| Contig-U05646-1 |
| Contig ID |
Contig-U05646-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
999 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
3395658 |
| End point |
3396673 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U05646 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 8. 2 |
| Homology vs DNA |
Query= Contig-U05646-1 (Contig-U05646-1Q) /CSM_Contig/Contig-U05646-1Q.Seq.d
(999 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AF482964) Dictyostelium discoideum arsenite transport subun... 353 0.0 5
(C91285) Dictyostelium discoideum slug cDNA, clone SSK202. 333 0.0 4
(AU074274) Dictyostelium discoideum slug cDNA, clone SSK202. 208 1e-55 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.001 15
(AC068654) Genomic Sequence For Oryza sativa (japonica culti... 50 0.001 3
(EK033473) 1092957693303 Global-Ocean-Sampling_GS-31-01-01-1... 32 0.003 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.022 15
(AC104440) Homo sapiens chromosome 3 clone RP11-814M22, comp... 52 0.043 1
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 38 0.054 8
(CU855564) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.10 2
(AC179484) Strongylocentrotus purpuratus clone R3-1035N8, WO... 34 0.11 8
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 0.15 19
(AX344560) Sequence 11 from Patent WO0200932. 36 0.16 12
(AL954223) Pan troglodytes chromosome 22 clone PTB-187O16 ma... 50 0.17 1
(AC200757) Pongo abelii BAC clone CH276-121M10 from chromoso... 50 0.17 1
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.17 1
(AK288596) Oryza sativa Japonica Group cDNA, clone: J090051L... 50 0.17 1
(AC145127) Oryza sativa Japonica Group chromosome 10 clone P... 50 0.17 1
(FB571381) Sequence 248 from Patent EP1865317. 50 0.17 1
(FB571325) Sequence 192 from Patent EP1865317. 50 0.17 1
(EA694992) Sequence 73871 from patent US 7365185. 50 0.17 1
(AC213132) Oryza glaberrima clone OG_BBa0037K02, *** SEQUENC... 50 0.17 1
(CZ957901) 306843 Tomato EcoRI BAC Library Solanum lycopersi... 50 0.17 1
(EE258313) RFAB026TH Castor bean cDNA library from flowers,8... 50 0.17 1
(DT514959) WS02426.B21_E01 PTxD-ICC-N-A-14 Populus trichocar... 50 0.17 1
(DT510333) WS02426.BR_E01 PTxD-ICC-N-A-14 Populus trichocarp... 50 0.17 1
(CU463127) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.18 3
(AM481253) Vitis vinifera contig VV78X008432.6, whole genome... 38 0.23 3
(AC137078) Medicago truncatula clone mth2-10e12, complete se... 32 0.24 9
(CP000013) Borrelia garinii PBi, complete genome. 32 0.25 18
(AF083031) Guillardia theta nucleomorph chromosome 3, comple... 38 0.25 9
(AC145941) Pan troglodytes BAC clone RP43-40O7 from chromoso... 44 0.29 6
(AE017308) Mycoplasma mobile 163K complete genome. 32 0.29 18
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 0.34 9
(AM480066) Vitis vinifera contig VV78X158115.6, whole genome... 36 0.35 3
(AL844506) Plasmodium falciparum 3D7 chromosome 7. 34 0.39 19
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 36 0.40 13
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 36 0.42 8
(DJ386668) Diagnosis of Diseases Associated with Metastasis. 44 0.45 3
(AX281464) Sequence 128 from Patent WO0177376. 44 0.45 3
(AR553200) Sequence 8331 from patent US 6747137. 40 0.47 3
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 44 0.53 4
(FP102182) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.54 3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 40 0.65 10
