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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05649-1
Contig ID Contig-U05649-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05649-1 (Contig-U05649-1Q) /CSM_Contig/Contig-U05649-1Q.Seq.d
TTTGGATCTTGTGTATATATATAAAAATTGTAATATTAAATAAATAGTGA
ACGAACAAATAAATAAAACAAAAACAGGGAAAGCGAATAATATATATATA
AACAGGTTCAAAAAAAAACTGTATAAAAAGAATATAAAAAAATAATATAA
AACAAAAAAAACAATAAAAAAAAAAAAAAGAGATAGAATGTTAAGAAGTG
TAATTATTATAACTGGTAAAGGTACTTTACTTTTTGAAAAGATATGGGTA
TCAAGTACACAAATGGTAGGAAAAGGAAACATGTTTTCTTCACTTTTAAC
AACTGTTCAAGAATTTTCAAAACAAAGTACTGGAATGTTCATATATCGAA
ATTTGGTGAATCCNCAATTACAATTGTTTATGATGAAAAGACATTATTAA
GATGTTGTTTATTTCATGATGTTGCAGATGGTTCAGAATTTGGAAAACTC
ATTGCAAATAGTTTATTAAGNGGATTTTTATAGAGTTATTTAGTGATACA
GATTTCGTTCATACAGCAGTACATAATTCATCGAAATTCAATTCATTTTC
AAATAAAATCTATGATGCAATTTCACAATCACCTAAAACTGTAGTATTAC
AACTTCGTTTAAATAGAGGTATTCAAAATTCAATTGTGGTCTATAACGAT
GGTAAATCAATCTCTTCAGGTGGTACTGAAGATCAATTGGGTATGACTGC
AAATCTTCAAGCTATGTTATCTTTTTCTAATGATTTATTGTTATCAAAAG
GTGATGGACCAAAAGAAATTATATTAGATACAAATGATAATAATGTTATA
ATTTCAAGAGTAGGACCTGCAAGTTTAGTTTGTATTTGTAAAAAAAATAA
AAATAAAGAAGTTTATCAAAATTCTATTTATGAGGCTGTTATTTTATTGG
ATAAAGTATTTTTATTACTATCTTATTTACAAGGTAGTTTTGTAAGATAA
AAAAAAAAAAAAAAATAATAATAATAAAATTAAAAATAAAAAATAAAAAA
AAATAAAAAAAATATATGT
Gap no gap
Contig length 1019
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4160610
End point 4159586
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05649
List of clone(s) 

est1=SSK219E,1,1020
Translated Amino Acid sequence 
wilciyikivilnk**tnk*ikqkqgkriiyi*tgskkncikri*knnikqkkq*kkkke
iec*ev*ll*lvkvlyflkrygyqvhkw*eketcflhf*qlfknfqnkvlecsyieiw*i
xnyncl**kdiikmlfis*ccrwfriwkthck*FIKXIFIELFSDTDFVHTAVHNSSKFN
SFSNKIYDAISQSPKTVVLQLRLNRGIQNSIVVYNDGKSISSGGTEDQLGMTANLQAMLS
FSNDLLLSKGDGPKEIILDTNDNNVIISRVGPASLVCICKKNKNKEVYQNSIYEAVILLD
KVFLLLSYLQGSFVR*kkkkk****n*k*kikknkknic
Translated Amino Acid sequence (All Frames) 
Frame A:
fgscvyi*kl*y*insertnk*nknrese*yiykqvqkktv*keykkii*nkknnkkkkk
r*nvkkcnyynw*ryftf*kdmgikytngrkrkhvfftfnncsrifktkywnvhiskfge
sxitivydektllrcclfhdvadgsefgkliansllxgfl*sylviqisfiqqyiihrns
ihfqiksmmqfhnhlkl*yynfv*ievfkiqlwsitmvnqslqvvlkinwv*lqifklcy
lflmiycyqkvmdqkkly*iqmiiml*fqe*dlqv*fvfvkkikikkfikilfmrllfyw
ikyfyyyliykvvl*dkkkkknnnnkiknkk*kkikkiy


Frame B:
ldlvyiykncnik*ivneqinktktgkanniyinrfkkklykknikk*yktkktikkkkr
drmlrsviiitgkgtllfekiwvsstqmvgkgnmfssllttvqefskqstgmfiyrnlvn
pqlqlfmmkrhy*dvvyfmmlqmvqnlenslqivy*xdfyrvi**yrfrsysst*fieiq
fifk*nl*cnftit*ncsittsfk*ryskfncgl*rw*inlfrwy*rsigydcksssyvi
ff**fivikr*wtkrnyiryk***cynfksrtckfslyl*kk*k*rslskfyl*gcyfig
*sifitilftr*fckikkkkkiiiiklkiknkkk*kkym


Frame C:
wilciyikivilnk**tnk*ikqkqgkriiyi*tgskkncikri*knnikqkkq*kkkke
iec*ev*ll*lvkvlyflkrygyqvhkw*eketcflhf*qlfknfqnkvlecsyieiw*i
xnyncl**kdiikmlfis*ccrwfriwkthck*FIKXIFIELFSDTDFVHTAVHNSSKFN
SFSNKIYDAISQSPKTVVLQLRLNRGIQNSIVVYNDGKSISSGGTEDQLGMTANLQAMLS
FSNDLLLSKGDGPKEIILDTNDNNVIISRVGPASLVCICKKNKNKEVYQNSIYEAVILLD
KVFLLLSYLQGSFVR*kkkkk****n*k*kikknkknic
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05649-1 (Contig-U05649-1Q)
/CSM_Contig/Contig-U05649-1Q.Seq.d
         (1019 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05649-1 (Contig-U05649-1Q) /CSM_Contig/Conti...  1296  0.0
Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U12411-1 (Contig-U12411-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U11441-1 (Contig-U11441-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U14701-1 (Contig-U14701-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U13088-1 (Contig-U13088-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U10482-1 (Contig-U10482-1Q) /CSM_Contig/Conti...    32  1.1

>Contig-U05649-1 (Contig-U05649-1Q) /CSM_Contig/Contig-U05649-1Q.Seq.d
          Length = 1019

 Score = 1296 bits (654), Expect = 0.0
 Identities = 660/660 (100%)
 Strand = Plus / Plus

                                                                       
Query: 180 gagatagaatgttaagaagtgtaattattataactggtaaaggtactttactttttgaaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gagatagaatgttaagaagtgtaattattataactggtaaaggtactttactttttgaaa 239

                                                                       
Query: 240 agatatgggtatcaagtacacaaatggtaggaaaaggaaacatgttttcttcacttttaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agatatgggtatcaagtacacaaatggtaggaaaaggaaacatgttttcttcacttttaa 299

                                                                       
Query: 300 caactgttcaagaattttcaaaacaaagtactggaatgttcatatatcgaaatttggtga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caactgttcaagaattttcaaaacaaagtactggaatgttcatatatcgaaatttggtga 359

                                                                       
Query: 360 atccncaattacaattgtttatgatgaaaagacattattaagatgttgtttatttcatga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atccncaattacaattgtttatgatgaaaagacattattaagatgttgtttatttcatga 419

                                                                       
Query: 420 tgttgcagatggttcagaatttggaaaactcattgcaaatagtttattaagnggattttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgttgcagatggttcagaatttggaaaactcattgcaaatagtttattaagnggattttt 479

                                                                       
Query: 480 atagagttatttagtgatacagatttcgttcatacagcagtacataattcatcgaaattc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atagagttatttagtgatacagatttcgttcatacagcagtacataattcatcgaaattc 539

                                                                       
Query: 540 aattcattttcaaataaaatctatgatgcaatttcacaatcacctaaaactgtagtatta 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aattcattttcaaataaaatctatgatgcaatttcacaatcacctaaaactgtagtatta 599

                                                                       
Query: 600 caacttcgtttaaatagaggtattcaaaattcaattgtggtctataacgatggtaaatca 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 caacttcgtttaaatagaggtattcaaaattcaattgtggtctataacgatggtaaatca 659

                                                                       
Query: 660 atctcttcaggtggtactgaagatcaattgggtatgactgcaaatcttcaagctatgtta 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 atctcttcaggtggtactgaagatcaattgggtatgactgcaaatcttcaagctatgtta 719

                                                                       
Query: 720 tctttttctaatgatttattgttatcaaaaggtgatggaccaaaagaaattatattagat 779
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tctttttctaatgatttattgttatcaaaaggtgatggaccaaaagaaattatattagat 779

                                                                       
Query: 780 acaaatgataataatgttataatttcaagagtaggacctgcaagtttagtttgtatttgt 839
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 acaaatgataataatgttataatttcaagagtaggacctgcaagtttagtttgtatttgt 839


 Score =  214 bits (108), Expect = 1e-55
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggatcttgtgtatatatataaaaattgtaatattaaataaatagtgaacgaacaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttggatcttgtgtatatatataaaaattgtaatattaaataaatagtgaacgaacaaat 60

                                                           
Query: 61  aaataaaacaaaaacagggaaagcgaataatatatatataaacaggtt 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaataaaacaaaaacagggaaagcgaataatatatatataaacaggtt 108


 Score =  186 bits (94), Expect = 3e-47
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                       
Query: 854 taaagaagtttatcaaaattctatttatgaggctgttattttattggataaagtattttt 913
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 taaagaagtttatcaaaattctatttatgaggctgttattttattggataaagtattttt 913

                                             
Query: 914 attactatcttatttacaaggtagttttgtaaga 947
           ||||||||||||||||||||||||||||||||||
Sbjct: 914 attactatcttatttacaaggtagttttgtaaga 947


>Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Contig-U08024-1Q.Seq.d
          Length = 1400

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 889 ttattttattggataaagtatttt 912
           ||||||||||||||||| ||||||
Sbjct: 95  ttattttattggataaattatttt 72


>Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Contig-U12805-1Q.Seq.d
          Length = 4737

 Score = 38.2 bits (19), Expect = 0.018
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 20   tataaaaattgtaatattaaata 42
            |||||||||||| ||||||||||
Sbjct: 4073 tataaaaattgtgatattaaata 4095


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,649
Number of Sequences: 6905
Number of extensions: 20649
Number of successful extensions: 2452
Number of sequences better than 10.0: 311
length of query: 1019
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1003
effective length of database: 5,564,391
effective search space: 5581084173
effective search space used: 5581084173
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 8. 2
Homology vs DNA 
Query= Contig-U05649-1 (Contig-U05649-1Q) /CSM_Contig/Contig-U05649-1Q.Seq.d
         (1019 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91297) Dictyostelium discoideum slug cDNA, clone SSK219.        720   0.0    3
(AU074281) Dictyostelium discoideum slug cDNA, clone SSK219.      121   1e-23  2
(FC835027) CBHI5908.fwd CBHI Metridium senile tentacle Metri...    44   0.009  2
(AC234739) Brassica rapa subsp. pekinensis clone KBrH014F10,...    44   0.010  5
(AM429081) Vitis vinifera contig VV78X066116.15, whole genom...    36   0.11   2
(GE590381) CCPW14417.b1_A06.ab1 CCP(UWX) Globe Artichoke Cyn...    42   0.46   2
(FP102193) Zebrafish DNA sequence from clone CH73-271C2 in l...    48   0.69   1
(BX469886) Zebrafish DNA sequence from clone CH211-127D20 in...    48   0.69   1
(AC006067) Arabidopsis thaliana chromosome 2 clone T13P21 ma...    48   0.69   1
(AC005398) Arabidopsis thaliana chromosome 2 clone T6B13 map...    48   0.69   1
(FP326738) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.69   1
(EK569413) 1095521067827 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.69   1
(CT159196) Sus scrofa genomic clone CH242-139F17, genomic su...    48   0.69   1
(CW879443) shS2kd28-18.g_029.ab1 Whole-genome shotgun librar...    34   1.0    3
(AC019020) Homo sapiens clone RP11-19P3, WORKING DRAFT SEQUE...    36   1.4    2
(AC025330) Homo sapiens chromosome 11 clone RP11-489O9 map 1...    36   1.4    2
(AP000639) Homo sapiens genomic DNA, chromosome 11q, clone:C...    36   1.5    2
(EB890096) 9900271 ZF26XL Danio rerio cDNA clone 3513894, mR...    36   1.6    2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   2.2    6
(AG661858) Macaca fuscata fuscata DNA, clone: MSB2-081J19_R,...    42   2.2    2
(AC178479) Strongylocentrotus purpuratus clone R3-3039F17, W...    44   2.7    6
(U53181) Caenorhabditis elegans cosmid F36D4, complete seque...    46   2.7    1
(AJ544074) Crassostrea gigas tbetaRI gene for TGF-beta Type ...    46   2.7    1
(AJ427419) Crassostrea gigas partial mRNA for transforming g...    46   2.7    1
(AC177251) Strongylocentrotus purpuratus clone R3-43F5, WORK...    46   2.7    1
(AC173366) Strongylocentrotus purpuratus clone R3-3088E22, W...    46   2.7    1
(AW334878) S40C10 AGS-1 Pneumocystis carinii cDNA 3', mRNA s...    46   2.7    1
(AC179470) Strongylocentrotus purpuratus clone R3-63K23, WOR...    36   4.6    4
(FI264051) CccaBb053-H23JR CccABb Cajanus cajan genomic clon...    38   6.7    2
(DR456351) CM043H01 Cotton Lambda Zap Express Library Gossyp...    36   7.0    2
(DN307020) PL05012B2E07 cDNA from sexually mature hermaphodi...    34   7.2    2
(DN299422) PL04016A1A03 cDNA from sexually mature hermaphodi...    34   7.2    2
(FI233208) CccaBb022-K6JF CccABb Cajanus cajan genomic clone...    38   9.0    2

>(C91297) Dictyostelium discoideum slug cDNA, clone SSK219.
          Length = 690

 Score =  720 bits (363), Expect(3) = 0.0
 Identities = 363/363 (100%)
 Strand = Plus / Plus


Query: 477 tttatagagttatttagtgatacagatttcgttcatacagcagtacataattcatcgaaa 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tttatagagttatttagtgatacagatttcgttcatacagcagtacataattcatcgaaa 195


Query: 537 ttcaattcattttcaaataaaatctatgatgcaatttcacaatcacctaaaactgtagta 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttcaattcattttcaaataaaatctatgatgcaatttcacaatcacctaaaactgtagta 255


Query: 597 ttacaacttcgtttaaatagaggtattcaaaattcaattgtggtctataacgatggtaaa 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttacaacttcgtttaaatagaggtattcaaaattcaattgtggtctataacgatggtaaa 315


Query: 657 tcaatctcttcaggtggtactgaagatcaattgggtatgactgcaaatcttcaagctatg 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcaatctcttcaggtggtactgaagatcaattgggtatgactgcaaatcttcaagctatg 375


Query: 717 ttatctttttctaatgatttattgttatcaaaaggtgatggaccaaaagaaattatatta 776
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttatctttttctaatgatttattgttatcaaaaggtgatggaccaaaagaaattatatta 435


Query: 777 gatacaaatgataataatgttataatttcaagagtaggacctgcaagtttagtttgtatt 836
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gatacaaatgataataatgttataatttcaagagtaggacctgcaagtttagtttgtatt 495


Query: 837 tgt 839
           |||
Sbjct: 496 tgt 498

 Score =  262 bits (132), Expect(3) = 0.0
 Identities = 136/138 (98%)
 Strand = Plus / Plus


Query: 340 catatatcgaaatttggtgaatccncaattacaattgtttatgatgaaaagacattatta 399
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1   catatatcgaaatttggtgaatccgcaattacaattgtttatgatgaaaagacattatta 60


Query: 400 agatgttgtttatttcatgatgttgcagatggttcagaatttggaaaactcattgcaaat 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agatgttgtttatttcatgatgttgcagatggttcagaatttggaaaactcattgcaaat 120


Query: 460 agtttattaagnggattt 477
           ||||||||||| ||||||
Sbjct: 121 agtttattaagaggattt 138

 Score =  180 bits (91), Expect(3) = 0.0
 Identities = 91/91 (100%)
 Strand = Plus / Plus


Query: 858 gaagtttatcaaaattctatttatgaggctgttattttattggataaagtatttttatta 917
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaagtttatcaaaattctatttatgaggctgttattttattggataaagtatttttatta 576


Query: 918 ctatcttatttacaaggtagttttgtaagat 948
           |||||||||||||||||||||||||||||||
Sbjct: 577 ctatcttatttacaaggtagttttgtaagat 607

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,077,698,934
Number of extensions: 64843019
Number of successful extensions: 5339631
Number of sequences better than 10.0: 33
Length of query: 1019
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 995
Effective length of database: 102,084,959,077
Effective search space: 101574534281615
Effective search space used: 101574534281615
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 2
Homology vs Protein 
Query= Contig-U05649-1 (Contig-U05649-1Q) /CSM_Contig/Contig-U05649-1Q.Seq.d
         (1019 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK340649_1(AK340649|pid:none) Acyrthosiphon pisum ACYPI002727 mR...    36   2.5
FM178382_27(FM178382|pid:none) Aliivibrio salmonicida LFI1238 pl...    35   4.2
CP001283_4010(CP001283|pid:none) Bacillus cereus AH820, complete...    35   5.5

>AK340649_1(AK340649|pid:none) Acyrthosiphon pisum ACYPI002727 mRNA,
           clone: 361K9, complete cds, full-insert cDNA sequence
           based on the ESTs (5'-EST:FF306859, 3'-EST:FF306809).
          Length = 125

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
 Frame = +3

Query: 594 VLQLRLNRGIQNSIVVYNDGKSISSGGTEDQ-LGMTANLQAML---SFSNDLLLSKGDGP 761
           VL    + G++N++++ +DG  ++  G  D+   +TA + A L      N L   K D
Sbjct: 10  VLSQANSNGVENTMLLTHDGSLLAFSGYGDRDSSITAIIAANLWNTYHKNGLATLKEDQL 69

Query: 762 KEIILDTNDNNVIISRVGPASLVCICKKNKNKEVYQNSIYEAVILLDKVFLLLSYLQG 935
           + +++D  +  + I +V    L+C+         Y N   E  +L +K+  L SYL G
Sbjct: 70  QLVLMDCTEGRIAIKQVANI-LLCL---------YANRSVEFGLLKEKITALSSYLDG 117

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,247,689,976
Number of extensions: 21965129
Number of successful extensions: 47221
Number of sequences better than 10.0: 3
Number of HSP's gapped: 47161
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 1,061,185,681
Length adjustment: 129
Effective length of query: 210
Effective length of database: 639,555,889
Effective search space: 134306736690
Effective search space used: 134306736690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.72  gvh: 0.43  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U05649-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0