Contig-U05633-1
Contig ID Contig-U05633-1
Contig update 2001. 8.30
Contig sequence
>Contig-U05633-1 (Contig-U05633-1Q) /CSM_Contig/Contig-U05633-1Q.Seq.d
CTCCAACTCAACAACCAATTAATACAAGTGTTAATAATAATAACAATATA
ATACAACAAAGATCAAATTCAATTTCTTCTTCAATTAATATACCATCATC
AATTAGAAGATCATTTAGTCATTAATATAAATGGTAATGGTAATGGTAAT
AATGTTGGAAATGTGAATGGATCGTCATCTTCTTTATCAAATACTACATC
AGCCTTTAGTCCAAATGTTGTATCAAATAGTTATGGAAGTAATGGTAGCA
GTGGTTGTAATAGCNTTAGTAGTATGAGTAGTATGATGATGATGATGAGT
GGTGGTAACCAACAATTTTTAATTGGTTCACCCTCTGAAATGATAATGCA
TAAACTAAAAGAGATTGAAAGATTAAATAAAGAAGCAATTCAAAAAGATC
AAGAATTGAATCAAGTTAAAAAGATTGCTGAGGCTGAAAGATCAAGATTA
TGTCTTTTGAAGGATAAATATAAAGAAGTTCGAAATGAATTGATTGAAAA
AGAATTAGTAAAATAATCGTTACGAAAATTTAACTAAAACTTTTTTTAAA
AAAAAAAAAAATCTCAACTTTATATTTAAATATCATATCATCATCAATAT
ATAACATATACCACATATTTATAACTCTCCCCACCCTTTTTGNACATTTT
ATAATTTATAACTTTTTTTACTTTTTTTTTTTTTAAACCAAAAAAAAACA
TAATAAAAAATTTTTGATTTTTCCATCAAAAAAA

Gap no gap
Contig length 734
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1239416
End point 1240152
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05633
List of clone(s)

est1=SSK116E,1,735
Translated Amino Acid sequence
lqlnnqliqvliiiti*YNKDQIQFLLQLIYHHQLEDHLVININGNGNGNNVGNVNGSSS
SLSNTTSAFSPNVVSNSYGSNGSSGCNSXSSMSSMMMMMSGGNQQFLIGSPSEMIMHKLK
EIERLNKEAIQKDQELNQVKKIAEAERSRLCLLKDKYKEVRNELIEKELVK*slrkfn*n
ff*kkkksqlyi*isyhhqyityttyl*lsppflxil*fitfftffffkpkkniiknf*f
fhqk


Translated Amino Acid sequence (All Frames)
Frame A:
lqlnnqliqvliiiti*YNKDQIQFLLQLIYHHQLEDHLVININGNGNGNNVGNVNGSSS
SLSNTTSAFSPNVVSNSYGSNGSSGCNSXSSMSSMMMMMSGGNQQFLIGSPSEMIMHKLK
EIERLNKEAIQKDQELNQVKKIAEAERSRLCLLKDKYKEVRNELIEKELVK*slrkfn*n
ff*kkkksqlyi*isyhhqyityttyl*lsppflxil*fitfftffffkpkkniiknf*f
fhqk


Frame B:
snsttn*ykc****qynttkikfnfffn*ytiin*kii*sli*mvmvmvimlem*mdrhl
lyqilhqplvqmlyqivmevmvavvvialvv*vv*****vvvtnnf*lvhplk**cin*k
rlkd*ikkqfkkikn*iklkrllrlkdqdyvf*rinikkfemn*lkkn**nnryenltkt
ffkkkknlnfifkyhiiini*hiphiynsphpfxtfynl*lfllffflnqkkt**kifdf
sikk


Frame C:
ptqqpintsvnnnnniiqqrsnsisssinipssirrsfsh*ykw*w*w**cwkcewivif
fikyyisl*skccik*lwk*w*qwl**x**ye*yddddeww*ptifnwftl*ndna*tkr
d*kik*rsnskrsriess*kdc*g*kikimsfeg*i*rssk*id*kriskiivtki*lkl
flkkkkistlylniisssiyniyhifitlptlfxhfiiynffyffff*tkkkhnkkflif
pskk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05633-1 (Contig-U05633-1Q)
/CSM_Contig/Contig-U05633-1Q.Seq.d
(734 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05633-1 (Contig-U05633-1Q) /CSM_Contig/Conti... 1078 0.0
Contig-U12319-1 (Contig-U12319-1Q) /CSM_Contig/Conti... 52 9e-07
Contig-U14766-1 (Contig-U14766-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U03328-1 (Contig-U03328-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U14635-1 (Contig-U14635-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U11312-1 (Contig-U11312-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U09369-1 (Contig-U09369-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U12490-1 (Contig-U12490-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11162-1 (Contig-U11162-1Q) /CSM_Contig/Conti... 40 0.003

>Contig-U05633-1 (Contig-U05633-1Q) /CSM_Contig/Contig-U05633-1Q.Seq.d
Length = 734

Score = 1078 bits (544), Expect = 0.0
Identities = 547/547 (100%)
Strand = Plus / Plus


Query: 1 ctccaactcaacaaccaattaatacaagtgttaataataataacaatataatacaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccaactcaacaaccaattaatacaagtgttaataataataacaatataatacaacaaa 60


Query: 61 gatcaaattcaatttcttcttcaattaatataccatcatcaattagaagatcatttagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcaaattcaatttcttcttcaattaatataccatcatcaattagaagatcatttagtc 120


Query: 121 attaatataaatggtaatggtaatggtaataatgttggaaatgtgaatggatcgtcatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attaatataaatggtaatggtaatggtaataatgttggaaatgtgaatggatcgtcatct 180


Query: 181 tctttatcaaatactacatcagcctttagtccaaatgttgtatcaaatagttatggaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tctttatcaaatactacatcagcctttagtccaaatgttgtatcaaatagttatggaagt 240


Query: 241 aatggtagcagtggttgtaatagcnttagtagtatgagtagtatgatgatgatgatgagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatggtagcagtggttgtaatagcnttagtagtatgagtagtatgatgatgatgatgagt 300


Query: 301 ggtggtaaccaacaatttttaattggttcaccctctgaaatgataatgcataaactaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtggtaaccaacaatttttaattggttcaccctctgaaatgataatgcataaactaaaa 360


Query: 361 gagattgaaagattaaataaagaagcaattcaaaaagatcaagaattgaatcaagttaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagattgaaagattaaataaagaagcaattcaaaaagatcaagaattgaatcaagttaaa 420


Query: 421 aagattgctgaggctgaaagatcaagattatgtcttttgaaggataaatataaagaagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagattgctgaggctgaaagatcaagattatgtcttttgaaggataaatataaagaagtt 480


Query: 481 cgaaatgaattgattgaaaaagaattagtaaaataatcgttacgaaaatttaactaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgaaatgaattgattgaaaaagaattagtaaaataatcgttacgaaaatttaactaaaac 540


Query: 541 ttttttt 547
|||||||
Sbjct: 541 ttttttt 547


Score = 71.9 bits (36), Expect = 9e-13
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 624 actctccccaccctttttgnacattttataatttataac 662
|||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actctccccaccctttttgnacattttataatttataac 662


Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 699 cataataaaaaatttttgatttttccatc 727
|||||||||||||||||||||||||||||
Sbjct: 699 cataataaaaaatttttgatttttccatc 727


>Contig-U12319-1 (Contig-U12319-1Q) /CSM_Contig/Contig-U12319-1Q.Seq.d
Length = 1367

Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus


Query: 121 attaatataaatggtaatggtaatggtaat 150
|||||||| |||||||||||||||||||||
Sbjct: 1270 attaatattaatggtaatggtaatggtaat 1299


Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 130 aatggtaatggtaatggtaat 150
|||||||||||||||||||||
Sbjct: 1285 aatggtaatggtaatggtaat 1305


Score = 32.2 bits (16), Expect = 0.80
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 130 aatggtaatggtaatggtaa 149
||||||||||||||| ||||
Sbjct: 1291 aatggtaatggtaatcgtaa 1310


Score = 30.2 bits (15), Expect = 3.2
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 130 aatggtaatggtaatggta 148
|||||| ||||||||||||
Sbjct: 637 aatggtgatggtaatggta 655


>Contig-U14766-1 (Contig-U14766-1Q) /CSM_Contig/Contig-U14766-1Q.Seq.d
Length = 323

Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 32 taataataataacaatataatacaacaa 59
|||||||||||| |||||||||||||||
Sbjct: 47 taataataataataatataatacaacaa 74


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,420
Number of Sequences: 6905
Number of extensions: 30420
Number of successful extensions: 8949
Number of sequences better than 10.0: 859
length of query: 734
length of database: 5,674,871
effective HSP length: 16
effective length of query: 718
effective length of database: 5,564,391
effective search space: 3995232738
effective search space used: 3995232738
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 8. 2
Homology vs DNA
Query= Contig-U05633-1 (Contig-U05633-1Q) /CSM_Contig/Contig-U05633-1Q.Seq.d
(734 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AF279134) Dictyostelium discoideum bifunctional glycosyltra... 823 0.0 2
(C91353) Dictyostelium discoideum slug cDNA, clone SSK116. 823 0.0 1
(AU074240) Dictyostelium discoideum slug cDNA, clone SSK116. 230 3e-87 2
(EJ708128) 1092956062265 Global-Ocean-Sampling_GS-30-02-01-1... 48 9e-06 2
(EJ676730) 1092955088713 Global-Ocean-Sampling_GS-30-02-01-1... 48 9e-06 2
(AM633016) Entamoeba dispar GSS, clone dispar97a07.q1k. 52 0.004 2
(AM631358) Entamoeba dispar GSS, clone dispar67d09.p1k. 52 0.005 2
(AM633038) Entamoeba dispar GSS, clone dispar97c05.q1k. 52 0.005 2
(AC202141) Zea mays chromosome 5 clone ZMMBBb-464C12; ZMMBBb... 54 0.006 3
(AM624668) Entamoeba dispar GSS, clone dispar111d09.p1k. 52 0.007 2
(BX640579) Zebrafish DNA sequence from clone CH211-266K5 in ... 54 0.008 1
(AM635203) Entamoeba dispar GSS, clone dispar132c05.q1k. 50 0.013 2
(DQ480085) Entamoeba dispar putative BspA-like leucine-rich ... 52 0.013 2
(AM642112) Entamoeba dispar GSS, clone dispar91e09.q1k. 50 0.015 2
(AM630430) Entamoeba dispar GSS, clone dispar55e12.q1k. 50 0.023 2
(AM640542) Entamoeba dispar GSS, clone dispar75e04.p1k. 50 0.024 2
(AM624994) Entamoeba dispar GSS, clone dispar114d09.q1k. 50 0.024 2
(AM627161) Entamoeba dispar GSS, clone dispar1d08.q1k. 50 0.026 2
(BH147012) ENTPS52TF Entamoeba histolytica Sheared DNA Entam... 52 0.031 1
(AM642340) Entamoeba dispar GSS, clone dispar92h01.q1k. 52 0.031 1
(AM641487) Entamoeba dispar GSS, clone dispar82h01.q1k. 52 0.031 1
(AM636941) Entamoeba dispar GSS, clone dispar42b03.q1k. 52 0.031 1
(AM631951) Entamoeba dispar GSS, clone dispar77h09.p1k. 52 0.031 1
(AM628205) Entamoeba dispar GSS, clone dispar27e11.q1k. 52 0.031 1
(AM627614) Entamoeba dispar GSS, clone dispar23f11.p1k. 52 0.031 1
(AM624037) Entamoeba dispar GSS, clone dispar106b03.p1k. 52 0.031 1
(EH649658) OFM-P2-E11 Adult Oncopeltus fasciatus salivary gl... 52 0.031 1
(BJ445732) Dictyostelium discoideum cDNA clone:ddv60p07, 3' ... 52 0.031 1
(BJ434257) Dictyostelium discoideum cDNA clone:ddv16h07, 3' ... 52 0.031 1
(AJ012088) Dictyostelium discoideum mRNA for microtubule-ass... 50 0.042 2
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 48 0.054 3
(EX163665) LY_YIT_DP1785 Dermatophagoides pteronyssinus cDNA... 40 0.068 2
(CR450715) Zebrafish DNA sequence from clone CH211-157F15 in... 50 0.12 1
(BV728001) ha1752 Helianthus annuus Ha89 Tsp509I genomic fra... 50 0.12 1
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 50 0.12 1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 50 0.12 1
(BH166278) ENTSW19TF Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH166228) ENTQX57TF Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH164053) ENTRW27TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH157557) ENTTG50TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH157082) ENTRQ45TF Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH138757) ENTOU43TF Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH137653) ENTNA77TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH133831) ENTOC05TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH131894) ENTOF03TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH131276) ENTOZ76TF Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(BH130645) ENTNH01TF Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(AZ682367) ENTLP09TF Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(AZ679397) ENTKJ48TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(AZ676477) ENTMH30TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(AZ671242) ENTHJ16TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(AZ546977) ENTDS37TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(AZ542822) ENTEJ66TF Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(AZ542578) ENTCU09TR Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(AZ532190) ENTBW24TF Entamoeba histolytica Sheared DNA Entam... 50 0.12 1
(ER369059) 1093022162901 Global-Ocean-Sampling_GS-34-01-01-1... 50 0.12 1
(ER368884) 1093022158869 Global-Ocean-Sampling_GS-34-01-01-1... 50 0.12 1
(AM643362) Entamoeba dispar GSS, clone dispar15g10.p1k. 50 0.12 1
(AM643155) Entamoeba dispar GSS, clone dispar104d07.q1k. 50 0.12 1
(AM642339) Entamoeba dispar GSS, clone dispar92h01.p1k. 50 0.12 1
(AM639710) Entamoeba dispar GSS, clone dispar68e01.q1k. 50 0.12 1
(AM638437) Entamoeba dispar GSS, clone dispar52d05.p1k. 50 0.12 1
(AM636740) Entamoeba dispar GSS, clone dispar40g08.q1k. 50 0.12 1
(AM636731) Entamoeba dispar GSS, clone dispar40g03.p1k. 50 0.12 1
(AM634645) Entamoeba dispar GSS, clone dispar126d06.p1k. 50 0.12 1
(AM633763) Entamoeba dispar GSS, clone dispar108c11.p1k. 50 0.12 1
(AM633571) Entamoeba dispar GSS, clone dispar103d01.p1k. 50 0.12 1
(AM631352) Entamoeba dispar GSS, clone dispar67c08.p1k. 50 0.12 1
(AM629841) Entamoeba dispar GSS, clone dispar43g03.p1k. 50 0.12 1
(AM627229) Entamoeba dispar GSS, clone dispar1g08.q1k. 50 0.12 1
(AM626411) Entamoeba dispar GSS, clone dispar128e01.q1k. 50 0.12 1
(AM625274) Entamoeba dispar GSS, clone dispar116d02.q1k. 50 0.12 1
(AM623779) Entamoeba dispar GSS, clone dispar103c11.q1k. 50 0.12 1
(EJ577263) 1092960119230 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.12 1
(EJ516209) 1092955094487 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.12 1
(BW500723) Ciona intestinalis cDNA, clone:cima054c06, 3'end,... 50 0.12 1
(BW496433) Ciona intestinalis cDNA, clone:cima041c02, 3'end,... 50 0.12 1
(FK188941) XABT204011.g1 Gateway compatible cien cDNA librar... 50 0.12 1
(FF919425) CBWU60827.g1 Yutaka Satou unpublished cDNA librar... 50 0.12 1
(FF732114) XABT46334.rev Gateway compatible cien cDNA librar... 50 0.12 1
(EW965375) BRHL_03_O01_T7 Headlice composite library with al... 50 0.12 1
(DY889602) CeleSEQ11532 Cunninghamella elegans pBluescript (... 40 0.14 3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 32 0.15 9
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 0.23 6
(FD917521) CBOX19825.rev CBOX Volvox carteri f. nagariensis ... 38 0.30 2
(FD917522) CBOX19825.fwd CBOX Volvox carteri f. nagariensis ... 38 0.31 2
(CA755115) BR030013000_PLATE_E01_5_005.ab1 OA Oryza sativa J... 40 0.40 2
(EV275119) GLMCE17TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 40 0.40 3
(AY392153) Schistosoma bovis nicotinic acetylcholine recepto... 48 0.49 1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 48 0.49 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 48 0.49 1
(AC201318) Strongylocentrotus purpuratus clone R3-16K6, WORK... 48 0.49 1
(AC201298) Strongylocentrotus purpuratus clone R3-16H4, WORK... 48 0.49 1
(AC181734) Strongylocentrotus purpuratus clone R3-1037P09, W... 48 0.49 1
(AC178858) Strongylocentrotus purpuratus clone R3-26I8, WORK... 48 0.49 1
(AC178423) Strongylocentrotus purpuratus clone R3-3113J1, WO... 48 0.49 1
(AC176999) Strongylocentrotus purpuratus clone R3-1039A24, W... 48 0.49 1
(AC175972) Strongylocentrotus purpuratus clone R3-17G03, WOR... 48 0.49 1
(BH163864) ENTTI46TR Entamoeba histolytica Sheared DNA Entam... 48 0.49 1
(BH147340) ENTQM34TR Entamoeba histolytica Sheared DNA Entam... 48 0.49 1
(BH137539) ENTNA83TR Entamoeba histolytica Sheared DNA Entam... 48 0.49 1
(BH136978) ENTOH79TR Entamoeba histolytica Sheared DNA Entam... 48 0.49 1
(AZ670645) ENTLJ94TR Entamoeba histolytica Sheared DNA Entam... 48 0.49 1
(AM642372) Entamoeba dispar GSS, clone dispar93b03.q1k. 48 0.49 1
(AM641868) Entamoeba dispar GSS, clone dispar90a07.p1k. 48 0.49 1
(AM638825) Entamoeba dispar GSS, clone dispar58d05.q1k. 48 0.49 1
(AM635984) Entamoeba dispar GSS, clone dispar22f10.p1k. 48 0.49 1
(AM634861) Entamoeba dispar GSS, clone dispar128h07.p1k. 48 0.49 1
(AM634589) Entamoeba dispar GSS, clone dispar125h04.p1k. 48 0.49 1
(AM628541) Entamoeba dispar GSS, clone dispar29g10.p1k. 48 0.49 1
(AU271406) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 48 0.49 1
(AU271405) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 48 0.49 1
(AU271404) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 48 0.49 1
(EX821582) CBNA7652.rev CBNA Phycomyces blakesleeanus NRRL15... 48 0.49 1
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 42 0.52 3
(BF071599) st18g09.y1 Gm-c1065 Glycine max cDNA clone GENOME... 44 0.63 2
(AC151815) Solanum demissum chromosome 5 clone PGEC472P22, c... 44 0.65 4
(AC139344) Medicago truncatula clone mth2-34b22, complete se... 44 0.66 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.72 8
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 0.73 8
(AC196429) Zea mays chromosome 4 clone CH201-150D14; ZMMBBc0... 46 0.80 3
(AC180903) Strongylocentrotus purpuratus clone R3-3064H01, W... 40 0.84 4
(EX829065) CBNB1597.fwd CBNB Phycomyces blakesleeanus NRRL15... 42 0.89 2
(DB892832) Populus nigra mRNA, clone: PnFL2-103_B24, 5'end. 42 0.92 2
(EH741537) CNMS15763.b1_E05.ab1 CNM(LMS) spotted knapweed Ce... 38 0.95 2
(AM628754) Entamoeba dispar GSS, clone dispar30b06.p1k. 44 0.98 2
(ER599089) 1093016235084 Global-Ocean-Sampling_GS-36-01-01-2... 40 1.0 2
(AC201553) Strongylocentrotus purpuratus clone R3-3116L3, WO... 44 1.0 3
(AM639277) Entamoeba dispar GSS, clone dispar61b07.q1k. 44 1.0 2
(EX829064) CBNB1597.rev CBNB Phycomyces blakesleeanus NRRL15... 42 1.1 2
(ER410621) 1095368030620 Global-Ocean-Sampling_GS-34-01-01-1... 44 1.1 2
(EJ170038) 1092344080157 Global-Ocean-Sampling_GS-27-01-01-1... 40 1.2 2
(AM641457) Entamoeba dispar GSS, clone dispar82f07.p1k. 44 1.2 2
(EJ556795) 1092959508448 Global-Ocean-Sampling_GS-29-01-01-1... 44 1.3 2
(AM625045) Entamoeba dispar GSS, clone dispar114g05.q1k. 44 1.3 2
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 44 1.3 11
(AC160031) Mus musculus 10 BAC RP24-395H7 (Roswell Park Canc... 46 1.5 4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 44 1.5 7
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 42 1.6 2
(AC177612) Strongylocentrotus purpuratus clone R3-1023I4, WO... 40 1.9 3
(FJ789656) Brassica rapa subsp. pekinensis, pooled multiple ... 46 1.9 1
(CU695281) Brassica rapa subsp. pekinensis clone KBrB129C20,... 46 1.9 1
(AC201116) Strongylocentrotus purpuratus clone R3-13N1, WORK... 46 1.9 1
(AC199918) Zea mays chromosome 8 clone CH201-52C14; ZMMBBc00... 46 1.9 1
(AC190508) Zea mays chromosome 2 clone CH201-43I1; ZMMBBc004... 46 1.9 1
(AC186531) Zea mays chromosome 4 clone CH201-146A8; ZMMBBc01... 46 1.9 1
(AC185521) Zea mays chromosome 4 clone CH201-118J13; ZMMBBc0... 46 1.9 1
(AC185304) Zea mays chromosome 5 clone CH201-399A2; ZMMBBc03... 46 1.9 1
(AC184580) Strongylocentrotus purpuratus clone R3-3056O7, WO... 46 1.9 1
(AC180936) Strongylocentrotus purpuratus clone R3-3061J19, W... 46 1.9 1
(AC180427) Strongylocentrotus purpuratus clone R3-3103H10, W... 46 1.9 1
(AC178781) Strongylocentrotus purpuratus clone R3-21F03, WOR... 46 1.9 1
(AM660258) Entamoeba moshkovskii FIC GSS, clone mosh097f01.q1k. 46 1.9 1
(AM654073) Entamoeba moshkovskii FIC GSS, clone mosh009b04.p1k. 46 1.9 1
(AM637859) Entamoeba dispar GSS, clone dispar48d06.p1k. 46 1.9 1
(EI889156) CAH1-60K4TR CAA1Ba Cicer arietinum genomic clone ... 46 1.9 1
(EI889148) CAH1-60I10TR CAA1Ba Cicer arietinum genomic clone... 46 1.9 1
(EI390687) POTCK75TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 1.9 1
(CL173743) 104_377_10891087_116_31793_223 Sorghum methylatio... 46 1.9 1
(CL142906) ISB1-120P24_Sp6.1 ISB1 Xenopus (Silurana) tropica... 46 1.9 1
(CG174569) PUJDF74TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 1.9 1
(CC420032) PUHQF14TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 1.9 1
(EC770709) EST 7205 Guarana fruits cDNA library Paullinia cu... 46 1.9 1
(DY238435) ZM_BFb0256E16.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.9 1
(DN564657) 90838967 Sea Urchin primary mesenchyme cell cDNA ... 46 1.9 1
(CN845958) PG07006A08 Ginseng cDNA library from MeJA treated... 46 1.9 1
(BJ335675) Dictyostelium discoideum cDNA clone:dda51l04, 5' ... 46 1.9 1
(BJ333944) Dictyostelium discoideum cDNA clone:dda44g18, 5' ... 46 1.9 1
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 38 2.0 12
(AF057019) Dictyostelium discoideum interaptin (abpD) gene, ... 38 2.3 3
(AC176318) Strongylocentrotus purpuratus clone R3-3054G14, W... 42 2.7 2
(AC184356) Strongylocentrotus purpuratus clone R3-3116G17, W... 36 2.7 4
(AC109422) Rattus norvegicus clone CH230-61J19, WORKING DRAF... 44 2.8 4
(AC178904) Strongylocentrotus purpuratus clone R3-1112F3, WO... 42 2.9 2
(AC180467) Strongylocentrotus purpuratus clone R3-3102I10, W... 40 2.9 2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 42 3.1 13
(AC200931) Strongylocentrotus purpuratus clone R3-1021N13, W... 44 3.2 2
(BI767092) 603054142F1 NIH_MGC_122 Homo sapiens cDNA clone I... 38 3.3 2
(DW544403) EST_ssal_rgb2_8822 rgb2 Salmo salar cDNA clone ss... 38 3.3 2
(CA169881) SCQGSB1079G04.g SB1 Saccharum officinarum cDNA cl... 36 3.4 2
(AC154299) Mus musculus BAC clone RP23-402I16 from chromosom... 44 3.5 2
(AC205673) Zea mays chromosome 2 clone CH201-232F12; ZMMBBc0... 38 3.6 3
(AP010305) Lotus japonicus genomic DNA, chromosome 6, clone:... 38 3.7 4
(AC177709) Strongylocentrotus purpuratus clone R3-1011F19, W... 42 3.7 3
(AC176233) Strongylocentrotus purpuratus clone R3-3005E14, W... 32 3.7 2
(AC168340) Strongylocentrotus purpuratus clone R3-58F3, WORK... 32 3.8 2
(AC201457) Strongylocentrotus purpuratus clone R3-3037H20, W... 32 3.8 2
(AM635069) Entamoeba dispar GSS, clone dispar131d12.p1k. 42 3.8 2
(AC181167) Strongylocentrotus purpuratus clone R3-15N15, WOR... 32 3.8 2
(AC181730) Strongylocentrotus purpuratus clone R3-1038D20, W... 32 3.8 2
(AC176952) Strongylocentrotus purpuratus clone R3-34E14, WOR... 32 3.8 2
(BJ442006) Dictyostelium discoideum cDNA clone:ddv48e14, 3' ... 38 3.8 2
(AC179240) Strongylocentrotus purpuratus clone R3-42C23, WOR... 32 3.8 2
(EY313680) CAWX25091.fwd CAWX Helobdella robusta Primary Ear... 36 3.8 2
(AC177398) Strongylocentrotus purpuratus clone R3-1031H15, W... 34 3.9 2
(AC181445) Strongylocentrotus purpuratus clone R3-50N24, WOR... 32 3.9 2
(AP009238) Lotus japonicus genomic DNA, clone: LjT10F22, TM1... 32 3.9 2
(AC181956) Strongylocentrotus purpuratus clone R3-1004N13, W... 32 3.9 2
(AC172306) Strongylocentrotus purpuratus clone R3-1004M22, W... 32 3.9 2
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 44 4.0 8
(AC201029) Strongylocentrotus purpuratus clone R3-12I4, WORK... 32 4.1 2
(AC215631) Populus trichocarpa clone POP063-B01, complete se... 38 4.2 5
(EH728950) CNMM15407.b1_M11.ab1 CNM(LMS) spotted knapweed Ce... 40 4.3 2
(CW629117) OP__Ba0054H20.f OP__Ba Oryza punctata genomic clo... 36 4.6 2
(EY312790) CAWX24590.fwd CAWX Helobdella robusta Primary Ear... 36 4.7 2
(AZ689339) ENTHF58TR Entamoeba histolytica Sheared DNA Entam... 42 4.8 2
(AC211029) Solanum lycopersicum chromosome 6 clone C06HBa003... 44 4.9 3
(CF924645) DD002F01.ab1 Codonopsis lanceolata cDNA library C... 42 4.9 2
(EY351636) CAWZ18222.fwd CAWZ Helobdella robusta Primary Lat... 36 4.9 2
(AC178694) Strongylocentrotus purpuratus clone R3-12G17, WOR... 42 5.0 3
(AC189552) Brassica rapa subsp. pekinensis clone KBrH005P10,... 42 5.5 4
(AB236336) Clostridium perfringens F4969 plasmid pCPF4969 DN... 38 5.6 5
(AM447622) Vitis vinifera contig VV78X102578.8, whole genome... 36 5.7 4
(AR551704) Sequence 6835 from patent US 6747137. 42 5.9 2
(AC171130) Helobdella robusta clone CH306-1A12, complete seq... 38 6.1 2
(AM448063) Vitis vinifera, whole genome shotgun sequence, co... 36 6.2 3
(AR556106) Sequence 11237 from patent US 6747137. 42 6.4 2
(AM483546) Vitis vinifera, whole genome shotgun sequence, co... 36 6.7 4
(AC174235) Strongylocentrotus purpuratus clone R3-1036D3, WO... 38 7.1 5
(CT009697) Mouse DNA sequence from clone RP23-131H5 on chrom... 44 7.2 4
(CU074309) Zebrafish DNA sequence from clone CH211-81L19 in ... 44 7.7 1
(CT033796) Zebrafish DNA sequence from clone CH73-95A24 in l... 44 7.7 1
(CR848709) Zebrafish DNA sequence from clone CH211-276A23 in... 44 7.7 1
(CR382339) Zebrafish DNA sequence from clone CH211-129E5 in ... 44 7.7 1
(CR354556) Zebrafish DNA sequence from clone DKEY-100J22 in ... 44 7.7 1
(BX855587) Zebrafish DNA sequence from clone DKEY-103L5 in l... 44 7.7 1
(BX276090) Zebrafish DNA sequence from clone RP71-39F17 in l... 44 7.7 1
(BX119981) Zebrafish DNA sequence from clone RP71-31M18 in l... 44 7.7 1
(BC077561) Xenopus laevis MGC83526 protein, mRNA (cDNA clone... 44 7.7 1
(AL954130) Zebrafish DNA sequence from clone CH211-214D1 in ... 44 7.7 1
(AL929131) Zebrafish DNA sequence from clone CH211-286O17. 44 7.7 1
(AU047968) Rattus norvegicus, OTSUKA clone, 398d05, microsat... 44 7.7 1
(AC159542) Mus musculus 10 BAC RP23-137B10 (Roswell Park Can... 44 7.7 1
(AC153506) Mus musculus 10 BAC RP23-99K2 (Roswell Park Cance... 44 7.7 1
(AC102374) Mus musculus chromosome 1, clone RP23-278G2, comp... 44 7.7 1
(AC101691) Mus musculus chromosome 19, clone RP23-220B4, com... 44 7.7 1
(AC099591) Mus musculus chromosome 19, clone RP23-401D18, co... 44 7.7 1
(AC186178) Pan troglodytes BAC clone CH251-692L14 from chrom... 44 7.7 1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ... 44 7.7 1
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ... 44 7.7 1
(AM452726) Vitis vinifera, whole genome shotgun sequence, co... 44 7.7 1
(AC235337) Glycine max strain Williams 82 clone GM_WBb0084I1... 44 7.7 1
(DD435235) Fusion expression vector. 44 7.7 1
(DD435234) Fusion expression vector. 44 7.7 1
(DD435233) Fusion expression vector. 44 7.7 1
(AC104642) Trypanosoma brucei chromosome 3 clone RPCI93-27C5... 44 7.7 1
(AB247368) Plasmodium yoelii pyctrp gene for circumsporozoit... 44 7.7 1
(AC226166) Homo sapiens FOSMID clone ABC10-44510600N16 from ... 44 7.7 1
(AC208597) Homo sapiens FOSMID clone ABC9-44020200I8 from ch... 44 7.7 1
(AC134943) Homo sapiens 3 BAC RP11-101C21 (Roswell Park Canc... 44 7.7 1
(AC122108) Homo sapiens chromosome 15 clone CTD-2008A1 map 1... 44 7.7 1
(AC120778) Homo sapiens chromosome 15 clone CTD-2163N2 map 1... 44 7.7 1
(AC104187) Homo sapiens chromosome 3 clone RP11-424N24, comp... 44 7.7 1
(AC091245) Homo sapiens chromosome 15 clone RP11-456H13 map ... 44 7.7 1
(AC091117) Homo sapiens chromosome 15 clone RP11-109D20 map ... 44 7.7 1
(AC087828) Homo sapiens chromosome 15, clone RP11-292P13, co... 44 7.7 1
(AC018901) Homo sapiens chromosome 15 clone RP11-292P13 map ... 44 7.7 1
(AC152916) Zea mays chromosome 2 clone Z377J20 map 2S, *** S... 44 7.7 1
(AC144405) Medicago truncatula clone mth2-16m18, WORKING DRA... 44 7.7 1
(AC141770) Apis mellifera clone CH224-63A9, WORKING DRAFT SE... 44 7.7 1
(AC118390) Rattus norvegicus clone CH230-90A6, WORKING DRAFT... 44 7.7 1
(AC108574) Rattus norvegicus clone CH230-175C23, WORKING DRA... 44 7.7 1
(AC098015) Rattus norvegicus clone CH230-107H3, WORKING DRAF... 44 7.7 1
(AC097996) Rattus norvegicus clone CH230-58J16, *** SEQUENCI... 44 7.7 1
(FP102672) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.7 1
(AC072032) Homo sapiens chromosome 3 clone RP11-302D8, WORKI... 44 7.7 1
(CT943660) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.7 1
(AP009108) Marchantia polymorpha genomic DNA, chromosome Y, ... 44 7.7 1
(AP009102) Marchantia polymorpha genomic DNA, chromosome Y, ... 44 7.7 1
(AP009095) Marchantia polymorpha genomic DNA, chromosome Y, ... 44 7.7 1
(AC233669) Medicago truncatula, pooled multiple clones, *** ... 44 7.7 1
(AC216665) Solanum lycopersicum chromosome 6 clone C06SLm012... 44 7.7 1
(AC204299) Zea mays chromosome 2 clone CH201-308G1; ZMMBBc03... 44 7.7 1
(AC194611) Zea mays chromosome 2 clone CH201-111J7; ZMMBBc01... 44 7.7 1
(AC194414) Zea mays chromosome 3 clone CH201-179L11; ZMMBBc0... 44 7.7 1
(AC185466) Zea mays chromosome 4 clone CH201-273N2; ZMMBBc02... 44 7.7 1
(AC184604) Strongylocentrotus purpuratus clone R3-3037K6, WO... 44 7.7 1
(AC184377) Strongylocentrotus purpuratus clone R3-3107C5, WO... 44 7.7 1
(AC183306) Zea mays chromosome 2 clone ZMMBBb-629A16; ZMMBBb... 44 7.7 1
(AC182725) Petromyzon marinus chromosome UNK clone CH303-4_3... 44 7.7 1
(AC181424) Strongylocentrotus purpuratus clone R3-50F13, WOR... 44 7.7 1
(AC181145) Strongylocentrotus purpuratus clone R3-3037J19, W... 44 7.7 1
(AC180839) Strongylocentrotus purpuratus clone R3-3069O18, W... 44 7.7 1
(AC180634) Strongylocentrotus purpuratus clone R3-3090K14, W... 44 7.7 1
(AC179877) Strongylocentrotus purpuratus clone R3-1006N10, W... 44 7.7 1
(AC179628) Strongylocentrotus purpuratus clone R3-1025N13, W... 44 7.7 1
(AC178731) Strongylocentrotus purpuratus clone R3-3002M6, WO... 44 7.7 1
(AC178406) Strongylocentrotus purpuratus clone R3-3112D20, W... 44 7.7 1
(AC177930) Zea mays chromosome 2 clone CH201-11K11; ZMMBBc00... 44 7.7 1
(AC177754) Strongylocentrotus purpuratus clone R3-1006A24, W... 44 7.7 1
(AC177272) Strongylocentrotus purpuratus clone R3-44A7, WORK... 44 7.7 1
(AC175721) Bos taurus clone CH240-381D22, WORKING DRAFT SEQU... 44 7.7 1
(AC168773) Strongylocentrotus purpuratus clone R3-13N18, WOR... 44 7.7 1
(AZ671982) ENTMP39TR Entamoeba histolytica Sheared DNA Entam... 44 7.7 1
(FH959271) CHO_OF6770xo06r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 7.7 1
(FH430264) CHO_OF4925xl21f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 7.7 1
(EK380303) 1095469459493 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.7 1
(EJ989142) 1093023033462 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.7 1
(EJ845932) 1093017855725 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.7 1
(EJ838163) 1093017814584 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.7 1
(AM654418) Entamoeba moshkovskii FIC GSS, clone mosh013a10.q1k. 44 7.7 1
(AM653780) Entamoeba moshkovskii FIC GSS, clone mosh005a08.q1k. 44 7.7 1
(AM653034) Entamoeba moshkovskii FIC GSS, clone mosh125c09.p1k. 44 7.7 1
(AM644004) Entamoeba moshkovskii FIC GSS, clone mosh005a08.p1k. 44 7.7 1
(AM642791) Entamoeba dispar GSS, clone dispar98h10.p1k. 44 7.7 1
(AM635553) Entamoeba dispar GSS, clone dispar15c04.q1k. 44 7.7 1
(AM628478) Entamoeba dispar GSS, clone dispar29d09.q1k. 44 7.7 1
(EJ535877) 1092955259084 Global-Ocean-Sampling_GS-29-01-01-1... 44 7.7 1
(EJ454859) 1093017362434 Global-Ocean-Sampling_GS-28-01-01-1... 44 7.7 1
(EJ347256) 1092963556671 Global-Ocean-Sampling_GS-28-01-01-1... 44 7.7 1
(EJ022374) 1095452000139 Global-Ocean-Sampling_GS-26-01-01-1... 44 7.7 1
(ED799464) MG__Ba0057O16f MG__Ba Mimulus guttatus genomic, g... 44 7.7 1
(DX824995) ZMMBLb0002I02.r ZMMBLb Zea mays genomic clone ZMM... 44 7.7 1
(AL441461) T7 end of clone XBD0AA002B10 of library XBD0AA fr... 44 7.7 1
(AL346384) Tetraodon nigroviridis genome survey sequence T3 ... 44 7.7 1
(DE024269) Branchiostoma floridae DNA, clone: CH302-038L10.R... 44 7.7 1
(CW673015) OP__Ba0054N10.r OP__Ba Oryza punctata genomic clo... 44 7.7 1
(CW351606) fsbb001f013h02f0 Sorghum methylation filtered lib... 44 7.7 1
(CW115067) 104_490_11106340_116_34591_014 Sorghum methylatio... 44 7.7 1
(CL428843) ZMMBBb0445K22f ZMMBBb (HindIII) Zea mays subsp. m... 44 7.7 1
(CL250463) ZMMBBb0599C04f ZMMBBb (HindIII) Zea mays subsp. m... 44 7.7 1
(CC758930) ZMMBBb0146G09.r ZMMBBb Zea mays subsp. mays genom... 44 7.7 1
(BZ971706) PUDFI35TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 7.7 1
(BZ823221) PUGAD69TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 7.7 1
(BZ668819) PUBAU36TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 7.7 1
(EH012360) USDA-FP_185268 Lysiphlebus testaceipes adult whol... 44 7.7 1
(EG977073) GLL042_B08_031 Cyamopsis tetragonoloba (L.) Taub ... 44 7.7 1
(EG975768) GLL02_E01_004 Cyamopsis tetragonoloba (L.) Taub s... 44 7.7 1
(EE621986) CHWM9055.b1_M08.ab1 CHW(LMS) silverleaf sunflower... 44 7.7 1
(EE621829) CHWM8912.b1_O19.ab1 CHW(LMS) silverleaf sunflower... 44 7.7 1
(EE617913) CHWM5269.b1_I22.ab1 CHW(LMS) silverleaf sunflower... 44 7.7 1
(EE613678) CHWM1099.b1_F12.ab1 CHW(LMS) silverleaf sunflower... 44 7.7 1
(EE255317) RFAA713TH Castor bean cDNA library from flowers,8... 44 7.7 1
(DY942276) CHPY10119.b1_N09.ab1 CHP(XYZ) plains sunflower He... 44 7.7 1
(DY933180) CHPX11455.b1_N08.ab1 CHP(XYZ) plains sunflower He... 44 7.7 1
(DY895363) CeleSEQ15178 Cunninghamella elegans pBluescript (... 44 7.7 1
(DY894885) CeleSEQ14569 Cunninghamella elegans pBluescript (... 44 7.7 1
(DW981127) MSAM313079_3781_0024 LCM-dissected maize shoot ap... 44 7.7 1
(DW935267) MSAM201375_3783_0026 LCM-dissected maize shoot ap... 44 7.7 1
(DT758662) EST1192511 Aquilegia cDNA library Aquilegia formo... 44 7.7 1
(DR951116) EST1142655 Aquilegia cDNA library Aquilegia formo... 44 7.7 1
(DR914732) EST1106271 Aquilegia cDNA library Aquilegia formo... 44 7.7 1
(DC131493) Xenopus laevis NBRP cDNA clone:xl328c19, 5' end. 44 7.7 1
(DC131456) Xenopus laevis NBRP cDNA clone:xl328a19, 5' end. 44 7.7 1
(CX549534) MHAM13C_D11_T3_090.seq MHAM2 Medicago truncatula/... 44 7.7 1
(CX535362) s13dNF85C04MJ034_388893 Methyl Jasmonate-Elicited... 44 7.7 1
(CT784077) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 7.7 1
(CT656336) Danio rerio EST, clone ZF_mu_142n14 3'. 44 7.7 1
(CT656335) Danio rerio EST, clone ZF_mu_142n14 5'. 44 7.7 1
(CO906705) BJ02006B03 BJ02 Capsicum annuum cDNA 5', mRNA seq... 44 7.7 1
(AL924148) Danio rerio EST sequence, clone 135-F04-2. 44 7.7 1
(CN531658) UI-M-HQ0-cpn-j-02-0-UI.r1 NIH_BMAP_HQ0 Mus muscul... 44 7.7 1
(CN152434) WOUND1_82_B09.b1_A002 Wounded leaves Sorghum bico... 44 7.7 1
(CN149679) WOUND1_64_F06.b1_A002 Wounded leaves Sorghum bico... 44 7.7 1
(CN148561) WOUND1_57_H05.b1_A002 Wounded leaves Sorghum bico... 44 7.7 1
(CN145809) WOUND1_35_H12.b1_A002 Wounded leaves Sorghum bico... 44 7.7 1
(CN140130) OX1_34_F05.b1_A002 Oxidatively-stressed leaves an... 44 7.7 1
(CN131736) OX1_2_B03.b1_A002 Oxidatively-stressed leaves and... 44 7.7 1
(CF770262) DSBF1_6_E06.g1_A010 Drought-stressed before flowe... 44 7.7 1
(CF770186) DSBF1_6_E06.b1_A010 Drought-stressed before flowe... 44 7.7 1
(CF483148) POL1_12_C11.b1_A002 Pollen Sorghum bicolor cDNA c... 44 7.7 1
(CF430066) PH1_26_C01.b1_A002 Phosphorous-deficient seedling... 44 7.7 1
(CF427699) PH1_10_C07.b1_A002 Phosphorous-deficient seedling... 44 7.7 1
(CF427036) PH1_3_D10.b1_A002 Phosphorous-deficient seedlings... 44 7.7 1
(CD463405) ETH1_44_H02.b1_A002 Ethylene-treated seedlings So... 44 7.7 1
(CD428355) ETH1_31_H01.b1_A002 Ethylene-treated seedlings So... 44 7.7 1
(CD227665) CCC1_53_A04.b1_A007 Callus culture/cell suspensio... 44 7.7 1
(CD222106) CCC1_2_C08.b1_A007 Callus culture/cell suspension... 44 7.7 1
(CD220268) CCC1_66_F01.b1_A007 Callus culture/cell suspensio... 44 7.7 1
(CD219648) CCC1_58_H02.b1_A007 Callus culture/cell suspensio... 44 7.7 1
(CD219533) CCC1_57_C05.b1_A007 Callus culture/cell suspensio... 44 7.7 1
(CD212427) HS1_5_E01.b1_A012 Heat-shocked seedlings Sorghum ... 44 7.7 1
(CD205906) HS1_19_C05.b1_A012 Heat-shocked seedlings Sorghum... 44 7.7 1
(CD205888) HS1_19_E08.b1_A012 Heat-shocked seedlings Sorghum... 44 7.7 1
(CB927621) ABA1_27_B10.b1_A012 Abscisic acid-treated seedlin... 44 7.7 1
(BW652158) Glycine max cDNA clone: GMFL01-03-M13, 5'end. 44 7.7 1
(BM318753) PI1_15_B08.g1_A002 Pathogen induced 1 (PI1) Sorgh... 44 7.7 1
(BM318576) PI1_15_B08.b9_A002 Pathogen induced 1 (PI1) Sorgh... 44 7.7 1
(BM180577) daj37a08.x1 NICHD_XGC_OO1 Xenopus laevis cDNA clo... 44 7.7 1
(BM027318) GIT0000656 Root-induced cDNA library from Glomus ... 44 7.7 1
(BJ427410) Dictyostelium discoideum cDNA clone:ddv62h09, 5' ... 44 7.7 1
(BJ425946) Dictyostelium discoideum cDNA clone:ddv57i16, 5' ... 44 7.7 1
(BJ422406) Dictyostelium discoideum cDNA clone:ddv45f24, 5' ... 44 7.7 1
(BJ421015) Dictyostelium discoideum cDNA clone:ddv41m11, 5' ... 44 7.7 1
(BJ420564) Dictyostelium discoideum cDNA clone:ddv39o15, 5' ... 44 7.7 1
(BJ397637) Dictyostelium discoideum cDNA clone:dds47c06, 5' ... 44 7.7 1
(BJ397562) Dictyostelium discoideum cDNA clone:dds46c20, 5' ... 44 7.7 1
(BJ396255) Dictyostelium discoideum cDNA clone:dds41p23, 5' ... 44 7.7 1
(BJ394330) Dictyostelium discoideum cDNA clone:dds34o16, 5' ... 44 7.7 1
(BJ370951) Dictyostelium discoideum cDNA clone:ddc56g01, 5' ... 44 7.7 1
(BJ370440) Dictyostelium discoideum cDNA clone:ddc54k05, 5' ... 44 7.7 1
(BJ367251) Dictyostelium discoideum cDNA clone:ddc41p21, 5' ... 44 7.7 1
(BJ365310) Dictyostelium discoideum cDNA clone:ddc34l19, 5' ... 44 7.7 1
(BJ365051) Dictyostelium discoideum cDNA clone:ddc33p22, 5' ... 44 7.7 1
(BJ339237) Dictyostelium discoideum cDNA clone:dda64j15, 5' ... 44 7.7 1
(BJ338792) Dictyostelium discoideum cDNA clone:dda63f06, 5' ... 44 7.7 1
(BJ338736) Dictyostelium discoideum cDNA clone:dda62f19, 5' ... 44 7.7 1
(BJ338212) Dictyostelium discoideum cDNA clone:dda60c16, 5' ... 44 7.7 1
(BJ337647) Dictyostelium discoideum cDNA clone:dda58o06, 5' ... 44 7.7 1
(BJ336338) Dictyostelium discoideum cDNA clone:dda53e17, 5' ... 44 7.7 1
(BJ335707) Dictyostelium discoideum cDNA clone:dda51b11, 5' ... 44 7.7 1
(BJ332908) Dictyostelium discoideum cDNA clone:dda40f07, 5' ... 44 7.7 1
(BJ052900) Xenopus laevis cDNA clone:XL043b01, 3' end, singl... 44 7.7 1
(BF790109) 602249363F1 NIH_MGC_81 Homo sapiens cDNA clone IM... 44 7.7 1
(BF648097) NF044C02EC1F1017 Elicited cell culture Medicago t... 44 7.7 1
(BF646377) NF071B12EC1F1096 Elicited cell culture Medicago t... 44 7.7 1
(BE320155) NF025G11RT1F1084 Developing root Medicago truncat... 44 7.7 1
(BE205303) EST397979 KV0 Medicago truncatula cDNA clone pKV0... 44 7.7 1
(GR144393) CCBX23009.g1 CCBX Mimulus guttatus IM62 floral bu... 44 7.7 1
(GR095777) CCIF22736.g1 CCIF Mimulus guttatus IM62 leaves (H... 44 7.7 1
(GR095776) CCIF22736.b1 CCIF Mimulus guttatus IM62 leaves (H... 44 7.7 1
(GR070647) CCIF9011.g1 CCIF Mimulus guttatus IM62 leaves (H)... 44 7.7 1
(GR070646) CCIF9011.b1 CCIF Mimulus guttatus IM62 leaves (H)... 44 7.7 1
(GE497018) CCFS7760.b1_O19.ab1 CCF(STU) sunflower Helianthus... 44 7.7 1
(GE346798) MEUB005TF JCVI-MT2 Medicago truncatula cDNA 5', m... 44 7.7 1
(GD062785) KS14058B10 KS14 Capsicum annuum cDNA, mRNA sequence. 44 7.7 1
(GD062391) KS14054A03 KS14 Capsicum annuum cDNA, mRNA sequence. 44 7.7 1
(FM130745) Rattus norvegicus EST, 5'-end sequence, clone etn... 44 7.7 1
(FF521312) G710P5246RD2.T0 Acorn worm normalized juvenile pE... 44 7.7 1
(AW695641) NF097C06ST1F1049 Developing stem Medicago truncat... 44 7.7 1
(AW690123) NF028F07ST1F1000 Developing stem Medicago truncat... 44 7.7 1
(AW689333) NF018A06ST1F1000 Developing stem Medicago truncat... 44 7.7 1
(EY067661) CATF9952.fwd CATF Artemisia annua, Tanzanian, fro... 44 7.7 1
(EY067660) CATF9952.rev CATF Artemisia annua, Tanzanian, fro... 44 7.7 1
(EY039736) CAIY4848.rev CAIY Artemisia annua leaf Artemisia ... 44 7.7 1
(EX859522) CBNF5029.fwd CBNF Phycomyces blakesleeanus NRRL15... 44 7.7 1
(EX859521) CBNF5029.rev CBNF Phycomyces blakesleeanus NRRL15... 44 7.7 1
(EX851030) CBNC8801.fwd CBNC Phycomyces blakesleeanus NRRL15... 44 7.7 1
(EX845607) CBNC5981.rev CBNC Phycomyces blakesleeanus NRRL15... 44 7.7 1
(EX841616) CBNC10877.rev CBNC Phycomyces blakesleeanus NRRL1... 44 7.7 1
(EX836373) CBNB6361.rev CBNB Phycomyces blakesleeanus NRRL15... 44 7.7 1
(ES775575) gmnbhkas_0012i09.pDNRm13r Gadus morhua head kidne... 44 7.7 1
(CP001037) Nostoc punctiforme PCC 73102, complete genome. 44 7.7 1
(CP000393) Trichodesmium erythraeum IMS101, complete genome. 44 7.7 1
(AY862883) Moraxella catarrhalis strain TTA37 adhesin (hag) ... 44 7.7 1
(CR759888) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 7.8 5
(DQ344521) Caenorhabditis elegans sprint mRNA, complete cds. 36 7.8 2
(AC176052) Strongylocentrotus purpuratus clone R3-18P1, WORK... 40 7.9 3
(AC181446) Strongylocentrotus purpuratus clone R3-1111N22, W... 42 8.3 4
(BX511111) Zebrafish DNA sequence from clone RP71-62I8 in li... 40 8.3 2
(AC023412) Homo sapiens chromosome 1 clone RP11-82K17 map 1,... 36 8.4 3
(AC201075) Strongylocentrotus purpuratus clone R3-13B10, WOR... 36 8.6 4
(AC234386) Monodelphis domestica clone VMRC18-55A20, WORKING... 38 8.7 3
(AC179841) Strongylocentrotus purpuratus clone R3-1007P15, W... 38 8.7 3
(AW423287) sh65e12.y1 Gm-c1015 Glycine max cDNA clone GENOME... 40 8.8 2
(DQ338472) Clostridium perfringens plasmid pF4969, partial s... 38 8.9 3
(BM885944) sam10a11.y1 Gm-c1063 Glycine max cDNA clone SOYBE... 40 9.2 2
(BI497640) sag25c07.y1 Gm-c1080 Glycine max cDNA clone GENOM... 40 9.2 2
(BI316387) saf02f02.y1 Gm-c1065 Glycine max cDNA clone GENOM... 40 9.3 2
(AC179382) Strongylocentrotus purpuratus clone R3-5B03, WORK... 34 9.3 6
(AC183925) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 42 9.4 2
(AW570607) sj64e09.y1 Gm-c1033 Glycine max cDNA clone GENOME... 40 9.6 2
(AW033885) EST277456 tomato callus, TAMU Solanum lycopersicu... 36 9.6 2
(BF596541) su72f09.y1 Gm-c1055 Glycine max cDNA clone GENOME... 40 9.8 2
(AW706616) sj62f01.y1 Gm-c1033 Glycine max cDNA clone GENOME... 40 9.8 2
(AW186188) se64f10.y1 Gm-c1019 Glycine max cDNA clone GENOME... 40 9.8 2
(FC846076) CBHN4046.fwd CBHN Metridium senile tentacle Metri... 34 10.0 2
(AW102131) sd83e12.y1 Gm-c1009 Glycine max cDNA clone GENOME... 40 10.0 2

>(AF279134) Dictyostelium discoideum bifunctional
glycosyltransferase (fucB) gene, complete cds; and
unknown genes.
Length = 3584

Score = 823 bits (415), Expect(2) = 0.0
Identities = 417/418 (99%)
Strand = Plus / Plus


Query: 123 taatataaatggtaatggtaatggtaataatgttggaaatgtgaatggatcgtcatcttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 taatataaatggtaatggtaatggtaataatgttggaaatgtgaatggatcgtcatcttc 473


Query: 183 tttatcaaatactacatcagcctttagtccaaatgttgtatcaaatagttatggaagtaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tttatcaaatactacatcagcctttagtccaaatgttgtatcaaatagttatggaagtaa 533


Query: 243 tggtagcagtggttgtaatagcnttagtagtatgagtagtatgatgatgatgatgagtgg 302
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 534 tggtagcagtggttgtaatagcattagtagtatgagtagtatgatgatgatgatgagtgg 593


Query: 303 tggtaaccaacaatttttaattggttcaccctctgaaatgataatgcataaactaaaaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tggtaaccaacaatttttaattggttcaccctctgaaatgataatgcataaactaaaaga 653


Query: 363 gattgaaagattaaataaagaagcaattcaaaaagatcaagaattgaatcaagttaaaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 gattgaaagattaaataaagaagcaattcaaaaagatcaagaattgaatcaagttaaaaa 713


Query: 423 gattgctgaggctgaaagatcaagattatgtcttttgaaggataaatataaagaagttcg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gattgctgaggctgaaagatcaagattatgtcttttgaaggataaatataaagaagttcg 773


Query: 483 aaatgaattgattgaaaaagaattagtaaaataatcgttacgaaaatttaactaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aaatgaattgattgaaaaagaattagtaaaataatcgttacgaaaatttaactaaaac 831

Score = 125 bits (63), Expect(2) = 0.0
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 60 agatcaaattcaatttcttcttcaattaatataccatcatcaattagaagatcatttagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agatcaaattcaatttcttcttcaattaatataccatcatcaattagaagatcatttagt 408


Query: 120 cat 122
|||
Sbjct: 409 cat 411

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 719,723,489
Number of extensions: 46894471
Number of successful extensions: 5273329
Number of sequences better than 10.0: 461
Length of query: 734
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 710
Effective length of database: 102,084,959,077
Effective search space: 72480320944670
Effective search space used: 72480320944670
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 8. 2
Homology vs Protein
Query= Contig-U05633-1 (Contig-U05633-1Q) /CSM_Contig/Contig-U05633-1Q.Seq.d
(734 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AF279134_1(AF279134|pid:none) Dictyostelium discoideum bifunctio... 140 3e-32
AY176327_73(AY176327|pid:none) Staphylococcus phage K, complete ... 38 0.29
CP001287_1449(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 36 1.1
CP000425_2347(CP000425|pid:none) Lactococcus lactis subsp. cremo... 36 1.1
(Q57850) RecName: Full=Quinolinate synthetase A; EC=2.5... 35 1.9
T30336(T30336) nuclear/mitotic apparatus protein - African clawe... 35 2.4
AM910995_58(AM910995|pid:none) Plasmodium knowlesi strain H chro... 35 2.4
EU974354_1(EU974354|pid:none) Zea mays clone 446920 unknown mRNA. 35 3.2
BT068450_1(BT068450|pid:none) Zea mays full-length cDNA clone ZM... 35 3.2
CP001348_1348(CP001348|pid:none) Clostridium cellulolyticum H10,... 35 3.2
CP000233_1060(CP000233|pid:none) Lactobacillus salivarius UCC118... 35 3.2
EU952119_1(EU952119|pid:none) Zea mays clone 1166698 hypothetica... 35 3.2
AM406671_2493(AM406671|pid:none) Lactococcus lactis subsp. cremo... 35 3.2
AE005176_2247(AE005176|pid:none) Lactococcus lactis subsp. lacti... 34 4.2
CP000612_2416(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 34 4.2
T47237(T47237) myosin II heavy chain [imported] - Naegleria fowl... 33 7.1
CP001130_776(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co... 33 7.1
CP000413_1446(CP000413|pid:none) Lactobacillus gasseri ATCC 3332... 33 9.3
CP000561_787(CP000561|pid:none) Pyrobaculum calidifontis JCM 115... 33 9.3
AF026198_3(AF026198|pid:none) Fugu rubripes neural cell adhesion... 33 9.3
AM260522_269(AM260522|pid:none) Helicobacter acinonychis str. Sh... 33 9.3

>AF279134_1(AF279134|pid:none) Dictyostelium discoideum bifunctional
glycosyltransferase (fucB) gene, complete cds; and
unknown genes.
Length = 268

Score = 140 bits (354), Expect = 3e-32
Identities = 78/107 (72%), Positives = 78/107 (72%)
Frame = +1

Query: 193 TTSAFSPNVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQFLIGSPSEMIMHKLKEIER 372
TTSAFSPNVV QQFLIGSPSEMIMHKLKEIER
Sbjct: 162 TTSAFSPNVVSNSYGSNGSSGCNSISSMSSMMMMMSGGNQQFLIGSPSEMIMHKLKEIER 221

Query: 373 LNKEAIQKDQELNQVKKIAEAERSRLCLLKDKYKEVRNELIEKELVK 513
LNKEAIQKDQELNQVKKIAEAERSRLCLLKDKYKEVRNELIEKELVK
Sbjct: 222 LNKEAIQKDQELNQVKKIAEAERSRLCLLKDKYKEVRNELIEKELVK 268

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 493,630,075
Number of extensions: 4809028
Number of successful extensions: 17272
Number of sequences better than 10.0: 21
Number of HSP's gapped: 17211
Number of HSP's successfully gapped: 21
Length of query: 244
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 119
Effective length of database: 652,629,681
Effective search space: 77662932039
Effective search space used: 77662932039
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.86 gvh: 0.42 alm: 0.51 top: 0.43 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U05633-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0