| Contig-U05702-1 |
| Contig ID |
Contig-U05702-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
956 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
4512054 |
| End point |
4513010 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U05702 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 8. 2 |
| Homology vs DNA |
Query= Contig-U05702-1 (Contig-U05702-1Q) /CSM_Contig/Contig-U05702-1Q.Seq.d
(956 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU038994) Dictyostelium discoideum slug cDNA, clone SSM251. 908 0.0 1
(C94023) Dictyostelium discoideum slug cDNA, clone SSK714. 908 0.0 1
(AU074855) Dictyostelium discoideum slug cDNA, clone SSM251. 369 1e-97 1
(EJ087003) 1095460115855 Global-Ocean-Sampling_GS-26-01-01-1... 32 0.094 3
(AF474339) Dictyostelium discoideum ABC transporter ABCC.7 (... 40 0.30 3
(CU827120) A BAC library has been constructed from PN40024 g... 44 0.44 2
(CR956392) M.truncatula DNA sequence from clone MTH2-52P12 o... 48 0.64 1
(AC207580) Homo sapiens FOSMID clone ABC12-47840300E24 from ... 48 0.64 1
(AC016682) Homo sapiens BAC clone RP11-62P16 from 2, complet... 48 0.64 1
(ER282175) 1092343403392 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.64 1
(EK106022) 1092963050092 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.64 1
(EK095316) 1092962032056 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.64 1
(EK085738) 1092961147882 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.64 1
(EK077804) 1092961071178 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.64 1
(EJ506281) 1095403709415 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.64 1
(EJ210682) 1092346005531 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.64 1
(EJ110158) 1092343151372 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.64 1
(EC824683) SME00007180 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.64 1
(EC823905) SME00010210 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.64 1
(EC823585) SME00005634 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.64 1
(EC820585) SME00003105 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.64 1
(EC820148) SME00007385 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.64 1
(EC819262) SME00007203 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.64 1
(AM457690) Vitis vinifera contig VV78X263055.10, whole genom... 38 1.0 2
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 1.2 15
(AC208306) Trichinella spiralis BAC clone TS195-37H12 from c... 40 1.2 4
(BE239153) MD0809 Meloidogyne incognita J2 (#MD99-1) Meloido... 44 1.4 2
(CT009546) Mouse DNA sequence from clone RP23-111H19 on chro... 46 2.5 1
(CR956359) Pig DNA sequence from clone CH242-256J18 on chrom... 46 2.5 1
(EU850439) Adineta vaga dihydrogenpyrimidine dehydrogenase g... 46 2.5 1
(EU652316) Adineta vaga dihydrogenpyrimidine dehydrogenase g... 46 2.5 1
(AL844508) Plasmodium falciparum 3D7 chromosome 9. 46 2.5 1
(CR974590) Pig DNA sequence *** SEQUENCING CANCELLED *** fro... 46 2.5 1
(AP010002) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 2.5 1
(AC200916) Strongylocentrotus purpuratus clone R3-1006I04, W... 46 2.5 1
(AC179141) Strongylocentrotus purpuratus clone R3-4012A9, WO... 46 2.5 1
(EK072387) 1092961003761 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.5 1
(EK063667) 1092960103010 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.5 1
(EI362288) GM_WBc0116D21.f GM_WBc Glycine max genomic clone ... 46 2.5 1
(EL509769) H06_PF-SAU3A-T3-M-P22_D.AB1 Blood stage Plasmodiu... 46 2.5 1
(EL509768) H06_PF-SAU3A-T3-M-P22.AB1 Blood stage Plasmodium ... 46 2.5 1
(EL500210) 016_PFLAB1-M-P28B.AB1 Blood stage Plasmodium falc... 46 2.5 1
(BU612598) UI-M-FR0-cbc-m-02-0-UI.r1 NIH_BMAP_FR0 Mus muscul... 46 2.5 1
(FM939935) Brachionus plicatilis EST 5' end, clone sb104P005... 46 2.5 1
(AW820988) RC2-ST0301-240300-016-g02 ST0301 Homo sapiens cDN... 46 2.5 1
(FP016007) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 2.7 3
(AC178446) Strongylocentrotus purpuratus clone R3-3049B15, W... 40 2.7 5
(AC226726) Solanum lycopersicum chromosome 6 clone C06HBa005... 34 3.0 6
(CR847510) Zebrafish DNA sequence from clone CH211-168F7 in ... 44 3.6 6
(AC146153) Pan troglodytes chromosome UNK clone RP43-37C16, ... 32 4.8 2
(AC185345) Pan troglodytes BAC clone CH251-439A19 from chrom... 32 4.8 2
(AC008378) Homo sapiens chromosome 5 clone CTC-209H22, compl... 32 4.9 2
(AC183829) Pan troglodytes BAC clone CH251-288A1 from chromo... 32 4.9 2
(AC183798) Pan troglodytes BAC clone CH251-424F21 from chrom... 32 4.9 2
(AL669821) Human DNA sequence from clone XXbac-116A1 on chro... 32 5.0 2
(AY878058) HIV-1 isolate 04ZASK168B1 from South Africa, comp... 40 5.0 2
(AC010603) Homo sapiens chromosome 5 clone CTB-137N20, WORKI... 32 5.1 2
(AC175699) Tupaia belangeri, clone XX-8220E7, complete seque... 38 5.5 2
(AM428592) Vitis vinifera contig VV78X007288.11, whole genom... 44 5.6 3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 6.1 11
(EG413366) SAAH-aab09f08.b1 Agen 0058 Schmidtea mediterranea... 34 6.5 2
(EG407493) SAAH-aac46h07.b1 Agen 0058 Schmidtea mediterranea... 34 6.5 2
(AM285309) Spiroplasma citri GII3-3X chromosome, contig Cont... 40 6.7 2
(AC166488) Mus musculus chromosome 1, clone RP23-245C4, comp... 38 6.9 3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 6.9 17
(CU078750) Equus caballus GSS, BAC clone CH241-171L17, SP6 e... 36 7.4 2
(ER478410) 1093015250375 Global-Ocean-Sampling_GS-35-01-01-1... 36 7.7 2
(GO295263) CAZC2837.fwd CAZC Teleopsis dalmanni Mid-pupal ey... 40 7.8 2
(GO295262) CAZC2837.rev CAZC Teleopsis dalmanni Mid-pupal ey... 40 7.8 2
(BG165190) 602344053F1 NIH_MGC_89 Homo sapiens cDNA clone IM... 36 8.3 2
(CG730851) 1119130D02.1EL_x1 1119 - RescueMu Grid AA Zea may... 34 8.3 3
(AL440120) T7 end of clone BD0AA010B07 of library BD0AA from... 40 9.3 2
(AC115338) Rattus norvegicus clone CH230-100B7, *** SEQUENCI... 38 9.9 6
>(AU038994) Dictyostelium discoideum slug cDNA, clone SSM251.
Length = 667
Score = 908 bits (458), Expect = 0.0
Identities = 458/458 (100%)
Strand = Plus / Plus
Query: 359 ttaataaaccatatttacgtaattttggtatgttggatgaatttccaattttaaaagaag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ttaataaaccatatttacgtaattttggtatgttggatgaatttccaattttaaaagaag 128
Query: 419 atgttaaaaataatgaaagtatttttaataaagatgttcacaacatggttgttatgggtt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atgttaaaaataatgaaagtatttttaataaagatgttcacaacatggttgttatgggtt 188
Query: 479 catttattggttgtaaagatagtgcaaccaatttccataaagatacaggtgagaatttag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 catttattggttgtaaagatagtgcaaccaatttccataaagatacaggtgagaatttag 248
Query: 539 tatctgttattcatggtaaaaaattcattgttttaattgcaccatctgatgaaactaata 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tatctgttattcatggtaaaaaattcattgttttaattgcaccatctgatgaaactaata 308
Query: 599 ttaaatcaaaattaagtcatgatattgaagttcaattcgattcaaatgatttcggttcac 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttaaatcaaaattaagtcatgatattgaagttcaattcgattcaaatgatttcggttcac 368
Query: 659 caattgaattacatccagctttttctgattgttcaaaaatttatacaacaatcttaactc 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caattgaattacatccagctttttctgattgttcaaaaatttatacaacaatcttaactc 428
Query: 719 aaggtcaatctttattcattccagtcggttggattcactatgttcataatattgatacaa 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaggtcaatctttattcattccagtcggttggattcactatgttcataatattgatacaa 488
Query: 779 ccatttctgtttcatgttggggtaaagaaatgattatg 816
||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccatttctgtttcatgttggggtaaagaaatgattatg 526
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,074,890,579
Number of extensions: 65266947
Number of successful extensions: 5644618
Number of sequences better than 10.0: 73
Length of query: 956
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 932
Effective length of database: 102,084,959,077
Effective search space: 95143181859764
Effective search space used: 95143181859764
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.20 |
| Homology vs Protein |
Query= Contig-U05702-1 (Contig-U05702-1Q) /CSM_Contig/Contig-U05702-1Q.Seq.d
(956 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q55FB9) RecName: Full=JmjC domain-containing protein B; AltName... 259 1e-67
T19023(T19023) hypothetical protein C06H2.3 - Caenorhabditis ele... 81 6e-14
(A2RUC4) RecName: Full=JmjC domain-containing protein C2orf60; ... 69 2e-10
AE014296_162(AE014296|pid:none) Drosophila melanogaster chromoso... 69 2e-10
BC166391_1(BC166391|pid:none) Xenopus tropicalis hypothetical pr... 69 2e-10
CP000113_4294(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 69 2e-10
CP000629_661(CP000629|pid:none) Agrobacterium radiobacter K84 ch... 69 3e-10
(Q9CXT6) RecName: Full=JmjC domain-containing protein 5; AltName... 67 7e-10
AE014296_2421(AE014296|pid:none) Drosophila melanogaster chromos... 67 1e-09
(Q8N371) RecName: Full=JmjC domain-containing protein 5; AltName... 66 2e-09
BC129768_1(BC129768|pid:none) Xenopus laevis hypothetical protei... 65 3e-09
BC087993_1(BC087993|pid:none) Xenopus tropicalis hypothetical pr... 62 2e-08
AY091769_1(AY091769|pid:none) Arabidopsis thaliana AT3g20810/MOE... 62 2e-08
AB025629_12(AB025629|pid:none) Arabidopsis thaliana genomic DNA,... 62 2e-08
CP001504_900(CP001504|pid:none) Burkholderia glumae BGR1 chromos... 61 6e-08
BT049630_1(BT049630|pid:none) Salmo salar clone ssal-sjb-007-184... 61 6e-08
BC092834_1(BC092834|pid:none) Danio rerio zgc:110265, mRNA (cDNA... 60 1e-07
BC153446_1(BC153446|pid:none) Danio rerio zgc:173863, mRNA (cDNA... 59 2e-07
CP001052_366(CP001052|pid:none) Burkholderia phytofirmans PsJN c... 59 2e-07
CU695239_420(CU695239|pid:none) Ralstonia solanacearum strain Mo... 57 1e-06
(P0C872) RecName: Full=JmjC domain-containing protein 7; AltName... 56 2e-06
(Q55DF5) RecName: Full=JmjC domain-containing protein D; AltName... 56 2e-06
CP000113_4486(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 56 2e-06
AC166286_14(AC166286|pid:none) Medicago truncatula clone mth2-17... 56 2e-06
BT080878_1(BT080878|pid:none) Caligus clemensi clone ccle-evs-51... 55 3e-06
BC123960_1(BC123960|pid:none) Xenopus tropicalis jumonji C domai... 55 3e-06
CP000949_3524(CP000949|pid:none) Pseudomonas putida W619, comple... 55 4e-06
CP000712_1620(CP000712|pid:none) Pseudomonas putida F1, complete... 55 5e-06
AK131497_1(AK131497|pid:none) Homo sapiens cDNA FLJ16696 fis, cl... 54 6e-06
(Q6ZMT4) RecName: Full=JmjC domain-containing histone demethylat... 54 6e-06
(Q08BV2) RecName: Full=JmjC domain-containing protein C2orf60 ho... 54 8e-06
(Q4IER0) RecName: Full=Leucine carboxyl methyltransferase 2; ... 54 8e-06
CP000155_2664(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 54 8e-06
(P0C870) RecName: Full=JmjC domain-containing protein 7; AltName... 52 2e-05
CP000548_916(CP000548|pid:none) Burkholderia mallei NCTC 10247 c... 52 2e-05
BX571965_1741(BX571965|pid:none) Burkholderia pseudomallei strai... 52 2e-05
CP000010_946(CP000010|pid:none) Burkholderia mallei ATCC 23344 c... 52 2e-05
AK136209_1(AK136209|pid:none) Mus musculus in vitro fertilized e... 52 3e-05
AK042834_1(AK042834|pid:none) Mus musculus 7 days neonate cerebe... 52 3e-05
AK042327_1(AK042327|pid:none) Mus musculus 3 days neonate thymus... 52 3e-05
(Q3UWM4) RecName: Full=JmjC domain-containing histone demethylat... 52 3e-05
BC132289_1(BC132289|pid:none) Mus musculus RIKEN cDNA 1110034B05... 52 4e-05
AP003265_7(AP003265|pid:none) Oryza sativa Japonica Group genomi... 52 4e-05
(A2RSX7) RecName: Full=JmjC domain-containing protein C2orf60 ho... 52 4e-05
AY812542_1(AY812542|pid:none) Schistosoma japonicum SJCHGC04343 ... 51 7e-05
CP000094_1842(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 51 7e-05
AK136238_1(AK136238|pid:none) Mus musculus in vitro fertilized e... 50 1e-04
AY550981_1(AY550981|pid:none) Rhipicephalus haemaphysaloides hae... 50 1e-04
CP000581_486(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 50 1e-04
AM746676_6645(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 50 1e-04
BC079489_1(BC079489|pid:none) Danio rerio hspb associated protei... 49 2e-04
(Q6AXL5) RecName: Full=HSPB1-associated protein 1 homolog; &BX5... 49 2e-04
BT026336_1(BT026336|pid:none) Bos taurus phospholipase A2, group... 49 2e-04
AP005254_14(AP005254|pid:none) Oryza sativa Japonica Group genom... 49 3e-04
AK226677_1(AK226677|pid:none) Arabidopsis thaliana mRNA for phos... 49 3e-04
AL162459_9(AL162459|pid:none) Arabidopsis thaliana DNA chromosom... 49 3e-04
CT573326_2184(CT573326|pid:none) Pseudomonas entomophila str. L4... 48 6e-04
(Q54LV7) RecName: Full=JmjC domain-containing protein C; AltName... 48 6e-04
CR382132_1167(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 47 7e-04
EU961403_1(EU961403|pid:none) Zea mays clone 235150 hypothetical... 47 7e-04
BT062958_1(BT062958|pid:none) Zea mays full-length cDNA clone ZM... 47 7e-04
(Q08BY5) RecName: Full=JmjC domain-containing protein 4; AltName... 47 0.001
(Q67XX3) RecName: Full=F-box protein At5g06550; &AK175402_1(AK1... 47 0.001
FN357310_46(FN357310|pid:none) Schistosoma mansoni genome sequen... 47 0.001
CP001331_23(CP001331|pid:none) Micromonas sp. RCC299 chromosome ... 47 0.001
AP002543_8(AP002543|pid:none) Arabidopsis thaliana genomic DNA, ... 47 0.001
AC144342_10(AC144342|pid:none) Medicago truncatula clone mth2-10... 47 0.001
AL662922_5(AL662922|pid:none) Mouse DNA sequence from clone RP23... 47 0.001
CP001323_343(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 47 0.001
AK122447_1(AK122447|pid:none) Mus musculus mRNA for mKIAA1111 pr... 47 0.001
AK134137_1(AK134137|pid:none) Mus musculus adult male thymus cDN... 47 0.001
AK040969_1(AK040969|pid:none) Mus musculus adult male aorta and ... 47 0.001
(Q58CU3) RecName: Full=HSPB1-associated protein 1; AltName: Full... 46 0.002
CP001577_365(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 46 0.002
BC061609_1(BC061609|pid:none) Xenopus tropicalis hypoxia-inducib... 46 0.002
AL732374_5(AL732374|pid:none) Human DNA sequence from clone RP13... 45 0.003
AL732374_4(AL732374|pid:none) Human DNA sequence from clone RP13... 45 0.003
BX548172_2(BX548172|pid:none) Zebrafish DNA sequence from clone ... 45 0.003
AM920421_168(AM920421|pid:none) Penicillium chrysogenum Wisconsi... 45 0.003
(P59723) RecName: Full=Hypoxia-inducible factor 1-alpha inhibito... 45 0.003
FN359294_2(FN359294|pid:none) Schistosoma mansoni genome sequenc... 45 0.003
CP001574_267(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 45 0.004
CP000555_1811(CP000555|pid:none) Methylibium petroleiphilum PM1,... 45 0.004
AF400663_1(AF400663|pid:none) Homo sapiens PASS1 mRNA, complete ... 45 0.004
CP001574_266(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 45 0.004
(Q96EW2) RecName: Full=HSPB1-associated protein 1; AltName: Full... 45 0.004
AM475115_1(AM475115|pid:none) Vitis vinifera contig VV78X137407.... 45 0.004
AP007154_280(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 45 0.005
EU836304_1(EU836304|pid:none) Peromyscus maniculatus bairdii iso... 45 0.005
A96812(A96812) protein F3F9.18 [imported] - Arabidopsis thaliana... 45 0.005
EU836303_1(EU836303|pid:none) Peromyscus polionotus subgriseus i... 44 0.006
CP001325_389(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 44 0.006
U70849_11(U70849|pid:none) Caenorhabditis elegans cosmid F29B9, ... 44 0.006
T29935(T29935) hypothetical protein F29B9.2 - Caenorhabditis ele... 44 0.006
AM269990_22(AM269990|pid:none) Aspergillus niger contig An01c044... 44 0.006
(Q5BKC6) RecName: Full=HSPB1-associated protein 1; AltName: Full... 44 0.006
(Q6C423) RecName: Full=JmjC domain-containing histone demethylat... 44 0.006
AL833774_7(AL833774|pid:none) Mouse DNA sequence from clone RP23... 44 0.008
AM920437_1684(AM920437|pid:none) Penicillium chrysogenum Wiscons... 44 0.008
AP004231_18(AP004231|pid:none) Oryza sativa Japonica Group genom... 44 0.011
AP006618_4076(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 44 0.011
(Q2U6D4) RecName: Full=Leucine carboxyl methyltransferase 2; ... 44 0.011
EU836307_1(EU836307|pid:none) Peromyscus californicus insignis i... 44 0.011
(Q9VHH9) RecName: Full=JmjC domain-containing histone demethylat... 43 0.014
AE014297_896(AE014297|pid:none) Drosophila melanogaster chromoso... 43 0.014
BT009941_1(BT009941|pid:none) Drosophila melanogaster SD04170 fu... 43 0.014
CP001160_371(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 43 0.018
(Q8BK58) RecName: Full=HSPB1-associated protein 1; AltName: Full... 43 0.018
BX537168_4(BX537168|pid:none) Zebrafish DNA sequence from clone ... 43 0.018
AC144759_16(AC144759|pid:none) Medicago truncatula clone mth2-15... 43 0.018
AC123596_15(AC123596|pid:none) Medicago truncatula clone mth1-17... 43 0.018
Z29443_5(Z29443|pid:none) Caenorhabditis elegans Cosmid T07C4, c... 42 0.024
CU207366_3514(CU207366|pid:none) Gramella forsetii KT0803 comple... 42 0.024
BC133607_1(BC133607|pid:none) Bos taurus hypoxia inducible facto... 42 0.024
AK023030_1(AK023030|pid:none) Homo sapiens cDNA FLJ12968 fis, cl... 42 0.031
BC130013_1(BC130013|pid:none) Mus musculus hypoxia-inducible fac... 42 0.031
(Q9NWT6) RecName: Full=Hypoxia-inducible factor 1-alpha inhibito... 42 0.031
BC158810_1(BC158810|pid:none) Rattus norvegicus hypoxia-inducibl... 42 0.031
AK000622_1(AK000622|pid:none) Homo sapiens cDNA FLJ20615 fis, cl... 42 0.031
CP000582_457(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 42 0.040
AM270401_49(AM270401|pid:none) Aspergillus niger contig An18c008... 42 0.040
DQ523800_1(DQ523800|pid:none) Homo sapiens group IVB cytosolic p... 41 0.053
BC109272_1(BC109272|pid:none) Homo sapiens jumonji domain contai... 41 0.053
