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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05668-1
Contig ID Contig-U05668-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05668-1 (Contig-U05668-1Q) /CSM_Contig/Contig-U05668-1Q.Seq.d
TAGATAATGAAAGTTCAATTGAGCTATCAACAATTTTAGAAACAAATAAA
TCAATTAGATCTTTAAATTTAACTTGCACAGTCTTTAGAAATCTAGGTTC
ACTATTTAATGCTTTAAAGCTTAATAATACTTTATTATATTTAAATTTAT
CAAGAAATTCAATTAAGTTAAAAGATATTATTGATTTTCAATTCTTACTT
GTTAATAATTCATTGATATCTTTAAACCGATCAAATAATGCTATTGAAAC
AAATGAAATGCTTCAATTTTTTAAACACCTCTCTAAAAATAGATCAATTA
AATATTTAGATATTTCAAATAATCCTACAAATGGTGATATTAGATTTCCA
AGTTTTAAAAGAAGAAATCAAAGATTATCTTTGGATATTAAAGTTTCAAA
CTTTTTAAAAAATAATCCATATTTAACAAAAATAACAAATAATATTAAAA
TTGATAAAAATAAACCATATTCAATAACAAAAAAAAAAAAAAA
Gap no gap
Contig length 493
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 297944
End point 298437
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05668
List of clone(s) 

est1=SSK353Z,1,494
Translated Amino Acid sequence 
DNESSIELSTILETNKSIRSLNLTCTVFRNLGSLFNALKLNNTLLYLNLSRNSIKLKDII
DFQFLLVNNSLISLNRSNNAIETNEMLQFFKHLSKNRSIKYLDISNNPTNGDIRFPSFKR
RNQRLSLDIKVSNFLKNNPYLTKITNNIKIDKNKPYSITKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
*imkvqlsyqqf*kqinqldl*i*laqslei*vhylml*sliilyyi*iyqeiqls*kil
lifnsylliih*yl*tdqimllkqmkcfnflntslkidqlni*ifqiilqmvildfqvlk
eeikdylwilkfqtf*kiihi*qk*qiilklikinhiq*qkkkk


Frame B:
r**kfn*ainnfrnk*in*ifkfnlhsl*ksrfti*cfka**yfiifkfikkfn*vkryy
*fsiltc**fidifkpik*cy*nk*nasif*tpl*k*in*ifryfk*sykw*y*iskf*k
kkskiifgy*sfklfkk*sifnknnk*y*n**k*tifnnkkkkk


Frame C:
DNESSIELSTILETNKSIRSLNLTCTVFRNLGSLFNALKLNNTLLYLNLSRNSIKLKDII
DFQFLLVNNSLISLNRSNNAIETNEMLQFFKHLSKNRSIKYLDISNNPTNGDIRFPSFKR
RNQRLSLDIKVSNFLKNNPYLTKITNNIKIDKNKPYSITKKKK
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05668-1 (Contig-U05668-1Q)
/CSM_Contig/Contig-U05668-1Q.Seq.d
         (493 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05668-1 (Contig-U05668-1Q) /CSM_Contig/Conti...   825  0.0
Contig-U11444-1 (Contig-U11444-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U11807-1 (Contig-U11807-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14180-1 (Contig-U14180-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U11470-1 (Contig-U11470-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U11102-1 (Contig-U11102-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U10495-1 (Contig-U10495-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U09163-1 (Contig-U09163-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U05116-1 (Contig-U05116-1Q) /CSM_Contig/Conti...    36  0.034
Contig-U01709-1 (Contig-U01709-1Q) /CSM_Contig/Conti...    36  0.034

>Contig-U05668-1 (Contig-U05668-1Q) /CSM_Contig/Contig-U05668-1Q.Seq.d
          Length = 493

 Score =  825 bits (416), Expect = 0.0
 Identities = 416/416 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagataatgaaagttcaattgagctatcaacaattttagaaacaaataaatcaattagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tagataatgaaagttcaattgagctatcaacaattttagaaacaaataaatcaattagat 60

                                                                       
Query: 61  ctttaaatttaacttgcacagtctttagaaatctaggttcactatttaatgctttaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttaaatttaacttgcacagtctttagaaatctaggttcactatttaatgctttaaagc 120

                                                                       
Query: 121 ttaataatactttattatatttaaatttatcaagaaattcaattaagttaaaagatatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaataatactttattatatttaaatttatcaagaaattcaattaagttaaaagatatta 180

                                                                       
Query: 181 ttgattttcaattcttacttgttaataattcattgatatctttaaaccgatcaaataatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgattttcaattcttacttgttaataattcattgatatctttaaaccgatcaaataatg 240

                                                                       
Query: 241 ctattgaaacaaatgaaatgcttcaattttttaaacacctctctaaaaatagatcaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctattgaaacaaatgaaatgcttcaattttttaaacacctctctaaaaatagatcaatta 300

                                                                       
Query: 301 aatatttagatatttcaaataatcctacaaatggtgatattagatttccaagttttaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatatttagatatttcaaataatcctacaaatggtgatattagatttccaagttttaaaa 360

                                                                   
Query: 361 gaagaaatcaaagattatctttggatattaaagtttcaaactttttaaaaaataat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaagaaatcaaagattatctttggatattaaagtttcaaactttttaaaaaataat 416


>Contig-U11444-1 (Contig-U11444-1Q) /CSM_Contig/Contig-U11444-1Q.Seq.d
          Length = 2483

 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 35  tttagaaacaaataaatcaatta 57
           |||||||||||||||||||||||
Sbjct: 726 tttagaaacaaataaatcaatta 748


 Score = 32.2 bits (16), Expect = 0.53
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 137  atatttaaatttatca 152
            ||||||||||||||||
Sbjct: 1020 atatttaaatttatca 1035


 Score = 28.2 bits (14), Expect = 8.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 140 tttaaatttatcaa 153
           ||||||||||||||
Sbjct: 927 tttaaatttatcaa 940


 Score = 28.2 bits (14), Expect = 8.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 295  caattaaatattta 308
            ||||||||||||||
Sbjct: 1013 caattaaatattta 1026


>Contig-U11807-1 (Contig-U11807-1Q) /CSM_Contig/Contig-U11807-1Q.Seq.d
          Length = 1224

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 141 ttaaatttatcaagaaattcaatt 164
           ||||||||||||||||||| ||||
Sbjct: 413 ttaaatttatcaagaaatttaatt 436


 Score = 30.2 bits (15), Expect = 2.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 139 atttaaatttatcaa 153
           |||||||||||||||
Sbjct: 192 atttaaatttatcaa 206


 Score = 30.2 bits (15), Expect = 2.1
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                              
Query: 131 tttattatatttaaattta 149
           |||||||||||||| ||||
Sbjct: 880 tttattatatttaacttta 862


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,232
Number of Sequences: 6905
Number of extensions: 14232
Number of successful extensions: 1609
Number of sequences better than 10.0: 563
length of query: 493
length of database: 5,674,871
effective HSP length: 16
effective length of query: 477
effective length of database: 5,564,391
effective search space: 2654214507
effective search space used: 2654214507
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 8. 2
Homology vs DNA 
Query= Contig-U05668-1 (Contig-U05668-1Q) /CSM_Contig/Contig-U05668-1Q.Seq.d
         (493 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91498) Dictyostelium discoideum slug cDNA, clone SSK353.        767   0.0    1
(BJ424213) Dictyostelium discoideum cDNA clone:ddv51b23, 5' ...    46   1e-04  3
(BJ423093) Dictyostelium discoideum cDNA clone:ddv48e03, 5' ...    46   1e-04  3
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    34   0.018  13
(ED569840) SBA036_F21.f Sugar beet BAC library USH20 (Code S...    52   0.021  1
(AC193743) Spermophilus tridecemlineatus clone VMRC20-415I2,...    48   0.034  4
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   0.044  10
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    32   0.073  13
(DH437416) Macropus eugenii DNA with T3 primer, fosmid clone...    50   0.082  1
(DH437185) Macropus eugenii DNA with T3 primer, fosmid clone...    50   0.082  1
(AC176888) Strongylocentrotus purpuratus clone R3-31J19, WOR...    36   0.13   4
(AC216785) Spermophilus tridecemlineatus clone VMRC20-198L6,...    48   0.15   4
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    42   0.20   6
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    32   0.22   8
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.31   13
(Z71255) S.cerevisiae chromosome XVI 165536 bp sequence, cen...    48   0.33   1
(Z48951) S.cerevisiae chromosome XVI cosmid 9723.                  48   0.33   1
(X88846) S.cerevisiae citrate synthase gene.                       48   0.33   1
(U31900) Saccharomyces cerevisiae chromosome XVI cosmid 9723...    48   0.33   1
(EA397371) Sequence 46195 from patent US 7314974.                  48   0.33   1
(DL344470) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       48   0.33   1
(DJ210919) Method for identification of useful proteins deri...    48   0.33   1
(DJ025884) Genome-wide DNA marker of Saccharomyces cerevisiae.     48   0.33   1
(HA292105) Sequence 81539 from Patent WO2006024892.                48   0.33   1
(GP280039) Sequence 12219 from patent US 7504493.                  48   0.33   1
(FN357864) Schistosoma mansoni genome sequence supercontig S...    48   0.33   1
(AC123078) Rattus norvegicus clone CH230-7I11, *** SEQUENCIN...    48   0.33   1
(AC122611) Rattus norvegicus clone CH230-45H4, *** SEQUENCIN...    48   0.33   1
(AC106591) Rattus norvegicus clone CH230-212K18, *** SEQUENC...    48   0.33   1
(AC094250) Rattus norvegicus clone CH230-3E8, *** SEQUENCING...    48   0.33   1
(AC191916) Spermophilus tridecemlineatus clone VMRC20-378G1,...    48   0.33   1
(AC166212) Macropus eugenii clone ME_KBa-21M7, WORKING DRAFT...    48   0.33   1
(BH182179) 020_L_15-21 SmBAC1 Schistosoma mansoni genomic cl...    48   0.33   1
(EK193745) 1095460029689 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.33   1
(AL619129) T7 end of clone 020CF08 of library SmBAC1 from st...    48   0.33   1
(DR150374) 49229301 Drosophila pseudoobscura embryonic cDNA ...    48   0.33   1
(CU516022) Theobroma cacao, mRNA sequence (KZ0ABF9YG10FM1).        48   0.33   1
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    48   0.33   1
(AP010934) Clostridium botulinum plasmid pC2C203U28 DNA, com...    34   0.38   5
(AC219258) Bos taurus clone CH240-334H18, WORKING DRAFT SEQU...    36   0.43   5
(CU914570) Phaseolus vulgaris sequence from BAC clone pva1-4...    36   0.49   4
(EK440471) 1095522084422 Global-Ocean-Sampling_GS-31-01-01-1...    32   0.49   3
(EK440458) 1095522084409 Global-Ocean-Sampling_GS-31-01-01-1...    32   0.50   3
(DU841847) 33129 Tomato HindIII BAC Library Solanum lycopers...    44   0.59   2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   0.62   10
(AJ582677) Lactobacillus helveticus ORF1, ORF2 and uvrA gene...    44   0.69   2
(AJ925614) Theileria annulata EST, clone tam007a05_p1k.            38   0.70   2
(CU041361) S.lycopersicum DNA sequence from clone SL_MboI-96...    36   0.72   5
(CP000683) Rickettsia massiliae MTU5, complete genome.             38   0.73   13
(EF107102) Uncultured marine bacterium HF10_12C08 genomic se...    38   0.74   3
(ER967595) AF__Bc0010K01r AF__Bc Aquilegia formosa genomic, ...    36   0.81   2
(CT789266) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   0.90   2
(CT774217) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   0.90   2
(CT757894) Paramecium tetraurelia 5-PRIME EST from clone LK0...    36   0.90   2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    40   0.91   12
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   0.95   7
(AM455555) Vitis vinifera contig VV78X102930.6, whole genome...    36   0.96   3
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ...    36   1.0    11
(CU694549) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.0    8
(AC121125) Mus musculus chromosome 5, clone RP23-10F17, comp...    46   1.2    6
(CR450748) Zebrafish DNA sequence from clone CH211-157P5 Con...    46   1.3    1
(AC022368) Mus musculus strain C57BL6/J clone RP23-192D21, c...    46   1.3    1
(AC110782) Homo sapiens BAC clone RP11-389H18 from 2, comple...    46   1.3    1
(AC093113) Homo sapiens BAC clone RP11-789A18 from 2, comple...    46   1.3    1
(AC160329) Bos taurus clone CH240-37E23, WORKING DRAFT SEQUE...    46   1.3    1
(AC107433) Rattus norvegicus clone CH230-221G4, *** SEQUENCI...    46   1.3    1
(CT025727) D.miranda DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(AC216500) Muntiacus muntjak vaginalis clone CH244-447J6, WO...    46   1.3    1
(AC171979) Bos taurus clone CH240-301B22, WORKING DRAFT SEQU...    46   1.3    1
(AC166506) Bos taurus clone CH240-76C12, WORKING DRAFT SEQUE...    46   1.3    1
(FI195395) CccaBa020-H20TR CccABa Cajanus cajan genomic clon...    46   1.3    1
(ET108512) QM0AAC15DF08RM1 CCH3 Citrus clementina genomic cl...    46   1.3    1
(EJ310229) 1095390195344 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.3    1
(EJ216538) 1092351111982 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.3    1
(EJ142554) 1092343664687 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.3    1
(EC822485) SME00009764 esmbsro2 Sawyeria marylandensis cDNA,...    46   1.3    1
(AC215355) Solanum lycopersicum chromosome 2 clone C02HBa001...    34   1.3    4
(AM430243) Vitis vinifera contig VV78X168975.10, whole genom...    42   1.4    2
(Z71178) Caenorhabditis elegans Cosmid B0024.                      44   1.5    2
(CU761185) A BAC library has been constructed from PN40024 g...    38   1.6    2
(BZ393231) EINBG16TR EI_10_12_KB Entamoeba invadens genomic ...    32   1.8    3
(AM436044) Vitis vinifera contig VV78X143044.4, whole genome...    32   1.8    6
(EY369796) CAXA12552.rev CAXA Helobdella robusta Subtracted ...    34   1.8    2
(AC211046) Solanum lycopersicum chromosome 6 clone C06HBa011...    36   1.9    6
(EU275727) Dictyostelium fasciculatum strain SH3 mitochondri...    38   1.9    4
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    32   2.0    16
(EJ917676) 1093018575936 Global-Ocean-Sampling_GS-30-02-01-1...    42   2.0    2
(BX950229) Methanococcus maripaludis strain S2, complete seq...    34   2.2    2
(BX914217) Zebrafish DNA sequence from clone DKEY-175H14 in ...    36   2.4    5
(AC093579) Homo sapiens chromosome 1 clone RP11-78O9, comple...    34   2.6    2
(EJ908220) 1093018524044 Global-Ocean-Sampling_GS-30-02-01-1...    42   2.6    2
(AM424073) Vitis vinifera contig VV78X085836.11, whole genom...    36   2.6    3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    30   2.8    9
(AL355839) Human chromosome 14 DNA sequence BAC R-243J8 of l...    34   2.8    8
(CR936240) Zebrafish DNA sequence from clone DKEY-233K19 in ...    42   2.8    4
(CP000817) Lysinibacillus sphaericus C3-41, complete genome.       38   2.8    14
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    44   2.9    15
(CP001482) Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_lp...    34   3.3    4
(CP001502) Borrelia burgdorferi 94a plasmid 94a_lp28-3, comp...    34   3.4    4
(EJ487624) 1095403514838 Global-Ocean-Sampling_GS-28-01-01-1...    34   3.4    2
(EJ425071) 1093012262132 Global-Ocean-Sampling_GS-28-01-01-1...    32   3.4    2
(AC092511) Papio anubis clone RP41-444H21, WORKING DRAFT SEQ...    44   3.6    3
(CP001452) Borrelia burgdorferi WI91-23 plasmid WI91-23_lp28...    34   3.8    4
(AC138014) Medicago truncatula clone mth2-17p13, complete se...    34   3.8    4
(AC181115) Strongylocentrotus purpuratus clone R3-3043N23, W...    38   3.8    4
(AC183161) Bos taurus clone CH240-102P16, WORKING DRAFT SEQU...    38   4.0    4
(CP001203) Borrelia burgdorferi ZS7 plasmid ZS7_lp28-3, comp...    34   4.1    4
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    38   4.1    7
(AE000784) Borrelia burgdorferi B31 plasmid lp28-3, complete...    34   4.2    4
(CP001417) Borrelia burgdorferi 64b plasmid 64b_lp28-3, comp...    34   4.2    4
(AE017308) Mycoplasma mobile 163K complete genome.                 34   4.2    15
(CP001540) Borrelia burgdorferi 118a plasmid 118a_lp28-3, co...    34   4.2    4
(CP001256) Borrelia burgdorferi 156a plasmid 156a_lp28-3, co...    34   4.2    4
(CU929888) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.7    5
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   4.7    8
(AM449250) Vitis vinifera contig VV78X075372.5, whole genome...    34   5.0    3
(BX890575) Zebrafish DNA sequence from clone CH211-235C4 in ...    44   5.1    1
(BX323015) Zebrafish DNA sequence from clone CH211-231H23 in...    44   5.1    1
(AC105515) Rattus norvegicus 14 BAC CH230-13H11 (Children's ...    44   5.1    1
(AC094950) Rattus norvegicus 14 BAC CH230-6H12 (Children's H...    44   5.1    1
(AC171642) Rhesus Macaque  BAC CH250-405K12 (Children's Hosp...    44   5.1    1
(EA536702) Sequence 35327 from patent US 7361468.                  44   5.1    1
(CQ603002) Sequence 30760 from Patent WO0171042.                   44   5.1    1
(AY131844) Phacosoma punctatum cytochrome oxidase subunit I ...    44   5.1    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    44   5.1    1
(AC010715) Drosophila melanogaster 3L BAC RP98-9G21 (Roswell...    44   5.1    1
(AC004767) Drosophila melanogaster DNA sequence (P1s DS01986...    44   5.1    1
(AL365176) Human DNA sequence from clone RP11-420H23 on chro...    44   5.1    1
(AL031655) Human DNA sequence from clone RP1-134N8 on chromo...    44   5.1    1
(AC098594) Homo sapiens chromosome 4 clone RP11-465C6, compl...    44   5.1    1
(AC162505) Bos taurus clone CH240-114D6, WORKING DRAFT SEQUE...    44   5.1    1
(AC148134) Atelerix albiventris clone LB4-473L14, WORKING DR...    44   5.1    1
(AC148133) Atelerix albiventris clone LB4-410F7, WORKING DRA...    44   5.1    1
(AC148130) Carollia perspicillata clone 398L15, WORKING DRAF...    44   5.1    1
(AC110307) Rattus norvegicus clone CH230-341G17, *** SEQUENC...    44   5.1    1
(CU929106) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.1    1
(AC068882) Homo sapiens chromosome 4 clone RP11-465C6 map 4,...    44   5.1    1
(BX914208) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.1    1
(AC191475) Nomascus leucogenys leucogenys clone CH271-451I2,...    44   5.1    1
(AC189914) Nomascus leucogenys leucogenys clone CH271-452G16...    44   5.1    1
(AC189912) Nomascus leucogenys leucogenys clone CH271-438M16...    44   5.1    1
(AC180039) Strongylocentrotus purpuratus clone R3-23P3, WORK...    44   5.1    1
(AC014826) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   5.1    1
(BH147613) ENTPT64TF Entamoeba histolytica Sheared DNA Entam...    44   5.1    1
(BH131612) ENTNG18TR Entamoeba histolytica Sheared DNA Entam...    44   5.1    1
(AZ537980) ENTGA13TF Entamoeba histolytica Sheared DNA Entam...    44   5.1    1
(AZ533343) ENTCE44TF Entamoeba histolytica Sheared DNA Entam...    44   5.1    1
(AQ829966) HS_4828_B1_D05_T7A CIT Approved Human Genomic Spe...    44   5.1    1
(FI213479) CccaBa064-E15TR CccABa Cajanus cajan genomic clon...    44   5.1    1
(ER321766) 1092344183407 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.1    1
(ER315166) 1092344135569 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.1    1
(EK554409) 1095516151315 Global-Ocean-Sampling_GS-32-01-01-1...    44   5.1    1
(EK329317) 1095467017462 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.1    1
(EK308273) 1095462387996 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.1    1
(EJ343420) 1092963532036 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.1    1
(EJ081598) 1095460041138 Global-Ocean-Sampling_GS-26-01-01-1...    44   5.1    1
(ED020681) SBA015_K11.f Sugar beet BAC library USH20 (Code S...    44   5.1    1
(DE145333) Bombyx mori genomic DNA, Fosmid clone:RO0283-O10_R.     44   5.1    1
(CW939249) TcB19.3_C03_T7 Tribolium BAC library Tribolium ca...    44   5.1    1
(CL348085) RPCI44_273J20.r RPCI-44 Sus scrofa genomic clone ...    44   5.1    1
(CL348074) RPCI44_273H20.r RPCI-44 Sus scrofa genomic clone ...    44   5.1    1
(CL079125) CH216-155D19_Sp6.1 CH216 Xenopus (Silurana) tropi...    44   5.1    1
(EY917316) RR4D041JQ RR4(PB) Raphanus raphanistrum subsp. la...    44   5.1    1
(CP000517) Lactobacillus helveticus DPC 4571, complete genome.     44   5.1    1
(BA000011) Thermoplasma volcanium GSS1 DNA, complete genome.       44   5.1    1
(CP001547) Borrelia burgdorferi 29805 plasmid 29805_lp28-3, ...    34   5.1    4
(AF128396) Arabidopsis thaliana BAC T3H13.                         34   5.2    5
(AE017197) Rickettsia typhi str. Wilmington complete genome.       32   5.3    12
(BZ517451) BOMRQ57TR BO_2_3_KB Brassica oleracea genomic clo...    32   5.3    3
(CP001357) Brachyspira hyodysenteriae WA1, complete genome.        36   5.5    15
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   5.5    16
(AY863213) Smittium culisetae mitochondrion, complete genome.      32   5.6    5
(AL157858) Human chromosome 14 DNA sequence BAC R-187A6 of l...    38   5.6    2
(BX225859) Danio rerio genomic clone DKEY-273C13, genomic su...    34   5.6    2
(AL606470) Mouse DNA sequence from clone RP23-293J11 on chro...    40   6.0    2
(EJ985602) 1093023008093 Global-Ocean-Sampling_GS-30-02-01-1...    38   6.1    2
(FP102611) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   6.1    5
(AC103572) Rattus norvegicus clone CH230-40J1, *** SEQUENCIN...    36   6.2    3
(AC223487) Bos taurus clone CH240-468N12, WORKING DRAFT SEQU...    38   6.2    5
(AC180803) Strongylocentrotus purpuratus clone R3-3071H02, W...    38   6.3    4
(CP000932) Campylobacter lari RM2100, complete genome.             32   6.4    14
(AC108517) Homo sapiens BAC clone RP11-622J8 from 4, complet...    42   6.4    3
(AX641666) Sequence 2856 from Patent WO0101118.                    34   6.6    8
(EI722281) 2B421017K16TR BAC library from breast tumor sampl...    36   6.8    2
(AC007625) Genomic sequence of Homo sapiens clone 2314F2 fro...    34   6.9    6
(DC222868) Plasmodium berghei strain ANKA cDNA clone:MZ00654...    34   7.0    2
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       30   7.1    2
(AC174117) Strongylocentrotus purpuratus clone R3-30K10, WOR...    36   7.1    3
(DY223985) ID0AAI1YM18RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    40   7.2    2
(AC135890) Rattus norvegicus clone CH230-80L10, *** SEQUENCI...    36   7.3    4
(CP000049) Borrelia turicatae 91E135, complete genome.             32   7.4    11
(EK304177) 1095462374929 Global-Ocean-Sampling_GS-31-01-01-1...    36   7.4    2
(CV847922) ID0AEE4AF06RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    40   7.5    2
(EK569897) 1095521070500 Global-Ocean-Sampling_GS-32-01-01-1...    38   7.5    2
(EJ294186) 1095388016910 Global-Ocean-Sampling_GS-27-01-01-1...    40   7.5    2
(AC221793) Bos taurus clone CH240-385H13, WORKING DRAFT SEQU...    34   7.6    5
(FJ478174) Orussus occidentalis mitochondrion, complete genome.    34   7.6    3
(EJ179846) 1092344115712 Global-Ocean-Sampling_GS-27-01-01-1...    34   7.7    2
(EK585172) 1095522060024 Global-Ocean-Sampling_GS-32-01-01-1...    38   7.8    2
(AC187730) Pan troglodytes BAC clone CH251-379I18 from chrom...    34   7.9    3
(AM466400) Vitis vinifera, whole genome shotgun sequence, co...    38   8.1    4
(EK537348) 1095516037169 Global-Ocean-Sampling_GS-32-01-01-1...    40   8.1    2
(BX927100) Zebrafish DNA sequence from clone CH211-108G16 in...    42   8.3    2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    40   8.6    13
(AC090102) Homo sapiens chromosome 8 clone RP11-157D9 map 8,...    38   8.8    4
(AL591976) Listeria monocytogenes strain EGD, complete genom...    34   8.9    6
(EJ853995) 1093017908140 Global-Ocean-Sampling_GS-30-02-01-1...    38   9.1    2
(CP000048) Borrelia hermsii DAH, complete genome.                  32   9.1    12
(CT573194) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   9.1    2
(AC093625) Homo sapiens chromosome UL clone RP11-40F8, *** S...    32   9.2    2
(AC193074) Aotus nancymaae clone CH258-275F3, WORKING DRAFT ...    30   9.2    2
(BX293560) Human DNA sequence from clone RP11-40F8 on chromo...    32   9.3    2
(AC217848) Bos taurus clone CH240-184L18, WORKING DRAFT SEQU...    34   9.3    5
(AC046174) Homo sapiens chromosome 8, clone RP11-621B3, comp...    38   9.4    3
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-...    32   9.4    5
(AC210446) Oryza glaberrima clone OG_BBa0010J07, complete se...    36   9.5    4
(BX470170) Zebrafish DNA sequence from clone CH211-122C9 in ...    32   9.5    2

>(C91498) Dictyostelium discoideum slug cDNA, clone SSK353.
          Length = 494

 Score =  767 bits (387), Expect = 0.0
 Identities = 387/387 (100%)
 Strand = Plus / Plus


Query: 1   tagataatgaaagttcaattgagctatcaacaattttagaaacaaataaatcaattagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tagataatgaaagttcaattgagctatcaacaattttagaaacaaataaatcaattagat 60


Query: 61  ctttaaatttaacttgcacagtctttagaaatctaggttcactatttaatgctttaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttaaatttaacttgcacagtctttagaaatctaggttcactatttaatgctttaaagc 120


Query: 121 ttaataatactttattatatttaaatttatcaagaaattcaattaagttaaaagatatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaataatactttattatatttaaatttatcaagaaattcaattaagttaaaagatatta 180


Query: 181 ttgattttcaattcttacttgttaataattcattgatatctttaaaccgatcaaataatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgattttcaattcttacttgttaataattcattgatatctttaaaccgatcaaataatg 240


Query: 241 ctattgaaacaaatgaaatgcttcaattttttaaacacctctctaaaaatagatcaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctattgaaacaaatgaaatgcttcaattttttaaacacctctctaaaaatagatcaatta 300


Query: 301 aatatttagatatttcaaataatcctacaaatggtgatattagatttccaagttttaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatatttagatatttcaaataatcctacaaatggtgatattagatttccaagttttaaaa 360


Query: 361 gaagaaatcaaagattatctttggata 387
           |||||||||||||||||||||||||||
Sbjct: 361 gaagaaatcaaagattatctttggata 387

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 673,643,600
Number of extensions: 46356057
Number of successful extensions: 4140967
Number of sequences better than 10.0: 221
Length of query: 493
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 470
Effective length of database: 102,190,702,835
Effective search space: 48029630332450
Effective search space used: 48029630332450
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.20
Homology vs Protein 
Query= Contig-U05668-1 (Contig-U05668-1Q) /CSM_Contig/Contig-U05668-1Q.Seq.d
         (493 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q89A27) RecName: Full=Putative lysyl-tRNA synthetase;          ...    35   0.73
AM910995_453(AM910995|pid:none) Plasmodium knowlesi strain H chr...    33   4.7
CR940348_927(CR940348|pid:none) Theileria annulata strain Ankara...    32   6.2
AE009951_199(AE009951|pid:none) Fusobacterium nucleatum subsp. n...    32   8.1
(Q0SM64) RecName: Full=tRNA(Ile)-lysidine synthase;          EC=...    32   8.1
AE014185_364(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    32   8.1
CR522870_2564(CR522870|pid:none) Desulfotalea psychrophila LSv54...    32   8.1
AF083031_92(AF083031|pid:none) Guillardia theta nucleomorph chro...    32   8.1

>(Q89A27) RecName: Full=Putative lysyl-tRNA synthetase;
           EC=6.1.1.6; AltName: Full=Lysine--tRNA ligase;
           Short=LysRS; AltName: Full=GX;
           &AE016826_486(AE016826|pid:none)
          Length = 322

 Score = 35.4 bits (80), Expect = 0.73
 Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
 Frame = -1

Query: 337 SPFVGLFEISKYLIDLFLERCLKN*SISFVSIA-LFDRFKDINELLTSKN*KSIISFNLI 161
           SP+  +F+  K  ++ FL  CLK   + ++S    F ++ +I+ LL  K         L+
Sbjct: 116 SPYCNMFDFMKK-VEKFLVFCLKVVQVKYISYQRAFIKYLNIDPLLAKKR-------ELL 167

Query: 160 EFLDKFKYNKVLLSFKALNSEPRFLKTVQVK 68
           + ++KFK+N ++    ++++    L T++++
Sbjct: 168 DLINKFKFNHLISDCDSISTLLEILFTLKIE 198

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 422,863,424
Number of extensions: 5795145
Number of successful extensions: 14940
Number of sequences better than 10.0: 8
Number of HSP's gapped: 14931
Number of HSP's successfully gapped: 8
Length of query: 164
Length of database: 1,040,966,779
Length adjustment: 118
Effective length of query: 46
Effective length of database: 662,861,149
Effective search space: 30491612854
Effective search space used: 30491612854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U05668-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0