>Contig-U05658-1 (Contig-U05658-1Q) /CSM_Contig/Contig-U05658-1Q.Seq.d
ATAATAATAATAATAATAATAATAGTAATAATAATAATAAAAATAAAGAG
AAAGATTTTAATCTTGATAAAATCGACCAAGAAAAAGATAATGGTGATAA
ATCGAAAAGTAGTCAAGATAGTGAAGCTATTGATAACTCTCAAGAATATA
GAAATTATATGGCTGCAACTGAAGGTCTATTCCAGACCGAAATATCAAAA
GAGGATTTCATCAAATTATAATAAAATTATTATAATAAGAA

est1=SSK256Z,1,242

IIIIIIIIVIIIIKIKRKILILIKSTKKKIMVINRKVVKIVKLLITLKNIEIIWLQLKVY
SRPKYQKRISSNYNKIIIIR

Frame A:
IIIIIIIIVIIIIKIKRKILILIKSTKKKIMVINRKVVKIVKLLITLKNIEIIWLQLKVY
SRPKYQKRISSNYNKIIIIR


Frame B:
*************k*rerf*s**nrprkr*w**iek*sr**sy**lsri*klygcn*rsi
pdrnikrgfhqiiikll**e


Frame C:
nnnnnnnsnnnnknkekdfnldkidqekdngdkskssqdseaidnsqeyrnymaateglf
qteiskedfikl**nyynk

Query= Contig-U05658-1 (Contig-U05658-1Q)
/CSM_Contig/Contig-U05658-1Q.Seq.d
         (241 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05658-1 (Contig-U05658-1Q) /CSM_Contig/Conti...   387  e-108
Contig-U01760-1 (Contig-U01760-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U01945-1 (Contig-U01945-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U10475-1 (Contig-U10475-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U04919-1 (Contig-U04919-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U14190-1 (Contig-U14190-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U11818-1 (Contig-U11818-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U06291-1 (Contig-U06291-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U14846-1 (Contig-U14846-1Q) /CSM_Contig/Conti...    34  0.064
Contig-U14841-1 (Contig-U14841-1Q) /CSM_Contig/Conti...    34  0.064

>Contig-U05658-1 (Contig-U05658-1Q) /CSM_Contig/Contig-U05658-1Q.Seq.d
          Length = 241

 Score =  387 bits (195), Expect = e-108
 Identities = 195/195 (100%)
 Strand = Plus / Plus

                                                                       
Query: 47  agagaaagattttaatcttgataaaatcgaccaagaaaaagataatggtgataaatcgaa 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  agagaaagattttaatcttgataaaatcgaccaagaaaaagataatggtgataaatcgaa 106

                                                                       
Query: 107 aagtagtcaagatagtgaagctattgataactctcaagaatatagaaattatatggctgc 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 aagtagtcaagatagtgaagctattgataactctcaagaatatagaaattatatggctgc 166

                                                                       
Query: 167 aactgaaggtctattccagaccgaaatatcaaaagaggatttcatcaaattataataaaa 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aactgaaggtctattccagaccgaaatatcaaaagaggatttcatcaaattataataaaa 226

                          
Query: 227 ttattataataagaa 241
           |||||||||||||||
Sbjct: 227 ttattataataagaa 241


>Contig-U01760-1 (Contig-U01760-1Q) /CSM_Contig/Contig-U01760-1Q.Seq.d
          Length = 425

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 214 aattataataaaattattataataa 238
           |||||||||||||| ||||||||||
Sbjct: 106 aattataataaaataattataataa 130


>Contig-U01945-1 (Contig-U01945-1Q) /CSM_Contig/Contig-U01945-1Q.Seq.d
          Length = 302

 Score = 40.1 bits (20), Expect = 0.001
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 aattataataaaattattat 233
           ||||||||||||||||||||
Sbjct: 254 aattataataaaattattat 273


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4558
Number of Sequences: 6905
Number of extensions: 4558
Number of successful extensions: 1612
Number of sequences better than 10.0: 211
length of query: 241
length of database: 5,674,871
effective HSP length: 15
effective length of query: 226
effective length of database: 5,571,296
effective search space: 1259112896
effective search space used: 1259112896
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U05658-1 (Contig-U05658-1Q) /CSM_Contig/Contig-U05658-1Q.Seq.d
         (241 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91442) Dictyostelium discoideum slug cDNA, clone SSK256.        295   4e-76  1
(AC155977) Xenopus (Silurana) tropicalis clone CH216-60E17, ...    50   0.038  1
(EY363736) CAWZ8932.rev CAWZ Helobdella robusta Primary Late...    50   0.038  1
(EY350213) CAWZ17475.rev CAWZ Helobdella robusta Primary Lat...    50   0.038  1
(EU308509) Silene integripetala ribulose-1,5-bisphosphate ca...    48   0.15   1
(BX255965) Zebrafish DNA sequence from clone CH211-270C19.         36   0.34   2
(BX539343) Zebrafish DNA sequence from clone DKEY-58K6 in li...    46   0.60   1
(BX511264) Zebrafish DNA sequence from clone DKEY-31O6 in li...    46   0.60   1
(CU856334) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.60   1
(AZ684808) ENTKP71TR Entamoeba histolytica Sheared DNA Entam...    46   0.60   1
(AZ545823) ENTED88TF Entamoeba histolytica Sheared DNA Entam...    46   0.60   1
(AZ540780) ENTGH35TF Entamoeba histolytica Sheared DNA Entam...    46   0.60   1
(AZ536178) ENTBG54TF Entamoeba histolytica Sheared DNA Entam...    46   0.60   1
(ER391776) 1095328072536 Global-Ocean-Sampling_GS-34-01-01-1...    46   0.60   1
(AM641790) Entamoeba dispar GSS, clone dispar8e09.p1k.             46   0.60   1
(AM637496) Entamoeba dispar GSS, clone dispar45g12.p1k.            46   0.60   1
(DU887195) 394552 Tomato HindIII BAC Library Solanum lycoper...    46   0.60   1
(DH282750) Oryzias latipes Fosmid clone:GOLWFno622_k15, reve...    46   0.60   1
(AG359355) Mus musculus molossinus DNA, clone:MSMg01-159G16....    46   0.60   1
(FG613042) stem_S093_E12.SEQ Opium poppy stem cDNA library P...    46   0.60   1
(EX556515) AIAE-aab15b01.b1 Ancylostoma_caninum_EST_Female_p...    46   0.60   1
(ES817030) UFL_295_40 Cotton fiber 0-10 day post anthesis Go...    46   0.60   1
(AL116688) Botrytis cinerea strain T4 cDNA library.                36   1.6    2
(CU928063) Zebrafish DNA sequence from clone CH73-97E20 in l...    44   2.4    1
(CR388147) Zebrafish DNA sequence from clone DKEYP-72E1 in l...    44   2.4    1
(BX928740) Zebrafish DNA sequence from clone CH211-245J22 in...    44   2.4    1
(AC159638) Mus musculus BAC clone RP24-78C16 from chromosome...    44   2.4    1
(AC123957) Mus musculus BAC clone RP23-302N2 from 12, comple...    44   2.4    1
(AC122289) Mus musculus BAC clone RP23-254F12 from 3, comple...    44   2.4    1
(AC161283) Pan troglodytes BAC clone CH251-354N8 from chromo...    44   2.4    1
(EU308516) Silene schafta ribulose-1,5-bisphosphate carboxyl...    44   2.4    1
(AM473743) Vitis vinifera contig VV78X152254.2, whole genome...    44   2.4    1
(AM461959) Vitis vinifera contig VV78X175541.7, whole genome...    44   2.4    1
(AM446671) Vitis vinifera contig VV78X225545.7, whole genome...    44   2.4    1
(AM432847) Vitis vinifera contig VV78X271334.9, whole genome...    44   2.4    1
(EU009285) Aspisoma sp. KSHX47o 16S ribosomal RNA gene, part...    44   2.4    1
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                44   2.4    1
(AL445220) Human DNA sequence from clone RP11-317B3 on chrom...    44   2.4    1
(AC112621) Rattus norvegicus clone CH230-33L3, *** SEQUENCIN...    44   2.4    1
(AC106479) Rattus norvegicus clone CH230-169D6, WORKING DRAF...    44   2.4    1
(FP236802) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   2.4    1
(CU104722) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   2.4    1
(BH158495) ENTTQ59TR Entamoeba histolytica Sheared DNA Entam...    44   2.4    1
(AZ541411) ENTFG43TR Entamoeba histolytica Sheared DNA Entam...    44   2.4    1
(AZ191331) SP_1019_A2_B08_T7A Strongylocentrotus purpuratus,...    44   2.4    1
(AM607813) Entamoeba invadens IP1 GSS, clone inv083c11.p1k.        44   2.4    1
(EJ754959) 1092963068986 Global-Ocean-Sampling_GS-30-02-01-1...    44   2.4    1
(EJ738342) 1092961215740 Global-Ocean-Sampling_GS-30-02-01-1...    44   2.4    1
(AL217998) Tetraodon nigroviridis genome survey sequence T7 ...    44   2.4    1
(CR107587) Reverse strand read from insert in 5'HPRT inserti...    44   2.4    1
(BZ390919) EINDC08TF EI_10_12_KB Entamoeba invadens genomic ...    44   2.4    1
(BX179847) Danio rerio genomic clone DKEY-179H8, genomic sur...    44   2.4    1
(DV421066) NADY651TF Aedes aegypti infected with Dengue viru...    44   2.4    1
(DV410521) NADZG01TR Aedes aegypti infected with Dengue viru...    44   2.4    1
(DV318390) NABNX80TF Aedes aegypti infected with Brugia Mala...    44   2.4    1
(DV295779) NABML55TF Aedes aegypti infected with Brugia Mala...    44   2.4    1
(DV286265) NAAI621TR Aedes aegypti - Fat Bodies Normalized (...    44   2.4    1
(DV286264) NAAI621TF Aedes aegypti - Fat Bodies Normalized (...    44   2.4    1
(CP001466) Borrelia spielmanii A14S plasmid A14S_lp36, compl...    44   2.4    1
(X95275) Plasmodium falciparum complete gene map of plastid-...    34   3.1    3
(EU000309) Aphrocallistes vastus mitochondrion, complete gen...    32   5.1    2
(FP236426) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.9    2
(ED624933) GM_WBa0022C23.r GM_WBa Glycine max genomic clone ...    34   6.0    2
(GD265449) USDA-FP_197203 Asian citrus psyllid testes (Hemip...    34   6.0    2
(AM472831) Vitis vinifera contig VV78X249372.11, whole genom...    40   6.1    2
(ED691289) GM_WBb0028L06.r GM_WBb Glycine max genomic clone ...    34   6.1    2
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge...    38   6.2    2
(EJ751080) 1092963036622 Global-Ocean-Sampling_GS-30-02-01-1...    38   6.4    2
(AC235881) Glycine max strain Williams 82 clone GM_WBc0011H2...    38   6.5    5
(FM248993) Caenorhabditis elegans EST, clone  C08_ce4.trans....    30   6.7    3
(ER525594) 1093015634568 Global-Ocean-Sampling_GS-35-01-01-1...    40   6.9    2
(EJ750903) 1092963035470 Global-Ocean-Sampling_GS-30-02-01-1...    38   7.5    2
(V00701) Yeast mitochondrial HpaII-fragment 2.                     34   8.2    2
(CU856221) Zebrafish DNA sequence from clone CH1073-83M3 in ...    42   9.3    1
(CU467945) Zebrafish DNA sequence from clone CH73-138E9 in l...    42   9.3    1
(CU467642) Zebrafish DNA sequence from clone CH73-4C22 in li...    42   9.3    1
(CT573338) Zebrafish DNA sequence from clone DKEY-3A9 in lin...    42   9.3    1
(CR925709) Zebrafish DNA sequence from clone DKEY-21O19 in l...    42   9.3    1
(BX640518) Zebrafish DNA sequence from clone DKEY-278M12 in ...    42   9.3    1
(BX276119) Zebrafish DNA sequence from clone CH211-200N10 in...    42   9.3    1
(BX072561) Zebrafish DNA sequence from clone CH211-157C18 in...    42   9.3    1
(BX004781) Zebrafish DNA sequence from clone CH211-149G8 in ...    42   9.3    1
(AL929267) Zebrafish DNA sequence from clone CH211-2M15 in l...    42   9.3    1
(AL929216) Zebrafish DNA sequence from clone CH211-138G9 in ...    42   9.3    1
(AC149900) Xenopus (Silurana) tropicalis clone ISB-357K7, co...    42   9.3    1
(CT010567) Mouse DNA sequence from clone RP23-387D5 on chrom...    42   9.3    1
(AL731700) Mouse DNA sequence from clone RP23-239G1 on chrom...    42   9.3    1
(AC147641) Mus musculus BAC clone RP23-43L22 from 14, comple...    42   9.3    1
(AC132881) Mus musculus chromosome 14, clone RP24-246K16, co...    42   9.3    1
(AC127250) Mus musculus BAC clone RP24-482H23 from chromosom...    42   9.3    1
(AC112677) Mus musculus chromosome 3, clone RP23-176J23, com...    42   9.3    1
(FP017205) Medicago truncatula chromosome 5 clone mte1-4m19,...    42   9.3    1
(D82812) Populus kitakamiensis cyp73a gene for cinnamic acid...    42   9.3    1
(AM489361) Vitis vinifera contig VV78X102415.5, whole genome...    42   9.3    1
(AM483618) Vitis vinifera contig VV78X062662.6, whole genome...    42   9.3    1
(AM481260) Vitis vinifera contig VV78X161420.17, whole genom...    42   9.3    1
(AM478227) Vitis vinifera contig VV78X078878.5, whole genome...    42   9.3    1
(AM471157) Vitis vinifera contig VV78X211407.11, whole genom...    42   9.3    1
(AM471138) Vitis vinifera contig VV78X180937.14, whole genom...    42   9.3    1
(AM465612) Vitis vinifera, whole genome shotgun sequence, co...    42   9.3    1
(AM458438) Vitis vinifera contig VV78X022290.27, whole genom...    42   9.3    1
(AM458089) Vitis vinifera contig VV78X011311.6, whole genome...    42   9.3    1
(AM454416) Vitis vinifera contig VV78X047858.5, whole genome...    42   9.3    1
(AM449705) Vitis vinifera, whole genome shotgun sequence, co...    42   9.3    1
(AM442883) Vitis vinifera contig VV78X056828.8, whole genome...    42   9.3    1
(AM429944) Vitis vinifera contig VV78X156953.4, whole genome...    42   9.3    1
(AC182714) Populus trichocarpa clone Pop1-86K15, complete se...    42   9.3    1
(AC051629) Arabidopsis thaliana chromosome I BAC F6I1 genomi...    42   9.3    1
(AC007651) Arabidopsis thaliana chromosome I BAC F20D23 geno...    42   9.3    1
(BD430793) GENOME SEQUENCE AND POLYPEPTIDES OF PYROCOCCUS AB...    42   9.3    1
(AX347010) Sequence 2081 from Patent WO0200928.                    42   9.3    1
(AX041918) Sequence 813 from Patent WO0065062.                     42   9.3    1
(Z82064) Caenorhabditis elegans Cosmid W02B9.                      42   9.3    1
(AC156313) Bos taurus clone CH240-48D15, WORKING DRAFT SEQUE...    42   9.3    1
(AC134544) Mus musculus chromosome UNK clone RP24-456G13, WO...    42   9.3    1
(AC128161) Rattus norvegicus clone CH230-58G18, *** SEQUENCI...    42   9.3    1
(AC118398) Rattus norvegicus clone CH230-117P20, *** SEQUENC...    42   9.3    1
(AC096068) Rattus norvegicus clone CH230-20F15, *** SEQUENCI...    42   9.3    1
(FP017204) Medicago truncatula chromosome 5 clone mth2-79h2,...    42   9.3    1
(CU695002) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   9.3    1
(CT961048) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   9.3    1
(CT573307) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   9.3    1
(CR940352) Theileria annulata genomic DNA chromosome 3.            42   9.3    1
(CR456630) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   9.3    1
(AC233160) Medicago truncatula clone mth2-28d24, WORKING DRA...    42   9.3    1
(AC204168) Xenopus (Silurana) tropicalis clone ISB1-98B5, WO...    42   9.3    1
(AC185814) Bos taurus clone RP42-191L5, WORKING DRAFT SEQUEN...    42   9.3    1
(AC180836) Strongylocentrotus purpuratus clone R3-3069K9, WO...    42   9.3    1
(AC178255) Strongylocentrotus purpuratus clone R3-3086O12, W...    42   9.3    1
(AC169307) Bos taurus clone CH240-258M1, WORKING DRAFT SEQUE...    42   9.3    1
(AC167883) Bos taurus clone CH240-193I2, WORKING DRAFT SEQUE...    42   9.3    1
(FH899353) CHO_ONF064xf20f1.ab1 CHO_ONF Nicotiana tabacum ge...    42   9.3    1
(FH327046) CHO_OF4561xd21f1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   9.3    1
(ER505764) 1093015421280 Global-Ocean-Sampling_GS-35-01-01-1...    42   9.3    1
(EJ788185) 1093017363228 Global-Ocean-Sampling_GS-30-02-01-1...    42   9.3    1
(AM616862) Entamoeba invadens IP1 GSS, clone inv085h08.q1k.        42   9.3    1
(AM611388) Entamoeba invadens IP1 GSS, clone inv006d08.q1k.        42   9.3    1
(AM608595) Entamoeba invadens IP1 GSS, clone inv090e08.p1k.        42   9.3    1
(AM608240) Entamoeba invadens IP1 GSS, clone inv087b08.q1k.        42   9.3    1
(EJ279827) 1095366046187 Global-Ocean-Sampling_GS-27-01-01-1...    42   9.3    1
(EI178154) MUGQ_CH252P183K08Sp6_CN260_022 CHORI-252 Vervet M...    42   9.3    1
(ED681363) GM_WBb0014I16.f GM_WBb Glycine max genomic clone ...    42   9.3    1
(ED629794) GM_WBa0029N19.r GM_WBa Glycine max genomic clone ...    42   9.3    1
(ED629749) GM_WBa0029M19.r GM_WBa Glycine max genomic clone ...    42   9.3    1
(ED629620) GM_WBa0029J18.r GM_WBa Glycine max genomic clone ...    42   9.3    1
(DX547324) GH_MBb0052P10f GH_MBb Gossypium hirsutum genomic ...    42   9.3    1
(DX431506) BE1030_B01_F IASMA L1 HindIII BAC library Vitis v...    42   9.3    1
(DH802542) Rattus norvegicus DNA, BAC clone: RNB1-398J11, 3'...    42   9.3    1
(DE446202) Bombyx mori genomic DNA, Fosmid clone:GBMFno36_o1...    42   9.3    1
(DE395622) Bombyx mori genomic DNA, BAC clone:17D5D.               42   9.3    1
(DE348843) Bombyx mori genomic DNA, BAC clone:BET_058_P22.         42   9.3    1
(CZ896263) gx84g06.x1.b.screen Pine methylation unfiltered l...    42   9.3    1
(CW947828) TcB31.1_H09_SP6 Tribolium BAC library Tribolium c...    42   9.3    1
(CU751968) A BAC library has been constructed from PN40024 g...    42   9.3    1
(CR238147) Reverse strand read from insert in 5'HPRT inserti...    42   9.3    1
(CR237822) Reverse strand read from insert in 5'HPRT inserti...    42   9.3    1
(CR155754) Reverse strand read from insert in 5'HPRT inserti...    42   9.3    1
(CR127946) Reverse strand read from insert in 5'HPRT inserti...    42   9.3    1
(CR066052) Reverse strand read from insert in 5'HPRT inserti...    42   9.3    1
(CL095020) ISB1-25O22_T7.1 ISB1 Xenopus (Silurana) tropicali...    42   9.3    1
(CG967510) MBEGH71TR mth2 Medicago truncatula genomic clone ...    42   9.3    1
(CG812941) SOYEV90TV LargeInsertSoybeanGenLib Glycine max ge...    42   9.3    1
(CE429406) tigr-gss-dog-17000362924987 Dog Library Canis lup...    42   9.3    1
(CE405431) tigr-gss-dog-17000335358063 Dog Library Canis lup...    42   9.3    1
(CC538341) CH240_418E17.TARBAC13P2 CHORI-240 Bos taurus geno...    42   9.3    1
(BZ400653) EINCQ06TF EI_10_12_KB Entamoeba invadens genomic ...    42   9.3    1
(BX221296) Danio rerio genomic clone DKEY-242K6, genomic sur...    42   9.3    1
(BX171626) Danio rerio genomic clone DKEY-174M17, genomic su...    42   9.3    1
(BX159887) Danio rerio genomic clone DKEY-121H8, genomic sur...    42   9.3    1
(BX156657) Danio rerio genomic clone DKEY-152J3, genomic sur...    42   9.3    1
(BX155970) Danio rerio genomic clone DKEY-123P14, genomic su...    42   9.3    1
(BH922573) odh83h03.g1 B.oleracea002 Brassica oleracea genom...    42   9.3    1
(AG121007) Pan troglodytes DNA, clone: PTB-129O20.F.               42   9.3    1
(DN585626) 92296119 Sea Urchin primary mesenchyme cell cDNA ...    42   9.3    1
(AU073359) Dictyostelium discoideum slug cDNA, clone SSG774.       42   9.3    1
(CO868922) Ep_CT_04B04_SKPL Eurydice pulchra CT library Eury...    42   9.3    1
(CK521831) rswea0_006816.y1 swe Bombyx mori cDNA, mRNA seque...    42   9.3    1
(CK423792) AUF_IpSpn_69_g06 Spleen cDNA library Ictalurus pu...    42   9.3    1
(CJ457233) Macaca fascicularis mRNA, clone: QflA-23108, 5' e...    42   9.3    1
(BX696203) Xenopus tropicalis EST, clone TNeu086d10 3'.            42   9.3    1
(BW997976) Bombyx mori mRNA, clone:ES2878, expressed in fert...    42   9.3    1
(BQ545139) EST628766 TpMugugaSh01 Theileria parva cDNA clone...    42   9.3    1
(BP179517) Bombyx mori cDNA, clone: ovS303F11f, 5' end seque...    42   9.3    1
(BP118372) Bombyx mori cDNA, clone:ce--1804, 5' end sequence.      42   9.3    1
(BM649537) 17000687369041 A.Gam.ad.cDNA1 Anopheles gambiae c...    42   9.3    1
(BG439997) GA__Ea0005I13f Gossypium arboreum 7-10 dpa fiber ...    42   9.3    1
(BB991245) Bombyx mori cDNA, clone:E_ET_MSV3_10D04_R_0, 3' e...    42   9.3    1
(BB985929) Bombyx mori cDNA, clone:E_ET_MSV3_11F01_F_0, 5' e...    42   9.3    1
(FF335008) 280458407 Pea aphid whole body normalized full le...    42   9.3    1
(FF304307) 279359743 Pea aphid whole body normalized full le...    42   9.3    1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    42   9.3    1
(AJ248284) Pyrococcus abyssi complete genome; segment 2/6.         42   9.3    1
(AF211124) Carsonella ruddii country USA tryptophanyl-tRNA s...    42   9.3    1
(V00705) Yeast mitochondrial var1 gene (allele 40.0) a ribos...    34   9.5    2
(X75545) P.falciparum gene for tRNA I,A,N,L,R,V,R,M,T.             34   9.6    2

>(C91442) Dictyostelium discoideum slug cDNA, clone SSK256.
          Length = 242

 Score =  295 bits (149), Expect = 4e-76
 Identities = 149/149 (100%)
 Strand = Plus / Plus


Query: 93  ggtgataaatcgaaaagtagtcaagatagtgaagctattgataactctcaagaatataga 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ggtgataaatcgaaaagtagtcaagatagtgaagctattgataactctcaagaatataga 152


Query: 153 aattatatggctgcaactgaaggtctattccagaccgaaatatcaaaagaggatttcatc 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aattatatggctgcaactgaaggtctattccagaccgaaatatcaaaagaggatttcatc 212


Query: 213 aaattataataaaattattataataagaa 241
           |||||||||||||||||||||||||||||
Sbjct: 213 aaattataataaaattattataataagaa 241

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 203,321,308
Number of extensions: 13314927
Number of successful extensions: 4017433
Number of sequences better than 10.0: 197
Length of query: 241
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 218
Effective length of database: 102,190,702,835
Effective search space: 22277573218030
Effective search space used: 22277573218030
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U05658-1 (Contig-U05658-1Q) /CSM_Contig/Contig-U05658-1Q.Seq.d
         (241 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU928168_462(CU928168|pid:none) Kluyveromyces thermotolerans str...    32   6.8

>CU928168_462(CU928168|pid:none) Kluyveromyces thermotolerans strain
           CBS6340 chromosome D complete sequence.
          Length = 445

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +3

Query: 48  EKDFNLDKIDQEKDNGDKSKSSQDSEAIDNSQEYRNYMAATEGLFQTEISKEDFIK 215
           EKD +  K  ++K N   S+SS  S+A+D            +G+   +IS++D IK
Sbjct: 91  EKDKSSSKKQKQKKNTPASRSSSHSDAVDGEDVMDLDNLNVQGIKDEDISRDDEIK 146

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 248,027,971
Number of extensions: 3713293
Number of successful extensions: 15807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15780
Number of HSP's successfully gapped: 1
Length of query: 80
Length of database: 1,040,966,779
Length adjustment: 51
Effective length of query: 29
Effective length of database: 877,548,244
Effective search space: 25448899076
Effective search space used: 25448899076
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

 psg: 1.01  gvh: 0.39  alm: 0.14  top: 0.93  tms: 0.07  mit: 0.35  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U05658-1 is nuc