Contig-U05624-1
Contig ID Contig-U05624-1
Contig update 2001. 8.30
Contig sequence
>Contig-U05624-1 (Contig-U05624-1Q) /CSM_Contig/Contig-U05624-1Q.Seq.d
AAGAAAATAGATCAATTAAAAAAAGAAATGAGAGAAGAAGAGCAAATAAG
GGACTTAAAAAATCAATTTAATGAAGCTTCAGGCAAAAAACCAGATAATA
AAATGGATTGGATGTATGAAGGTGCATTTCAATTATCAATGAAAAAAACA
GAAACAGTTGATGATTATTTATTAGGTAAGAAAATAGATGATTCAGCAGA
AGATATTATAAAGAAAGCGGCTCAATTACCTGGTGCATTATTTCTTCATT
CAAATAGTAATGATAACCCTCAAGATATTAAAAGCCTCGTTAGAGAAGAC
CCATTAATGATAATTGAAAGAAAGAAACAAGAAGCACTTGATAAAATTAT
GAATAATCCCTTACAAATGAAAAAACTTGAAAAAGAGAAAAAAGAATCTG
ATAAAATTTTAAAAAAATTA

Gap no gap
Contig length 420
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1260227
End point 1259807
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05624
List of clone(s)

est1=SSJ823F,1,421
Translated Amino Acid sequence
KKIDQLKKEMREEEQIRDLKNQFNEASGKKPDNKMDWMYEGAFQLSMKKTETVDDYLLGK
KIDDSAEDIIKKAAQLPGALFLHSNSNDNPQDIKSLVREDPLMIIERKKQEALDKIMNNP
LQMKKLEKEKKESDKILKKL


Translated Amino Acid sequence (All Frames)
Frame A:
KKIDQLKKEMREEEQIRDLKNQFNEASGKKPDNKMDWMYEGAFQLSMKKTETVDDYLLGK
KIDDSAEDIIKKAAQLPGALFLHSNSNDNPQDIKSLVREDPLMIIERKKQEALDKIMNNP
LQMKKLEKEKKESDKILKKL


Frame B:
rk*in*kkk*ekksk*gt*kinlmklqaknqiikwigcmkvhfnyq*kkqkqlmiiy*vr
k*miqqkil*rkrlnylvhyffiqivmitlkilkaslekth***lkernkkhlikl*iip
yk*knlkkrkknlikf*kn


Frame C:
enrsikkrnerrrankglkksi**sfrqktr**ngldv*rcisiineknrns**lfir*e
nr*fsrryykesgsitwciissfk****psry*kpr*rrpindn*kketrst**nye*sl
tnekt*krekri**nfkki


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05624-1 (Contig-U05624-1Q)
/CSM_Contig/Contig-U05624-1Q.Seq.d
(420 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05624-1 (Contig-U05624-1Q) /CSM_Contig/Conti... 638 0.0
Contig-U12472-1 (Contig-U12472-1Q) /CSM_Contig/Conti... 34 0.11
Contig-U11360-1 (Contig-U11360-1Q) /CSM_Contig/Conti... 34 0.11
Contig-U05773-1 (Contig-U05773-1Q) /CSM_Contig/Conti... 34 0.11
Contig-U14241-1 (Contig-U14241-1Q) /CSM_Contig/Conti... 32 0.45
Contig-U13924-1 (Contig-U13924-1Q) /CSM_Contig/Conti... 32 0.45
Contig-U13325-1 (Contig-U13325-1Q) /CSM_Contig/Conti... 32 0.45
Contig-U11988-1 (Contig-U11988-1Q) /CSM_Contig/Conti... 32 0.45
Contig-U11739-1 (Contig-U11739-1Q) /CSM_Contig/Conti... 32 0.45
Contig-U11489-1 (Contig-U11489-1Q) /CSM_Contig/Conti... 32 0.45

>Contig-U05624-1 (Contig-U05624-1Q) /CSM_Contig/Contig-U05624-1Q.Seq.d
Length = 420

Score = 638 bits (322), Expect = 0.0
Identities = 350/364 (96%)
Strand = Plus / Plus


Query: 1 aagaaaatagatcaattnnnnnnngaaatgagagaagaagagcaaataagggacttaaaa 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaaaatagatcaattaaaaaaagaaatgagagaagaagagcaaataagggacttaaaa 60


Query: 61 aatcaatttaatgaagcttcaggcaaaaaaccagataataaaatggattggatgtatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatcaatttaatgaagcttcaggcaaaaaaccagataataaaatggattggatgtatgaa 120


Query: 121 ggtgcatttcaattatcaatgnnnnnnncagaaacagttgatgattatttattaggtaag 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgcatttcaattatcaatgaaaaaaacagaaacagttgatgattatttattaggtaag 180


Query: 181 aaaatagatgattcagcagaagatattataaagaaagcggctcaattacctggtgcatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaatagatgattcagcagaagatattataaagaaagcggctcaattacctggtgcatta 240


Query: 241 tttcttcattcaaatagtaatgataaccctcaagatattaaaagcctcgttagagaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttcttcattcaaatagtaatgataaccctcaagatattaaaagcctcgttagagaagac 300


Query: 301 ccattaatgataattgaaagaaagaaacaagaagcacttgataaaattatgaataatccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccattaatgataattgaaagaaagaaacaagaagcacttgataaaattatgaataatccc 360


Query: 361 ttac 364
||||
Sbjct: 361 ttac 364


>Contig-U12472-1 (Contig-U12472-1Q) /CSM_Contig/Contig-U12472-1Q.Seq.d
Length = 1106

Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 159 tgatgattatttattag 175
|||||||||||||||||
Sbjct: 926 tgatgattatttattag 942


>Contig-U11360-1 (Contig-U11360-1Q) /CSM_Contig/Contig-U11360-1Q.Seq.d
Length = 3470

Score = 34.2 bits (17), Expect = 0.11
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 55 ttaaaaaatcaatttaatgaa 75
|||||||||||| ||||||||
Sbjct: 338 ttaaaaaatcaaattaatgaa 358


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5337
Number of Sequences: 6905
Number of extensions: 5337
Number of successful extensions: 504
Number of sequences better than 10.0: 173
length of query: 420
length of database: 5,674,871
effective HSP length: 16
effective length of query: 404
effective length of database: 5,564,391
effective search space: 2248013964
effective search space used: 2248013964
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 8. 1
Homology vs DNA
Query= Contig-U05624-1 (Contig-U05624-1Q) /CSM_Contig/Contig-U05624-1Q.Seq.d
(420 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU074214) Dictyostelium discoideum slug cDNA, clone SSJ823. 232 e-110 3
(Z98748) Human DNA sequence from clone RP3-381E2 on chromoso... 48 0.27 1
(AC009303) Homo sapiens BAC clone RP11-98C1 from 2, complete... 48 0.27 1
(AC011925) Homo sapiens clone RP11-15M20, LOW-PASS SEQUENCE ... 48 0.27 1
(AM180355) Clostridium difficile 630 complete genome. 48 0.27 1
(AC179483) Strongylocentrotus purpuratus clone R3-1035N16, W... 38 0.79 4
(AC149722) Bos taurus clone CH240-244I10, WORKING DRAFT SEQU... 36 1.0 5
(AP009879) Lotus japonicus genomic DNA, chromosome 1, clone:... 46 1.1 1
(BH389750) AG-ND-137I14.TF.1 ND-TAM Anopheles gambiae genomi... 46 1.1 1
(FT045039) Rattus norvegicus DNA, BAC clone: RNB2-065B06, 3'... 46 1.1 1
(EJ483477) 1095403484617 Global-Ocean-Sampling_GS-28-01-01-1... 46 1.1 1
(BH159912) ENTTA05TR Entamoeba histolytica Sheared DNA Entam... 38 1.7 2
(EJ166538) 1092344067712 Global-Ocean-Sampling_GS-27-01-01-1... 40 1.8 2
(CT990547) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.7 4
(AC067801) Homo sapiens chromosome 18, clone RP11-583B12, co... 38 2.8 5
(AC212063) Zea mays chromosome 1 clone ZMMBBb-29B16; ZMMBBb0... 36 3.9 4
(AC024301) Homo sapiens, clone RP11-686O16, complete sequence. 38 4.0 5
(AC153907) Mus musculus BAC RP23-205F6 (Roswell Park Cancer... 40 4.0 5
(AC215315) Pongo abelii BAC clone CH276-289G9 from chromosom... 44 4.3 1
(AP006635) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 4.3 1
(AC214277) Populus trichocarpa clone ACSB1145-L17, complete ... 44 4.3 1
(EA214154) Sequence 78469 from patent US 7214786. 44 4.3 1
(AC150598) Callithrix jacchus clone CH259-172P3, WORKING DRA... 44 4.3 1
(AC122076) Rattus norvegicus clone CH230-277E22, *** SEQUENC... 44 4.3 1
(AC110630) Rattus norvegicus clone CH230-287B12, *** SEQUENC... 44 4.3 1
(AC103514) Rattus norvegicus clone CH230-77D13, WORKING DRAF... 44 4.3 1
(ER630420) 1093018421064 Global-Ocean-Sampling_GS-36-01-01-2... 44 4.3 1
(DX125122) OG_ABa0153G19.f OG_ABa Oryza granulata genomic cl... 44 4.3 1
(DX122820) OG_ABa0150E19.r OG_ABa Oryza granulata genomic cl... 44 4.3 1
(DU345593) 1098313104417 CHORI-243 Ovis aries genomic clone ... 44 4.3 1
(AL407602) T7 end of clone AV0AA003C08 of library AV0AA from... 44 4.3 1
(DH068816) Oryzias latipes Fosmid clone:GOLWFno140_e13, reve... 44 4.3 1
(DH068738) Oryzias latipes Fosmid clone:GOLWFno140_c13, reve... 44 4.3 1
(EL601876) He_pwd_0135E12_M13R Heliconius erato pooled wing ... 44 4.3 1
(EL601262) He_pwd_0220G01_M13R Heliconius erato pooled wing ... 44 4.3 1
(EB328924) CNSN01-F-108702-501 Normalized CNS library (juven... 44 4.3 1
(EB325941) CNSN01-F-104512-501 Normalized CNS library (juven... 44 4.3 1
(EB242068) PEG003-C-218852-501 Normalized Pedal-Pleural Gang... 44 4.3 1
(EB237713) PEG003-C-223275-501 Normalized Pedal-Pleural Gang... 44 4.3 1
(EB234388) PEG003-C-208595-501 Normalized Pedal-Pleural Gang... 44 4.3 1
(DT666676) He_wd2a1_06E09_M13R Heliconius erato wing disk 2 ... 44 4.3 1
(CA485695) WHE4321_H06_O11ZS Wheat meiotic anther cDNA libra... 44 4.3 1
(EY787663) CR05-C3-700-100-A06-CT.F Mandarin fruit, developm... 44 4.3 1
(EY755178) CS12-C1-001-025-A07-CT.F Sweet orange leaf, field... 44 4.3 1
(EY755040) CS12-C1-001-023-C03-CT.F Sweet orange leaf, field... 44 4.3 1
(EY744905) CS00-C5-003-005-G11-CT.F Sweet orange flower, gre... 44 4.3 1
(EY730334) CS00-C3-704-028-G04-CT.F Sweet orange fruit, deve... 44 4.3 1
(EY683287) CS00-C1-650-046-D03-CT.F Sweet orange leaf, young... 44 4.3 1
(DQ241783) Bacillus subtilis isolate DV7-B-4 quorum-sensing ... 44 4.3 1
(AY003901) Bacillus mojavensis RO-H-1 quorum sensing locus, ... 44 4.3 1
(AY003900) Bacillus subtilis strain RS-B-1 quorum sensing lo... 44 4.3 1
(AC196749) Citrus sinensis clone CSRBBa-017B06, WORKING DRAF... 34 4.3 5
(AC116243) Rattus norvegicus clone CH230-248N19, *** SEQUENC... 40 4.5 2
(AL159159) Human DNA sequence from clone RP11-88J11 on chrom... 34 5.0 3
(AC091067) Homo sapiens chromosome 18, clone RP11-702M18, co... 34 6.7 3
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 30 6.7 2
(AC159253) Mus musculus BAC clone RP24-110K11 from chromosom... 40 7.5 4
(AC211804) Populus trichocarpa clone POP017-B20, complete se... 32 8.0 2
(BZ696799) SP__Ba0088B18.f SP__Ba Sorghum propinquum genomic... 36 8.6 2
(CT010443) M.truncatula DNA sequence from clone MTH2-76G21 o... 36 9.3 2

>(AU074214) Dictyostelium discoideum slug cDNA, clone SSJ823.
Length = 240

Score = 232 bits (117), Expect(3) = e-110
Identities = 117/117 (100%)
Strand = Plus / Plus


Query: 25 gaaatgagagaagaagagcaaataagggacttaaaaaatcaatttaatgaagcttcaggc 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 gaaatgagagaagaagagcaaataagggacttaaaaaatcaatttaatgaagcttcaggc 84


Query: 85 aaaaaaccagataataaaatggattggatgtatgaaggtgcatttcaattatcaatg 141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 aaaaaaccagataataaaatggattggatgtatgaaggtgcatttcaattatcaatg 141

Score = 182 bits (92), Expect(3) = e-110
Identities = 92/92 (100%)
Strand = Plus / Plus


Query: 149 cagaaacagttgatgattatttattaggtaagaaaatagatgattcagcagaagatatta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cagaaacagttgatgattatttattaggtaagaaaatagatgattcagcagaagatatta 208


Query: 209 taaagaaagcggctcaattacctggtgcatta 240
||||||||||||||||||||||||||||||||
Sbjct: 209 taaagaaagcggctcaattacctggtgcatta 240

Score = 34.2 bits (17), Expect(3) = e-110
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1 aagaaaatagatcaatt 17
|||||||||||||||||
Sbjct: 1 aagaaaatagatcaatt 17

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 543,608,998
Number of extensions: 36225094
Number of successful extensions: 2789411
Number of sequences better than 10.0: 61
Length of query: 420
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 397
Effective length of database: 102,190,702,835
Effective search space: 40569709025495
Effective search space used: 40569709025495
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 8. 2
Homology vs Protein
Query= Contig-U05624-1 (Contig-U05624-1Q) /CSM_Contig/Contig-U05624-1Q.Seq.d
(420 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC003085_1(BC003085|pid:none) Homo sapiens coiled-coil domain co... 78 1e-13
BT025440_1(BT025440|pid:none) Bos taurus coiled-coil domain cont... 78 1e-13
(Q9NXE8) RecName: Full=Coiled-coil domain-containing protein 49;... 78 1e-13
BC021478_1(BC021478|pid:none) Mus musculus coiled-coil domain co... 77 1e-13
BC079553_1(BC079553|pid:none) Mus musculus coiled-coil domain co... 77 1e-13
(Q9DBF7) RecName: Full=Coiled-coil domain-containing protein 49;... 77 1e-13
BC076727_1(BC076727|pid:none) Xenopus laevis MGC81258 protein, m... 74 2e-12
BC076804_1(BC076804|pid:none) Xenopus laevis conserved hypotheti... 73 3e-12
BC158381_1(BC158381|pid:none) Xenopus tropicalis hypothetical pr... 72 8e-12
CU633899_115(CU633899|pid:none) Podospora anserina genomic DNA c... 71 1e-11
(Q4P6I3) RecName: Full=Pre-mRNA-splicing factor CWC25; 69 5e-11
(Q4IRI9) RecName: Full=Pre-mRNA-splicing factor CWC25; 67 1e-10
(Q5KIP8) RecName: Full=Pre-mRNA-splicing factor CWC25; &AE01734... 67 2e-10
(Q5B0I1) RecName: Full=Pre-mRNA-splicing factor cwc25; 67 3e-10
(Q7SI59) RecName: Full=Pre-mRNA-splicing factor cwc-25; &BX8426... 66 3e-10
AP007171_515(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 65 7e-10
(Q4X1D7) RecName: Full=Pre-mRNA-splicing factor cwc25; 64 1e-09
BC120314_1(BC120314|pid:none) Bos taurus coiled-coil domain cont... 62 8e-09
AL596446_4(AL596446|pid:none) Mouse DNA sequence from clone RP23... 61 1e-08
(Q9Y805) RecName: Full=Pre-mRNA-splicing factor cwc25; AltName: ... 60 2e-08
CP001325_383(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 59 4e-08
AM270369_11(AM270369|pid:none) Aspergillus niger contig An16c017... 57 3e-07
AM920437_2051(AM920437|pid:none) Penicillium chrysogenum Wiscons... 55 6e-07
FB835320_1(FB835320|pid:none) Sequence 54593 from Patent WO20080... 52 8e-06
AK064018_1(AK064018|pid:none) Oryza sativa Japonica Group cDNA c... 51 1e-05
AL034557_30(AL034557|pid:none) Plasmodium falciparum MAL4P1. &A... 46 4e-04
CP000588_235(CP000588|pid:none) Ostreococcus lucimarinus CCE9901... 46 4e-04
AC004005_35(AC004005|pid:none) Arabidopsis thaliana chromosome 2... 45 0.001
AM910985_5(AM910985|pid:none) Plasmodium knowlesi strain H chrom... 42 0.009
CU928170_135(CU928170|pid:none) Kluyveromyces thermotolerans str... 39 0.074
DQ641631_1(DQ641631|pid:none) Caenorhabditis elegans sex determi... 39 0.074
CP000628_528(CP000628|pid:none) Agrobacterium radiobacter K84 ch... 37 0.28
EU579524_1(EU579524|pid:none) Plasmodium berghei sporozoite and ... 36 0.37
AY042084_3(AY042084|pid:none) Plasmodium falciparum erythrocyte ... 36 0.48
T26102(T26102) hypothetical protein W02B8.3 - Caenorhabditis ele... 35 0.63
(B5ZN41) RecName: Full=Probable GTP-binding protein engB; &CP00... 35 0.82
CP000312_546(CP000312|pid:none) Clostridium perfringens SM101, c... 35 1.1
BA000016_603(BA000016|pid:none) Clostridium perfringens str. 13 ... 34 1.4
EF107401_1(EF107401|pid:none) Rhyacotriton variegatus isolate 10... 34 1.4
BX571873_160(BX571873|pid:none) Photorhabdus luminescens subsp. ... 34 1.4
CP000903_559(CP000903|pid:none) Bacillus weihenstephanensis KBAB... 34 1.8
CP000109_1436(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 33 2.4
DQ653057_1(DQ653057|pid:none) Arabidopsis thaliana clone 0000009... 33 3.1
DQ446621_1(DQ446621|pid:none) Arabidopsis thaliana clone pENTR22... 33 3.1
(Q1MM59) RecName: Full=Probable GTP-binding protein engB; &AM23... 33 3.1
AL844505_44(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 33 3.1
AP006861_277(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 33 3.1
CP001622_93(CP001622|pid:none) Rhizobium leguminosarum bv. trifo... 33 3.1
(P46323) RecName: Full=Putative competence-damage inducible prot... 33 4.1
AL513384_93(AL513384|pid:none) Salmonella enterica subsp. enteri... 33 4.1
(A7Z4W4) RecName: Full=Putative competence-damage inducible prot... 33 4.1
AL031745_24(AL031745|pid:none) Plasmodium falciparum DNA from MA... 33 4.1
CP000745_130(CP000745|pid:none) Methanococcus maripaludis C7, co... 33 4.1
EF107406_1(EF107406|pid:none) Amphiuma means isolate 1095AmpMea ... 33 4.1
CP001251_914(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 33 4.1
EF107360_1(EF107360|pid:none) Plethodon cinereus isolate 0783Ple... 32 5.3
AM778949_47(AM778949|pid:none) Microcystis aeruginosa PCC 7806 g... 32 5.3
EF107391_1(EF107391|pid:none) Desmognathus monticola isolate 104... 32 5.3
AP007281_1314(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 32 5.3
(Q6FLB1) RecName: Full=Transcription elongation factor SPT6; Alt... 32 5.3
CP001146_808(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 32 6.9
CP001291_3127(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 32 6.9
CP000485_557(CP000485|pid:none) Bacillus thuringiensis str. Al H... 32 6.9
EF107397_1(EF107397|pid:none) Eurycea quadridigitata isolate 105... 32 6.9
(P52488) RecName: Full=Ubiquitin-activating enzyme E1-like; AltN... 32 6.9
CP000812_407(CP000812|pid:none) Thermotoga lettingae TMO, comple... 32 9.0
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B... 32 9.0
FM992691_90(FM992691|pid:none) Candida dubliniensis CD36 chromos... 32 9.0
BC006349_1(BC006349|pid:none) Homo sapiens zinc finger protein 7... 32 9.0
AM444554_2(AM444554|pid:none) Vitis vinifera contig VV79X006279.... 32 9.0
AJ277892_3(AJ277892|pid:none) Homo sapiens partial TTN gene for ... 32 9.0
AB174611_1(AB174611|pid:none) Macaca fascicularis brain cDNA clo... 32 9.0
(Q04E86) RecName: Full=DNA-directed RNA polymerase subunit beta'... 32 9.0
(Q9Y462) RecName: Full=Zinc finger protein 711; AltName: Full=Zi... 32 9.0
BC067294_1(BC067294|pid:none) Homo sapiens zinc finger protein 7... 32 9.0
T19897(T19897) hypothetical protein C41G7.6 - Caenorhabditis ele... 32 9.0

>BC003085_1(BC003085|pid:none) Homo sapiens coiled-coil domain
containing 49, mRNA (cDNA clone IMAGE:3358029), partial
cds.
Length = 189

Score = 77.8 bits (190), Expect = 1e-13
Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 9/132 (6%)
Frame = +1

Query: 1 KKIDQLKKEMREEEQIRDLKNQFNEASG-KKPDNKMDWMYEGAFQLSMKKTETVDDYLLG 177
KKI++L++E+REE +++ + KK + K+DWMY+G + + D+YLLG
Sbjct: 35 KKIEELQRELREERAREEMQRYAEDVGAVKKKEEKLDWMYQGPGGMVNR-----DEYLLG 89

Query: 178 KKIDDSA-EDIIKKAAQ-------LPGALFLHSNSNDNPQDIKSLVREDPLMIIERKKQE 333
+ ID E + +K A LPG++F S +N + D+ S +REDPL II +K++E
Sbjct: 90 RPIDKYVFEKMEEKEAGCSSETGLLPGSIFAPSGAN-SLLDMASKIREDPLFIIRKKEEE 148

Query: 334 ALDKIMNNPLQM 369
+++NNP++M
Sbjct: 149 KKREVLNNPVKM 160

Lambda K H
0.311 0.130 0.355

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 501,394,377
Number of extensions: 8143225
Number of successful extensions: 32629
Number of sequences better than 10.0: 76
Number of HSP's gapped: 32572
Number of HSP's successfully gapped: 76
Length of query: 140
Length of database: 1,061,185,681
Length adjustment: 104
Effective length of query: 36
Effective length of database: 721,267,089
Effective search space: 25965615204
Effective search space used: 25965615204
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.30 gvh: 0.24 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U05624-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0