>Contig-U05654-1 (Contig-U05654-1Q) /CSM_Contig/Contig-U05654-1Q.Seq.d
GTTTATTTTAAAGTTGACTTTTAACGAATTCCTAAATCTTTAATAAATAT
AACTATATATAGTAAACAGATAGCAGAATAGATAATGTCAACATTTACAT
TTTTAATTATTGGAAAAAATGATAATCCATTATATGAAATCGAATTCCCA
ATCACTGTACAAAAGAAAGAAACCTATGTTCTTCAATATATAGCACATGG
TTCTTTAGATATAGTTGAAGAACATGTTTGGAAATCAAATAATATGTATT
TAAAGATAATTGACAAATTTAATAAAGTTCAAATTTCTTCTTTTGTTACT
GCTGGTCATATAAAATTTTTGTTACTCCATGAAAAAAAAGATGAAGATGC
AATTAAAAACTTTTTTGTTGAAGTACACGATCTTTATTTAAAAATACTAT
TAAACCCATTTTATGAATATAATAAACCTATAACATCAACAGCATTTGAT
GCAAAGGTTAGAAAAATTGGAACAAAATACTTTTAATTTTTAATGTAAAA
TAAATAAATAAAAAAATAAAAAAAAAAAGACAATAAATAAATTAATATCA
ATTGTGTATATATATATAAAAAAGAATAAAACAATTATAATTTATTT

est1=VSB584E,1,540
est2=VSF405E,5,534
est3=SSK237F,36,589
est4=VSF739F,136,532
est5=VSF739Z,380,598

vyfkvdf*ripkslinitiyskqiae*IMSTFTFLIIGKNDNPLYEIEFPITVQKKETYV
LQYIAHGSLDIVEEHVWKSNNMYLKIIDKFNKVQISSFVTAGHIKFLLLHEKKDEDAIKN
FFVEVHDLYLKILLNPFYEYNKPITSTAFDAKVRKIGTKYF*flm*nk*ikk*kkkdnk*
inincvyiykke*nnynlf

Frame A:
vyfkvdf*ripkslinitiyskqiae*IMSTFTFLIIGKNDNPLYEIEFPITVQKKETYV
LQYIAHGSLDIVEEHVWKSNNMYLKIIDKFNKVQISSFVTAGHIKFLLLHEKKDEDAIKN
FFVEVHDLYLKILLNPFYEYNKPITSTAFDAKVRKIGTKYF*flm*nk*ikk*kkkdnk*
inincvyiykke*nnynlf


Frame B:
filkltfneflnl**i*lyivnr*qnr*cqhlhf*llekmiihymksnsqslykrkkpmf
fni*hmvl*i*lknmfgnqiici*r*ltnlikfkfllllllvi*nfcysmkkkmkmqlkt
fllkytifi*kyy*thfmniinl*hqqhlmqrlekleqntfnf*ckink*knkkkktink
lisivyiyikknktiiiy


Frame C:
lf*s*lltns*ifnkynyi**tdsridnvniyifnywkk**sii*nripnhctkernlcs
siystwffrys*rtcleik*yvfkdn*qi**ssnfffcycwsykifvtp*kkr*rcn*kl
fc*strslfkntikpil*i**tyninsi*ckg*knwnkillifnvk*inkkikkkrq*in
*yqlciyi*krikql*fi

Query= Contig-U05654-1 (Contig-U05654-1Q)
/CSM_Contig/Contig-U05654-1Q.Seq.d
         (597 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05654-1 (Contig-U05654-1Q) /CSM_Contig/Conti...   934  0.0
Contig-U06489-1 (Contig-U06489-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U06930-1 (Contig-U06930-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U05934-1 (Contig-U05934-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U02999-1 (Contig-U02999-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U12590-1 (Contig-U12590-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U11213-1 (Contig-U11213-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U10460-1 (Contig-U10460-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U09964-1 (Contig-U09964-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U06805-1 (Contig-U06805-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U05654-1 (Contig-U05654-1Q) /CSM_Contig/Contig-U05654-1Q.Seq.d
          Length = 597

 Score =  934 bits (471), Expect = 0.0
 Identities = 487/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttattttaaagttgacttttaacgaattcctaaatctttaataaatataactatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtttattttaaagttgacttttaacgaattcctaaatctttaataaatataactatatat 60

                                                                       
Query: 61  agtaaacagatagcagaatagataatgtcaacatttacatttttaattattggaaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtaaacagatagcagaatagataatgtcaacatttacatttttaattattggaaaaaat 120

                                                                       
Query: 121 gataatccattatatgaaatcgaattcccaatcactgtacaaaagaaagaaacctatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gataatccattatatgaaatcgaattcccaatcactgtacaaaagaaagaaacctatgtt 180

                                                                       
Query: 181 cttcaatatatagcacatggttctttagatatagttgaagaacatgtttggaaatcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttcaatatatagcacatggttctttagatatagttgaagaacatgtttggaaatcaaat 240

                                                                       
Query: 241 aatatgtatttaaagataattgacaaatttaataaagttcaaatttcttcttttgttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatatgtatttaaagataattgacaaatttaataaagttcaaatttcttcttttgttact 300

                                                                       
Query: 301 gctggtcatataaaatttttgttactccatgnnnnnnnngatgaagatgcaattaaaaac 360
           |||||||||||||||||||||||||||||||        |||||||||||||||||||||
Sbjct: 301 gctggtcatataaaatttttgttactccatgaaaaaaaagatgaagatgcaattaaaaac 360

                                                                       
Query: 361 ttttttgttgaagtacacgatctttatttaaaaatactattaaacccattttatgaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttttgttgaagtacacgatctttatttaaaaatactattaaacccattttatgaatat 420

                                                                       
Query: 421 aataaacctataacatcaacagcatttgatgcaaaggttagaaaaattggaacaaaatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aataaacctataacatcaacagcatttgatgcaaaggttagaaaaattggaacaaaatac 480

                          
Query: 481 ttttaatttttaatg 495
           |||||||||||||||
Sbjct: 481 ttttaatttttaatg 495


>Contig-U06489-1 (Contig-U06489-1Q) /CSM_Contig/Contig-U06489-1Q.Seq.d
          Length = 610

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 100 tttttaattattggaaaaa 118
           |||||||||||||||||||
Sbjct: 184 tttttaattattggaaaaa 202


>Contig-U06930-1 (Contig-U06930-1Q) /CSM_Contig/Contig-U06930-1Q.Seq.d
          Length = 597

 Score = 36.2 bits (18), Expect = 0.042
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 342 tgaagatgcaattaaaaa 359
           ||||||||||||||||||
Sbjct: 102 tgaagatgcaattaaaaa 119


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,593
Number of Sequences: 6905
Number of extensions: 12593
Number of successful extensions: 1344
Number of sequences better than 10.0: 120
length of query: 597
length of database: 5,674,871
effective HSP length: 16
effective length of query: 581
effective length of database: 5,564,391
effective search space: 3232911171
effective search space used: 3232911171
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U05654-1 (Contig-U05654-1Q) /CSM_Contig/Contig-U05654-1Q.Seq.d
         (597 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262113) Dictyostelium discoideum vegetative cDNA clone:VS...   656   0.0    2
(AU265182) Dictyostelium discoideum vegetative cDNA clone:VS...   648   0.0    2
(AU265710) Dictyostelium discoideum vegetative cDNA clone:VS...   389   e-170  2
(AU074285) Dictyostelium discoideum slug cDNA, clone SSK237.      476   e-130  1
(AU265183) Dictyostelium discoideum vegetative cDNA clone:VS...   278   e-113  2
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 36   4e-04  14
(AC128037) Rattus norvegicus clone CH230-480P10, *** SEQUENC...    38   0.003  6
(AC190080) Nomascus leucogenys leucogenys clone CH271-35A19,...    48   0.004  4
(AC157805) Mus musculus chromosome 1, clone RP24-324B17, com...    50   0.024  5
(DH435592) Macropus eugenii DNA with T7 primer, fosmid clone...    52   0.025  1
(CU372906) Mouse DNA sequence from clone DN-226F16 on chromo...    50   0.10   1
(AC164005) Mus musculus chromosome 1, clone RP24-312J21, com...    50   0.10   1
(AC107673) Mus musculus chromosome 1, clone RP24-263O21, com...    50   0.10   1
(AC140044) Mus musculus chromosome 1 clone RP24-129P5 map 1,...    50   0.10   1
(AC135550) Pan troglodytes clone RP43-65H8, WORKING DRAFT SE...    40   0.12   2
(AC217191) Pan troglodytes BAC clone CH251-346N8 from chromo...    40   0.14   3
(EK233704) 1095460191169 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.21   2
(AC159651) Pan troglodytes BAC clone CH251-495E21 from chrom...    40   0.28   5
(FG284659) 1108770679965 New World Screwworm Egg 9261 ESTs C...    38   0.29   2
(FG301193) 1108799272607 New World Screwworm Larvae 9387 EST...    38   0.29   2
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   0.32   10
(AC199862) Pongo abelii BAC clone CH276-72L10 from chromosom...    48   0.40   1
(AC188862) Phakopsora pachyrhizi, complete sequence.               48   0.40   1
(HA623772) Sequence 6439 from Patent WO2005087953.                 48   0.40   1
(HA618939) Sequence 1606 from Patent WO2005087953.                 48   0.40   1
(FJ262211) Natalina wesseliana isolate V7980 16S ribosomal R...    48   0.40   1
(EU368948) Homo sapiens glutamate receptor, metabotropic 8 (...    48   0.40   1
(AC002497) Human Cosmid g1940a142 from 7q31.3, complete sequ...    48   0.40   1
(AC230266) Bos taurus clone CH240-514G9, WORKING DRAFT SEQUE...    48   0.40   1
(AC224860) Bos taurus clone CH240-473O8, WORKING DRAFT SEQUE...    48   0.40   1
(AC192671) Chlorocebus aethiops clone CH252-361G14, WORKING ...    48   0.40   1
(AC192023) Chlorocebus aethiops clone CH252-251O15, WORKING ...    48   0.40   1
(AC190008) Nomascus leucogenys leucogenys clone CH271-328I13...    48   0.40   1
(AC169834) Macaca mulatta clone CH250-141J19, WORKING DRAFT ...    48   0.40   1
(CP000790) Vibrio harveyi ATCC BAA-1116 chromosome II, compl...    48   0.40   1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    40   0.42   15
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   0.53   19
(AC159464) Pan troglodytes BAC clone CH251-505P8 from chromo...    40   0.58   4
(AJ850607) Stictotarsus roffi mitochondrial partial COI gene...    38   0.69   2
(AC021856) Homo sapiens BAC clone RP11-553E5 from 4, complet...    36   0.83   2
(AC127588) Mus musculus BAC clone RP23-106G21 from chromosom...    36   0.84   2
(AC068088) Homo sapiens chromosome 4 clone RP11-565E18 map 4...    36   0.85   2
(DU884305) 397853 Tomato HindIII BAC Library Solanum lycoper...    36   0.87   2
(EU168191) Heterosigma akashiwo strain CCMP 452 chloroplast,...    38   1.0    5
(EY297576) CAWX13439.fwd CAWX Helobdella robusta Primary Ear...    34   1.1    2
(EY296751) CAWX12986.fwd CAWX Helobdella robusta Primary Ear...    34   1.1    2
(EY306909) CAWX20174.fwd CAWX Helobdella robusta Primary Ear...    34   1.1    2
(EY348899) CAWZ16740.fwd CAWZ Helobdella robusta Primary Lat...    34   1.1    2
(EY305115) CAWX19176.fwd CAWX Helobdella robusta Primary Ear...    34   1.1    2
(EY294911) CAWX11955.fwd CAWX Helobdella robusta Primary Ear...    34   1.1    2
(CZ453675) MCF735H20TR Human MCF7 breast cancer cell line li...    36   1.1    2
(AQ146099) HS_2224_A2_G01_MR CIT Approved Human Genomic Sper...    36   1.1    2
(AX344559) Sequence 10 from Patent WO0200932.                      36   1.1    9
(AC053527) Homo sapiens BAC clone RP11-692D12 from 4, comple...    36   1.2    4
(AL732598) Zebrafish DNA sequence from clone CH211-10E8 in l...    34   1.2    4
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    36   1.3    8
(BD453024) Diagnosis of Diseases Associated with tumor suppr...    40   1.4    3
(AX344502) Sequence 349 from Patent WO0200926.                     40   1.4    3
(AX251503) Sequence 471 from Patent WO0168912.                     40   1.4    3
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete...    40   1.5    15
(FD395430) 1106162311571 Cryptosporidium muris (strain RN66)...    32   1.5    3
(AC160779) Bos taurus clone CH240-96L9, WORKING DRAFT SEQUEN...    46   1.6    1
(AC151686) Gallus gallus clone WAG-45I4, WORKING DRAFT SEQUE...    46   1.6    1
(AC116936) Papio anubis clone RP41-432E16, WORKING DRAFT SEQ...    46   1.6    1
(FP236275) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.6    1
(AC183254) Bos taurus clone CH240-97D22, WORKING DRAFT SEQUE...    46   1.6    1
(CT423793) Sus scrofa genomic clone CH242-354D18, genomic su...    46   1.6    1
(CT195306) Sus scrofa genomic clone CH242-161O7, genomic sur...    46   1.6    1
(FD411299) 1106514814328 Cryptosporidium muris (strain RN66)...    32   1.6    3
(FD409774) 1106514762897 Cryptosporidium muris (strain RN66)...    32   1.6    3
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   1.8    9
(AC189124) Pan troglodytes BAC clone CH251-265J23 from chrom...    38   2.0    6
(AC113039) Mus musculus chromosome 1, clone RP23-229P20, com...    40   2.1    2
(CU466301) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.1    5
(AL844507) Plasmodium falciparum 3D7 chromosome 8.                 36   2.2    16
(AG390627) Mus musculus molossinus DNA, clone:MSMg01-207G02....    34   2.3    3
(CS374675) Sequence 778 from Patent WO2006034879.                  38   2.4    3
(CS374403) Sequence 506 from Patent WO2006034879.                  38   2.4    3
(AM458920) Vitis vinifera contig VV78X213452.6, whole genome...    36   2.8    2
(FH722576) CHO_OF5072xg17r1.ab1 CHO_OF5 Nicotiana tabacum ge...    38   2.8    2
(CC147812) ZMMBBb0011F21.f ZMMBBb Zea mays subsp. mays genom...    40   3.0    2
(DU088316) 35891 Tomato HindIII BAC Library Solanum lycopers...    38   3.0    2
(FH462356) CHO_OF4946xe09r1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   3.3    2
(AC235043) Glycine max strain Williams 82 clone GM_WBb0005D2...    42   3.4    5
(AF159056) Homo sapiens T-cell gamma receptor locus, complet...    36   3.6    4
(BD460621) Diagnosis of Diseases Associated with Cell Cycle.       38   3.6    3
(BD452543) Diagnosis of Diseases Associated with Cell Cycle.       38   3.6    3
(AX348930) Sequence 388 from Patent WO0202807.                     38   3.6    3
(AX347133) Sequence 2204 from Patent WO0200928.                    38   3.6    3
(AX344523) Sequence 370 from Patent WO0200926.                     38   3.6    3
(AX252157) Sequence 418 from Patent WO0168911.                     38   3.6    3
(AC196938) Pan troglodytes BAC clone CH251-620H13 from chrom...    34   3.6    6
(AC113617) Homo sapiens BAC clone RP11-610B19 from 4, comple...    36   4.3    4
(CU694742) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.7    5
(AC216911) Populus trichocarpa clone POP011-K24, complete se...    36   4.8    3
(BX072556) Zebrafish DNA sequence from clone DKEY-29F19 in l...    34   5.1    4
(AC164050) Bos taurus clone CH240-149K7, *** SEQUENCING IN P...    36   5.3    4
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    34   5.3    16
(AX348960) Sequence 418 from Patent WO0202807.                     40   5.3    3
(AX344209) Sequence 56 from Patent WO0200926.                      40   5.3    3
(CU466490) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   5.5    7
(AX458557) Sequence 103 from Patent WO0246454.                     40   5.9    3
(AC159944) Loxodonta africana clone VMRC15-410A9, WORKING DR...    40   6.1    2
(CR533579) Zebrafish DNA sequence from clone CH211-232J20 in...    44   6.2    1
(BX004984) Zebrafish DNA sequence from clone DKEY-3N4.             44   6.2    1
(AL953891) Zebrafish DNA sequence from clone DKEY-28P22.           44   6.2    1
(AC190401) Pan troglodytes chromosome X clone CH251-254K15 m...    44   6.2    1
(AC188381) Pan troglodytes chromosome X clone RP43-32N7 map ...    44   6.2    1
(AC187131) Callithrix jacchus chromosome UNK clone CH259-90H...    44   6.2    1
(AC146278) Pan troglodytes BAC clone CH251-26J9 from X, comp...    44   6.2    1
(AM483904) Vitis vinifera contig VV78X230042.2, whole genome...    44   6.2    1
(AL139037) Human DNA sequence from clone RP11-400M8 on chrom...    44   6.2    1
(AC148718) Medicago truncatula clone mth2-39k21, WORKING DRA...    44   6.2    1
(AC123896) Rattus norvegicus clone CH230-5L2, *** SEQUENCING...    44   6.2    1
(FP017282) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.2    1
(CU972471) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(CU928321) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(CU694899) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(CU640440) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(AC224554) Bos taurus clone CH240-482I23, WORKING DRAFT SEQU...    44   6.2    1
(AC224219) Bos taurus clone CH240-446K14, WORKING DRAFT SEQU...    44   6.2    1
(AC223006) Bos taurus clone CH240-432K13, WORKING DRAFT SEQU...    44   6.2    1
(AC213183) Chlorocebus aethiops clone CH252-502M22, WORKING ...    44   6.2    1
(AC193294) Colobus guereza clone CH272-91O13, WORKING DRAFT ...    44   6.2    1
(AC189885) Macaca mulatta clone CH250-1J22, WORKING DRAFT SE...    44   6.2    1
(AC175272) Bos taurus clone CH240-438E23, WORKING DRAFT SEQU...    44   6.2    1
(AC169821) Macaca mulatta clone CH250-77C14, WORKING DRAFT S...    44   6.2    1
(FH151177) CHO_OF3061xm13f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   6.2    1
(ER630107) 1093018416390 Global-Ocean-Sampling_GS-36-01-01-2...    44   6.2    1
(ER371213) 1093025030497 Global-Ocean-Sampling_GS-34-01-01-1...    44   6.2    1
(EK126697) 1092986900751 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.2    1
(DU083445) 278788 Tomato HindIII BAC Library Solanum lycoper...    44   6.2    1
(DU083442) 278785 Tomato HindIII BAC Library Solanum lycoper...    44   6.2    1
(DU083438) 278781 Tomato HindIII BAC Library Solanum lycoper...    44   6.2    1
(CT073699) Sus scrofa genomic clone PigE-110M23, genomic sur...    44   6.2    1
(CR822155) GR0AAA51DD01FM1 INRA BAC Bos taurus genomic clone...    44   6.2    1
(BX238160) Danio rerio genomic clone DKEY-288O17, genomic su...    44   6.2    1
(BX131508) Danio rerio genomic clone DKEY-91K10, genomic sur...    44   6.2    1
(EL922714) NY4Th2_78_C12.b1_A039 NY4 theronts Ichthyophthiri...    44   6.2    1
(CK290775) EST753489 Nicotiana benthamiana mixed tissue cDNA...    44   6.2    1
(CF242295) AGENCOURT_15068832 NICHD_XGC_Emb7 Xenopus (Silura...    44   6.2    1
(ES625874) NGPQM73TR NGPP Nasonia giraulti cDNA, mRNA sequence.    44   6.2    1
(BX571857) Staphylococcus aureus strain MSSA476, complete ge...    36   6.4    16
(AC182653) Populus trichocarpa clone Pop1-120M7, complete se...    36   6.4    3
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    34   6.7    18
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp...    36   6.9    16
(AL359918) Human DNA sequence from clone RP11-567G24 on chro...    34   7.1    5
(AC161108) Mus musculus chromosome 1, clone RP23-224G12, com...    40   7.1    3
(AM468437) Vitis vinifera, whole genome shotgun sequence, co...    40   7.2    3
(AX344552) Sequence 3 from Patent WO0200932.                       34   7.8    8
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   8.3    14
(AC127103) Rattus norvegicus clone CH230-116E2, *** SEQUENCI...    38   8.8    3
(DD010735) Diagnosis of known genetic Parameters within the ...    30   8.8    2
(EU139072) Solanum lycopersicum chromosome 9 clone C09HBa022...    38   8.9    3
(BB979851) Plasmodium berghei str. ANKA cDNA clone: OK009970...    40   9.0    2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   9.0    16
(BF297486) 052PbD03 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ...    40   9.1    2
(CU862048) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   9.2    6
(AC150679) Monodelphis domestica, clone XX-20E6, complete se...    32   9.5    8
(CK808731) Rasgsc1520 Salivary Gland 4th instar 3rd period (...    38   9.6    2
(BV627345) S216P6769FD4.T0 Masuku Pan troglodytes troglodyte...    34   9.9    2

>(AU262113) Dictyostelium discoideum vegetative cDNA clone:VSB584,
           3' end single read.
          Length = 540

 Score =  656 bits (331), Expect(2) = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Plus


Query: 1   gtttattttaaagttgacttttaacgaattcctaaatctttaataaatataactatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtttattttaaagttgacttttaacgaattcctaaatctttaataaatataactatatat 60


Query: 61  agtaaacagatagcagaatagataatgtcaacatttacatttttaattattggaaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtaaacagatagcagaatagataatgtcaacatttacatttttaattattggaaaaaat 120


Query: 121 gataatccattatatgaaatcgaattcccaatcactgtacaaaagaaagaaacctatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gataatccattatatgaaatcgaattcccaatcactgtacaaaagaaagaaacctatgtt 180


Query: 181 cttcaatatatagcacatggttctttagatatagttgaagaacatgtttggaaatcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttcaatatatagcacatggttctttagatatagttgaagaacatgtttggaaatcaaat 240


Query: 241 aatatgtatttaaagataattgacaaatttaataaagttcaaatttcttcttttgttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatatgtatttaaagataattgacaaatttaataaagttcaaatttcttcttttgttact 300


Query: 301 gctggtcatataaaatttttgttactccatg 331
           |||||||||||||||||||||||||||||||
Sbjct: 301 gctggtcatataaaatttttgttactccatg 331

 Score =  242 bits (122), Expect(2) = 0.0
 Identities = 122/122 (100%)
 Strand = Plus / Plus


Query: 340 gatgaagatgcaattaaaaacttttttgttgaagtacacgatctttatttaaaaatacta 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gatgaagatgcaattaaaaacttttttgttgaagtacacgatctttatttaaaaatacta 399


Query: 400 ttaaacccattttatgaatataataaacctataacatcaacagcatttgatgcaaaggtt 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttaaacccattttatgaatataataaacctataacatcaacagcatttgatgcaaaggtt 459


Query: 460 ag 461
           ||
Sbjct: 460 ag 461

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 819,727,401
Number of extensions: 59214235
Number of successful extensions: 4946135
Number of sequences better than 10.0: 163
Length of query: 597
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 574
Effective length of database: 102,190,702,835
Effective search space: 58657463427290
Effective search space used: 58657463427290
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U05654-1 (Contig-U05654-1Q) /CSM_Contig/Contig-U05654-1Q.Seq.d
         (597 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RV6) RecName: Full=Trafficking protein particle complex subu...   271   8e-72
EF191819_1(EF191819|pid:none) Taeniopygia guttata clone 0069P000...   155   1e-36
AK077643_1(AK077643|pid:none) Mus musculus 8 days embryo whole b...   154   2e-36
(Q9CQP2) RecName: Full=Trafficking protein particle complex subu...   154   2e-36
BT048382_1(BT048382|pid:none) Salmo salar clone ssal-evf-568-238...   154   2e-36
(Q3T0F2) RecName: Full=Trafficking protein particle complex subu...   153   4e-36
(Q5RES6) RecName: Full=Trafficking protein particle complex subu...   152   5e-36
BC124169_1(BC124169|pid:none) Danio rerio zgc:152903, mRNA (cDNA...   152   7e-36
(O14582) RecName: Full=Trafficking protein particle complex subu...   152   7e-36
BT078939_1(BT078939|pid:none) Esox lucius clone eluc-evq-507-202...   152   7e-36
BC121995_1(BC121995|pid:none) Xenopus tropicalis hypothetical pr...   152   9e-36
AF291676_1(AF291676|pid:none) Homo sapiens MBP-1 interacting pro...   150   3e-35
AK002369_1(AK002369|pid:none) Mus musculus adult male kidney cDN...   149   7e-35
AE014296_2799(AE014296|pid:none) Drosophila melanogaster chromos...   137   3e-31
BT039412_1(BT039412|pid:none) Zea mays full-length cDNA clone ZM...   135   1e-30
AL731638_2(AL731638|pid:none) Oryza sativa genomic DNA, chromoso...   134   1e-30
AK071179_1(AK071179|pid:none) Oryza sativa Japonica Group cDNA c...   134   2e-30
AY581838_1(AY581838|pid:none) Cynodon dactylon putative TRAPP su...   133   4e-30
EU952276_1(EU952276|pid:none) Zea mays clone 1274869 trafficking...   131   1e-29
(Q9USZ5) RecName: Full=Transport protein particle 20 kDa subunit...   126   4e-28
FN357658_3(FN357658|pid:none) Schistosoma mansoni genome sequenc...   122   1e-26
T29507(T29507) hypothetical protein W05H7.3 - Caenorhabditis ele...   121   1e-26
AY814749_1(AY814749|pid:none) Schistosoma japonicum SJCHGC05949 ...   118   1e-25
CP001330_75(CP001330|pid:none) Micromonas sp. RCC299 chromosome ...   118   1e-25
FN392320_506(FN392320|pid:none) Pichia pastoris GS115 chromosome...   117   2e-25
AP008210_1256(AP008210|pid:none) Oryza sativa (japonica cultivar...   117   3e-25
AL844509_319(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...   116   4e-25
AL606604_10(AL606604|pid:none) Oryza sativa genomic DNA, chromos...   114   2e-24
CR382136_642(CR382136|pid:none) Debaryomyces hansenii strain CBS...   107   3e-22
CR382124_653(CR382124|pid:none) Kluyveromyces lactis strain NRRL...   103   4e-21
CU928176_658(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   100   3e-20
AE016820_615(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...   100   5e-20
AY814952_1(AY814952|pid:none) Schistosoma japonicum SJCHGC02997 ...    93   6e-18
BT068029_1(BT068029|pid:none) Zea mays full-length cDNA clone ZM...    92   1e-17
CU633900_268(CU633900|pid:none) Podospora anserina genomic DNA c...    89   7e-17
CR380950_227(CR380950|pid:none) Candida glabrata strain CBS138 c...    86   8e-16
AC018849_17(AC018849|pid:none) Arabidopsis thaliana chromosome 1...    72   9e-12
AE013599_1295(AE013599|pid:none) Drosophila melanogaster chromos...    62   2e-08
EF678549_1(EF678549|pid:none) Picea sitchensis clone WS02926_L22...    60   4e-08
CR954204_444(CR954204|pid:none) Ostreococcus tauri strain OTTH05...    60   5e-08
(Q5M8X5) RecName: Full=Trafficking protein particle complex subu...    59   8e-08
BT087450_1(BT087450|pid:none) Zea mays full-length cDNA clone ZM...    59   1e-07
AB109206_10(AB109206|pid:none) Oryza sativa Japonica Group genom...    59   1e-07
AP008215_1267(AP008215|pid:none) Oryza sativa (japonica cultivar...    58   2e-07
AK060244_1(AK060244|pid:none) Oryza sativa Japonica Group cDNA c...    58   2e-07
EF144992_1(EF144992|pid:none) Populus trichocarpa clone WS0111_G...    58   2e-07
(A6H7F7) RecName: Full=Trafficking protein particle complex subu...    56   9e-07
BT048620_1(BT048620|pid:none) Salmo salar clone ssal-eve-552-292...    56   9e-07
(Q9JME7) RecName: Full=Trafficking protein particle complex subu...    55   1e-06
BC166907_1(BC166907|pid:none) Rattus norvegicus trafficking prot...    55   1e-06
DQ213452_1(DQ213452|pid:none) Taeniopygia guttata clone 0058P001...    55   1e-06
BT072009_1(BT072009|pid:none) Salmo salar clone ssal-rgf-507-148...    55   2e-06
AC006234_13(AC006234|pid:none) Arabidopsis thaliana chromosome 2...    55   2e-06
BT079259_1(BT079259|pid:none) Esox lucius clone eluc-evq-505-151...    55   2e-06
CP000584_416(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...    54   3e-06
AF161524_1(AF161524|pid:none) Homo sapiens HSPC176 mRNA, complet...    54   3e-06
AY086771_1(AY086771|pid:none) Arabidopsis thaliana clone 27566 m...    54   3e-06
BT050093_1(BT050093|pid:none) Salmo salar clone ssal-evd-551-012...    54   3e-06
BT048031_1(BT048031|pid:none) Salmo salar clone ssal-sjb-020-226...    51   3e-05
(Q9UL33) RecName: Full=Trafficking protein particle complex subu...    50   4e-05
BT057850_1(BT057850|pid:none) Salmo salar clone ssal-evd-579-078...    49   1e-04
AX771003_1(AX771003|pid:none) Sequence 23 from Patent WO03004532.      49   1e-04
AK126779_1(AK126779|pid:none) Homo sapiens cDNA FLJ44827 fis, cl...    48   2e-04
BC087348_1(BC087348|pid:none) Xenopus laevis hypothetical LOC495...    41   0.022
AM910990_299(AM910990|pid:none) Plasmodium knowlesi strain H chr...    40   0.037
(Q5RBK9) RecName: Full=Trafficking protein particle complex subu...    38   0.24
AL844503_164(AL844503|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.92
AM180355_185(AM180355|pid:none) Clostridium difficile 630 comple...    35   1.2
CP000497_155(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    35   2.1
AM910987_159(AM910987|pid:none) Plasmodium knowlesi strain H chr...    34   2.7
CU928178_227(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    34   3.5
A84595(A84595)hypothetical protein At2g20930 [imported] - Arabid...    34   3.5
BC115977_1(BC115977|pid:none) Mus musculus methyltransferase lik...    33   4.6
AM910986_89(AM910986|pid:none) Plasmodium knowlesi strain H chro...    33   4.6
AY077612_1(AY077612|pid:none) Paenibacillus polymyxa cycloinulo-...    33   4.6
FM992690_582(FM992690|pid:none) Candida dubliniensis CD36 chromo...    33   6.0
CP001104_628(CP001104|pid:none) Eubacterium eligens ATCC 27750, ...    33   6.0
AB016282_19(AB016282|pid:none) Bacteriophage phi-105 DNA, comple...    33   6.0
CP001404_483(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51,...    33   6.0
FM992688_197(FM992688|pid:none) Candida dubliniensis CD36 chromo...    33   7.8
(Q811M5) RecName: Full=Complement component C6; Flags: Precursor...    33   7.8

>(Q54RV6) RecName: Full=Trafficking protein particle complex subunit
           2;
          Length = 133

 Score =  271 bits (694), Expect = 8e-72
 Identities = 133/133 (100%), Positives = 133/133 (100%)
 Frame = +1

Query: 85  MSTFTFLIIGKNDNPLYEIEFPITVQKKETYVLQYIAHGSLDIVEEHVWKSNNMYLKIID 264
           MSTFTFLIIGKNDNPLYEIEFPITVQKKETYVLQYIAHGSLDIVEEHVWKSNNMYLKIID
Sbjct: 1   MSTFTFLIIGKNDNPLYEIEFPITVQKKETYVLQYIAHGSLDIVEEHVWKSNNMYLKIID 60

Query: 265 KFNKVQISSFVTAGHIKFLLLHEKKDEDAIKNFFVEVHDLYLKILLNPFYEYNKPITSTA 444
           KFNKVQISSFVTAGHIKFLLLHEKKDEDAIKNFFVEVHDLYLKILLNPFYEYNKPITSTA
Sbjct: 61  KFNKVQISSFVTAGHIKFLLLHEKKDEDAIKNFFVEVHDLYLKILLNPFYEYNKPITSTA 120

Query: 445 FDAKVRKIGTKYF 483
           FDAKVRKIGTKYF
Sbjct: 121 FDAKVRKIGTKYF 133

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 755,429,542
Number of extensions: 14054067
Number of successful extensions: 30087
Number of sequences better than 10.0: 81
Number of HSP's gapped: 30023
Number of HSP's successfully gapped: 83
Length of query: 199
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 77
Effective length of database: 650,044,009
Effective search space: 50053388693
Effective search space used: 50053388693
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

 psg: 0.96  gvh: 0.29  alm: 0.39  top: 0.33  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U05654-1 is cyt