AF121908_1(AF121908|pid:none) Homo sapiens cytosolic phospholipa... 41 0.053
CR382131_550(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 41 0.053
AL136378_3(AL136378|pid:none) Human DNA sequence from clone RP5-... 41 0.053
(Q9H9V9) RecName: Full=JmjC domain-containing protein 4; AltName... 41 0.053
AK022579_1(AK022579|pid:none) Homo sapiens cDNA FLJ12517 fis, cl... 41 0.053
DQ523799_1(DQ523799|pid:none) Homo sapiens group IVB cytosolic p... 41 0.053
AP008217_1137(AP008217|pid:none) Oryza sativa (japonica cultivar... 41 0.069
BT067643_1(BT067643|pid:none) Zea mays full-length cDNA clone ZM... 41 0.069
AC097717_2(AC097717|pid:none) Homo sapiens BAC clone RP11-650N19... 40 0.090
CP000502_163(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 40 0.090
CP001029_242(CP001029|pid:none) Methylobacterium populi BJ001, c... 40 0.12
AL834263_1(AL834263|pid:none) Homo sapiens mRNA; cDNA DKFZp761K1... 40 0.12
AB383946_1(AB383946|pid:none) Synthetic construct DNA, clone: pF... 40 0.12
(O75151) RecName: Full=PHD finger protein 2; AltName: Full=GRC5;... 40 0.12
AM502253_301(AM502253|pid:none) Leishmania infantum chromosome 35. 40 0.15
CU633901_169(CU633901|pid:none) Podospora anserina genomic DNA c... 40 0.15
CP000703_263(CP000703|pid:none) Staphylococcus aureus subsp. aur... 39 0.20
CP000594_155(CP000594|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.20
CU179680_88(CU179680|pid:none) Mycoplasma agalactiae PG2 chromos... 39 0.20
CP000595_128(CP000595|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.26
BT067227_1(BT067227|pid:none) Zea mays full-length cDNA clone ZM... 39 0.34
CP000081_290(CP000081|pid:none) Leishmania major chromosome 35, ... 39 0.34
CP000927_1836(CP000927|pid:none) Caulobacter sp. K31, complete g... 38 0.45
AM920439_48(AM920439|pid:none) Penicillium chrysogenum Wisconsin... 38 0.45
AM424591_2(AM424591|pid:none) Vitis vinifera contig VV78X035889.... 38 0.45
AK172995_1(AK172995|pid:none) Mus musculus mRNA for mKIAA0662 pr... 38 0.58
(Q9WTU0) RecName: Full=PHD finger protein 2; AltName: Full=GRC5;... 38 0.58
AF043726_1(AF043726|pid:none) Mus musculus PHD-finger protein (G... 38 0.58
T22137(T22137) hypothetical protein F43G6.6 - Caenorhabditis ele... 37 0.76
CP000934_3559(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 37 0.76
AY345239_1(AY345239|pid:none) Homo sapiens hypothetical protein ... 37 0.76
AP007151_1254(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 37 0.76
AM408590_145(AM408590|pid:none) Mycobacterium bovis BCG Pasteur ... 37 0.76
AM270030_28(AM270030|pid:none) Aspergillus niger contig An02c036... 37 0.99
AE014185_131(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.99
AK052144_1(AK052144|pid:none) Mus musculus 12 days embryo eyebal... 37 0.99
AF528164_1(AF528164|pid:none) Mus musculus strain 129/Sv chromos... 37 1.3
AC092075_12(AC092075|pid:none) Oryza sativa chromosome 3 BAC OSJ... 37 1.3
EU255911_15(EU255911|pid:none) Lactococcus lactis subsp. lactis ... 36 1.7
(Q6PFM0) RecName: Full=Histone arginine demethylase JMJD6; ... 36 1.7
CP000384_5229(CP000384|pid:none) Mycobacterium sp. MCS, complete... 36 1.7
BC057498_1(BC057498|pid:none) Danio rerio jumonji domain contain... 36 1.7
AL844509_38(AL844509|pid:none) Plasmodium falciparum 3D7 chromos... 36 2.2
AL844505_27(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 36 2.2
AL844507_240(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.9
CU638744_146(CU638744|pid:none) Podospora anserina genomic DNA c... 35 2.9
CP001087_539(CP001087|pid:none) Desulfobacterium autotrophicum H... 35 2.9
AL035476_23(AL035476|pid:none) Plasmodium falciparum MAL4P3. &A... 35 2.9
CR382138_749(CR382138|pid:none) Debaryomyces hansenii strain CBS... 35 2.9
AK176202_1(AK176202|pid:none) Arabidopsis thaliana mRNA, complet... 35 3.8
CP000058_4769(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 35 3.8
(Q9ERI5) RecName: Full=Histone arginine demethylase JMJD6; ... 35 4.9
AF304118_1(AF304118|pid:none) Mus musculus apoptotic cell cleara... 35 4.9
AB383913_1(AB383913|pid:none) Synthetic construct DNA, clone: pF... 35 4.9
EF527404_1(EF527404|pid:none) Mus musculus phosphatidylserine re... 35 4.9
CP000656_335(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, co... 35 4.9
(Q58DS6) RecName: Full=Histone arginine demethylase JMJD6; ... 35 4.9
CR954208_328(CR954208|pid:none) Ostreococcus tauri strain OTTH05... 35 4.9
EF527407_1(EF527407|pid:none) Homo sapiens phosphatidylserine re... 35 4.9
AK021780_1(AK021780|pid:none) Homo sapiens cDNA FLJ11718 fis, cl... 35 4.9
BC047003_1(BC047003|pid:none) Homo sapiens jumonji domain contai... 35 4.9
BC079012_1(BC079012|pid:none) Rattus norvegicus jumonji domain c... 35 4.9
AB073711_1(AB073711|pid:none) Homo sapiens mRNA for phosphatidyl... 35 4.9
AM502244_126(AM502244|pid:none) Leishmania infantum chromosome 26. 34 6.4
CP001503_1807(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 34 6.4
CP000087_46(CP000087|pid:none) Rickettsia bellii RML369-C, compl... 34 6.4
FN392321_28(FN392321|pid:none) Pichia pastoris GS115 chromosome ... 34 8.4
AY815292_1(AY815292|pid:none) Schistosoma japonicum SJCHGC01815 ... 34 8.4
CP001330_45(CP001330|pid:none) Micromonas sp. RCC299 chromosome ... 34 8.4
CP001326_219(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 34 8.4
>(Q55FB9) RecName: Full=JmjC domain-containing protein B; AltName:
Full=Jumonji domain-containing protein B;
Length = 286
Score = 259 bits (661), Expect = 1e-67
Identities = 131/274 (47%), Positives = 188/274 (68%), Gaps = 27/274 (9%)
Frame = +1
Query: 70 VCQVERNDVENLDKELFYSYIKSNKPVVFEKYRS--QAIEKWT-PDYLLSIIG-DREVHV 237
+ ++ERN+ +N++KELFY Y+ N+P++F K+ + +A+ KW P+YL++IIG D V V
Sbjct: 8 IIEIERNNNKNIEKELFYKYLNENEPIIFTKFSTDWEALSKWNDPNYLINIIGNDHIVDV 67
Query: 238 NMCTFGSM-SDIVPMKFSEYLNKTLKNEFPINDSNGERIKKINKPYLRNFGMLDEFPILK 414
N C+FG DI+ +KFSE+++K++ N+F D NG +IKK+NKPYLRNF M ++FPI +
Sbjct: 68 NKCSFGGYYKDIIKIKFSEFISKSINNQFDNFDLNGNKIKKVNKPYLRNFEMFEDFPIFE 127
Query: 415 EDVKNNESIFNKDVHNMVVMGSFIGCKDSATNFHKDTGENLVSVIHGKKFIVLIAPSDET 594
+D+ N + IF+KD HN++V +FIG SAT+FH DTG+NLV+VI G KFIV+I+P+D
Sbjct: 128 QDI-NCDIIFDKDKHNLIVKRAFIGSVGSATSFHIDTGDNLVTVIKGCKFIVMISPNDSK 186
Query: 595 NIKSKLSHDIEVQFDSND-FGSPIELHPAFSDCSKIYTTILTQGQSLFIPVGWIHYVHNI 771
+ + S +IE+ F+ ND G P+E HPAFS+C IY T+L +G+SLFIP W HYVHNI
Sbjct: 187 FLDFQKSREIEISFNQNDNDGIPLEYHPAFSNCKYIYKTLLRKGESLFIPNNWTHYVHNI 246
Query: 772 ---------------------DTTISVSCWGKEM 810
+ TISVSCWGK +
Sbjct: 247 SDHDDNFNEDNNNNNNCNNNNNLTISVSCWGKSI 280
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,207,866,042
Number of extensions: 22530989
Number of successful extensions: 63981
Number of sequences better than 10.0: 194
Number of HSP's gapped: 63856
Number of HSP's successfully gapped: 196
Length of query: 318
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 190
Effective length of database: 630,818,299
Effective search space: 119855476810
Effective search space used: 119855476810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
2 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |