| Contig-U05606-1 |
| Contig ID |
Contig-U05606-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
907 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
5143931 |
| End point |
5144846 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U05606 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 8. 1 |
| Homology vs DNA |
Query= Contig-U05606-1 (Contig-U05606-1Q) /CSM_Contig/Contig-U05606-1Q.Seq.d
(907 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C91281) Dictyostelium discoideum slug cDNA, clone SSJ744. 515 0.0 3
(AU074188) Dictyostelium discoideum slug cDNA, clone SSJ744. 476 e-130 1
(AJ010592) Guillardia theta DNA for complete sequence of nuc... 38 7e-04 10
(AL132847) Caenorhabditis elegans YAC Y48G10A. 38 0.005 6
(FJ686871) Glycine max clone gmw1-61M05, complete sequence. 36 0.031 5
(AL844506) Plasmodium falciparum 3D7 chromosome 7. 40 0.034 16
(AL844505) Plasmodium falciparum 3D7 chromosome 6. 36 0.050 16
(AM439100) Vitis vinifera contig VV78X234571.2, whole genome... 38 0.12 2
(AC116919) Dictyostelium discoideum chromosome 2 map complem... 50 0.15 1
(AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 50 0.15 1
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 0.16 12
(CS468838) Sequence 29 from Patent EP1748080. 34 0.19 5
(CS468837) Sequence 28 from Patent EP1748080. 34 0.19 5
(CS419315) Sequence 29 from Patent WO2006094836. 34 0.19 5
(CS419314) Sequence 28 from Patent WO2006094836. 34 0.19 5
(FH121949) CHO_OF3292xg19f1.ab1 CHO_OF3 Nicotiana tabacum ge... 38 0.44 2
(CU467865) Zebrafish DNA sequence from clone CH73-296E2 in l... 46 0.48 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 0.50 14
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 32 0.56 20
(AC003979) Arabidopsis thaliana chromosome 1 BAC T22J18 sequ... 36 0.59 8
(AC160162) Bos taurus clone CH240-87D24, WORKING DRAFT SEQUE... 48 0.61 1
(AC175254) Bos taurus clone CH240-45O10, WORKING DRAFT SEQUE... 48 0.61 1
(FI827176) SIR-53M12TF Sisymbrium irio BAC library SIR Sisym... 48 0.61 1
(CP000099) Methanosarcina barkeri str. Fusaro, complete genome. 48 0.61 1
(AC141255) Homo sapiens chromosome 16 clone RP11-1273A17, WO... 38 0.83 5
(AC234956) Medicago truncatula clone mth2-143i17, WORKING DR... 36 0.85 9
(AC187492) Rhesus macaque BAC clone CH250-73H12 from chromos... 38 0.88 7
(AC025721) Caenorhabditis elegans cosmid Y48G8AL, complete s... 38 0.90 5
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 34 1.1 21
(DH384960) Oryzias latipes Fosmid clone:GOLWFno767_n18, forw... 44 1.2 2
(AC160266) Bos taurus clone CH240-80J21, WORKING DRAFT SEQUE... 36 1.4 9
(AL844503) Plasmodium falciparum 3D7 chromosome 4. 34 1.5 17
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 1.5 14
(AC235506) Mustela putorius furo clone CH237-470I2, WORKING ... 40 1.6 4
(EL928011) NY4Tr1_19_G06.g1_A039 NY4 trophonts (NY4Tr1) Icht... 36 1.7 2
(AP010520) Lotus japonicus genomic DNA, chromosome 5, clone:... 42 1.7 2
(EJ655028) 1092955002988 Global-Ocean-Sampling_GS-30-02-01-1... 44 1.8 2
(EJ734731) 1092961086182 Global-Ocean-Sampling_GS-30-02-01-1... 44 1.9 2
(EJ873967) 1093018359369 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.0 2
(BX957233) Zebrafish DNA sequence from clone DKEY-224H10 in ... 40 2.1 2
(EJ816330) 1093017517837 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.1 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 2.2 11
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 2.2 16
(CR388231) Zebrafish DNA sequence from clone DKEY-183C6 in l... 46 2.4 1
(AL929502) Zebrafish DNA sequence from clone CH211-69G19 in ... 46 2.4 1
(AM466693) Vitis vinifera, whole genome shotgun sequence, co... 46 2.4 1
(AC091877) Homo sapiens chromosome 5 clone CTD-3061E14, comp... 46 2.4 1
(CU633593) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.4 1
(CU407169) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.4 1
(BX957283) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.4 1
(AC178966) Strongylocentrotus purpuratus clone R3-3121P10, W... 46 2.4 1
(EJ589803) 1092961042664 Global-Ocean-Sampling_GS-29-01-01-1... 46 2.4 1
(ED730388) GM_WBb0087D08.r GM_WBb Glycine max genomic clone ... 46 2.4 1
(CL338268) RPCI44_265H12.r RPCI-44 Sus scrofa genomic clone ... 46 2.4 1
(EE641113) CHEM12202.b1_D04.ab1 CHE(LMS) serpentine sunflowe... 46 2.4 1
(DY934847) CHPX13764.b1_H10.ab1 CHP(XYZ) plains sunflower He... 46 2.4 1
(DY934155) CHPX12556.b1_G20.ab1 CHP(XYZ) plains sunflower He... 46 2.4 1
(GE508402) CCFT6555.b1_E07.ab1 CCF(STU) sunflower Helianthus... 46 2.4 1
(GE488981) CCFS388.b1_G01.ab1 CCF(STU) sunflower Helianthus ... 46 2.4 1
(AC171177) Gallus gallus BAC clone CH261-178G24 from chromos... 32 2.5 9
(AC156786) Rhinolophus ferrumequinum clone VMRC7-49F13, WORK... 38 3.0 6
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 3.1 11
(CT348793) Sus scrofa genomic clone CH242-332M15, genomic su... 32 3.2 3
(AC006798) Caenorhabditis elegans clone Y51F8, *** SEQUENCIN... 38 3.4 6
(FJ686870) Glycine max clone gmw1-54G21, *** SEQUENCING IN P... 36 3.4 5
(AX344560) Sequence 11 from Patent WO0200932. 36 3.4 10
(BH167295) ENTRR79TR Entamoeba histolytica Sheared DNA Entam... 32 3.4 3
(BM164266) EST566789 PyBS Plasmodium yoelii yoelii cDNA clon... 42 3.9 2
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 36 4.0 14
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 32 4.0 9
(AC046184) Homo sapiens chromosome 15 clone CTD-2014F9 map 1... 34 4.1 8
(AL391254) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 34 4.1 4
(BM161331) EST563854 PyBS Plasmodium yoelii yoelii cDNA clon... 42 4.2 2
(BM163371) EST565894 PyBS Plasmodium yoelii yoelii cDNA clon... 42 4.3 2
(AL117193) Caenorhabditis elegans YAC Y105C5A. 32 4.4 12
(BM160907) EST563430 PyBS Plasmodium yoelii yoelii cDNA clon... 42 4.4 2
(AC155293) Mus musculus BAC clone RP24-427L24 from chromosom... 32 4.6 2
(AC127994) Rattus norvegicus clone CH230-400N13, WORKING DRA... 42 4.7 4
(CU914681) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 4.8 6
(AE017263) Mesoplasma florum L1 complete genome. 32 4.8 17
(AC107365) Danio rerio, clone -241I7, complete sequence. 34 4.9 6
(AC161399) Medicago truncatula chromosome 2 clone mte1-30k4,... 34 4.9 6
(BM168410) EST570933 PyBS Plasmodium yoelii yoelii cDNA clon... 42 5.1 2
(AC104124) Homo sapiens chromosome 5 clone RP11-420J9, WORKI... 36 5.3 8
(AC011673) Homo sapiens clone RP11-10H19, WORKING DRAFT SEQU... 32 5.4 7
(AC145901) Pan troglodytes BAC clone RP43-9F20 from chromoso... 40 5.4 6
(DX419049) MUGQ_CH252P033M11Sp6_GL438_036 CHORI-252 Vervet M... 36 5.6 2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 5.6 11
(FB571381) Sequence 248 from Patent EP1865317. 36 5.7 8
(FB571325) Sequence 192 from Patent EP1865317. 36 5.7 8
(GN009183) Sequence 1624 from Patent EP2014669. 32 5.7 10
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 32 5.8 9
(BI642597) TZS248 TZS (Sapwood-heartwood transition zone of ... 36 5.9 2
(AC215358) Solanum lycopersicum chromosome 2 clone C02HBa002... 40 6.0 6
(AL844504) Plasmodium falciparum 3D7 chromosome 5. 34 6.0 18
(BH934815) odf87h11.g1 B.oleracea002 Brassica oleracea genom... 42 6.0 2
(CP000395) Borrelia afzelii PKo, complete genome. 32 6.1 15
(DU356790) 1098312069453 CHORI-243 Ovis aries genomic clone ... 34 6.1 2
(FH334465) CHO_OF4587xd13r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 6.1 2
(FI313055) AdH1192-CPY2-O12TR AdH1 Arachis duranensis genomi... 34 6.1 2
(AC157043) Bos taurus clone CH240-69E7, WORKING DRAFT SEQUEN... 36 6.2 5
(AL844502) Plasmodium falciparum 3D7 chromosome 3. 32 6.2 17
(AM661436) Entamoeba moshkovskii FIC GSS, clone mosh109e09.p1k. 34 6.5 2
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 6.9 9
(CP000881) Hemiselmis andersenii chromosome 1, complete sequ... 36 7.0 10
(AC195011) Otolemur garnettii clone CH256-169B3, WORKING DRA... 38 7.1 7
(EJ192230) 1092344208749 Global-Ocean-Sampling_GS-27-01-01-1... 36 7.2 3
(AC150859) Bos taurus clone CH240-432D12, WORKING DRAFT SEQU... 40 7.4 6
(AL928790) Zebrafish DNA sequence from clone CH211-146N9 in ... 36 7.5 9
(ED658191) GM_WBa0078N10.r GM_WBa Glycine max genomic clone ... 36 7.5 3
(FP245445) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 7.5 6
(AC219707) Bos taurus clone CH240-324P7, WORKING DRAFT SEQUE... 40 7.7 6
(BX547941) Zebrafish DNA sequence from clone RP71-1C23 in li... 34 7.8 7
(AC152904) Sus scrofa clone RP44-202B20, WORKING DRAFT SEQUE... 34 8.0 8
(AC209585) Solanum lycopersicum DNA sequence from clone LE_H... 36 8.0 4
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 34 8.3 17
(FG295791) 1108770741540 New World Screwworm Larvae 9387 EST... 42 8.3 2
(FG293345) 1108770669958 New World Screwworm Larvae 9387 EST... 42 8.3 2
(GO218251) CAGB27232.fwd CAGB Alvinella pompejana Normalized... 30 8.4 3
(AC141980) Rattus norvegicus clone CH230-37D24, *** SEQUENCI... 34 8.5 7
(AC022314) Genomic sequence for Arabidopsis thaliana BAC F9C... 30 8.5 9
(CU929378) Zebrafish DNA sequence from clone CH73-78O10 in l... 38 8.5 5
(FI241044) CccaBb029-H2JF CccABb Cajanus cajan genomic clone... 36 9.2 3
(CU179700) Zebrafish DNA sequence from clone CH211-194I14. 44 9.5 1
(BX957284) Zebrafish DNA sequence from clone CH211-10N1 in l... 44 9.5 1
(BX640454) Zebrafish DNA sequence from clone CH211-1A19 in l... 44 9.5 1
(BX548043) Zebrafish DNA sequence from clone DKEY-81J8 in li... 44 9.5 1
(AL807815) Mouse DNA sequence from clone RP23-207H16 on chro... 44 9.5 1
(AC159631) Mus musculus BAC clone RP24-177F21 from chromosom... 44 9.5 1
(AC105948) Mus musculus chromosome 8, clone RP24-96N12, comp... 44 9.5 1
(FJ225394) Glycine max clone GM_WBb0070A12 dehydration respo... 44 9.5 1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.5 1
(AM465371) Vitis vinifera contig VV78X071976.5, whole genome... 44 9.5 1
(AC174363) Medicago truncatula chromosome 8 clone mth2-41c1,... 44 9.5 1
(AC152871) Medicago truncatula clone mth2-83e5, complete seq... 44 9.5 1
(AC151425) Medicago truncatula chromosome 8 clone mth2-4l6, ... 44 9.5 1
(AC137064) Oryza sativa Japonica Group chromosome 11 clone O... 44 9.5 1
(EA701407) Sequence 80286 from patent US 7365185. 44 9.5 1
(GN009054) Sequence 1495 from Patent EP2014669. 44 9.5 1
(AC188158) Canis Familiaris chromosome 14, clone XX-191D2, c... 44 9.5 1
(AL512649) Human DNA sequence from clone RP11-308N19 on chro... 44 9.5 1
(AC141841) Apis mellifera clone CH224-4A4, WORKING DRAFT SEQ... 44 9.5 1
(AC114333) Canis lupus familiaris clone RP81-5B8, WORKING DR... 44 9.5 1
(FP325355) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.5 1
(CU571197) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.5 1
(AC224792) Bos taurus clone CH240-476J10, WORKING DRAFT SEQU... 44 9.5 1
(AC221709) Bos taurus clone CH240-388A3, WORKING DRAFT SEQUE... 44 9.5 1
(AC208747) Myotis lucifugus clone CH235-149A8, WORKING DRAFT... 44 9.5 1
(AC207623) Zea mays chromosome 2 clone CH201-120B20; ZMMBBc0... 44 9.5 1
(AC203881) Zea mays chromosome 7 clone CH201-122F7; ZMMBBc01... 44 9.5 1
(AC202518) Medicago truncatula clone mth2-6p16, WORKING DRAF... 44 9.5 1
(AC196032) Zea mays chromosome 7 clone CH201-113B1; ZMMBBc01... 44 9.5 1
(AC179829) Strongylocentrotus purpuratus clone R3-1012F22, W... 44 9.5 1
(AC172030) Bos taurus clone CH240-257I1, WORKING DRAFT SEQUE... 44 9.5 1
(AZ611158) 1M0436K03R Mouse 10kb plasmid UUGC1M library Mus ... 44 9.5 1
(AQ573987) nbxb0083M01f CUGI Rice BAC Library Oryza sativa J... 44 9.5 1
(AQ505237) RPCI-11-281A11.TV RPCI-11 Homo sapiens genomic cl... 44 9.5 1
(FH929439) CHO_NF2009xi19f1.ab1 CHO_NF2 Nicotiana tabacum ge... 44 9.5 1
(FH211931) CHO_OF3367xg03r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 9.5 1
(ER508710) 1093015432397 Global-Ocean-Sampling_GS-35-01-01-1... 44 9.5 1
(ER403902) 1095353010687 Global-Ocean-Sampling_GS-34-01-01-1... 44 9.5 1
(EK158058) 1095458013409 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.5 1
(EJ986502) 1093023015411 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.5 1
(EJ817345) 1093017522058 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.5 1
(AM622793) Entamoeba invadens IP1 GSS, clone inv107a12.q1k. 44 9.5 1
(EJ758345) 1092963103898 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.5 1
(EJ754608) 1092963067255 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.5 1
(EJ736159) 1092961155802 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.5 1
(EJ713314) 1092956091517 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.5 1
(EJ672953) 1092955065989 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.5 1
(EJ598218) 1092961111422 Global-Ocean-Sampling_GS-29-01-01-1... 44 9.5 1
(EJ442185) 1093015309668 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.5 1
(ED324787) AUAC-aau50f01.b1 Ascaris suum whole genome shotgu... 44 9.5 1
(ED195136) AUAC-aac94h05.b1 Ascaris suum whole genome shotgu... 44 9.5 1
(ED088064) AUAC-aao05h06.g1 Ascaris suum whole genome shotgu... 44 9.5 1
(DX918471) ILL5588 (Northfield) - UNK27 (H182) Lens culinari... 44 9.5 1
(CW149154) 104_548_11142333_148_36290_095 Sorghum methylatio... 44 9.5 1
(CW149153) 104_548_11142333_116_36289_095 Sorghum methylatio... 44 9.5 1
(CW028171) 104_255_10498935_116_30393 Sorghum methylation fi... 44 9.5 1
(CW028170) 104_255_10498935_114_30394 Sorghum methylation fi... 44 9.5 1
(CU206803) Equus caballus GSS, BAC clone CH241-364B4, T7 end... 44 9.5 1
(CT257254) Sus scrofa genomic clone CH242-228A9, genomic sur... 44 9.5 1
(CR963504) mth4-11H8RM1 BAC end, cultivar Jemalong A17 of Me... 44 9.5 1
(AG912660) Drosophila auraria DNA, clone: DAB1-007K09.R.fa, ... 44 9.5 1
(AG837261) Oryza sativa Indica Group genomic DNA, BAC end se... 44 9.5 1
(CG965833) MBELU27TF mth2 Medicago truncatula genomic clone ... 44 9.5 1
(CG938214) MBEAG75TF mth2 Medicago truncatula genomic clone ... 44 9.5 1
(CG923746) MBELH79TR mth2 Medicago truncatula genomic clone ... 44 9.5 1
(CG922631) MBEHG02TR mth2 Medicago truncatula genomic clone ... 44 9.5 1
(CC916099) t090f11ba.f1 TAMBT Bos taurus genomic clone t090f... 44 9.5 1
(CC453760) BARC-Sat_220 Size-selected soybean genomic Glycin... 44 9.5 1
(BZ401267) EINCN78TR EI_10_12_KB Entamoeba invadens genomic ... 44 9.5 1
(BX195351) Danio rerio genomic clone DKEY-208M8, genomic sur... 44 9.5 1
(ES401783) MUT05-E04.x1d-t SHGC-MUT Mytilus californianus cD... 44 9.5 1
(ES390582) MUS01-A12.x1d-t SHGC-MUS Mytilus californianus cD... 44 9.5 1
(CN857662) 000722AAAA006655HT (AAAA) Royal Gala 59 DAFB frui... 44 9.5 1
(AJ498435) Medicago truncatula EST, clone mt--acc955204g08. 44 9.5 1
(BU801122) SJF2CZG12 SJF Schistosoma japonicum cDNA, mRNA se... 44 9.5 1
(BX537116) Zebrafish DNA sequence from clone DKEY-235I4 in l... 32 9.7 8
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 9.8 10
(CR925719) Zebrafish DNA sequence from clone DKEYP-68F4 in l... 40 9.9 3
>(C91281) Dictyostelium discoideum slug cDNA, clone SSJ744.
Length = 586
Score = 515 bits (260), Expect(3) = 0.0
Identities = 260/260 (100%)
Strand = Plus / Plus
Query: 328 tgataaattcagttttagtttcagggccatggttgggtgtcatagaatttccttcattga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgataaattcagttttagtttcagggccatggttgggtgtcatagaatttccttcattga 60
Query: 388 atccaataacaatgatttttccttattttattagggacaatcgtaaaagaattcagactt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atccaataacaatgatttttccttattttattagggacaatcgtaaaagaattcagactt 120
Query: 448 ggaataaacaaatattctcaaataaatttttaacctctccttcaaaacaagatcctgaat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggaataaacaaatattctcaaataaatttttaacctctccttcaaaacaagatcctgaat 180
Query: 508 tattaaatggtgatttattagtccaaatgtatttaaaaagtaagagtgtgattacatata 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattaaatggtgatttattagtccaaatgtatttaaaaagtaagagtgtgattacatata 240
Query: 568 cacctaaaaatgtattaacc 587
||||||||||||||||||||
Sbjct: 241 cacctaaaaatgtattaacc 260
Score = 347 bits (175), Expect(3) = 0.0
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 733 ttttcctctgaaataaatgcatgcaaactatatgttgctgactcaggtcatcttcttact 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttttcctctgaaataaatgcatgcaaactatatgttgctgactcaggtcatcttcttact 461
Query: 793 attgaggattctgaatttataaatagtaccatagtgaaacatatttacaactcaaatcta 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 attgaggattctgaatttataaatagtaccatagtgaaacatatttacaactcaaatcta 521
Query: 853 acttatgatttccctcaaaataacattataataaatagtaaattataatatacaa 907
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acttatgatttccctcaaaataacattataataaatagtaaattataatatacaa 576
Score = 188 bits (95), Expect(3) = 0.0
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 631 acaaaatcaaagaaaaatgatatttttgaacggccatatgcaaaaattggagtcattgca 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acaaaatcaaagaaaaatgatatttttgaacggccatatgcaaaaattggagtcattgca 359
Query: 691 tccaaacatgaccaaatagttaattttgaaatatt 725
|||||||||||||||||||||||||||||||||||
Sbjct: 360 tccaaacatgaccaaatagttaattttgaaatatt 394
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,408,232,385
Number of extensions: 92269161
Number of successful extensions: 7785749
Number of sequences better than 10.0: 202
Length of query: 907
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 883
Effective length of database: 102,084,959,077
Effective search space: 90141018864991
Effective search space used: 90141018864991
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 8. 2 |
| Homology vs Protein |
Query= Contig-U05606-1 (Contig-U05606-1Q) /CSM_Contig/Contig-U05606-1Q.Seq.d
(907 letters)
Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC116919_10(AC116919|pid:none) Dictyostelium discoideum chromoso... 83 1e-14
AP007162_289(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 59 2e-07
CP001078_566(CP001078|pid:none) Clostridium botulinum E3 str. Al... 56 2e-06
CP001034_2685(CP001034|pid:none) Natranaerobius thermophilus JW/... 53 2e-05
CP000020_1730(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 52 3e-05
FM178379_913(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c... 52 3e-05
CP000879_487(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 50 1e-04
BT064520_1(BT064520|pid:none) Zea mays full-length cDNA clone ZM... 49 2e-04
AK226315_1(AK226315|pid:none) Arabidopsis thaliana mRNA for hypo... 47 7e-04
EU957771_1(EU957771|pid:none) Zea mays clone 1615530 catalytic/ ... 47 0.001
BT041048_1(BT041048|pid:none) Zea mays full-length cDNA clone ZM... 47 0.001
AE016830_946(AE016830|pid:none) Enterococcus faecalis V583, comp... 46 0.002
AB071607_1(AB071607|pid:none) Acinetobacter sp. no. 6 aelh gene ... 46 0.002
AE008919_52(AE008919|pid:none) Uncultured marine proteobacterium... 46 0.002
AM398681_526(AM398681|pid:none) Flavobacterium psychrophilum JIP... 45 0.003
AK071703_1(AK071703|pid:none) Oryza sativa Japonica Group cDNA c... 45 0.003
D97659(D97659)probable acetyltransferase (AE005300) [imported] -... 45 0.003
AC104713_18(AC104713|pid:none) Oryza sativa (japonica cultivar-g... 45 0.003
CP000875_3589(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 45 0.003
CP000348_2424(CP000348|pid:none) Leptospira borgpetersenii serov... 45 0.004
AF071233_1(AF071233|pid:none) Sulfolobus acidocaldarius lipolyti... 45 0.004
CP000489_1170(CP000489|pid:none) Paracoccus denitrificans PD1222... 44 0.006
AE007869_2438(AE007869|pid:none) Agrobacterium tumefaciens str. ... 43 0.013
CP000001_1973(CP000001|pid:none) Bacillus cereus E33L, complete ... 43 0.017
CP000631_142(CP000631|pid:none) Agrobacterium radiobacter K84 pl... 43 0.017
CP000323_750(CP000323|pid:none) Psychrobacter cryohalolentis K5,... 43 0.017
AF109074_3(AF109074|pid:none) Alcaligenes sp. O-1 hypothetical I... 42 0.022
CP000713_772(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 42 0.022
CU459141_1613(CU459141|pid:none) Acinetobacter baumannii str. AY... 42 0.022
AE017194_2230(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 42 0.029
AE017225_2033(AE017225|pid:none) Bacillus anthracis str. Sterne,... 42 0.038
CP001283_2155(CP001283|pid:none) Bacillus cereus AH820, complete... 42 0.038
AE017355_1970(AE017355|pid:none) Bacillus thuringiensis serovar ... 42 0.038
CP000058_1378(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 42 0.038
CP001195_209(CP001195|pid:none) Rhizobium leguminosarum bv. trif... 41 0.049
AE015451_4479(AE015451|pid:none) Pseudomonas putida KT2440 compl... 41 0.064
CP000712_1333(CP000712|pid:none) Pseudomonas putida F1, complete... 41 0.064
CP000227_2054(CP000227|pid:none) Bacillus cereus Q1, complete ge... 41 0.064
CU633876_147(CU633876|pid:none) Podospora anserina genomic DNA c... 41 0.064
CP001037_6013(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 40 0.084
CP001053_749(CP001053|pid:none) Burkholderia phytofirmans PsJN c... 40 0.11
CP000903_1999(CP000903|pid:none) Bacillus weihenstephanensis KBA... 40 0.11
CP001176_2061(CP001176|pid:none) Bacillus cereus B4264, complete... 40 0.11
CP000863_1962(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 40 0.11
CR628336_307(CR628336|pid:none) Legionella pneumophila str. Pari... 40 0.14
CP001291_3354(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 40 0.14
CP001108_1335(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 40 0.14
CP000675_308(CP000675|pid:none) Legionella pneumophila str. Corb... 40 0.14
AE017354_236(AE017354|pid:none) Legionella pneumophila subsp. pn... 40 0.14
AE016879_3562(AE016879|pid:none) Bacillus anthracis str. Ames, c... 39 0.19
CP000713_990(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 39 0.19
CP000323_1256(CP000323|pid:none) Psychrobacter cryohalolentis K5... 39 0.19
CP000312_407(CP000312|pid:none) Clostridium perfringens SM101, c... 39 0.19
AP006627_1966(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 39 0.19
BX640424_82(BX640424|pid:none) Bordetella parapertussis strain 1... 39 0.24
BX640411_225(BX640411|pid:none) Bordetella pertussis strain Toha... 39 0.24
CP000075_4477(CP000075|pid:none) Pseudomonas syringae pv. syring... 39 0.24
AE010299_2615(AE010299|pid:none) Methanosarcina acetivorans str.... 39 0.24
(P00632) RecName: Full=3-oxoadipate enol-lactonase 2; E... 39 0.32
CP000875_4149(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 39 0.32
CP000680_1285(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 39 0.32
CP000414_679(CP000414|pid:none) Leuconostoc mesenteroides subsp.... 39 0.32
CP000926_4021(CP000926|pid:none) Pseudomonas putida GB-1, comple... 38 0.54
CP001100_522(CP001100|pid:none) Chloroherpeton thalassium ATCC 3... 38 0.54
CP000304_3520(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 38 0.54
CP000267_300(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 38 0.54
CP000853_2735(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 37 0.71
AM181176_1336(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 37 0.71
AE003852_1697(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 37 0.71
AE1338(AE1338) hydrolase homolog lmo2109 [imported] - Listeria m... 37 0.71
BA000012_1047(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 37 0.71
CP000471_2926(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 37 0.71
CP000686_2162(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 37 0.93
CP000494_4996(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 37 0.93
AM406671_1700(AM406671|pid:none) Lactococcus lactis subsp. cremo... 37 0.93
AL844509_331(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.93
CP000248_1429(CP000248|pid:none) Novosphingobium aromaticivorans... 37 0.93
CP001636_744(CP001636|pid:none) Variovorax paradoxus S110 chromo... 37 0.93
CP000246_302(CP000246|pid:none) Clostridium perfringens ATCC 131... 37 1.2
CP000949_3809(CP000949|pid:none) Pseudomonas putida W619, comple... 37 1.2
AM408590_3207(AM408590|pid:none) Mycobacterium bovis BCG Pasteur... 37 1.2
BA000016_432(BA000016|pid:none) Clostridium perfringens str. 13 ... 37 1.2
CP000804_3288(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 37 1.2
CP000312_289(CP000312|pid:none) Clostridium perfringens SM101, c... 36 1.6
FM242711_2099(FM242711|pid:none) Listeria monocytogenes Clip8145... 36 1.6
CP000724_2242(CP000724|pid:none) Alkaliphilus metalliredigens QY... 36 1.6
AX064187_1(AX064187|pid:none) Sequence 469 from Patent WO0100843... 36 1.6
CP000353_397(CP000353|pid:none) Ralstonia metallidurans CH34 meg... 36 1.6
AP009044_2318(AP009044|pid:none) Corynebacterium glutamicum R DN... 36 1.6
AM167904_305(AM167904|pid:none) Bordetella avium 197N complete g... 36 1.6
CP000094_1428(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 36 2.1
CP000774_1673(CP000774|pid:none) Parvibaculum lavamentivorans DS... 36 2.1
CP001110_1074(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 36 2.1
CP001172_1525(CP001172|pid:none) Acinetobacter baumannii AB307-0... 36 2.1
CP000521_2082(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 36 2.1
CR543861_23(CR543861|pid:none) Acinetobacter sp. ADP1 complete g... 35 2.7
AM778958_13(AM778958|pid:none) Microcystis aeruginosa PCC 7806 g... 35 2.7
CP000789_1486(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 35 2.7
CP001001_689(CP001001|pid:none) Methylobacterium radiotolerans J... 35 2.7
AP009552_771(AP009552|pid:none) Microcystis aeruginosa NIES-843 ... 35 2.7
CP000853_813(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ... 35 2.7
AE014188_72(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 35 2.7
CP000820_1414(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 35 3.5
CP001103_757(CP001103|pid:none) Alteromonas macleodii 'Deep ecot... 35 3.5
CP000699_1518(CP000699|pid:none) Sphingomonas wittichii RW1, com... 35 3.5
CP000030_64(CP000030|pid:none) Anaplasma marginale str. St. Mari... 35 3.5
AB014758_3(AB014758|pid:none) Pseudomonas sp. 61-3 genes for PHA... 35 3.5
GQ140302_1(GQ140302|pid:none) Thermus scotoductus strain SA-01 e... 35 3.5
(Q59093) RecName: Full=3-oxoadipate enol-lactonase 1; E... 35 3.5
AE017333_3164(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 35 3.5
CP001108_656(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 35 3.5
FM209186_5447(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 35 4.6
AE016795_1975(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos... 35 4.6
AY596789_1(AY596789|pid:none) Pseudomonas aeruginosa polyhydroxy... 35 4.6
A69463(A69463) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid hyd... 35 4.6
AE004091_5053(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 35 4.6
CP000724_1828(CP000724|pid:none) Alkaliphilus metalliredigens QY... 35 4.6
(Q5A309) RecName: Full=Histone-lysine N-methyltransferase, H3 ly... 34 6.0
FJ207460_2(FJ207460|pid:none) Agulla sp. ATB-2008 tRNA-Cys and t... 34 6.0
CP001016_915(CP001016|pid:none) Beijerinckia indica subsp. indic... 34 6.0
CP000781_1108(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 34 6.0
EF134215_1(EF134215|pid:none) Noctiluca scintillans isolate Nsc-... 34 6.0
CP000413_1226(CP000413|pid:none) Lactobacillus gasseri ATCC 3332... 34 6.0
CP000084_1322(CP000084|pid:none) Candidatus Pelagibacter ubique ... 34 6.0
BC109408_1(BC109408|pid:none) Danio rerio zgc:123305, mRNA (cDNA... 34 6.0
AJ243686_1(AJ243686|pid:none) Neisseria meningitidis oatC gene f... 34 6.0
AM181176_4435(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 34 6.0
AE015451_1369(AE015451|pid:none) Pseudomonas putida KT2440 compl... 34 6.0
CP000490_645(CP000490|pid:none) Paracoccus denitrificans PD1222 ... 34 6.0
CP000744_5718(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 34 6.0
AB020531_3(AB020531|pid:none) Escherichia coli plasmid pTZ3721 g... 34 6.0
U77658_6(U77658|pid:none) Acinetobacter lwoffii K24 CatR (catR),... 34 6.0
AE006470_1234(AE006470|pid:none) Chlorobium tepidum TLS, complet... 34 7.8
CP000927_3841(CP000927|pid:none) Caulobacter sp. K31, complete g... 34 7.8
CP000463_1641(CP000463|pid:none) Rhodopseudomonas palustris BisA... 34 7.8
CP000090_2492(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 34 7.8
AE005673_2394(AE005673|pid:none) Caulobacter crescentus CB15, co... 34 7.8
CP000607_742(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 34 7.8
AM180355_653(AM180355|pid:none) Clostridium difficile 630 comple... 34 7.8
CP000285_756(CP000285|pid:none) Chromohalobacter salexigens DSM ... 34 7.8
CP000076_1301(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 34 7.8
CP001615_634(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 34 7.8
AE014187_550(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 34 7.8
CP000774_2608(CP000774|pid:none) Parvibaculum lavamentivorans DS... 34 7.8
CP000058_367(CP000058|pid:none) Pseudomonas syringae pv. phaseol... 34 7.8
AE016853_5018(AE016853|pid:none) Pseudomonas syringae pv. tomato... 34 7.8
>AC116919_10(AC116919|pid:none) Dictyostelium discoideum chromosome
2 map complement(6245035-6206343) strain AX4, complete
sequence.
Length = 366
Score = 83.2 bits (204), Expect = 1e-14
Identities = 45/109 (41%), Positives = 70/109 (64%), Gaps = 7/109 (6%)
Frame = +2
Query: 23 KLYYEIYGSKDAKNKLMFLNGLSQPTTSLKYQIEYF-KKLDDFQICVFDNRGVCKSN--- 190
K+Y+E + + K++F+ G + QI+YF K D ++ICVFDNRG+ KSN
Sbjct: 33 KIYFETF--VNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDS 90
Query: 191 --SFTYSLKIMALDAIELVK-FLNWNKVNFVGISLGGSACLHLVSLIED 328
S+ +S K MA+DAI+L++ L W+KV+ G+S+GG A +HL S+I +
Sbjct: 91 KYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPE 139
Score = 34.7 bits (78), Expect = 4.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 682 VIASKHDQIVNFEILKK-FSSEINACKLYVADSGHLLTIEDSEFINSTIVKHI 837
VI SK D +V +I KK + + +V + GHL +E+ F N + H+
Sbjct: 254 VINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHV 306
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,558,416,219
Number of extensions: 32505555
Number of successful extensions: 79761
Number of sequences better than 10.0: 146
Number of HSP's gapped: 79722
Number of HSP's successfully gapped: 147
Length of query: 302
Length of database: 1,061,185,681
Length adjustment: 128
Effective length of query: 174
Effective length of database: 642,824,337
Effective search space: 111851434638
Effective search space used: 111851434638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |