Contig-U05624-1 |
Contig ID |
Contig-U05624-1 |
Contig update |
2001. 8.30 |
Contig sequence |
|
Gap |
no gap |
Contig length |
420 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
1260227 |
End point |
1259807 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U05624 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2009. 8. 1 |
Homology vs DNA |
Query= Contig-U05624-1 (Contig-U05624-1Q) /CSM_Contig/Contig-U05624-1Q.Seq.d (420 letters)
Database: ddbj_B 105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU074214) Dictyostelium discoideum slug cDNA, clone SSJ823. 232 e-110 3 (Z98748) Human DNA sequence from clone RP3-381E2 on chromoso... 48 0.27 1 (AC009303) Homo sapiens BAC clone RP11-98C1 from 2, complete... 48 0.27 1 (AC011925) Homo sapiens clone RP11-15M20, LOW-PASS SEQUENCE ... 48 0.27 1 (AM180355) Clostridium difficile 630 complete genome. 48 0.27 1 (AC179483) Strongylocentrotus purpuratus clone R3-1035N16, W... 38 0.79 4 (AC149722) Bos taurus clone CH240-244I10, WORKING DRAFT SEQU... 36 1.0 5 (AP009879) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 1.1 1 (BH389750) AG-ND-137I14.TF.1 ND-TAM Anopheles gambiae genomi... 46 1.1 1 (FT045039) Rattus norvegicus DNA, BAC clone: RNB2-065B06, 3'... 46 1.1 1 (EJ483477) 1095403484617 Global-Ocean-Sampling_GS-28-01-01-1... 46 1.1 1 (BH159912) ENTTA05TR Entamoeba histolytica Sheared DNA Entam... 38 1.7 2 (EJ166538) 1092344067712 Global-Ocean-Sampling_GS-27-01-01-1... 40 1.8 2 (CT990547) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.7 4 (AC067801) Homo sapiens chromosome 18, clone RP11-583B12, co... 38 2.8 5 (AC212063) Zea mays chromosome 1 clone ZMMBBb-29B16; ZMMBBb0... 36 3.9 4 (AC024301) Homo sapiens, clone RP11-686O16, complete sequence. 38 4.0 5 (AC153907) Mus musculus BAC RP23-205F6 (Roswell Park Cancer... 40 4.0 5 (AC215315) Pongo abelii BAC clone CH276-289G9 from chromosom... 44 4.3 1 (AP006635) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 4.3 1 (AC214277) Populus trichocarpa clone ACSB1145-L17, complete ... 44 4.3 1 (EA214154) Sequence 78469 from patent US 7214786. 44 4.3 1 (AC150598) Callithrix jacchus clone CH259-172P3, WORKING DRA... 44 4.3 1 (AC122076) Rattus norvegicus clone CH230-277E22, *** SEQUENC... 44 4.3 1 (AC110630) Rattus norvegicus clone CH230-287B12, *** SEQUENC... 44 4.3 1 (AC103514) Rattus norvegicus clone CH230-77D13, WORKING DRAF... 44 4.3 1 (ER630420) 1093018421064 Global-Ocean-Sampling_GS-36-01-01-2... 44 4.3 1 (DX125122) OG_ABa0153G19.f OG_ABa Oryza granulata genomic cl... 44 4.3 1 (DX122820) OG_ABa0150E19.r OG_ABa Oryza granulata genomic cl... 44 4.3 1 (DU345593) 1098313104417 CHORI-243 Ovis aries genomic clone ... 44 4.3 1 (AL407602) T7 end of clone AV0AA003C08 of library AV0AA from... 44 4.3 1 (DH068816) Oryzias latipes Fosmid clone:GOLWFno140_e13, reve... 44 4.3 1 (DH068738) Oryzias latipes Fosmid clone:GOLWFno140_c13, reve... 44 4.3 1 (EL601876) He_pwd_0135E12_M13R Heliconius erato pooled wing ... 44 4.3 1 (EL601262) He_pwd_0220G01_M13R Heliconius erato pooled wing ... 44 4.3 1 (EB328924) CNSN01-F-108702-501 Normalized CNS library (juven... 44 4.3 1 (EB325941) CNSN01-F-104512-501 Normalized CNS library (juven... 44 4.3 1 (EB242068) PEG003-C-218852-501 Normalized Pedal-Pleural Gang... 44 4.3 1 (EB237713) PEG003-C-223275-501 Normalized Pedal-Pleural Gang... 44 4.3 1 (EB234388) PEG003-C-208595-501 Normalized Pedal-Pleural Gang... 44 4.3 1 (DT666676) He_wd2a1_06E09_M13R Heliconius erato wing disk 2 ... 44 4.3 1 (CA485695) WHE4321_H06_O11ZS Wheat meiotic anther cDNA libra... 44 4.3 1 (EY787663) CR05-C3-700-100-A06-CT.F Mandarin fruit, developm... 44 4.3 1 (EY755178) CS12-C1-001-025-A07-CT.F Sweet orange leaf, field... 44 4.3 1 (EY755040) CS12-C1-001-023-C03-CT.F Sweet orange leaf, field... 44 4.3 1 (EY744905) CS00-C5-003-005-G11-CT.F Sweet orange flower, gre... 44 4.3 1 (EY730334) CS00-C3-704-028-G04-CT.F Sweet orange fruit, deve... 44 4.3 1 (EY683287) CS00-C1-650-046-D03-CT.F Sweet orange leaf, young... 44 4.3 1 (DQ241783) Bacillus subtilis isolate DV7-B-4 quorum-sensing ... 44 4.3 1 (AY003901) Bacillus mojavensis RO-H-1 quorum sensing locus, ... 44 4.3 1 (AY003900) Bacillus subtilis strain RS-B-1 quorum sensing lo... 44 4.3 1 (AC196749) Citrus sinensis clone CSRBBa-017B06, WORKING DRAF... 34 4.3 5 (AC116243) Rattus norvegicus clone CH230-248N19, *** SEQUENC... 40 4.5 2 (AL159159) Human DNA sequence from clone RP11-88J11 on chrom... 34 5.0 3 (AC091067) Homo sapiens chromosome 18, clone RP11-702M18, co... 34 6.7 3 (FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 30 6.7 2 (AC159253) Mus musculus BAC clone RP24-110K11 from chromosom... 40 7.5 4 (AC211804) Populus trichocarpa clone POP017-B20, complete se... 32 8.0 2 (BZ696799) SP__Ba0088B18.f SP__Ba Sorghum propinquum genomic... 36 8.6 2 (CT010443) M.truncatula DNA sequence from clone MTH2-76G21 o... 36 9.3 2
>(AU074214) Dictyostelium discoideum slug cDNA, clone SSJ823. Length = 240
Score = 232 bits (117), Expect(3) = e-110 Identities = 117/117 (100%) Strand = Plus / Plus
Query: 25 gaaatgagagaagaagagcaaataagggacttaaaaaatcaatttaatgaagcttcaggc 84 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25 gaaatgagagaagaagagcaaataagggacttaaaaaatcaatttaatgaagcttcaggc 84
Query: 85 aaaaaaccagataataaaatggattggatgtatgaaggtgcatttcaattatcaatg 141 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 aaaaaaccagataataaaatggattggatgtatgaaggtgcatttcaattatcaatg 141
Score = 182 bits (92), Expect(3) = e-110 Identities = 92/92 (100%) Strand = Plus / Plus
Query: 149 cagaaacagttgatgattatttattaggtaagaaaatagatgattcagcagaagatatta 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 cagaaacagttgatgattatttattaggtaagaaaatagatgattcagcagaagatatta 208
Query: 209 taaagaaagcggctcaattacctggtgcatta 240 |||||||||||||||||||||||||||||||| Sbjct: 209 taaagaaagcggctcaattacctggtgcatta 240
Score = 34.2 bits (17), Expect(3) = e-110 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1 aagaaaatagatcaatt 17 ||||||||||||||||| Sbjct: 1 aagaaaatagatcaatt 17
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 105743758 Number of Hits to DB: 543,608,998 Number of extensions: 36225094 Number of successful extensions: 2789411 Number of sequences better than 10.0: 61 Length of query: 420 Length of database: 104,622,809,269 Length adjustment: 23 Effective length of query: 397 Effective length of database: 102,190,702,835 Effective search space: 40569709025495 Effective search space used: 40569709025495 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 8. 2 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |