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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05712-1
Contig ID Contig-U05712-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05712-1 (Contig-U05712-1Q) /CSM_Contig/Contig-U05712-1Q.Seq.d
AAACAAATAAAATAATATTATATTATAAAATTTTAGAATCTATAAACATA
TAAAAAAAAAAAAAAAAAAAATGTCAGAACCAGTTAATAAAGTAAAACAA
ACTCAACAACAAGTTGATGATGTTACAAATACCATGCACATTGCAGTTGG
TAAAATGTTAGATAATCAACAAAAAGTTTCAGAATTAACAGATAAGAGTG
AAAATATGAAACAAGGTGCTCAACAATTCAAAAAGAAGACTAATGAAATC
AAACGTTTAATGTGGTGTAGAAATATAAAACTTACTCTTATCATTATTGC
AGTAGTTGTGCTCTTATTGGTTGTTATTATTGTACCAATTGTTCTCAAAT
TTACATAAATCAATTTAAAAAAAGGAAAAACAACATTAATATATATATTT
CAGAATTCAAAAAATTAAAAAAAAAAAAAAAAGTTATAACTCAAAATAAT
AAATAAGTAATAATAACCAAAAAAAAAAAAAGAAACAAATAATAACNNNN
NNNAAATAATAAATAAGTAATAATAACCAAAAAAAAAAAAAGAAACAAAT
AATANCTAGTAGCAAATAATAAATAATAATAATAAATAACAAATAATACA
ATATAAATTCATTTTTTATATACAGTGCAAACTATAGTATTTAAACAATA
GCACACAAATATATATATTTGTAAATATAATAACCCAATATCAAAAAAAA
AAAAACAAAAATAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGAAAATA
AAATCAAATATGTCATTATTTATAGACTTATATAAA
Gap no gap
Contig length 786
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2916538
End point 2917212
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05712
List of clone(s) 

est1=SSK783E,1,787
Translated Amino Acid sequence 
nk*nniil*NFRIYKHIKKKKKKMSEPVNKVKQTQQQVDDVTNTMHIAVGKMLDNQQKVS
ELTDKSENMKQGAQQFKKKTNEIKRLMWCRNIKLTLIIIAVVVLLLVVIIVPIVLKFT*i
nlkkgkttliyifqnskn*kkkkkl*lkiink***pkkkketnnnxxxiink***pkkkk
etnnx**qiinnnnk*qiiqykfifyiqckl*ylnnstqiyifvniitqyqkkknknkkk
kekkkkkrk*nqichyl*tyi
Translated Amino Acid sequence (All Frames) 
Frame A:
kqik*yyiikf*nl*tykkkkkknvrts**sktnstts**cykyhahcsw*nvr*stksf
rinr*e*kyetrcstiqked**nqtfnvv*kyktysyhycsscaligcyyctncsqiyin
qfkkrknniniyisefkklkkkkkvitqnnk*viitkkkkrnk**xxxnnk*viitkkkk
rnk*xlvannk****itnnti*ihflytvqtivfkq*htniyickynnpiskkkkqk*kk
krkkkkkkkiksnmslfidlyk


Frame B:
nk*nniil*NFRIYKHIKKKKKKMSEPVNKVKQTQQQVDDVTNTMHIAVGKMLDNQQKVS
ELTDKSENMKQGAQQFKKKTNEIKRLMWCRNIKLTLIIIAVVVLLLVVIIVPIVLKFT*i
nlkkgkttliyifqnskn*kkkkkl*lkiink***pkkkketnnnxxxiink***pkkkk
etnnx**qiinnnnk*qiiqykfifyiqckl*ylnnstqiyifvniitqyqkkknknkkk
kekkkkkrk*nqichyl*tyi


Frame C:
tnkiilyykilesini*kkkkkkcqnqlik*nklnnklmmlqipctlqlvkc*iinkkfq
n*qirvki*nkvlnnskrrlmksnv*cgvei*nlllsllq*lcsywllllyqlfsnlhks
i*kkekqh*yiyfriqkikkkkksynsk**isnnnqkkkkkqiitxxk**isnnnqkkkk
kqiixssk**iiiinnk*yninsffiysanysi*tiahkyiyl*i**pnikkkktkikkk
kkkkkkkenkikyviiyrli*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05712-1 (Contig-U05712-1Q)
/CSM_Contig/Contig-U05712-1Q.Seq.d
         (786 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05712-1 (Contig-U05712-1Q) /CSM_Contig/Conti...   585  e-167
Contig-U01797-1 (Contig-U01797-1Q) /CSM_Contig/Conti...   305  4e-83
Contig-U13054-1 (Contig-U13054-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U13027-1 (Contig-U13027-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12785-1 (Contig-U12785-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12594-1 (Contig-U12594-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U10594-1 (Contig-U10594-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U06916-1 (Contig-U06916-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U08853-1 (Contig-U08853-1Q) /CSM_Contig/Conti...    34  0.22

>Contig-U05712-1 (Contig-U05712-1Q) /CSM_Contig/Contig-U05712-1Q.Seq.d
          Length = 786

 Score =  585 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Plus

                                                                       
Query: 72  tgtcagaaccagttaataaagtaaaacaaactcaacaacaagttgatgatgttacaaata 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  tgtcagaaccagttaataaagtaaaacaaactcaacaacaagttgatgatgttacaaata 131

                                                                       
Query: 132 ccatgcacattgcagttggtaaaatgttagataatcaacaaaaagtttcagaattaacag 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ccatgcacattgcagttggtaaaatgttagataatcaacaaaaagtttcagaattaacag 191

                                                                       
Query: 192 ataagagtgaaaatatgaaacaaggtgctcaacaattcaaaaagaagactaatgaaatca 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ataagagtgaaaatatgaaacaaggtgctcaacaattcaaaaagaagactaatgaaatca 251

                                                                       
Query: 252 aacgtttaatgtggtgtagaaatataaaacttactcttatcattattgcagtagttgtgc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aacgtttaatgtggtgtagaaatataaaacttactcttatcattattgcagtagttgtgc 311

                                                                  
Query: 312 tcttattggttgttattattgtaccaattgttctcaaatttacataaatcaattt 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcttattggttgttattattgtaccaattgttctcaaatttacataaatcaattt 366


 Score =  167 bits (84), Expect = 2e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                       
Query: 609 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 668

                                   
Query: 669 ttgtaaatataataacccaatatc 692
           ||||||||||||||||||||||||
Sbjct: 669 ttgtaaatataataacccaatatc 692


 Score =  101 bits (51), Expect = 1e-21
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                             
Query: 1  aaacaaataaaataatattatattataaaattttagaatctataaacatat 51
          |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaacaaataaaataatattatattataaaattttagaatctataaacatat 51


 Score = 85.7 bits (43), Expect = 7e-17
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 744 gaaaataaaatcaaatatgtcattatttatagacttatataaa 786
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaaaataaaatcaaatatgtcattatttatagacttatataaa 786


 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 433 gttataactcaaaataataaataagtaataataacc 468
           ||||||||||||||||||||||||||||||||||||
Sbjct: 433 gttataactcaaaataataaataagtaataataacc 468


 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                          
Query: 482 gaaacaaataataacnnnnnnnaaataataaataagtaataataacc 528
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaaacaaataataacnnnnnnnaaataataaataagtaataataacc 528


 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 444 aaataataaataagtaataataacc 468
           |||||||||||||||||||||||||
Sbjct: 504 aaataataaataagtaataataacc 528


 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 504 aaataataaataagtaataataacc 528
           |||||||||||||||||||||||||
Sbjct: 444 aaataataaataagtaataataacc 468


 Score = 36.2 bits (18), Expect = 0.055
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 655 acaaatatatatatttgt 672
           ||||||||||||||||||
Sbjct: 672 acaaatatatatatttgt 655


 Score = 30.2 bits (15), Expect = 3.4
 Identities = 22/23 (95%), Gaps = 1/23 (4%)
 Strand = Plus / Plus

                                  
Query: 444 aaataataaataagtaataataa 466
           ||||||||||||| |||||||||
Sbjct: 564 aaataataaataa-taataataa 585


 Score = 30.2 bits (15), Expect = 3.4
 Identities = 22/23 (95%), Gaps = 1/23 (4%)
 Strand = Plus / Plus

                                  
Query: 504 aaataataaataagtaataataa 526
           ||||||||||||| |||||||||
Sbjct: 564 aaataataaataa-taataataa 585


>Contig-U01797-1 (Contig-U01797-1Q) /CSM_Contig/Contig-U01797-1Q.Seq.d
          Length = 959

 Score =  305 bits (154), Expect = 4e-83
 Identities = 265/298 (88%), Gaps = 3/298 (1%)
 Strand = Plus / Plus

                                                                       
Query: 72  tgtcagaaccagttaataaagtaaaacaaactcaaca-acaagttgatgatgttacaaat 130
           ||||||| ||||||||||| || |  ||||||||||| ||| ||||||||||||||||||
Sbjct: 333 tgtcagacccagttaataaggttagccaaactcaacacacaggttgatgatgttacaaat 392

                                                                       
Query: 131 accatgcacattgcagttggtaaaatgttagataatcaacaaaaagtttcagaattaac- 189
            |||||| |||||| |||||||||||||| | ||||| || ||| ||||| | |||  | 
Sbjct: 393 cccatgcccattgccgttggtaaaatgttgggtaatccaccaaaggtttcgggatttccg 452

                                                                       
Query: 190 agata-agagtgaaaatatgaaacaaggtgctcaacaattcaaaaagaagactaatgaaa 248
           || || || |||||||| |||| || ||||||||||||||| ||| |  | |||||||||
Sbjct: 453 aggtagagggtgaaaatttgaaccagggtgctcaacaattccaaaggggggctaatgaaa 512

                                                                       
Query: 249 tcaaacgtttaatgtggtgtagaaatataaaacttactcttatcattattgcagtagttg 308
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 513 tcaaacgtttaatgtggtgtggaaatttaaaacttactcttatcattattgcagtagttg 572

                                                                     
Query: 309 tgctcttattggttgttattattgtaccaattgttctcaaatttacataaatcaattt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgctcttattggttgttattattgtaccaattgttctcaaatttacataaatcaattt 630


 Score =  167 bits (84), Expect = 2e-41
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                       
Query: 609 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 874

                                   
Query: 669 ttgtaaatataataacccaatatc 692
           ||||||||||||||||||||||||
Sbjct: 875 ttgtaaatataataacccaatatc 898


 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 433 gttataactcaaaataataaataagtaataataacc 468
           ||||||||||||||||||||||||||||||||||||
Sbjct: 698 gttataactcaaaataataaataagtaataataacc 733


 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 504 aaataataaataagtaataataacc 528
           |||||||||||||||||||||||||
Sbjct: 709 aaataataaataagtaataataacc 733


 Score = 36.2 bits (18), Expect = 0.055
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 655 acaaatatatatatttgt 672
           ||||||||||||||||||
Sbjct: 878 acaaatatatatatttgt 861


 Score = 32.2 bits (16), Expect = 0.86
 Identities = 37/45 (82%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                        
Query: 482 gaaacaaataataacnnnnnnnaaataataaataagtaataataa 526
           |||||||||||||||       ||||||||||||| |||||||||
Sbjct: 748 gaaacaaataataactagtagcaaataataaataa-taataataa 791


 Score = 30.2 bits (15), Expect = 3.4
 Identities = 22/23 (95%), Gaps = 1/23 (4%)
 Strand = Plus / Plus

                                  
Query: 444 aaataataaataagtaataataa 466
           ||||||||||||| |||||||||
Sbjct: 770 aaataataaataa-taataataa 791


>Contig-U13054-1 (Contig-U13054-1Q) /CSM_Contig/Contig-U13054-1Q.Seq.d
          Length = 450

 Score = 38.2 bits (19), Expect = 0.014
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 3   acaaataaaataatattatattataaa 29
           |||||||||||||||| |||| |||||
Sbjct: 84  acaaataaaataatataatataataaa 110


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,155
Number of Sequences: 6905
Number of extensions: 18155
Number of successful extensions: 2286
Number of sequences better than 10.0: 265
length of query: 786
length of database: 5,674,871
effective HSP length: 16
effective length of query: 770
effective length of database: 5,564,391
effective search space: 4284581070
effective search space used: 4284581070
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 8. 2
Homology vs DNA 
Query= Contig-U05712-1 (Contig-U05712-1Q) /CSM_Contig/Contig-U05712-1Q.Seq.d
         (786 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY392436) Dictyostelium discoideum synaptobrevin gene, comp...   565   0.0    3
(AU039082) Dictyostelium discoideum slug cDNA, clone SSM361.      585   e-162  1
(AU038096) Dictyostelium discoideum slug cDNA, clone SSH266.      585   e-162  1
(C93376) Dictyostelium discoideum slug cDNA, clone SSM718.        585   e-162  1
(C93170) Dictyostelium discoideum slug cDNA, clone SSM735.        585   e-162  1
(C91544) Dictyostelium discoideum slug cDNA, clone SSK419.        585   e-162  1
(C90766) Dictyostelium discoideum slug cDNA, clone SSJ122.        561   e-155  1
(AU037221) Dictyostelium discoideum slug cDNA, clone SSB627.      341   e-131  2
(C84160) Dictyostelium discoideum slug cDNA, clone SSC384.        264   e-125  3
(AU071839) Dictyostelium discoideum slug cDNA, clone SSC615.      458   e-124  1
(C93829) Dictyostelium discoideum slug cDNA, clone SSL764.        256   e-123  4
(AU038029) Dictyostelium discoideum slug cDNA, clone SSH177.      311   e-122  2
(AU038337) Dictyostelium discoideum slug cDNA, clone SSH580.      244   e-102  2
(C93402) Dictyostelium discoideum slug cDNA, clone SSM796.        244   e-102  2
(AU073670) Dictyostelium discoideum slug cDNA, clone SSH785.      355   2e-93  1
(AU071285) Dictyostelium discoideum slug cDNA, clone SSB132.      337   4e-88  1
(AU074459) Dictyostelium discoideum slug cDNA, clone SSK783.      335   2e-87  1
(C94425) Dictyostelium discoideum slug cDNA, clone SSK783.        167   3e-49  2
(C90660) Dictyostelium discoideum slug cDNA, clone SSI885.        167   8e-37  1
(AC107670) Mus musculus chromosome 14, clone RP23-54K15, com...    50   0.13   1
(FP102563) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.13   1
(CU655951) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.13   1
(AC225959) Tupaia belangeri clone CH275-553P8, WORKING DRAFT...    50   0.13   1
(AC225956) Tupaia belangeri clone CH275-118H15, WORKING DRAF...    50   0.13   1
(CE101085) tigr-gss-dog-17000371112519 Dog Library Canis lup...    40   0.23   2
(AC216450) Populus trichocarpa clone POP008-B21, complete se...    44   0.25   3
(CE757927) tigr-gss-dog-17000369685704 Dog Library Canis lup...    40   0.28   2
(AC184082) Populus trichocarpa clone Pop1-55P2, complete seq...    44   0.44   3
(EZ096060) TSA: Zea mays contig31713, mRNA sequence.               48   0.53   1
(AC226792) Pan troglodytes chromosome X clone CH251-177J6 ma...    48   0.53   1
(AC230782) Bos taurus clone CH240-499F13, WORKING DRAFT SEQU...    48   0.53   1
(AC223917) Bos taurus clone CH240-454O16, WORKING DRAFT SEQU...    48   0.53   1
(AC223899) Bos taurus clone CH240-455E17, WORKING DRAFT SEQU...    48   0.53   1
(AC164759) Bos taurus clone CH240-155K9, *** SEQUENCING IN P...    48   0.53   1
(AY108161) Zea mays PCO128916 mRNA sequence.                       48   0.53   1
(DV550124) 1000054-G01.GAD10-F UGI-Reseq Zea mays cDNA, mRNA...    48   0.53   1
(CX010180) io45a11.b1 Whole Heart Library (DOGEST5) Canis lu...    48   0.53   1
(CO718769) DG14-70g19 DG14-muscle Canis lupus familiaris cDN...    48   0.53   1
(CO718402) DG14-64j15 DG14-muscle Canis lupus familiaris cDN...    48   0.53   1
(CO708910) DG14-11e21 DG14-muscle Canis lupus familiaris cDN...    48   0.53   1
(CO702200) DG32-224i22 DG32-liver Canis lupus familiaris cDN...    48   0.53   1
(CO697989) DG32-126j11 DG32-liver Canis lupus familiaris cDN...    48   0.53   1
(CO693417) DG11-62b20 DG11-kidney Canis lupus familiaris cDN...    48   0.53   1
(CO691517) DG11-33j24 DG11-kidney Canis lupus familiaris cDN...    48   0.53   1
(CO686864) DG11-222h6 DG11-kidney Canis lupus familiaris cDN...    48   0.53   1
(CO680264) DG11-113a3 DG11-kidney Canis lupus familiaris cDN...    48   0.53   1
(CO680252) DG11-112n19 DG11-kidney Canis lupus familiaris cD...    48   0.53   1
(CO654299) DG10-1m18 DG10-liver Canis lupus familiaris cDNA ...    48   0.53   1
(AW424422) 707014B04.y1 707 - Mixed adult tissues from Walbo...    48   0.53   1
(AW355832) 707014B04.x1 707 - Mixed adult tissues from Walbo...    48   0.53   1
(AC211854) Homo sapiens FOSMID clone ABC9-43957900J21 from c...    42   0.94   2
(AC018892) Homo sapiens BAC clone RP11-499E14 from 2, comple...    40   1.1    3
(AC097486) Homo sapiens BAC clone RP11-213L8 from 4, complet...    46   1.2    4
(AL928863) Zebrafish DNA sequence from clone CH211-152B13 in...    34   1.4    7
(AC090989) Homo sapiens chromosome 18, clone RP11-265C19, co...    42   1.5    3
(CR848029) Zebrafish DNA sequence from clone DKEY-46I24 in l...    46   2.1    1
(BX248130) Zebrafish DNA sequence from clone CH211-236E5 in ...    46   2.1    1
(AJ621744) Gallus gallus gene for hypothetical protein, BAC ...    46   2.1    1
(BV252832) S234P6396RC5.T0 EnglishShepherd Canis familiaris ...    46   2.1    1
(AL606746) Mouse DNA sequence from clone RP23-423J10 on chro...    46   2.1    1
(AC137708) Mus musculus chromosome 3, clone RP24-277H8, comp...    46   2.1    1
(CP001160) Thalassiosira pseudonana CCMP1335 chromosome 7, c...    46   2.1    1
(GC697757) Sequence 13002 from patent US 6812339.                  46   2.1    1
(AC013444) Homo sapiens BAC clone RP11-470B22 from 2, comple...    46   2.1    1
(AC118854) Rattus norvegicus clone CH230-489M7, *** SEQUENCI...    46   2.1    1
(AC112038) Rattus norvegicus clone CH230-61D4, *** SEQUENCIN...    46   2.1    1
(AC107128) Rattus norvegicus clone CH230-133F6, *** SEQUENCI...    46   2.1    1
(CU074301) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.1    1
(AC223021) Bos taurus clone CH240-432B6, WORKING DRAFT SEQUE...    46   2.1    1
(AC172261) Bos taurus clone CH240-508E4, WORKING DRAFT SEQUE...    46   2.1    1
(AC168239) Bos taurus clone CH240-209H21, WORKING DRAFT SEQU...    46   2.1    1
(AC163805) Bos taurus clone CH240-147H11, *** SEQUENCING IN ...    46   2.1    1
(AC025003) Homo sapiens chromosome 2 clone RP11-206J24 map 2...    46   2.1    1
(AC012547) Homo sapiens clone RP11-11K1, WORKING DRAFT SEQUE...    46   2.1    1
(ED948381) OA_CBa0159B10.r OA_CBa Oryza australiensis genomi...    46   2.1    1
(CC548788) CH240_432B6.TARBAC13P2 CHORI-240 Bos taurus genom...    46   2.1    1
(EE560957) BNZB_UP_064_D11_14MAY2004_089 Brassica napus BNZB...    46   2.1    1
(DR869616) JGI_CABG10702.fwd NIH_XGC_tropSto1 Xenopus (Silur...    46   2.1    1
(CX968639) JGI_CAAP3080.fwd NIH_XGC_tropInt1 Xenopus (Silura...    46   2.1    1
(CX442953) JGI_XZG8590.fwd NIH_XGC_tropGas7 Xenopus (Siluran...    46   2.1    1
(GH048193) G906P145FH21.T0 Neurospora crassa cDNA - 7 hours ...    46   2.1    1
(FG290675) 1108793326078 New World Screwworm Egg 9261 ESTs C...    46   2.1    1
(AF046916) Ruminococcus flavefaciens FD-1 glutamine syntheta...    46   2.1    1
(EF179185) Homo sapiens sodium channel, voltage-gated, type ...    42   2.2    2
(DQ784809) Homo sapiens sodium channel protein type V alpha ...    42   2.3    2
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    32   2.8    2
(CR940348) Theileria annulata genomic DNA chromosome 2.            34   3.4    2
(AP006241) Homo sapiens genomic DNA, chromosome 3, clone:RP1...    42   3.5    2
(AL844503) Plasmodium falciparum 3D7 chromosome 4.                 34   3.5    2
(AP001203) Homo sapiens genomic DNA, chromosome 18q12 clone:...    42   3.6    2
(AC115483) Drosophila melanogaster clone BACR20D18, complete...    32   4.0    2
(AC160020) Homo sapiens BAC clone RP11-540L21 from 2, comple...    40   4.0    2
(CQ588086) Sequence 15844 from Patent WO0171042.                   32   4.2    2
(AC014600) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   4.4    2
(AC139442) Rattus norvegicus clone CH230-246B14, WORKING DRA...    42   4.4    4
(GH246151) EST_eluc_evq_1020140 elucevq mixed_tissue Esox lu...    32   5.4    2
(GH246150) EST_eluc_evq_1001324 elucevq mixed_tissue Esox lu...    32   5.4    2
(FE132074) LV_HP_RA18E19r Litopenaeus vannamei hepatopancrea...    34   5.5    2
(FE132075) LV_HP_RA01F08f Litopenaeus vannamei hepatopancrea...    34   5.5    2
(FE132593) LV_HP_RA19I19f Litopenaeus vannamei hepatopancrea...    34   5.5    2
(FE132592) LV_HP_RA19E19r Litopenaeus vannamei hepatopancrea...    34   5.5    2
(FE127508) LV_HP_RA07M18f Litopenaeus vannamei hepatopancrea...    34   5.6    2
(FE127507) LV_HP_RA07G18r Litopenaeus vannamei hepatopancrea...    34   5.6    2
(CR388140) Zebrafish DNA sequence from clone CH211-190G11.         34   5.6    6
(AL591365) Zebrafish DNA sequence from clone BUSM1-150I12 in...    42   6.9    2
(AC137587) Homo sapiens 3 BAC RP13-861G15 (Roswell Park Canc...    42   7.2    3
(FP017252) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   7.7    2
(CU695199) Zebrafish DNA sequence from clone CH1073-473I7 in...    44   8.2    1
(CU681844) Zebrafish DNA sequence from clone CH73-356P16 in ...    44   8.2    1
(CU571326) Zebrafish DNA sequence from clone CH73-311B20 in ...    44   8.2    1
(CT573264) Zebrafish DNA sequence from clone DKEY-262J3 in l...    44   8.2    1
(CT027791) Zebrafish DNA sequence from clone CH211-264F7 in ...    44   8.2    1
(CR925742) Zebrafish DNA sequence from clone CH211-135H12 in...    44   8.2    1
(CR450752) Zebrafish DNA sequence from clone CH211-83M9 in l...    44   8.2    1
(CR394540) Zebrafish DNA sequence from clone DKEYP-10E10 in ...    44   8.2    1
(BX296519) Zebrafish DNA sequence from clone CH211-278N7 in ...    44   8.2    1
(BX248120) Zebrafish DNA sequence from clone CH211-160J6 in ...    44   8.2    1
(BT059020) Salmo salar clone ssal-rgf-520-248 Interferon reg...    44   8.2    1
(BC093216) Danio rerio zgc:112138, mRNA (cDNA clone MGC:1121...    44   8.2    1
(AB075928) Danio rerio CNR family (zCNRv1, zCNRv2, zCNRv3, z...    44   8.2    1
(AL844161) Mouse DNA sequence from clone RP23-343K11 on chro...    44   8.2    1
(AC170189) Mus musculus BAC clone RP23-103L12 from chromosom...    44   8.2    1
(AC127685) Mus musculus BAC clone RP24-176M3 from chromosome...    44   8.2    1
(AC126030) Mus musculus BAC clone RP23-452N11 from chromosom...    44   8.2    1
(AC123935) Mus musculus BAC clone RP23-354J3 from chromosome...    44   8.2    1
(AC205921) Pongo abelii BAC clone CH276-479M4 from chromosom...    44   8.2    1
(AC200676) Pongo abelii BAC clone CH276-308O15 from chromoso...    44   8.2    1
(EF146999) Populus trichocarpa clone WS01225_O08.                  44   8.2    1
(AL831770) Human DNA sequence from clone RP13-297M11 on chro...    44   8.2    1
(AC109781) Homo sapiens 3 BAC RP11-317G9 (Roswell Park Cance...    44   8.2    1
(AC080033) Homo sapiens chromosome 8, clone RP11-885J16, com...    44   8.2    1
(AC008919) Homo sapiens chromosome 5 clone CTD-2276O24, comp...    44   8.2    1
(AC159567) Otolemur garnettii clone CH256-366N13, WORKING DR...    44   8.2    1
(AC158780) Mus musculus chromosome 1 clone RP23-182E14 map 1...    44   8.2    1
(AC152793) Bos taurus clone CH240-14J16, *** SEQUENCING IN P...    44   8.2    1
(AC147582) Otolemur garnettii clone CH256-374B11, WORKING DR...    44   8.2    1
(AC147532) Otolemur garnettii clone CH256-514J15, WORKING DR...    44   8.2    1
(AC119027) Rattus norvegicus clone CH230-457H17, *** SEQUENC...    44   8.2    1
(AC097570) Rattus norvegicus clone CH230-67I19, *** SEQUENCI...    44   8.2    1
(FP312702) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.2    1
(CU993804) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.2    1
(CU929740) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.2    1
(CU914311) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.2    1
(CU550659) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.2    1
(CU468596) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.2    1
(CT027741) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   8.2    1
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1.     44   8.2    1
(CR759823) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.2    1
(AC233417) Solanum tuberosum chromosome 1 clone RH066J10, **...    44   8.2    1
(AC232093) Solanum tuberosum chromosome 1 clone RH142J23, **...    44   8.2    1
(AC174704) Bos taurus clone CH240-295D15, WORKING DRAFT SEQU...    44   8.2    1
(AC008811) Homo sapiens chromosome 5 clone CTD-2096K17, WORK...    44   8.2    1
(EF490848) Lepeophtheirus salmonis clone LS0029 60S ribosoma...    44   8.2    1
(ET937027) CHO_OF103xj15f2.ab1 CHO_OF Nicotiana tabacum geno...    44   8.2    1
(ER827253) POTKF24TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   8.2    1
(EI836318) POTE638TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   8.2    1
(CE244618) tigr-gss-dog-17000373326801 Dog Library Canis lup...    44   8.2    1
(BX961009) Reverse strand read from insert in 5'HPRT inserti...    44   8.2    1
(BX181594) Danio rerio genomic clone DKEY-192E24, genomic su...    44   8.2    1
(DY890108) CeleSEQ7175 Cunninghamella elegans pBluescript (E...    44   8.2    1
(DY888436) CeleSEQ5414 Cunninghamella elegans pBluescript (E...    44   8.2    1
(DY887400) CeleSEQ3399 Cunninghamella elegans pBluescript (E...    44   8.2    1
(DW582480) EST_ssal_rgb2_46899 rgb2 Salmo salar cDNA clone s...    44   8.2    1
(DT472224) WS01225.BR.1_O08 PT-GT-FL-A-3 Populus trichocarpa...    44   8.2    1
(CV260002) WS02012.B21_O01 PTxN-IB-N-A-11 Populus trichocarp...    44   8.2    1
(CV236887) WS01225.B21.1_O08 PT-GT-FL-A-3 Populus trichocarp...    44   8.2    1
(CO914297) AGENCOURT_30547772 NIH_ZGC_19 Danio rerio cDNA cl...    44   8.2    1
(CA060100) ssalrgb513012 mixed_tissue Salmo salar cDNA, mRNA...    44   8.2    1
(CA057629) ssalrgb507031 mixed_tissue Salmo salar cDNA, mRNA...    44   8.2    1
(CA054745) ssalrgb523343 mixed_tissue Salmo salar cDNA, mRNA...    44   8.2    1
(GH014615) G1220P147FP6.T0 Neurospora crassa cDNA - 1 hour O...    44   8.2    1
(GE921649) G1176P17FB16.T0 Neurospora crassa cDNA - 1 hour O...    44   8.2    1
(GE782417) EST_ssal_rgf_837272 ssalrgf mixed_tissue full-len...    44   8.2    1
(CL938302) OA_ABa0049L15.r OA_ABa Oryza australiensis genomi...    38   8.9    2
(AC018580) Homo sapiens clone RP11-3P17, WORKING DRAFT SEQUE...    42   8.9    3
(AC010719) Homo sapiens BAC clone CTD-2227E11 from 7, comple...    42   9.3    4

>(AY392436) Dictyostelium discoideum synaptobrevin gene, complete
           cds.
          Length = 1174

 Score =  565 bits (285), Expect(3) = 0.0
 Identities = 285/285 (100%)
 Strand = Plus / Plus


Query: 82  agttaataaagtaaaacaaactcaacaacaagttgatgatgttacaaataccatgcacat 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agttaataaagtaaaacaaactcaacaacaagttgatgatgttacaaataccatgcacat 457


Query: 142 tgcagttggtaaaatgttagataatcaacaaaaagtttcagaattaacagataagagtga 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgcagttggtaaaatgttagataatcaacaaaaagtttcagaattaacagataagagtga 517


Query: 202 aaatatgaaacaaggtgctcaacaattcaaaaagaagactaatgaaatcaaacgtttaat 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaatatgaaacaaggtgctcaacaattcaaaaagaagactaatgaaatcaaacgtttaat 577


Query: 262 gtggtgtagaaatataaaacttactcttatcattattgcagtagttgtgctcttattggt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gtggtgtagaaatataaaacttactcttatcattattgcagtagttgtgctcttattggt 637


Query: 322 tgttattattgtaccaattgttctcaaatttacataaatcaattt 366
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgttattattgtaccaattgttctcaaatttacataaatcaattt 682

 Score =  167 bits (84), Expect(3) = 0.0
 Identities = 84/84 (100%)
 Strand = Plus / Plus


Query: 609 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tcattttttatatacagtgcaaactatagtatttaaacaatagcacacaaatatatatat 925


Query: 669 ttgtaaatataataacccaatatc 692
           ||||||||||||||||||||||||
Sbjct: 926 ttgtaaatataataacccaatatc 949

 Score = 61.9 bits (31), Expect(3) = 0.0
 Identities = 31/31 (100%)
 Strand = Plus / Plus


Query: 754  tcaaatatgtcattatttatagacttatata 784
            |||||||||||||||||||||||||||||||
Sbjct: 1009 tcaaatatgtcattatttatagacttatata 1039

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 655,651,915
Number of extensions: 42227790
Number of successful extensions: 3704731
Number of sequences better than 10.0: 179
Length of query: 786
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 762
Effective length of database: 102,084,959,077
Effective search space: 77788738816674
Effective search space used: 77788738816674
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U05712-1 (Contig-U05712-1Q) /CSM_Contig/Contig-U05712-1Q.Seq.d
         (786 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GB3) RecName: Full=Synaptobrevin-B;                                53   1e-05
AF484091_1(AF484091|pid:none) Lymnaea stagnalis synaptobrevin is...    46   0.001
AE013599_1084(AE013599|pid:none) Drosophila melanogaster chromos...    45   0.002
AE013599_1083(AE013599|pid:none) Drosophila melanogaster chromos...    45   0.002
AB077367_1(AB077367|pid:none) Halocynthia roretzi HrCellubrevin ...    45   0.003
(Q60WU2) RecName: Full=Synaptobrevin-1; AltName: Full=Synaptobre...    44   0.004
AE014296_328(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.004
AE014296_330(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.004
AE014296_326(AE014296|pid:none) Drosophila melanogaster chromoso...    44   0.004
(Q62442) RecName: Full=Vesicle-associated membrane protein 1;   ...    44   0.006
BC071402_1(BC071402|pid:none) Danio rerio vesicle-associated mem...    44   0.006
AK013893_1(AK013893|pid:none) Mus musculus 12 days embryo head c...    44   0.006
(Q0V7N0) RecName: Full=Vesicle-associated membrane protein 1;   ...    44   0.006
AB464344_1(AB464344|pid:none) Synthetic construct DNA, clone: pF...    44   0.008
AL645527_2(AL645527|pid:none) Mouse DNA sequence from clone RP23...    44   0.008
AY892578_1(AY892578|pid:none) Synthetic construct Homo sapiens c...    44   0.008
(P63024) RecName: Full=Vesicle-associated membrane protein 3;   ...    44   0.008
(P63044) RecName: Full=Vesicle-associated membrane protein 2;   ...    44   0.008
(Q9N0Y0) RecName: Full=Vesicle-associated membrane protein 2;   ...    44   0.008
BC157185_1(BC157185|pid:none) Xenopus tropicalis hypothetical pr...    44   0.008
AJ133104_1(AJ133104|pid:none) Rattus norvegicus mRNA for vesicle...    44   0.008
BC084220_1(BC084220|pid:none) Xenopus laevis hypothetical LOC495...    44   0.008
(P47194) RecName: Full=Synaptobrevin;  &S40153(S40153) &X74748_1...    44   0.008
(P63026) RecName: Full=Vesicle-associated membrane protein 2;   ...    44   0.008
BC005941_1(BC005941|pid:none) Homo sapiens vesicle-associated me...    44   0.008
(Q2KJD2) RecName: Full=Vesicle-associated membrane protein 3;   ...    44   0.008
AJ549240_1(AJ549240|pid:none) Oryza sativa (japonica cultivar-gr...    43   0.013
AY893939_1(AY893939|pid:none) Synthetic construct Homo sapiens c...    42   0.017
AK296294_1(AK296294|pid:none) Homo sapiens cDNA FLJ61298 complet...    42   0.017
(P13701) RecName: Full=Synaptobrevin; AltName: Full=Synaptic ves...    42   0.017
EF082766_1(EF082766|pid:none) Picea sitchensis clone WS0282_E20 ...    42   0.017
JC1521(JC1521;JN0012) synaptobrevin isoform A - fruit fly (Droso...    42   0.017
(P23763) RecName: Full=Vesicle-associated membrane protein 1;   ...    42   0.017
AK289498_1(AK289498|pid:none) Homo sapiens cDNA FLJ76369 complet...    42   0.017
BT026540_1(BT026540|pid:none) Bos taurus vesicle-associated memb...    42   0.017
AC119418_18(AC119418|pid:none) Medicago truncatula clone mth1-23...    42   0.017
JC1522(JC1522) synaptobrevin isoform B - fruit fly (Drosophila m...    42   0.017
AK303137_1(AK303137|pid:none) Homo sapiens cDNA FLJ57686 complet...    42   0.017
BC023286_1(BC023286|pid:none) Homo sapiens vesicle-associated me...    42   0.017
BT038934_1(BT038934|pid:none) Zea mays full-length cDNA clone ZM...    42   0.017
EU960811_1(EU960811|pid:none) Zea mays clone 228789 vesicle-asso...    42   0.017
EF144704_1(EF144704|pid:none) Populus trichocarpa clone WS01117_...    42   0.022
AM469613_1(AM469613|pid:none) Vitis vinifera contig VV78X032808....    42   0.022
AY851290_1(AY851290|pid:none) Danio rerio VAMP/synaptobrevin mRN...    42   0.022
AF014119_1(AF014119|pid:none) Strongylocentrotus purpuratus vesi...    42   0.029
AY663790_1(AY663790|pid:none) Lateolabrax japonicus vesicle-asso...    42   0.029
BC061396_1(BC061396|pid:none) Xenopus tropicalis vesicle-associa...    42   0.029
AC003974_20(AC003974|pid:none) Arabidopsis thaliana chromosome 2...    42   0.029
AF151536_1(AF151536|pid:none) Strongylocentrotus purpuratus vesi...    42   0.029
AF015485_1(AF015485|pid:none) Strongylocentrotus purpuratus vesi...    42   0.029
AX588261_1(AX588261|pid:none) Sequence 136 from Patent WO02083898.     42   0.029
CR855898_1(CR855898|pid:none) Paramecium tetraurelia macronuclea...    42   0.029
(O48850) RecName: Full=Vesicle-associated membrane protein 725; ...    42   0.029
DQ016990_1(DQ016990|pid:none) Ipomoea batatas putative synaptobr...    42   0.029
AK069165_1(AK069165|pid:none) Oryza sativa Japonica Group cDNA c...    41   0.038
EF653275_1(EF653275|pid:none) Rattus norvegicus vesicle-associat...    41   0.038
U16801_1(U16801|pid:none) Xenopus laevis synaptobrevin SYBII mRN...    41   0.038
BC094126_1(BC094126|pid:none) Xenopus laevis vesicle-associated ...    41   0.038
(P47192) RecName: Full=Vesicle-associated membrane protein 722; ...    41   0.038
(P47193) RecName: Full=Vesicle-associated membrane protein 2;   ...    41   0.038
AK175647_1(AK175647|pid:none) Arabidopsis thaliana mRNA for puta...    41   0.038
M90418_1(M90418|pid:none) Arabidopsis thaliana synaptobrevin-rel...    41   0.038
(Q63666) RecName: Full=Vesicle-associated membrane protein 1;   ...    41   0.038
AF498262_1(AF498262|pid:none) Rattus norvegicus vesicle associat...    41   0.038
EF084985_1(EF084985|pid:none) Picea sitchensis clone WS0297_B03 ...    41   0.038
AK176359_1(AK176359|pid:none) Arabidopsis thaliana mRNA for puta...    41   0.049
BC076364_1(BC076364|pid:none) Danio rerio zgc:92912, mRNA (cDNA ...    41   0.049
U85805_1(U85805|pid:none) Hirudo medicinalis synaptobrevin homol...    41   0.049
AK059902_1(AK059902|pid:none) Oryza sativa Japonica Group cDNA c...    40   0.064
EU284893_1(EU284893|pid:none) TSA: Elaeis guineensis EgEfMPOB000...    40   0.064
(Q9MAS5) RecName: Full=Putative vesicle-associated membrane prot...    40   0.064
BC092206_1(BC092206|pid:none) Rattus norvegicus vesicle-associat...    40   0.084
AM467632_1(AM467632|pid:none) Vitis vinifera contig VV78X147447....    40   0.11
CU928171_559(CU928171|pid:none) Kluyveromyces thermotolerans str...    40   0.11
A34288(A34288) vesicle-associated membrane protein 1 - rat  &M24...    40   0.11
CR954206_343(CR954206|pid:none) Ostreococcus tauri strain OTTH05...    40   0.11
AY812763_1(AY812763|pid:none) Schistosoma japonicum SJCHGC02090 ...    39   0.14
GM754336_1(GM754336|pid:none) Sequence 29 from Patent WO20081168...    39   0.14
AK100212_1(AK100212|pid:none) Oryza sativa Japonica Group cDNA c...    39   0.19
CR380949_12(CR380949|pid:none) Candida glabrata strain CBS138 ch...    39   0.19
AC097446_23(AC097446|pid:none) Oryza sativa (japonica cultivar-g...    39   0.19
AK060093_1(AK060093|pid:none) Oryza sativa Japonica Group cDNA c...    39   0.19
(Q27236) RecName: Full=Synaptobrevin-like protein;  &U30182_1(U3...    39   0.24
FN359081_1(FN359081|pid:none) Schistosoma mansoni genome sequenc...    39   0.24
(Q9LFP1) RecName: Full=Vesicle-associated membrane protein 713; ...    39   0.24
(Q12255) RecName: Full=Vacuolar v-SNARE NYV1;          Short=R-S...    38   0.32
EU964925_1(EU964925|pid:none) Zea mays clone 282584 vesicle-asso...    38   0.32
(Q9M376) RecName: Full=Vesicle-associated membrane protein 727; ...    37   0.55
EF087886_1(EF087886|pid:none) Picea sitchensis clone WS02915_P10...    37   0.71
AK031151_1(AK031151|pid:none) Mus musculus 13 days embryo foreli...    37   0.71
BC071499_1(BC071499|pid:none) Danio rerio vesicle-associated mem...    37   0.71
(O75379) RecName: Full=Vesicle-associated membrane protein 4;   ...    37   0.71
EF083993_1(EF083993|pid:none) Picea sitchensis clone WS0281_L20 ...    37   0.71
BC007019_1(BC007019|pid:none) Homo sapiens vesicle-associated me...    37   0.71
AF044310_1(AF044310|pid:none) Homo sapiens VAMP 4 (VAMP4) mRNA, ...    37   0.71
(P31109) RecName: Full=Synaptobrevin homolog 1;  &M91157_1(M9115...    37   0.93
CR380951_217(CR380951|pid:none) Candida glabrata strain CBS138 c...    36   1.2
CU928168_81(CU928168|pid:none) Kluyveromyces thermotolerans stra...    36   1.2
AE016817_754(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    36   1.2
CR848541_1(CR848541|pid:none) Xenopus tropicalis finished cDNA, ...    36   1.6
CR380953_267(CR380953|pid:none) Candida glabrata strain CBS138 c...    36   1.6
L16243_1(L16243|pid:none) Saccharomyces cerevisiae synaptobrevin...    36   1.6
(P33328) RecName: Full=Synaptobrevin homolog 2;  &S62059(S62059;...    36   1.6
AY365139_1(AY365139|pid:none) Aspergillus niger putative synapto...    36   1.6
CR382121_161(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    35   2.1
(Q92356) RecName: Full=Synaptobrevin homolog 1;  &CU329670_1359(...    35   2.1
AB279870_1(AB279870|pid:none) Aspergillus oryzae Aosnc1 gene for...    35   2.1
BT075071_1(BT075071|pid:none) Osmerus mordax clone omor-eva-513-...    35   2.1
AP007161_360(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    35   2.1
FM992689_38(FM992689|pid:none) Candida dubliniensis CD36 chromos...    35   2.7
BT045914_1(BT045914|pid:none) Salmo salar clone ssal-rgf-536-253...    35   2.7
AY309014_1(AY309014|pid:none) Entamoeba histolytica synaptobrevi...    35   3.5
AE017348_37(AE017348|pid:none) Cryptococcus neoformans var. neof...    35   3.5
AM436644_2(AM436644|pid:none) Vitis vinifera contig VV78X259493....    35   3.5
AX971611_1(AX971611|pid:none) Sequence 2414 from Patent EP1104808.     34   4.6
CP000496_52(CP000496|pid:none) Pichia stipitis CBS 6054 chromoso...    34   6.0
(Q9SIQ9) RecName: Full=Vesicle-associated membrane protein 712; ...    33   7.9

>(Q54GB3) RecName: Full=Synaptobrevin-B;
          Length = 101

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 24/47 (51%), Positives = 31/47 (65%)
 Frame = +2

Query: 134 MHIAVGKMLDNQQKVSELTDKSENMKQGAQQFKKKTNEIKRLMWCRN 274
           MH  +G ML+N  K S L DK+ +M   A+ FKK+T  I+R MWCRN
Sbjct: 28  MHNNIGLMLNNHDKASNLQDKTASMSNNARLFKKQTVTIRRQMWCRN 74

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 565,755,020
Number of extensions: 6805756
Number of successful extensions: 15805
Number of sequences better than 10.0: 117
Number of HSP's gapped: 15793
Number of HSP's successfully gapped: 117
Length of query: 262
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 136
Effective length of database: 637,226,869
Effective search space: 86662854184
Effective search space used: 86662854184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.46  gvh: 0.18  alm: 0.01  top: 0.33  tms: 0.07  mit: 0.34  mip: 0.02
 nuc: 0.24  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: Golgi
	 12.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U05712-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0