(AC131521) Rattus norvegicus 2 BAC CH230-275M7 (Children's H... 48 0.67 1
(AC142066) Rattus norvegicus clone CH230-198P20, *** SEQUENC... 48 0.67 1
(AC139414) Rattus norvegicus clone CH230-34A16, WORKING DRAF... 48 0.67 1
(EK026259) 1092955367455 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.67 1
(EJ952641) 1093018956205 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.67 1
(DX544427) GH_MBb0035M18r GH_MBb Gossypium hirsutum genomic ... 48 0.67 1
(CE704821) tigr-gss-dog-17000369094649 Dog Library Canis lup... 48 0.67 1
(DT782009) 126454908 TH1 Tribolium castaneum cDNA clone 88C5... 48 0.67 1
(BF938985) 7r03e11.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone ... 48 0.67 1
(GD171664) OXAX-aaa55f07.g1 Oxytricha_pSMART_OXAX Sterkiella... 48 0.67 1
(AE017263) Mesoplasma florum L1 complete genome. 48 0.67 1
(CU469164) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.69 3
(AX345092) Sequence 163 from Patent WO0200928. 46 0.72 2
(AP009247) Candidatus Vesicomyosocius okutanii HA DNA, compl... 34 0.83 17
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 30 0.83 16
(CR940348) Theileria annulata genomic DNA chromosome 2. 46 0.92 18
(CX580359) TTE00027275 Amplicon Express - Conjugative Form T... 38 0.99 3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 1.0 18
(AC006604) Caenorhabditis elegans cosmid C07F11, complete se... 46 1.1 4
(CU041358) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.1 5
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 40 1.1 15
(AM470879) Vitis vinifera contig VV78X036104.7, whole genome... 30 1.2 7
(AC200629) Pongo abelii BAC clone CH276-421J22 from chromoso... 34 1.4 2
(AC160944) Pan troglodytes BAC clone CH251-7D22 from chromos... 34 1.4 2
(AC204180) Nomascus leucogenys leucogenys clone CH271-134G23... 34 1.4 2
(AC202492) Medicago truncatula clone mth2-18i9, WORKING DRAF... 34 1.4 2
(AX349036) Sequence 494 from Patent WO0202807. 38 1.4 6
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 36 1.4 18
(AC234702) Medicago truncatula chromosome 7 clone mth2-15g4,... 34 1.4 2
(BH002310) BMBAC02H06SP6_PSU Brugia malayi Genomic Bac Libra... 36 1.5 2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 1.5 15
(CP000993) Borrelia recurrentis A1, complete genome. 34 1.7 16
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 1.7 13
(AL606589) Oryza sativa genomic DNA, chromosome 4, BAC clone... 44 1.7 4
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 1.8 13
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 34 1.8 13
(FB571361) Sequence 228 from Patent EP1865317. 30 1.8 7
(FB571305) Sequence 172 from Patent EP1865317. 30 1.8 7
(CU929387) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.4 3
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 34 2.5 7
(AC179214) Strongylocentrotus purpuratus clone R3-1107D15, W... 42 2.6 4
(CR376776) Zebrafish DNA sequence from clone CH211-13I23. 46 2.7 1
(CR352215) Zebrafish DNA sequence from clone CH211-235F1 in ... 46 2.7 1
(AC164626) Mus musculus 6 BAC RP23-472D18 (Roswell Park Canc... 46 2.7 1
(AC121977) Mus musculus BAC clone RP24-287A16 from chromosom... 46 2.7 1
(AC099741) Mus musculus strain C57BL6/J chromosome 6 clone R... 46 2.7 1
(AC217138) MACACA MULATTA BAC clone CH250-161N14 from chromo... 46 2.7 1
(AC212487) MACACA MULATTA BAC clone CH250-99F15 from chromos... 46 2.7 1
(AC211974) Pan troglodytes BAC clone CH251-709H11 from chrom... 46 2.7 1
(AC145881) Pan troglodytes BAC clone RP43-7E18 from chromoso... 46 2.7 1
(FB728177) Sequence 660 from Patent WO2003013533. 46 2.7 1
(FB510648) Sequence 2 from Patent WO2008098256. 46 2.7 1
(FB510647) Sequence 1 from Patent WO2008098256. 46 2.7 1
(DD156882) Means and methods for improved treatment of cance... 46 2.7 1
(DD156330) Means and methods for improved treatment of cance... 46 2.7 1
(DD144742) Means and methods for improved treatment of cance... 46 2.7 1
(DD142673) Means and methods for improved treatment of cance... 46 2.7 1
(DD134571) Means and methods for improved treatment of cance... 46 2.7 1
(CS647972) Sequence 22 from Patent WO2007058896. 46 2.7 1
(CS623042) Sequence 660 from Patent WO2003013537. 46 2.7 1
(AX707892) Sequence 660 from Patent WO03013536. 46 2.7 1
(AX706962) Sequence 660 from Patent WO03013534. 46 2.7 1
(GC697717) Sequence 12962 from patent US 6812339. 46 2.7 1
(GC696619) Sequence 11863 from patent US 6812339. 46 2.7 1
(DQ680079) Homo sapiens truncated cytochrome P450, family 3,... 46 2.7 1
(AC005020) Homo sapiens BAC clone GS1-259H13 from 7, complet... 46 2.7 1
(AC145951) Pan troglodytes chromosome 7 clone RP43-11G15, WO... 46 2.7 1
(AC097383) Rattus norvegicus clone CH230-6B6, WORKING DRAFT ... 46 2.7 1
(AC231721) Tachyglossus aculeatus clone TA_Ba-434M9, WORKING... 46 2.7 1
(AC226288) Tachyglossus aculeatus clone TA_Ba-383M9, WORKING... 46 2.7 1
(AC177681) Strongylocentrotus purpuratus clone R3-1014B2, WO... 46 2.7 1
(AC006889) Caenorhabditis elegans clone Y65B4, *** SEQUENCIN... 46 2.7 1
(BH146032) TDGFD12TH cTOG Solanum lycopersicum genomic clone... 46 2.7 1
(FH153303) CHO_OF3066xc14r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 2.7 1
(FH153219) CHO_OF3066xc14f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 2.7 1
(EK575921) 1095521183195 Global-Ocean-Sampling_GS-32-01-01-1... 46 2.7 1
(EJ990691) 1093023047459 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.7 1
(EJ184581) 1092344144159 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.7 1
(EJ055326) 1095456022575 Global-Ocean-Sampling_GS-26-01-01-1... 46 2.7 1
(EJ051821) 1095456002977 Global-Ocean-Sampling_GS-26-01-01-1... 46 2.7 1
(EJ040844) 1095454092768 Global-Ocean-Sampling_GS-26-01-01-1... 46 2.7 1
(EJ024687) 1095454015506 Global-Ocean-Sampling_GS-26-01-01-1... 46 2.7 1
(EI458781) PV_GBa0061G23.f PV_GBa Phaseolus vulgaris genomic... 46 2.7 1
(DX483849) Cpl25547 Papaya Genomic DNA BAC Library Carica pa... 46 2.7 1
(DX480330) Cpl21982 Papaya Genomic DNA BAC Library Carica pa... 46 2.7 1
(CZ974301) 174865 Tomato MboI BAC Library Solanum lycopersic... 46 2.7 1
(CZ724879) OC__Ba0051I21.r OC__Ba Oryza coarctata genomic cl... 46 2.7 1
(BZ195186) CH230-415P20.TV CHORI-230 Segment 2 Rattus norveg... 46 2.7 1
(BM816316) HC109B05_T3.ab1 HC Hordeum vulgare subsp. vulgare... 46 2.7 1
(BM816315) HC112D09_T3.ab1 HC Hordeum vulgare subsp. vulgare... 46 2.7 1
(BM816314) HC106A02_T3.ab1 HC Hordeum vulgare subsp. vulgare... 46 2.7 1
(FD482185) NADI-aaa31d07.g1 Rhodnius_prolixus_EST_NADI_5th_i... 46 2.7 1
(FD481200) NADI-aaa31d07.b1 Rhodnius_prolixus_EST_NADI_5th_i... 46 2.7 1
(AC235287) Glycine max strain Williams 82 clone GM_WBb0053I0... 36 2.7 5
(AX344559) Sequence 10 from Patent WO0200932. 34 3.0 13
(AL844504) Plasmodium falciparum 3D7 chromosome 5. 38 3.2 18
(AX344566) Sequence 17 from Patent WO0200932. 32 3.2 12
(AC210122) Macaca mulatta BAC CH250-325O21 (Children's Hosp... 38 3.5 4
(CP000395) Borrelia afzelii PKo, complete genome. 32 3.7 20
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 4.0 10
(CZ544579) SRAA-aad56g03.g1 Strongyloides ratti whole genome... 34 4.0 3
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 32 4.0 15
(AC148565) Papio anubis clone RP41-260B21, WORKING DRAFT SEQ... 38 4.2 5
(CP000976) Borrelia duttonii Ly, complete genome. 34 4.2 16
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 4.4 18
(AC149473) Medicago truncatula clone mth2-119h6, complete se... 40 4.5 5
(EA679742) Sequence 58621 from patent US 7365185. 36 4.7 3
(AC069561) Mus musculus strain C57BL/6J chromosome 9 clone r... 34 4.8 6
(EK417863) 1095515480161 Global-Ocean-Sampling_GS-31-01-01-1... 38 4.9 3
(EF567028) Globodera pallida isolate Ca_GPS4 cathepsin L gen... 44 5.5 2
(AC148387) Rhinolophus ferrumequinum clone VMRC7-122D13, WOR... 42 5.7 3
(AM471416) Vitis vinifera contig VV78X149710.2, whole genome... 34 5.8 3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 6.1 13
(CR354584) Zebrafish DNA sequence from clone DKEY-7B6 in lin... 38 6.2 8
(AL008866) Caenorhabditis elegans Cosmid B0019. 40 6.3 3
(AC153784) Rhinolophus ferrumequinum clone VMRC7-274G24, WOR... 42 6.4 3
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 32 6.5 17
(EA688297) Sequence 67176 from patent US 7365185. 36 6.5 3
(GC701944) Sequence 17189 from patent US 6812339. 34 6.5 9
(AY217738) Eimeria tenella apicoplast, complete genome. 30 6.6 8
(FB571362) Sequence 229 from Patent EP1865317. 34 6.6 6
(FB571306) Sequence 173 from Patent EP1865317. 34 6.6 6
(EK077842) 1092961071221 Global-Ocean-Sampling_GS-31-01-01-1... 32 6.7 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 32 6.8 9
(CE845259) tigr-gss-dog-17000332724440 Dog Library Canis lup... 42 6.9 2
(EI359414) GM_WBc0112C12.f GM_WBc Glycine max genomic clone ... 40 7.1 2
(AC106463) Rattus norvegicus clone CH230-209I12, *** SEQUENC... 38 7.4 3
(EI906607) VUH2-43B5TR VUUBBa (VUH2) Vigna unguiculata genom... 36 7.5 2
(AC074371) Homo sapiens chromosome 8 clone RP11-509P12, WORK... 36 7.8 6
(EI311392) GM_WBc0042C17.f GM_WBc Glycine max genomic clone ... 42 7.8 2
(AC230398) Bos taurus clone CH240-510A7, WORKING DRAFT SEQUE... 44 7.9 3
(AM460595) Vitis vinifera contig VV79X004509.2, whole genome... 34 7.9 4
(EI343053) GM_WBc0087K17.r GM_WBc Glycine max genomic clone ... 42 7.9 2
(AC140981) Mus musculus chromosome 9 clone RP23-282G22, comp... 38 8.4 6
(AX344565) Sequence 16 from Patent WO0200932. 36 8.4 12
(AX344555) Sequence 6 from Patent WO0200932. 34 8.4 12
(EI378549) POTD082TF Solanum tuberosum RHPOTKEY BAC ends Sol... 42 8.7 2
(AJ855509) Brassica rapa subsp. pekinensis GSS, clone KBrH05... 28 8.8 4
(BH134712) ENTOL94TF Entamoeba histolytica Sheared DNA Entam... 38 8.9 2
(AM427483) Vitis vinifera contig VV78X172617.3, whole genome... 34 9.0 3
(BK000554) TPA_inf: Chlamydomonas reinhardtii chloroplast, c... 36 9.1 7
(AM465887) Vitis vinifera, whole genome shotgun sequence, co... 40 9.1 3
(FJ423446) Chlamydomonas reinhardtii strain CC-503 cw92 mt+ ... 36 9.1 7
(AP003515) Clostridium perfringens str. 13 plasmid pCP13 DNA... 40 9.2 5
(AC154364) Mus musculus BAC clone RP24-559G11 from chromosom... 36 9.2 6
(CP001205) Borrelia burgdorferi ZS7, complete genome. 32 9.4 17
(DX310952) OR_ABa0224E13.f OR_ABa Oryza ridleyi genomic clon... 36 9.5 2
(EK536791) 1095516034293 Global-Ocean-Sampling_GS-32-01-01-1... 34 9.7 2
>(AF482964) Dictyostelium discoideum arsenite transport subunit B
(arsB) gene, complete cds.
Length = 2363
Score = 353 bits (178), Expect(5) = 0.0
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 357 ctatagttaatattataaagttaatatttaaatttagagttgcaataatattaacactag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 ctatagttaatattataaagttaatatttaaatttagagttgcaataatattaacactag 1588
Query: 417 ttttaattggatttttcattggtatgcatatgggtttcacggtattatttggtgtttcaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 ttttaattggatttttcattggtatgcatatgggtttcacggtattatttggtgtttcaa 1648
Query: 477 tattaatgatttgtgaaagaaaagatatcactgatattatcaatagtgttgattggga 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 tattaatgatttgtgaaagaaaagatatcactgatattatcaatagtgttgattggga 1706
Score = 335 bits (169), Expect(5) = 0.0
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 539 tttagtggtttgtttgtactggttgaaggtttcgatagacaatttgaaaaagaagcttgg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1720 tttagtggtttgtttgtactggttgaaggtttcgatagacaatttgaaaaagaagcttgg 1779
Query: 599 accattttagaaccattcgtaccaatcgattcaactcatttgaatgttttaaagattttc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1780 accattttagaaccattcgtaccaatcgattcaactcatttgaatgttttaaagattttc 1839
Query: 659 atattttctatattaatattagtactttgtaatatattaggaaatgtac 707
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1840 atattttctatattaatattagtactttgtaatatattaggaaatgtac 1888
Score = 278 bits (140), Expect(5) = 0.0
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 708 acctttggttttatcactatcaccaagactattagaagctttagctcctgatttcacttg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 acctttggttttatcactatcaccaagactattagaagctttagctcctgatttcacttg 1946
Query: 768 gattctattggcttttgtttctactgtcgctggtaatctaactttagttggtagtgttgc 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 gattctattggcttttgtttctactgtcgctggtaatctaactttagttggtagtgttgc 2006
Query: 828 aaatttaattgtagctgaaa 847
||||||||||||||||||||
Sbjct: 2007 aaatttaattgtagctgaaa 2026
Score = 202 bits (102), Expect(5) = 0.0
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 855 catgaaattggttttttagaatatttaaaatttggtgtaccttcaactatattagtcatt 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 catgaaattggttttttagaatatttaaaatttggtgtaccttcaactatattagtcatt 2100
Query: 915 ttaattggtgtaccgattgtagttttaattggtaaataattt 956
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 ttaattggtgtaccgattgtagttttaattggtaaataattt 2142
Score = 30.2 bits (15), Expect(5) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 985 ataaaataaaattat 999
|||||||||||||||
Sbjct: 2171 ataaaataaaattat 2185
Score = 208 bits (105), Expect(3) = 1e-79
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 aaaaaatttaaattcaaattttaatcaattaattgaaactgtaaatccaaaagtagaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 aaaaaatttaaattcaaattttaatcaattaattgaaactgtaaatccaaaagtagaaga 1232
Query: 61 gattgataataatcatcatgatgatgatggtgcaaataatcaatc 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1233 gattgataataatcatcatgatgatgatggtgcaaataatcaatc 1277
Score = 129 bits (65), Expect(3) = 1e-79
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 218 ggtggacatgcaatattattagttgcatcatcaatggattcaattgatttaagtgattgt 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 ggtggacatgcaatattattagttgcatcatcaatggattcaattgatttaagtgattgt 1449
Query: 278 tcaat 282
|||||
Sbjct: 1450 tcaat 1454
Score = 26.3 bits (13), Expect(3) = 1e-79
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 414 tagttttaattgg 426
|||||||||||||
Sbjct: 2120 tagttttaattgg 2132
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,182,581,383
Number of extensions: 80416490
Number of successful extensions: 7010485
Number of sequences better than 10.0: 194
Length of query: 999
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 975
Effective length of database: 102,084,959,077
Effective search space: 99532835100075
Effective search space used: 99532835100075
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 8. 2 |
| Homology vs Protein |
Query= Contig-U05646-1 (Contig-U05646-1Q) /CSM_Contig/Contig-U05646-1Q.Seq.d
(999 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF482964_1(AF482964|pid:none) Dictyostelium discoideum arsenite ... 340 6e-92
AP008216_718(AP008216|pid:none) Oryza sativa (japonica cultivar-... 54 2e-14
AB222273_1(AB222273|pid:none) Oryza sativa Japonica Group Lsi2 m... 52 1e-13
AC113930_1(AC113930|pid:none) Oryza sativa (japonica cultivar-gr... 52 1e-13
AK065330_1(AK065330|pid:none) Oryza sativa Japonica Group cDNA c... 54 2e-13
AC025783_22(AC025783|pid:none) Oryza sativa chromosome 10 BAC OS... 54 2e-13
EU955703_1(EU955703|pid:none) Zea mays clone 1542859 citrate tra... 49 1e-12
BT041940_1(BT041940|pid:none) Zea mays full-length cDNA clone ZM... 49 1e-12
AC153125_21(AC153125|pid:none) Medicago truncatula clone mth2-74... 51 1e-12
CP000117_3589(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 47 4e-12
BT055176_1(BT055176|pid:none) Zea mays full-length cDNA clone ZM... 50 7e-12
CP000113_3730(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 45 1e-09
CP000251_1672(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 43 4e-09
CP001032_886(CP001032|pid:none) Opitutus terrae PB90-1, complete... 48 4e-09
AP008226_1798(AP008226|pid:none) Thermus thermophilus HB8 genomi... 45 6e-09
AE017221_1441(AE017221|pid:none) Thermus thermophilus HB27, comp... 45 6e-09
CP001359_2245(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 42 8e-09
AE000782_2281(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 49 5e-08
CP000697_303(CP000697|pid:none) Acidiphilium cryptum JF-5, compl... 51 2e-06
BT055949_1(BT055949|pid:none) Zea mays full-length cDNA clone ZM... 55 3e-06
BT038379_1(BT038379|pid:none) Zea mays full-length cDNA clone ZM... 55 3e-06
BT063496_1(BT063496|pid:none) Zea mays full-length cDNA clone ZM... 55 3e-06
BA000023_2424(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 40 4e-06
AC090485_6(AC090485|pid:none) Genomic Sequence for Oryza sativa,... 53 2e-05
CP000804_3499(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 51 6e-05
CP000686_916(CP000686|pid:none) Roseiflexus sp. RS-1, complete g... 50 9e-05
CP001037_4325(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 48 2e-04
AE006641_128(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 35 2e-04
CP000448_2098(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 32 3e-04
CP001185_1875(CP001185|pid:none) Thermosipho africanus TCF52B, c... 46 0.002
AY553365_1(AY553365|pid:none) Elaeis oleifera sodium sulfate sym... 43 0.003
CP000769_2110(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 45 0.003
CP000909_78(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl,... 45 0.003
AE017355_4572(AE017355|pid:none) Bacillus thuringiensis serovar ... 32 0.006
AE016877_3288(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 33 0.006
CP001176_3318(CP001176|pid:none) Bacillus cereus B4264, complete... 33 0.006
CP000473_4286(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 44 0.007
CP001014_1152(CP001014|pid:none) Thermoproteus neutrophilus V24S... 44 0.007
CP000504_1874(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 44 0.007
CP001186_3380(CP001186|pid:none) Bacillus cereus G9842, complete... 33 0.008
CP001337_1112(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 43 0.015
CP000360_3619(CP000360|pid:none) Acidobacteria bacterium Ellin34... 43 0.015
CP000764_2070(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 30 0.017
CP000485_4227(CP000485|pid:none) Bacillus thuringiensis str. Al ... 32 0.019
CP001176_4848(CP001176|pid:none) Bacillus cereus B4264, complete... 32 0.019
CP001283_4904(CP001283|pid:none) Bacillus cereus AH820, complete... 32 0.019
CP000968_605(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 43 0.020
AE017194_5015(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 32 0.025
CP000227_4605(CP000227|pid:none) Bacillus cereus Q1, complete ge... 32 0.025
CP001177_4827(CP001177|pid:none) Bacillus cereus AH187, complete... 32 0.025
AE016877_4675(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 32 0.025
BA000043_2936(BA000043|pid:none) Geobacillus kaustophilus HTA426... 32 0.025
CP001131_2163(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 42 0.026
CP000680_3509(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 39 0.032
CP000386_1007(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 42 0.044
AE016879_4757(AE016879|pid:none) Bacillus anthracis str. Ames, c... 30 0.054
BA000039_1776(BA000039|pid:none) Thermosynechococcus elongatus B... 41 0.075
CP000742_1445(CP000742|pid:none) Methanococcus vannielii SB, com... 40 0.098
CP001142_132(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 40 0.13
CP000660_1364(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 40 0.13
CP001398_2110(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 40 0.17
CP000325_2731(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 40 0.17
CP001022_755(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 29 0.25
AE009441_1715(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 39 0.28
AE017282_751(AE017282|pid:none) Methylococcus capsulatus str. Ba... 34 0.32
CP001013_3333(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 39 0.37
CP000562_2120(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 38 0.48
CP000141_1966(CP000141|pid:none) Carboxydothermus hydrogenoforma... 38 0.63
CP000141_1283(CP000141|pid:none) Carboxydothermus hydrogenoforma... 38 0.63
CP001140_315(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 38 0.63
CP000230_2448(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 36 0.69
AM408590_2702(AM408590|pid:none) Mycobacterium bovis BCG Pasteur... 37 0.83
BX248343_151(BX248343|pid:none) Mycobacterium bovis subsp. bovis... 37 0.83
AY872124_1(AY872124|pid:none) Synthetic construct hypothetical p... 35 0.89
CP000608_1081(CP000608|pid:none) Francisella tularensis subsp. t... 35 0.89
CP000439_374(CP000439|pid:none) Francisella tularensis subsp. no... 35 0.89
CP000852_991(CP000852|pid:none) Caldivirga maquilingensis IC-167... 37 1.1
CP000854_2008(CP000854|pid:none) Mycobacterium marinum M, comple... 37 1.1
AP010904_644(AP010904|pid:none) Desulfovibrio magneticus RS-1 DN... 36 1.8
AF268611_6(AF268611|pid:none) Uncultured marine group II euryarc... 36 1.8
AP010904_2121(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 36 2.4
CP001581_842(CP001581|pid:none) Clostridium botulinum A2 str. Ky... 35 4.1
AM412317_775(AM412317|pid:none) Clostridium botulinum A str. ATC... 35 4.1
CP000591_132(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 35 4.1
CP001402_1968(CP001402|pid:none) Sulfolobus islandicus M.16.4, c... 35 4.1
(O07187) RecName: Full=Uncharacterized transporter Rv2685/MT2759... 35 4.1
CP001403_2075(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 35 4.1
AE017354_2815(AE017354|pid:none) Legionella pneumophila subsp. p... 35 4.1
CR628337_2802(CR628337|pid:none) Legionella pneumophila str. Len... 35 4.1
GM015512_152(GM015512|pid:none) Sequence 342 from Patent EP19234... 35 5.3
AE000512_921(AE000512|pid:none) Thermotoga maritima MSB8, comple... 35 5.3
CP000675_3047(CP000675|pid:none) Legionella pneumophila str. Cor... 35 5.4
CP000159_569(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 35 5.4
CP000254_2940(CP000254|pid:none) Methanospirillum hungatei JF-1,... 35 5.4
CP000553_149(CP000553|pid:none) Prochlorococcus marinus str. NAT... 35 5.4
CP000878_93(CP000878|pid:none) Prochlorococcus marinus str. MIT ... 35 5.4
CR628336_2940(CR628336|pid:none) Legionella pneumophila str. Par... 35 5.4
CP000095_129(CP000095|pid:none) Prochlorococcus marinus str. NAT... 35 5.4
CP000477_1319(CP000477|pid:none) Methanosaeta thermophila PT, co... 32 6.8
AF036485_18(AF036485|pid:none) Lactococcus lactis subsp. cremori... 34 7.0
AJ248288_147(AJ248288|pid:none) Pyrococcus abyssi complete genom... 34 7.0
CP000702_1779(CP000702|pid:none) Thermotoga petrophila RKU-1, co... 34 7.0
AP008230_1753(AP008230|pid:none) Desulfitobacterium hafniense Y5... 34 7.0
AE016879_1808(AE016879|pid:none) Bacillus anthracis str. Ames, c... 34 9.1
CP000485_1648(CP000485|pid:none) Bacillus thuringiensis str. Al ... 34 9.1
AE017355_1777(AE017355|pid:none) Bacillus thuringiensis serovar ... 34 9.1
CP001283_1919(CP001283|pid:none) Bacillus cereus AH820, complete... 34 9.1
CP000001_1764(CP000001|pid:none) Bacillus cereus E33L, complete ... 34 9.1
AE016958_2805(AE016958|pid:none) Mycobacterium avium subsp. para... 34 9.1
>AF482964_1(AF482964|pid:none) Dictyostelium discoideum arsenite
transport subunit B (arsB) gene, complete cds.
Length = 563
Score = 340 bits (871), Expect = 6e-92
Identities = 185/240 (77%), Positives = 187/240 (77%), Gaps = 3/240 (1%)
Frame = +2
Query: 2 KNLNSNFNQLIETVNPKVEEIXXXXXXXXXXXXQSXXXXXXXXXXXXXXXXQHXXXXXXX 181
KNLNSNFNQLIETVNPKVEEI QS QH
Sbjct: 243 KNLNSNFNQLIETVNPKVEEIDNNHHDDDGANNQSKNEKEMENINKEVEEEQHNNDDDDD 302
Query: 182 XXXXXXXXXXXXXXHAILLVASSMDSIDLSDCSIINKDKKKKENFIEIYFNSKEKSIETI 361
HAILLVASSMDSIDLSDCSIINKDKKKKENFIEIYFNSKEKSIETI
Sbjct: 303 DGFNENKNNNNNGGHAILLVASSMDSIDLSDCSIINKDKKKKENFIEIYFNSKEKSIETI 362
Query: 362 VNIIKLIFKFRVAIILTLVLIGFFIGMHMGFTVLFGVSILMICERKDITDIINSVDWD-- 535
VNIIKLIFKFRVAIILTLVLIGFFIGMHMGFTVLFGVSILMICERKDITDIINSVDW+
Sbjct: 363 VNIIKLIFKFRVAIILTLVLIGFFIGMHMGFTVLFGVSILMICERKDITDIINSVDWELL 422
Query: 536 -YFSGLFVLVEGFDRQFEKEAWTILEPFVPIDSTHLNVLKIFIFSILILVLCNILGNVHL 712
+FSGLFVLVEGFDRQFEKEAWTILEPFVPIDSTHLNVLKIFIFSILILVLCNILGNV L
Sbjct: 423 LFFSGLFVLVEGFDRQFEKEAWTILEPFVPIDSTHLNVLKIFIFSILILVLCNILGNVPL 482
Score = 93.2 bits (230), Expect(2) = 1e-22
Identities = 57/84 (67%), Positives = 60/84 (71%)
Frame = +1
Query: 595 LDHFRTIRTNRFNSFECFKDFHIFYINISTL*YIRKCTPLVLSLSPRLLEALAPDFTWIL 774
L+ F I + N + F IF I I L I PLVLSLSPRLLEALAPDFTWIL
Sbjct: 447 LEPFVPIDSTHLNVLKIF----IFSILILVLCNILGNVPLVLSLSPRLLEALAPDFTWIL 502
Query: 775 LAFVSTVAGNLTLVGSVANLIVAE 846
LAFVSTVAGNLTLVGSVANLIVAE
Sbjct: 503 LAFVSTVAGNLTLVGSVANLIVAE 526
Score = 37.7 bits (86), Expect(2) = 1e-22
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 855 HEIGFLEYLKFGVPST 902
HEIGFLEYLKFGVPST
Sbjct: 532 HEIGFLEYLKFGVPST 547
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 983,975,157
Number of extensions: 15914952
Number of successful extensions: 64390
Number of sequences better than 10.0: 109
Number of HSP's gapped: 64347
Number of HSP's successfully gapped: 182
Length of query: 333
Length of database: 1,061,185,681
Length adjustment: 129
Effective length of query: 204
Effective length of database: 639,555,889
Effective search space: 130469401356
Effective search space used: 130469401356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |