(AL606804) Human DNA sequence from clone RP11-978I15 on chro...    36   7.7    5
(EJ665913) 1092955041680 Global-Ocean-Sampling_GS-30-02-01-1...    34   7.9    2
(AC157076) Bos taurus clone CH240-62L22, WORKING DRAFT SEQUE...    38   8.1    5
(AM446104) Vitis vinifera contig VV78X175073.4, whole genome...    38   8.2    2
(EX750573) RR1BK46JQ RR1(CS) Raphanus raphanistrum subsp. ma...    38   8.4    2
(AC132062) Rattus norvegicus clone CH230-10I9, *** SEQUENCIN...    36   8.4    5
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ...    30   8.4    2
(AC009957) Homo sapiens BAC clone RP11-285H23 from 2, comple...    38   8.5    5
(CU929995) Brassica rapa subsp. pekinensis clone KBrB084M10,...    38   8.6    5
(EJ703027) 1092956042990 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.8    2
(AL163217) Homo sapiens chromosome 21 segment HS21C017.            32   9.1    2
(AC156804) Pan troglodytes BAC clone CH251-371A18 from chrom...    32   9.3    2
(AC128332) Rattus norvegicus clone CH230-206O1, WORKING DRAF...    34   9.3    6
(AC170235) Bos taurus clone CH240-207L11, WORKING DRAFT SEQU...    32   9.4    2
(AE017263) Mesoplasma florum L1 complete genome.                   32   9.4    11
(AC024726) Homo sapiens chromosome 21 clone RP11-313P5, WORK...    32   9.4    2
(BS000041) Pan troglodytes chromosome 22 clone:PTB-022L23, m...    32   9.4    2
(DW647303) CLJ382-D15.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    36   9.5    2
(AC055753) Homo sapiens 3 BAC RP11-503I22 (Roswell Park Canc...    32   9.5    2
(CU694247) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   9.5    2
(AC157216) Pan troglodytes BAC clone CH251-66E23 from chromo...    32   9.5    2
(AC224616) Bos taurus clone CH240-480K15, WORKING DRAFT SEQU...    34   9.5    5
(FP067378) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   9.5    2
(AC126484) Rattus norvegicus clone CH230-133P10, WORKING DRA...    36   9.6    6
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    38   9.6    6
(CV414722) RC3-BN0034-190700-019-c06 BN0034 Homo sapiens cDN...    32   9.6    3
(AC132359) Mus musculus chromosome UNK clone RP24-137N6, WOR...    40   9.6    4
(AF130417) Homo sapiens chromosome 21 clone PAC P704-97I18 m...    32   9.7    2
(AC016593) Homo sapiens chromosome 5 clone CTD-2005H4, compl...    32   9.7    2
(DE238247) Trifolium pratense DNA, clone:RCG35581.                 36   9.9    2

>(AU268139) Dictyostelium discoideum vegetative cDNA clone:VSH892,
           5' end single read.
          Length = 505

 Score =  811 bits (409), Expect = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Plus


Query: 1   gtaataatgaatagagcaaaagttttatctagctatttaggtttattaagaacagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtaataatgaatagagcaaaagttttatctagctatttaggtttattaagaacagagaaa 60


Query: 61  aaggtatttcaaaatgataaaagagcacttgaacatgtaatcaatttaacaagagttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaggtatttcaaaatgataaaagagcacttgaacatgtaatcaatttaacaagagttcaa 120


Query: 121 tttagagataataaaaatgaaacagataatacaaaaattaatgaaatgatagatcatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttagagataataaaaatgaaacagataatacaaaaattaatgaaatgatagatcatgca 180


Query: 181 aatgctgtctctcattttttagttaaagatttaattcaaggtgttagaaaagatgaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatgctgtctctcattttttagttaaagatttaattcaaggtgttagaaaagatgaaaaa 240


Query: 241 accattcaacttaaatttgatgaaaatacaaagtcataccaacaatatgaatttgtaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 accattcaacttaaatttgatgaaaatacaaagtcataccaacaatatgaatttgtaaat 300


Query: 301 gatcaaccaccacaaagaaaaaagagaggaaagattcaaattgatgatgaacaaccaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatcaaccaccacaaagaaaaaagagaggaaagattcaaattgatgatgaacaaccaact 360


Query: 361 acttgttgtggtggtggttgtggtaaaccaatgccttcaaataattctg 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acttgttgtggtggtggttgtggtaaaccaatgccttcaaataattctg 409

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 703,700,717
Number of extensions: 48924918
Number of successful extensions: 5727600
Number of sequences better than 10.0: 244
Length of query: 509
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 486
Effective length of database: 102,190,702,835
Effective search space: 49664681577810
Effective search space used: 49664681577810
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U05718-1 (Contig-U05718-1Q) /CSM_Contig/Contig-U05718-1Q.Seq.d
         (509 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9GPS1) RecName: Full=LYR motif-containing protein 7;  &AF31089...   266   2e-70
(B4F7A1) RecName: Full=LYR motif-containing protein 7;  &BC16819...    60   3e-08
AK006294_1(AK006294|pid:none) Mus musculus adult male testis cDN...    59   7e-08
(Q9DA03) RecName: Full=LYR motif-containing protein 7;  &AL95481...    59   7e-08
(Q5U5X0) RecName: Full=LYR motif-containing protein 7;  &BC03793...    56   4e-07
(Q2M2S9) RecName: Full=LYR motif-containing protein 7;  &BC11166...    56   4e-07
BC097828_1(BC097828|pid:none) Xenopus laevis hypothetical LOC494...    55   1e-06
BC142889_1(BC142889|pid:none) Danio rerio zgc:165597, mRNA (cDNA...    54   2e-06
BC082902_1(BC082902|pid:none) Xenopus laevis hypothetical LOC494...    54   2e-06
(Q5REC3) RecName: Full=LYR motif-containing protein 7;  &CR85760...    54   3e-06
BT079466_1(BT079466|pid:none) Esox lucius clone eluc-bkhp-001-30...    52   6e-06
CP000496_255(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    46   5e-04
AL389890_17(AL389890|pid:none) Neurospora crassa DNA linkage gro...    46   6e-04
AL844504_47(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    45   8e-04
AL929351_47(AL929351|pid:none) Plasmodium falciparum strain 3D7,...    45   8e-04
FM992690_27(FM992690|pid:none) Candida dubliniensis CD36 chromos...    45   0.001
(Q4SQJ2) RecName: Full=LYR motif-containing protein 7;                 43   0.005
AY737040_1(AY737040|pid:none) Oreochromis mossambicus clone Ov04...    41   0.014
(Q54WH5) RecName: Full=ELMO domain-containing protein E;               39   0.055
CP001520_32(CP001520|pid:none) Borrelia sp. SV1 plasmid SV1_cp32...    38   0.12
AM270315_10(AM270315|pid:none) Aspergillus niger contig An14c008...    37   0.21
CR382127_242(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...    37   0.27
CU633899_160(CU633899|pid:none) Podospora anserina genomic DNA c...    36   0.61
CU928167_395(CU928167|pid:none) Kluyveromyces thermotolerans str...    35   0.79
BT046653_1(BT046653|pid:none) Salmo salar clone ssal-evd-506-275...    35   0.79
AL844509_581(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.0
EF145717_1(EF145717|pid:none) Populus trichocarpa clone WS0112_O...    35   1.0
CR380953_190(CR380953|pid:none) Candida glabrata strain CBS138 c...    35   1.4
AM920427_1482(AM920427|pid:none) Penicillium chrysogenum Wiscons...    34   1.8
CP000880_2934(CP000880|pid:none) Salmonella enterica subsp. ariz...    34   2.3
(Q54GY6) RecName: Full=Kinase and exchange factor for Rac A;    ...    34   2.3
AY086221_1(AY086221|pid:none) Arabidopsis thaliana clone 22637 m...    34   2.3
BT073532_1(BT073532|pid:none) Oncorhynchus mykiss clone omyk-evn...    33   3.0
AY072116_1(AY072116|pid:none) Arabidopsis thaliana unknown prote...    33   3.0
AX885817_1(AX885817|pid:none) Sequence 1680 from Patent EP1033401.     33   3.0
(Q9HD34) RecName: Full=LYR motif-containing protein 4;  &AF17007...    33   3.0
AX885818_1(AX885818|pid:none) Sequence 1681 from Patent EP1033401.     33   3.0
AE014186_353(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.9
AF251283_1(AF251283|pid:none) Plasmodium falciparum CCAAT-box DN...    33   5.2
CP000916_1849(CP000916|pid:none) Thermotoga neapolitana DSM 4359...    32   6.7
BX293980_451(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi...    32   6.7
CP001056_2245(CP001056|pid:none) Clostridium botulinum B str. Ek...    32   6.7
AL844508_73(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    32   6.7
CP000026_4041(CP000026|pid:none) Salmonella enterica subsp. ente...    32   6.7
AM933172_4259(AM933172|pid:none) Salmonella enterica subsp. ente...    32   6.7
CP001127_4441(CP001127|pid:none) Salmonella enterica subsp. ente...    32   8.8
FM242711_1719(FM242711|pid:none) Listeria monocytogenes Clip8145...    32   8.8
AL844504_221(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    32   8.8
AL929353_66(AL929353|pid:none) Plasmodium falciparum strain 3D7,...    32   8.8
AL844505_179(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    32   8.8
AE017262_1740(AE017262|pid:none) Listeria monocytogenes str. 4b ...    32   8.8
FN357510_16(FN357510|pid:none) Schistosoma mansoni genome sequen...    32   8.8

>(Q9GPS1) RecName: Full=LYR motif-containing protein 7;
           &AF310893_1(AF310893|pid:none)
          Length = 140

 Score =  266 bits (681), Expect = 2e-70
 Identities = 133/140 (95%), Positives = 133/140 (95%)
 Frame = +1

Query: 7   MNRAKVLSSYLGLLRTEKKVFQNDKRALEHVINLTRVQFRDNKNETDNTKINEMIDHANA 186
           MNRAKVLSSYLGLLRTEKKVFQNDKRALEHVINLTRVQFRDNKNETDNTKINEMIDHANA
Sbjct: 1   MNRAKVLSSYLGLLRTEKKVFQNDKRALEHVINLTRVQFRDNKNETDNTKINEMIDHANA 60

Query: 187 VSHFLVKDLIQGVRKDEKTIQLKFDENTKSYQQYEFVNDQPPQRKKRGKIQIDDEQPTTX 366
           VSHFLVKDLIQGVRKDEKTIQLKFDENTKSYQQYEFVNDQPPQRKKRGKIQIDDEQPTT
Sbjct: 61  VSHFLVKDLIQGVRKDEKTIQLKFDENTKSYQQYEFVNDQPPQRKKRGKIQIDDEQPTTC 120

Query: 367 XXXXXXKPMPSNNSEKSTCS 426
                 KPMPSNNSEKSTCS
Sbjct: 121 CGGGCGKPMPSNNSEKSTCS 140

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 463,567,429
Number of extensions: 6524362
Number of successful extensions: 21297
Number of sequences better than 10.0: 52
Number of HSP's gapped: 21259
Number of HSP's successfully gapped: 52
Length of query: 169
Length of database: 1,040,966,779
Length adjustment: 119
Effective length of query: 50
Effective length of database: 659,656,864
Effective search space: 32982843200
Effective search space used: 32982843200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.89  gvh: 0.50  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.04
 nuc: 0.15  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U05718-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0