>Contig-U05695-1 (Contig-U05695-1Q) /CSM_Contig/Contig-U05695-1Q.Seq.d
ACATAAATTTACACATACACATTTACATATAAATAAACTTTCAACACACA
CGCATATATATATATATAATAACTAAAAAATGAAGTTAGTTGCTATGGTA
TTAGCAAAAAGAAAAGGGGATTTATTAGAAATTGCCTGTGATTTATCACA
ATTTGGTTTCTTTGAAAAGGGAACTGTTAAAGAAGTAATAATAGCAGCAA
GTAAAATTTTTATAAATAAATTCNATCCAAACACAAGACATTCAGTACCA
TATGAAGATTATATCTGTTTTATAGATGTTAGAGCTGAATTTGGTGGTGT
TGTATTTACAGATAAAGAATATCCAGAAAGAGTAGCAGCAAGATTATTAT
CGGAAATGATGAATGGTTATGTAAAGAAAACTCAAGGTATTATTGGTGCA
CCATATCCAGAATTACAAGGTATATTTAAAAATTCGGATCCAAAAGCAAA
TGATAAAATTTTAGAAGTTCAAAATCAAGTGAATGAAGTCACTTCAATTA
TGCATAAAAATATTGATGTTGCTTTAGGTAATACTGAAAAAATGGAGACC
CTATTAGAAACTTCTGATGATTTAAGCACAAGAAGTAAATTATTTTTAAA
ACAAGCTAAA

est1=SSK653F,1,611

hkfththlhinklsththiyiynn*KMKLVAMVLAKRKGDLLEIACDLSQFGFFEKGTVK
EVIIAASKIFINKFXPNTRHSVPYEDYICFIDVRAEFGGVVFTDKEYPERVAARLLSEMM
NGYVKKTQGIIGAPYPELQGIFKNSDPKANDKILEVQNQVNEVTSIMHKNIDVALGNTEK
METLLETSDDLSTRSKLFLKQAK

Frame A:
t*iytytftyk*tfnthayiyi**lknevscygiskkkrgfirncl*fitiwfl*kgnc*
rsnnssk*nfyk*ixskhktfsti*rlylfyrc*s*iwwcciyr*risrkssskiiignd
ewlckensryywctisritryi*kfgsksk**nfrssksse*shfnya*ky*ccfr*y*k
ngdpirnf**fkhkk*iifkts*


Frame B:
hkfththlhinklsththiyiynn*KMKLVAMVLAKRKGDLLEIACDLSQFGFFEKGTVK
EVIIAASKIFINKFXPNTRHSVPYEDYICFIDVRAEFGGVVFTDKEYPERVAARLLSEMM
NGYVKKTQGIIGAPYPELQGIFKNSDPKANDKILEVQNQVNEVTSIMHKNIDVALGNTEK
METLLETSDDLSTRSKLFLKQAK


Frame C:
inlhihiyi*infqhtriyiyiitkk*s*llwy*qkekgiy*klpviyhnlvslkrellk
k***qqvkfl*insiqtqdiqyhmkiisvl*mlelnlvvlylqikniqke*qqdyyrk**
mvm*rklkvllvhhiqnykvylkiriqkqmikf*kfkik*mkslqlcikilmll*vilkk
wrpy*kllmi*aqevnyf*nkl

Query= Contig-U05695-1 (Contig-U05695-1Q)
/CSM_Contig/Contig-U05695-1Q.Seq.d
         (610 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05695-1 (Contig-U05695-1Q) /CSM_Contig/Conti...  1068  0.0
Contig-U10396-1 (Contig-U10396-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U01803-1 (Contig-U01803-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12118-1 (Contig-U12118-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11543-1 (Contig-U11543-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U10900-1 (Contig-U10900-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U10782-1 (Contig-U10782-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U10191-1 (Contig-U10191-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Conti...    36  0.043

>Contig-U05695-1 (Contig-U05695-1Q) /CSM_Contig/Contig-U05695-1Q.Seq.d
          Length = 610

 Score = 1068 bits (539), Expect = 0.0
 Identities = 542/542 (100%)
 Strand = Plus / Plus

                                                                       
Query: 69  ataactaaaaaatgaagttagttgctatggtattagcaaaaagaaaaggggatttattag 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  ataactaaaaaatgaagttagttgctatggtattagcaaaaagaaaaggggatttattag 128

                                                                       
Query: 129 aaattgcctgtgatttatcacaatttggtttctttgaaaagggaactgttaaagaagtaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aaattgcctgtgatttatcacaatttggtttctttgaaaagggaactgttaaagaagtaa 188

                                                                       
Query: 189 taatagcagcaagtaaaatttttataaataaattcnatccaaacacaagacattcagtac 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 taatagcagcaagtaaaatttttataaataaattcnatccaaacacaagacattcagtac 248

                                                                       
Query: 249 catatgaagattatatctgttttatagatgttagagctgaatttggtggtgttgtattta 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 catatgaagattatatctgttttatagatgttagagctgaatttggtggtgttgtattta 308

                                                                       
Query: 309 cagataaagaatatccagaaagagtagcagcaagattattatcggaaatgatgaatggtt 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cagataaagaatatccagaaagagtagcagcaagattattatcggaaatgatgaatggtt 368

                                                                       
Query: 369 atgtaaagaaaactcaaggtattattggtgcaccatatccagaattacaaggtatattta 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atgtaaagaaaactcaaggtattattggtgcaccatatccagaattacaaggtatattta 428

                                                                       
Query: 429 aaaattcggatccaaaagcaaatgataaaattttagaagttcaaaatcaagtgaatgaag 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaaattcggatccaaaagcaaatgataaaattttagaagttcaaaatcaagtgaatgaag 488

                                                                       
Query: 489 tcacttcaattatgcataaaaatattgatgttgctttaggtaatactgaaaaaatggaga 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcacttcaattatgcataaaaatattgatgttgctttaggtaatactgaaaaaatggaga 548

                                                                       
Query: 549 ccctattagaaacttctgatgatttaagcacaagaagtaaattatttttaaaacaagcta 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ccctattagaaacttctgatgatttaagcacaagaagtaaattatttttaaaacaagcta 608

             
Query: 609 aa 610
           ||
Sbjct: 609 aa 610


 Score =  105 bits (53), Expect = 6e-23
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                               
Query: 1  acataaatttacacatacacatttacatataaataaactttcaacacacacgc 53
          |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  acataaatttacacatacacatttacatataaataaactttcaacacacacgc 53


>Contig-U10396-1 (Contig-U10396-1Q) /CSM_Contig/Contig-U10396-1Q.Seq.d
          Length = 578

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 447 caaatgataaaattttaga 465
           |||||||||||||||||||
Sbjct: 404 caaatgataaaattttaga 422


>Contig-U01803-1 (Contig-U01803-1Q) /CSM_Contig/Contig-U01803-1Q.Seq.d
          Length = 762

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 199 aagtaaaatttttataaataaat 221
           |||||||| ||||||||||||||
Sbjct: 123 aagtaaaaattttataaataaat 101


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,181
Number of Sequences: 6905
Number of extensions: 11181
Number of successful extensions: 1177
Number of sequences better than 10.0: 129
length of query: 610
length of database: 5,674,871
effective HSP length: 16
effective length of query: 594
effective length of database: 5,564,391
effective search space: 3305248254
effective search space used: 3305248254
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U05695-1 (Contig-U05695-1Q) /CSM_Contig/Contig-U05695-1Q.Seq.d
         (610 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU074423) Dictyostelium discoideum slug cDNA, clone SSK653.      335   1e-87  1
(EJ733933) 1092961054267 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.006  3
(EJ676254) 1092955083055 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.009  3
(FP015865) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.026  1
(BH936635) odg58f05.g1 B.oleracea002 Brassica oleracea genom...    42   0.20   2
(CU466512) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.22   5
(AC226293) Monodelphis domestica clone VMRC18-117F11, WORKIN...    44   0.24   5
(AC184075) Populus trichocarpa clone Pop1-51M14, complete se...    36   0.29   4
(DL264438) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       48   0.41   1
(DJ130887) Method for identification of useful proteins deri...    48   0.41   1
(HA139806) Sequence 1507 from Patent WO2006024892.                 48   0.41   1
(AC131642) Rattus norvegicus clone CH230-10E22, *** SEQUENCI...    48   0.41   1
(AC095092) Rattus norvegicus clone CH230-4H19, WORKING DRAFT...    48   0.41   1
(CP000655) Polynucleobacter necessarius subsp. asymbioticus ...    48   0.41   1
(CE724492) tigr-gss-dog-17000329806028 Dog Library Canis lup...    40   0.56   2
(AC153617) Mus musculus 6 BAC RP23-177G20 (Roswell Park Canc...    40   0.70   5
(CU571222) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.70   5
(BE054702) GA__Ea0004I10f Gossypium arboreum 7-10 dpa fiber ...    44   0.82   2
(AC027394) Homo sapiens chromosome 2 clone RP11-809C9 map 2,...    44   0.97   4
(CP000361) Arcobacter butzleri RM4018, complete genome.            40   1.1    14
(AC231586) Monodelphis domestica clone VMRC18-709P8, WORKING...    44   1.2    3
(EU926921) Bactrocera cucurbitae voucher YSUW95011901 16S ri...    40   1.2    2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   1.6    16
(AB048754) Bactrocera cucurbitae mitochondrial genes for 16S...    40   1.6    2
(AB048748) Bactrocera cucurbitae mitochondrial genes for 16S...    40   1.6    2
(AB035113) Bactrocera cucurbitae mitochondrial genes for 16S...    40   1.6    2
(AB035112) Bactrocera cucurbitae mitochondrial genes for 16S...    40   1.6    2
(AB048746) Bactrocera tau mitochondrial genes for 16S rRNA, ...    40   1.6    2
(AC141481) Mus musculus BAC clone RP23-145E16 from chromosom...    46   1.6    1
(AC150548) Bos taurus  BAC CH240-72J19 (Children's Hospital ...    46   1.6    1
(AC151112) Bos taurus clone CH240-170O10, WORKING DRAFT SEQU...    46   1.6    1
(AC151003) Bos taurus clone CH240-161J10, WORKING DRAFT SEQU...    46   1.6    1
(AC231175) Bos taurus clone CH240-85N4, WORKING DRAFT SEQUEN...    46   1.6    1
(AZ534364) ENTBI11TF Entamoeba histolytica Sheared DNA Entam...    46   1.6    1
(CK215316) FGAS027273 Triticum aestivum FGAS: Library 6 CAP ...    46   1.6    1
(EL919541) NY4Th2_32_H08.b2_A039 NY4 theronts Ichthyophthiri...    36   1.8    2
(AC012429) Homo sapiens clone RP11-8H23, WORKING DRAFT SEQUE...    38   2.1    6
(AX323739) Sequence 227 from Patent WO0192565.                     38   2.5    2
(GM996087) Sequence 227 from Patent EP2014776.                     38   2.5    2
(AC137712) Mus musculus chromosome 6 clone RP23-301C8 map 6,...    40   2.6    4
(CP001091) Actinobacillus pleuropneumoniae serovar 7 str. AP...    34   2.6    2
(CP000569) Actinobacillus pleuropneumoniae L20 serotype 5b c...    34   2.6    2
(AM466222) Vitis vinifera contig VV78X002183.5, whole genome...    38   2.6    2
(EK280660) 1095462293729 Global-Ocean-Sampling_GS-31-01-01-1...    40   2.8    2
(BZ284177) CH230-286K16.TJ CHORI-230 Segment 2 Rattus norveg...    34   2.8    2
(AC093589) Homo sapiens BAC clone RP11-5K10 from 4, complete...    36   3.0    4
(AC153557) Mus musculus 10 BAC RP23-203H20 (Roswell Park Can...    36   3.0    7
(AM448746) Vitis vinifera, whole genome shotgun sequence, co...    30   3.1    6
(EJ676553) 1092955086685 Global-Ocean-Sampling_GS-30-02-01-1...    36   3.2    2
(EK012741) 1092955207614 Global-Ocean-Sampling_GS-31-01-01-1...    30   3.3    3
(EK406145) 1095505003269 Global-Ocean-Sampling_GS-31-01-01-1...    36   3.3    2
(EJ678689) 1092955109097 Global-Ocean-Sampling_GS-30-02-01-1...    36   3.4    2
(EJ209740) 1092345422818 Global-Ocean-Sampling_GS-27-01-01-1...    40   3.4    2
(FH465792) CHO_OF4956xj18f2.ab1 CHO_OF4 Nicotiana tabacum ge...    30   3.4    3
(EK584279) 1095522028325 Global-Ocean-Sampling_GS-32-01-01-1...    40   3.4    2
(EJ082245) 1095460053415 Global-Ocean-Sampling_GS-26-01-01-1...    36   3.5    2
(AC009158) Homo sapiens chromosome 16 clone RP11-67I10, comp...    38   3.5    5
(ER289820) 1092343594712 Global-Ocean-Sampling_GS-34-01-01-1...    36   3.6    2
(EJ297744) 1095388056721 Global-Ocean-Sampling_GS-27-01-01-1...    40   3.6    2
(EK342204) 1095467066619 Global-Ocean-Sampling_GS-31-01-01-1...    40   3.7    2
(EJ718187) 1092959435981 Global-Ocean-Sampling_GS-30-02-01-1...    42   3.7    2
(ER324216) 1092344198708 Global-Ocean-Sampling_GS-34-01-01-1...    40   3.8    2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   3.8    10
(EJ749855) 1092963027309 Global-Ocean-Sampling_GS-30-02-01-1...    32   3.9    3
(FH961736) CHO_OF6774xd04r1.ab1 CHO_OF6 Nicotiana tabacum ge...    30   3.9    3
(AC017093) Homo sapiens BAC clone RP11-511G7 from 5, complet...    36   3.9    6
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    36   4.2    17
(BX322614) Zebrafish DNA sequence from clone CH211-215G1 in ...    34   4.4    7
(AM467439) Vitis vinifera contig VV78X097098.4, whole genome...    38   4.4    2
(AZ301985) Gm_ISb001_056_L13_F ISU Soybean BAC Library (pBel...    40   4.5    2
(AC079112) Homo sapiens BAC clone RP11-67K11 from 2, complet...    38   4.7    3
(AC010825) Homo sapiens clone RP11-5L11, WORKING DRAFT SEQUE...    36   4.9    4
(AC232498) Brassica rapa subsp. pekinensis clone KBrB054D07,...    36   5.7    4
(AC118603) Mus musculus chromosome 16, clone RP24-79L6, comp...    32   5.9    5
(AC181527) Strongylocentrotus purpuratus clone R3-1110F5, WO...    40   5.9    2
(AC010280) Homo sapiens chromosome 5 clone CTC-537E7, comple...    36   6.1    5
(AC159039) Pan troglodytes BAC clone CH251-65A20 from chromo...    36   6.1    4
(AC111028) Mus musculus chromosome 8, clone RP23-221P20, com...    36   6.1    5
(BV600576) S217P60456RB5.T0 Noemie Pan troglodytes troglodyt...    44   6.3    1
(Z28196) S.cerevisiae chromosome XI reading frame ORF YKL196c.     44   6.3    1
(AY558393) Saccharomyces cerevisiae clone FLH111433.01X YKL1...    44   6.3    1
(DL343375) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       44   6.3    1
(DL130971) Bax-responsive genes for drug target identificati...    44   6.3    1
(DJ209824) Method for identification of useful proteins deri...    44   6.3    1
(DJ025879) Genome-wide DNA marker of Saccharomyces cerevisiae.     44   6.3    1
(AX830396) Sequence 1116 from Patent WO03072602.                   44   6.3    1
(AX819366) Sequence 1116 from Patent EP1338608.                    44   6.3    1
(AX595282) Sequence 936 from Patent EP1258494.                     44   6.3    1
(AX536652) Sequence 253 from Patent WO02064766.                    44   6.3    1
(HA289289) Sequence 80444 from Patent WO2006024892.                44   6.3    1
(GP280034) Sequence 12214 from patent US 7504493.                  44   6.3    1
(AR941531) Sequence 253 from patent US 7101990.                    44   6.3    1
(AC191656) Trichinella spiralis BAC clone TS195-10H12 from c...    44   6.3    1
(AC187043) Trichinella spiralis chromosome UNK clone TS195-3...    44   6.3    1
(AP001179) Homo sapiens genomic DNA, chromosome 11q14, clone...    44   6.3    1
(AP000623) Homo sapiens genomic DNA, chromosome 11 clone:CMB...    44   6.3    1
(AL365437) Human DNA sequence from clone RP11-343K13 on chro...    44   6.3    1
(AL354943) Human DNA sequence from clone RP11-160A9 on chrom...    44   6.3    1
(AL135928) Human DNA sequence from clone RP4-534P7 on chromo...    44   6.3    1
(AL121923) Human DNA sequence from clone RP4-698O15 on chrom...    44   6.3    1
(AL121902) Human DNA sequence from clone RP11-80K6 on chromo...    44   6.3    1
(AC223425) Homo sapiens FOSMID clone ABC12-49051200G12 from ...    44   6.3    1
(AC125603) Homo sapiens 12 BAC RP11-497G19 (Roswell Park Can...    44   6.3    1
(AC152621) Bos taurus clone CH240-15P21, WORKING DRAFT SEQUE...    44   6.3    1
(AC130999) Rattus norvegicus clone CH230-54B8, WORKING DRAFT...    44   6.3    1
(AC128725) Rattus norvegicus clone CH230-300I4, *** SEQUENCI...    44   6.3    1
(AC125996) Rattus norvegicus clone CH230-19D1, WORKING DRAFT...    44   6.3    1
(AC115450) Rattus norvegicus clone CH230-210N1, WORKING DRAF...    44   6.3    1
(FP067341) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.3    1
(AC087475) Homo sapiens chromosome 15 clone RP11-358L18 map ...    44   6.3    1
(CT737368) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.3    1
(AP001768) Homo sapiens genomic DNA, chromosome 11q14 clone:...    44   6.3    1
(AL445424) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.3    1
(AL162611) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.3    1
(AC219948) Bos taurus clone CH240-317M11, WORKING DRAFT SEQU...    44   6.3    1
(AC185768) Bos taurus clone RP42-246H17, WORKING DRAFT SEQUE...    44   6.3    1
(AC165577) Bos taurus clone CH240-170M8, WORKING DRAFT SEQUE...    44   6.3    1
(AC025740) Homo sapiens chromosome 12 clone RP11-497G19, WOR...    44   6.3    1
(AC021245) Homo sapiens clone RP11-1E8, WORKING DRAFT SEQUEN...    44   6.3    1
(AC019134) Homo sapiens chromosome 11 clone RP11-586D12, WOR...    44   6.3    1
(EK354019) 1095468355172 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.3    1
(EK278247) 1095462285263 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.3    1
(EJ189330) 1092344176638 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.3    1
(AL351749) Tetraodon nigroviridis genome survey sequence T7 ...    44   6.3    1
(CW636358) OA_ABa0171D08.r OA_ABa Oryza australiensis genomi...    44   6.3    1
(CT171188) Sus scrofa genomic clone PigE-128P10, genomic sur...    44   6.3    1
(CL199772) ZMMBBc0229D18r ZMMBBc (EcoRI) Zea mays subsp. may...    44   6.3    1
(CE303063) tigr-gss-dog-17000360219629 Dog Library Canis lup...    44   6.3    1
(BZ470448) BONLW33TR BO_1.6_2_KB_tot Brassica oleracea genom...    44   6.3    1
(DB666780) Saccharomyces cerevisiae mRNA, clone: Y107_A11_F....    44   6.3    1
(DB662695) Saccharomyces cerevisiae mRNA, clone: Y080_J19_F....    44   6.3    1
(DB660608) Saccharomyces cerevisiae mRNA, clone: Y063_O21_F....    44   6.3    1
(DB648692) Saccharomyces cerevisiae mRNA, clone: S03052-58_B...    44   6.3    1
(DB645573) Saccharomyces cerevisiae mRNA, clone: S03052-39_P...    44   6.3    1
(DB645397) Saccharomyces cerevisiae mRNA, clone: S03052-38_M...    44   6.3    1
(DB645033) Saccharomyces cerevisiae mRNA, clone: S03052-36_I...    44   6.3    1
(DB643671) Saccharomyces cerevisiae mRNA, clone: S03052-28_E...    44   6.3    1
(DB641934) Saccharomyces cerevisiae mRNA, clone: S03052-20_K...    44   6.3    1
(DB641791) Saccharomyces cerevisiae mRNA, clone: S03052-20_A...    44   6.3    1
(DB641122) Saccharomyces cerevisiae mRNA, clone: S03052-17_D...    44   6.3    1
(DB637855) Saccharomyces cerevisiae mRNA, clone: S03052-03_H...    44   6.3    1
(CJ990979) Bursaphelenchus xylophilus cDNA clone: Bx_Kp_02H0...    44   6.3    1
(CU633524) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.4    5
(AC108895) Bos taurus clone RP42-88B14, WORKING DRAFT SEQUEN...    40   6.5    3
(CU856019) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.8    4
(AC147538) Medicago truncatula clone mth2-135c7, complete se...    34   7.1    6
(BJ616260) Xenopus laevis cDNA clone:XL176e07, 5' end.             40   7.1    2
(AC146917) Bos taurus clone CH240-160L22, WORKING DRAFT SEQU...    40   7.1    3
(CU633820) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.2    4
(DB759901) Apis mellifera head cDNA, RIKEN full-length enric...    38   7.5    2
(AC221687) Bos taurus clone CH240-388E18, WORKING DRAFT SEQU...    40   8.0    4
(EF771771) Mus musculus C57BL/6N IST10839A7BBF1 gene trap em...    40   8.5    2
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         36   8.6    7
(AM438353) Vitis vinifera contig VV78X082759.10, whole genom...    42   8.7    4
(CU571112) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   8.7    5
(CQ520143) Sequence 52010 from Patent WO0160860.                   36   9.0    2
(AG917805) Drosophila auraria DNA, clone: DAB1-026I18.R.fa, ...    38   9.2    2
(AC108774) Mus musculus chromosome 1, clone RP23-249J23, com...    38   9.3    3
(AQ381753) RPCI11-135H22.TJ RPCI-11 Homo sapiens genomic clo...    36   9.5    2
(AC234293) Chlorocebus aethiops clone CH252-283G9, WORKING D...    32   9.6    8
(CO372600) tah02g03.x2 Hydra EST -Kiel 4 Hydra vulgaris cDNA...    36   9.8    2
(AM398681) Flavobacterium psychrophilum JIP02/86 complete ge...    32   9.8    16
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    38   9.9    18
(AC149474) Medicago truncatula clone mth2-122l24, complete s...    38   10.0   4
(FP102658) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   10.0   6

>(AU074423) Dictyostelium discoideum slug cDNA, clone SSK653.
          Length = 240

 Score =  335 bits (169), Expect = 1e-87
 Identities = 172/172 (100%)
 Strand = Plus / Plus


Query: 69  ataactaaaaaatgaagttagttgctatggtattagcaaaaagaaaaggggatttattag 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  ataactaaaaaatgaagttagttgctatggtattagcaaaaagaaaaggggatttattag 128


Query: 129 aaattgcctgtgatttatcacaatttggtttctttgaaaagggaactgttaaagaagtaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aaattgcctgtgatttatcacaatttggtttctttgaaaagggaactgttaaagaagtaa 188


Query: 189 taatagcagcaagtaaaatttttataaataaattcnatccaaacacaagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 taatagcagcaagtaaaatttttataaataaattcnatccaaacacaagaca 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 897,626,380
Number of extensions: 59516189
Number of successful extensions: 5089371
Number of sequences better than 10.0: 165
Length of query: 610
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 586
Effective length of database: 102,084,959,077
Effective search space: 59821786019122
Effective search space used: 59821786019122
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U05695-1 (Contig-U05695-1Q) /CSM_Contig/Contig-U05695-1Q.Seq.d
         (610 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001329_337(CP001329|pid:none) Micromonas sp. RCC299 chromosome...   105   1e-21
CR954202_559(CR954202|pid:none) Ostreococcus tauri strain OTTH05...   105   1e-21
(Q9ZRD6) RecName: Full=VAMP-like protein YKT61;          Short=A...   104   2e-21
(O60073) RecName: Full=Synaptobrevin homolog ykt6;          EC=2...   103   3e-21
(O15498) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...   102   6e-21
AY892215_1(AY892215|pid:none) Synthetic construct Homo sapiens c...   102   6e-21
AK223488_1(AK223488|pid:none) Homo sapiens mRNA for SNARE protei...   102   8e-21
EF083433_1(EF083433|pid:none) Picea sitchensis clone WS02719_G11...   101   1e-20
AY375336_1(AY375336|pid:none) Gossypium barbadense fiber NTGP1-r...   101   2e-20
(Q6C537) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...   100   2e-20
CR542008_1(CR542008|pid:none) Homo sapiens full open reading fra...   100   2e-20
AB451317_1(AB451317|pid:none) Homo sapiens YKT6 mRNA for YKT6 v-...   100   3e-20
AF033027_1(AF033027|pid:none) Rattus norvegicus prenylated SNARE...   100   5e-20
(Q5EGY4) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...    98   2e-19
CP000582_45(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ...    97   3e-19
(Q9CQW1) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...    96   6e-19
AK059875_1(AK059875|pid:none) Oryza sativa Japonica Group cDNA c...    95   1e-18
AE014298_1132(AE014298|pid:none) Drosophila melanogaster chromos...    94   2e-18
EU795692_1(EU795692|pid:none) Haemaphysalis longicornis Ykt6 mRN...    94   3e-18
AF076956_1(AF076956|pid:none) Mus musculus prenylated SNARE prot...    94   4e-18
BT073721_1(BT073721|pid:none) Oncorhynchus mykiss clone omyk-evo...    93   5e-18
EU969060_1(EU969060|pid:none) Zea mays clone 325873 VAMP-like pr...    92   1e-17
FM992688_262(FM992688|pid:none) Candida dubliniensis CD36 chromo...    91   2e-17
EU961607_1(EU961607|pid:none) Zea mays clone 236928 VAMP-like pr...    91   3e-17
(Q3T000) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...    91   3e-17
BT055645_1(BT055645|pid:none) Zea mays full-length cDNA clone ZM...    91   3e-17
AL033497_18(AL033497|pid:none) C.albicans cosmid Ca49C10.  &T521...    90   4e-17
(P36015) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...    90   6e-17
CU928168_660(CU928168|pid:none) Kluyveromyces thermotolerans str...    89   1e-16
(Q6P816) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...    89   1e-16
(Q6CSA2) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...    88   2e-16
FN392319_1475(FN392319|pid:none) Pichia pastoris GS115 chromosom...    88   2e-16
CR855902_1(CR855902|pid:none) Paramecium tetraurelia macronuclea...    87   3e-16
BT069565_1(BT069565|pid:none) Zea mays full-length cDNA clone ZM...    87   3e-16
(Q6BSL0) RecName: Full=Synaptobrevin homolog YKT6;          EC=2...    87   4e-16
FN357412_11(FN357412|pid:none) Schistosoma mansoni genome sequen...    87   5e-16
CP000500_154(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    86   6e-16
E88504(E88504)protein B0361.8 [imported] - Caenorhabditis elegans      85   1e-15
U00031_8(U00031|pid:none) Caenorhabditis elegans cosmid B0361, c...    84   2e-15
AY814286_1(AY814286|pid:none) Schistosoma japonicum SJCHGC05685 ...    82   2e-14
FN314336_1(FN314336|pid:none) Schistosoma japonicum isolate Anhu...    82   2e-14
AM270088_15(AM270088|pid:none) Aspergillus niger contig An04c027...    80   3e-14
AK299158_1(AK299158|pid:none) Homo sapiens cDNA FLJ50174 complet...    79   8e-14
AB261089_1(AB261089|pid:none) Entamoeba histolytica gene for v-S...    77   5e-13
(Q54ES8) RecName: Full=Putative synaptobrevin homolog YKT6;     ...    77   5e-13
CU633900_550(CU633900|pid:none) Podospora anserina genomic DNA c...    75   1e-12
AE017351_92(AE017351|pid:none) Cryptococcus neoformans var. neof...    71   3e-11
AP007157_524(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    70   5e-11
AM502237_113(AM502237|pid:none) Leishmania infantum chromosome 19.     65   1e-09
CP000081_208(CP000081|pid:none) Leishmania major chromosome 35, ...    63   6e-09
AM494971_204(AM494971|pid:none) Leishmania braziliensis chromoso...    63   7e-09
AM910989_80(AM910989|pid:none) Plasmodium knowlesi strain H chro...    63   7e-09
AL844508_106(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    62   1e-08
M73025_1(M73025|pid:none) Euplotes crassus ORF1 and ORF2, comple...    52   1e-05
BT041780_1(BT041780|pid:none) Zea mays full-length cDNA clone ZM...    47   3e-04
EF083969_1(EF083969|pid:none) Picea sitchensis clone WS0283_P13 ...    45   0.002
AK031151_1(AK031151|pid:none) Mus musculus 13 days embryo foreli...    44   0.004
(O75379) RecName: Full=Vesicle-associated membrane protein 4;   ...    44   0.004
BC007019_1(BC007019|pid:none) Homo sapiens vesicle-associated me...    44   0.004
CR954206_343(CR954206|pid:none) Ostreococcus tauri strain OTTH05...    44   0.005
AK069165_1(AK069165|pid:none) Oryza sativa Japonica Group cDNA c...    43   0.006
CR848541_1(CR848541|pid:none) Xenopus tropicalis finished cDNA, ...    43   0.006
AF044310_1(AF044310|pid:none) Homo sapiens VAMP 4 (VAMP4) mRNA, ...    43   0.006
AK059902_1(AK059902|pid:none) Oryza sativa Japonica Group cDNA c...    42   0.010
(Q17QI5) RecName: Full=Vesicle-associated membrane protein 7;   ...    42   0.014
(Q5RF94) RecName: Full=Vesicle-associated membrane protein 7;   ...    42   0.014
AK295605_1(AK295605|pid:none) Homo sapiens cDNA FLJ53045 complet...    42   0.014
AK293525_1(AK293525|pid:none) Homo sapiens cDNA FLJ53762 complet...    42   0.014
AK222794_1(AK222794|pid:none) Homo sapiens mRNA for synaptobrevi...    42   0.014
CR940348_37(CR940348|pid:none) Theileria annulata strain Ankara ...    42   0.018
AB261090_1(AB261090|pid:none) Entamoeba histolytica gene for v-S...    42   0.018
AY256852_1(AY256852|pid:none) Entamoeba histolytica synaptobrevi...    40   0.039
(Q9LFP1) RecName: Full=Vesicle-associated membrane protein 713; ...    40   0.052
(Q9Y7L0) RecName: Full=Protein transport protein sec22;  &AL0494...    40   0.052
(O49377) RecName: Full=Vesicle-associated membrane protein 711; ...    40   0.067
BC049034_1(BC049034|pid:none) Danio rerio synaptobrevin-like 1, ...    39   0.088
AM910992_27(AM910992|pid:none) Plasmodium knowlesi strain H chro...    39   0.088
BC088680_1(BC088680|pid:none) Xenopus laevis hypothetical LOC496...    38   0.26
AY814011_1(AY814011|pid:none) Schistosoma japonicum SJCHGC06563 ...    37   0.33
AC159455_16(AC159455|pid:none) Trypanosoma brucei chromosome 5 c...    37   0.33
AM502226_3(AM502226|pid:none) Leishmania infantum chromosome 8.        37   0.33
CT005247_3(CT005247|pid:none) Leishmania major strain Friedlin, ...    37   0.33
FM992691_467(FM992691|pid:none) Candida dubliniensis CD36 chromo...    37   0.44
(Q54GB3) RecName: Full=Synaptobrevin-B;                                37   0.57
(Q9SIQ9) RecName: Full=Vesicle-associated membrane protein 712; ...    37   0.57
CP000501_243(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    37   0.57
CR855907_1(CR855907|pid:none) Paramecium tetraurelia macronuclea...    36   0.74
BT045914_1(BT045914|pid:none) Salmo salar clone ssal-rgf-536-253...    36   0.74
BC157185_1(BC157185|pid:none) Xenopus tropicalis hypothetical pr...    36   0.74
AY892578_1(AY892578|pid:none) Synthetic construct Homo sapiens c...    36   0.97
BC084290_1(BC084290|pid:none) Xenopus laevis hypothetical LOC495...    36   0.97
(P63024) RecName: Full=Vesicle-associated membrane protein 3;   ...    36   0.97
BC005941_1(BC005941|pid:none) Homo sapiens vesicle-associated me...    36   0.97
AL844509_32(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.3
EF147419_1(EF147419|pid:none) Populus trichocarpa clone WS01230_...    35   1.3
AJ566298_1(AJ566298|pid:none) Paramecium tetraurelia macronuclea...    35   1.3
(Q5JJ31) RecName: Full=Isoleucyl-tRNA synthetase;          EC=6....    35   1.7
AX647631_1(AX647631|pid:none) Sequence 1823 from Patent EP1270724.     35   1.7
CR940348_673(CR940348|pid:none) Theileria annulata strain Ankara...    35   1.7
AY851290_1(AY851290|pid:none) Danio rerio VAMP/synaptobrevin mRN...    35   2.2
CP000352_774(CP000352|pid:none) Ralstonia metallidurans CH34, co...    35   2.2
AM462244_5(AM462244|pid:none) Vitis vinifera contig VV78X262367....    35   2.2
DQ848981_1(DQ848981|pid:none) Scophthalmus maximus clone kba735 ...    34   2.8
AK064750_1(AK064750|pid:none) Oryza sativa Japonica Group cDNA c...    34   2.8
BC086925_1(BC086925|pid:none) Mus musculus vesicle-associated me...    34   2.8
(Q9Z2P8) RecName: Full=Vesicle-associated membrane protein 5;   ...    34   2.8
FN317016_1(FN317016|pid:none) Schistosoma japonicum isolate Anhu...    34   3.7
FN357301_25(FN357301|pid:none) Schistosoma mansoni genome sequen...    34   3.7
AX647579_1(AX647579|pid:none) Sequence 1771 from Patent EP1270724.     34   3.7
EZ000028_1(EZ000028|pid:none) TSA: Schistosoma japonicum SJCHGC0...    34   3.7
FN357301_24(FN357301|pid:none) Schistosoma mansoni genome sequen...    34   3.7
AP009178_787(AP009178|pid:none) Nitratiruptor sp. SB155-2 genomi...    34   3.7
CR382138_640(CR382138|pid:none) Debaryomyces hansenii strain CBS...    34   3.7
(Q2KJD2) RecName: Full=Vesicle-associated membrane protein 3;   ...    34   3.7
EF575753_1(EF575753|pid:none) Oryza sativa (indica cultivar-grou...    33   4.8
(Q2KHY2) RecName: Full=Vesicle-associated membrane protein 5;   ...    33   4.8
GM016257_290(GM016257|pid:none) Sequence 1087 from Patent EP1923...    33   4.8
AK065311_1(AK065311|pid:none) Oryza sativa Japonica Group cDNA c...    33   4.8
AE017282_411(AE017282|pid:none) Methylococcus capsulatus str. Ba...    33   6.3
(Q04PF0) RecName: Full=Glutamyl-tRNA synthetase;          EC=6.1...    33   6.3
BT083053_1(BT083053|pid:none) Anoplopoma fimbria clone afim-evh-...    33   6.3
CP000993_701(CP000993|pid:none) Borrelia recurrentis A1, complet...    33   6.3
CP000091_710(CP000091|pid:none) Ralstonia eutropha JMP134 chromo...    33   6.3
(Q27236) RecName: Full=Synaptobrevin-like protein;  &U30182_1(U3...    33   8.2
AY812763_1(AY812763|pid:none) Schistosoma japonicum SJCHGC02090 ...    33   8.2
AL844507_257(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    33   8.2
FN359081_1(FN359081|pid:none) Schistosoma mansoni genome sequenc...    33   8.2
CP000976_713(CP000976|pid:none) Borrelia duttonii Ly, complete g...    33   8.2
AK097297_1(AK097297|pid:none) Homo sapiens cDNA FLJ39978 fis, cl...    33   8.2
FJ177988_1(FJ177988|pid:none) Pithecia pithecia pithecia apolipo...    33   8.2
CP001160_92(CP001160|pid:none) Thalassiosira pseudonana CCMP1335...    33   8.2
AE014187_436(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   8.2

>CP001329_337(CP001329|pid:none) Micromonas sp. RCC299 chromosome 9,
           complete sequence.
          Length = 200

 Score =  105 bits (262), Expect = 1e-21
 Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
 Frame = +2

Query: 80  MKLVAMVLAKRKGDLLEIAC-----DLSQFGFFEKGTVKEVIIAASKIFINKFXPNTRHS 244
           +K+ A+ L K  GD  E  C     D+ +FG+F++ +V+E++   S+  + +  P  R S
Sbjct: 2   VKITALSLWKWNGDNQEPTCLGKTEDVDEFGYFQRSSVREMLTFISRTIVKRTQPGQRQS 61

Query: 245 VPYEDYICFIDVRAEFGGVVFTDKEYPERVAARLLSEMMNGYVKKTQGIIGAPYPELQG- 421
           V  + Y+  +  R     +   DKEYP R A  +L +M + YV +     G  +  + G
Sbjct: 62  VEQDQYLVHVSNRGGLVAIAVMDKEYPTRAAFSVLGKMSDDYVNR----FGDSWKTVSGD 117

Query: 422 -----------IFKNSDPKANDKILEVQNQVNEVTSIMHKNIDVALGNTEKMETLLETSD 568
                      I    DP   DKIL +Q +++E   ++HK ID  L   EK++ L++ S
Sbjct: 118 DPRGNEALAAAIVTYQDPHEADKILRIQRELDETKIVLHKTIDSVLARGEKLDNLVDKST 177

Query: 569 DLSTRSKLFLKQAK 610
           DLS  S++F KQAK
Sbjct: 178 DLSLASQMFYKQAK 191

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 860,931,053
Number of extensions: 16485494
Number of successful extensions: 39078
Number of sequences better than 10.0: 132
Number of HSP's gapped: 38828
Number of HSP's successfully gapped: 132
Length of query: 203
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 81
Effective length of database: 650,044,009
Effective search space: 52653564729
Effective search space used: 52653564729
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

 psg: 0.46  gvh: 0.34  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U05695-1 is cyt