Contig-U05674-1
Contig ID Contig-U05674-1
Contig update 2001. 8.30
Contig sequence
>Contig-U05674-1 (Contig-U05674-1Q) /CSM_Contig/Contig-U05674-1Q.Seq.d
ATAACAAACAAAAAACAGTACCCACACAAAAAATTTATAAATAGTTTAAA
ATAAAAATAATATCAAAATAAACACATATAAATGATTTATTAAAAAAAAA
AAACAATAAAATAAAATAAATTAATAAATAAAAAAAAACAATAAAATTAA
ATAAATTAATAAATAAATTAATAAATAAATAAATAAATAAATAAA

Gap no gap
Contig length 195
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2260575
End point 2260770
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05674
List of clone(s)

est1=SSK428F,1,196
Translated Amino Acid sequence
ITNKKQYPHKKFINSLK*k*yqnkhi*miy*kkktik*nklinkkkq*n*in**in**in
k*ink


Translated Amino Acid sequence (All Frames)
Frame A:
ITNKKQYPHKKFINSLK*k*yqnkhi*miy*kkktik*nklinkkkq*n*in**in**in
k*ink


Frame B:
*qtknsthtknl*iv*nknnikintyk*fikkkkq*nkin**ikknnkik*ink*ink*i
nk*i


Frame C:
nkqktvptqkiyk*fkikiisk*thindllkkknnkik*ink*kktiklnklinklink*
ink*


own update ----------
Homology vs CSM-cDNA -
dna update 2006. 3.27
Homology vs DNA
Query= Contig-U05674-1 (Contig-U05674-1Q) /CSM_Contig/Contig-U05674-1Q.Seq.d
(195 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum23.seq;
ddbjhum3.seq; ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq;
ddbjhum8.seq; ddbjhum9.seq; /db/DDBJNEW.DATA/b/new_ddbjhum.seq;
ddbjpri1.seq; ddbjpri2.seq; /db/DDBJNEW.DATA/b/new_ddbjpri.seq;
ddbjrod1.seq; ddbjrod10.seq; ddbjrod11.seq; ddbjrod12.seq;
ddbjrod13.seq; ddbjrod14.seq; ddbjrod15.seq; ddbjrod16.seq;
ddbjrod17.seq; ddbjrod18.seq; ddbjrod19.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/b/new_ddbjrod.seq;
ddbjmam1.seq; ddbjmam2.seq; /db/DDBJNEW.DATA/b/new_ddbjmam.seq;
ddbjvrt1.seq; ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq;
ddbjvrt6.seq; ddbjvrt7.seq; ddbjvrt8.seq;
/db/DDBJNEW.DATA/b/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq; ddbjinv7.seq;
/db/DDBJNEW.DATA/b/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln12.seq; ddbjpln13.seq; ddbjpln14.seq;
ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq;
ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/b/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct10.seq;
ddbjbct11.seq; ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq;
ddbjbct6.seq; ddbjbct7.seq; ddbjbct8.seq; ddbjbct9.seq;
/db/DDBJNEW.DATA/b/new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq;
ddbjvrl3.seq; ddbjvrl4.seq; /db/DDBJNEW.DATA/b/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/b/new_ddbjphg.seq; ddbjuna.seq;
ddbjgss1.seq; ddbjgss10.seq; ddbjgss100.seq; ddbjgss101.seq;
ddbjgss102.seq; ddbjgss103.seq; ddbjgss104.seq; ddbjgss105.seq;
ddbjgss106.seq; ddbjgss107.seq; ddbjgss108.seq; ddbjgss109.seq;
ddbjgss11.seq; ddbjgss110.seq; ddbjgss111.seq; ddbjgss112.seq;
ddbjgss113.seq; ddbjgss114.seq; ddbjgss115.seq; ddbjgss116.seq;
ddbjgss117.seq; ddbjgss118.seq; ddbjgss119.seq; ddbjgss12.seq;
ddbjgss120.seq; ddbjgss121.seq; ddbjgss122.seq; ddbjgss123.seq;
ddbjgss124.seq; ddbjgss125.seq; ddbjgss126.seq; ddbjgss127.seq;
ddbjgss128.seq; ddbjgss129.seq; ddbjgss13.seq; ddbjgss130.seq;
ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq;
ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq;
ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq;
ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq;
ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq;
ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq;
ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq;
ddbjgss4.seq; ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq;
ddbjgss43.seq; ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq;
ddbjgss47.seq; ddbjgss48.seq; ddbjgss49.seq; ddbjgss5.seq;
ddbjgss50.seq; ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq;
ddbjgss54.seq; ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq;
ddbjgss58.seq; ddbjgss59.seq; ddbjgss6.seq; ddbjgss60.seq;
ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq;
ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq;
ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq;
ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq;
ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq; ddbjgss79.seq;
ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq; ddbjgss82.seq;
ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq; ddbjgss86.seq;
ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq; ddbjgss9.seq;
ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq; ddbjgss93.seq;
ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq; ddbjgss97.seq;
ddbjgss98.seq; ddbjgss99.seq; /db/DDBJNEW.DATA/b/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg53.seq; ddbjhtg54.seq;
ddbjhtg55.seq; ddbjhtg56.seq; ddbjhtg57.seq; ddbjhtg58.seq;
ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg2.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg3.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat15.seq; ddbjpat16.seq; ddbjpat17.seq; ddbjpat18.seq;
ddbjpat19.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq;
ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq; ddbjpat9.seq;
/db/DDBJNEW.DATA/b/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts10.seq;
ddbjsts11.seq; ddbjsts12.seq; ddbjsts2.seq; ddbjsts3.seq;
ddbjsts4.seq; ddbjsts5.seq; ddbjsts6.seq; ddbjsts7.seq; ddbjsts8.seq;
ddbjsts9.seq; /db/DDBJNEW.DATA/b/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/b/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/b/new_est_atha1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/b/new_est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/b/new_est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; est_hum5.seq;
/db/DDBJNEW.DATA/b/new_est_hum1.seq;
/db/DDBJNEW.DATA/b/new_est_hum2.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq; est_rest6.seq;
est_rest7.seq; est_rest8.seq; /db/DDBJNEW.DATA/b/new_est_rest1.seq;
/db/DDBJNEW.DATA/b/new_est_rest2.seq
52,261,165 sequences; 57,889,934,873 total letters

Searchingdone

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] 1143342023.asblm.dna: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] 1143342023.asblm.dna: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

protein update 2009. 6.20
Homology vs Protein
Query= Contig-U05674-1 (Contig-U05674-1Q) /CSM_Contig/Contig-U05674-1Q.Seq.d
(195 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 101,206,773
Number of extensions: 532634
Number of successful extensions: 990
Number of sequences better than 10.0: 0
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 0
Length of query: 65
Length of database: 1,040,966,779
Length adjustment: 37
Effective length of query: 28
Effective length of database: 922,408,234
Effective search space: 25827430552
Effective search space used: 25827430552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

PSORT -
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0