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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05566-1
Contig ID Contig-U05566-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05566-1 (Contig-U05566-1Q) /CSM_Contig/Contig-U05566-1Q.Seq.d
CATCATCCCCATCAACTCCACTCAAATCATCACAAGAAAGACCAATTACT
CCAAATAGTTGGAAACCATCTTCAAAATCTGGAACAGCTTGGGATATTTC
AATTAGAATTGTTGGTTTCTTTCAAATTGATGATCATATTGAATATAAAT
TACAAGTAATTTCAAATTCAAATGAATGGTTCGTTTGTAGAAGATATAAT
AACTTTTTAATGTTGGATAAAAAATTAAAAAGTTCCGGAATAATTGATAA
AAAAGATTTAGGTTTGACATTACCACCAAAGAAATTAAAAGTAGCATCCA
ACCAAGTTGCAAAAGCTAGACAATTACCACTTCAAAGTTATCTTGTACAT
TTATTATCAAATTACCAAGGTATTTTTTNTAATAATAATATTGTAAATGT
TTTTCTAAACTCTGAAGTGAATNGTACTNTTTTCCAACATTTTNTTAATA
AAACAAAGTGATAAACCTTTTGATTTTTTTTTATTTGTTTTTCCNCTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
Gap no gap
Contig length 562
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1380677
End point 1380114
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05566
List of clone(s) 

est1=SSJ593E,1,563
Translated Amino Acid sequence 
SSPSTPLKSSQERPITPNSWKPSSKSGTAWDISIRIVGFFQIDDHIEYKLQVISNSNEWF
VCRRYNNFLMLDKKLKSSGIIDKKDLGLTLPPKKLKVASNQVAKARQLPLQSYLVHLLSN
YQGIFXNNNIVNVFLNSEVNXTXFQHFXNKTK**tf*ffficfsxkkkkkkkkkkkkkkk
kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hhphqlhsnhhkkdqllqivgnhlqnleqlgifqlellvsfklmiilninyk*fqiqmng
sfvediitf*cwikn*kvpe*likki*v*hyhqrn*k*hptklqkldnyhfkvilyiyyq
itkvffxiiil*mff*tlk*xvlfsnixlikqsdkpfdfflfvfplkkkkkkkkkkkkkk
kkkkkkk


Frame B:
iipinstqiitrktnysk*letifkiwnslgyfn*ncwflsn**sy*i*itsnfkfk*mv
rl*ki**lfnvg*kikkfrnn**krfrfdittkeikssiqpscks*tittsklsctfiik
lpryfx***yckcfskl*sexyxfptfx**nkvinlliffylffx*kkkkkkkkkkkkkk
kkkkkkk


Frame C:
SSPSTPLKSSQERPITPNSWKPSSKSGTAWDISIRIVGFFQIDDHIEYKLQVISNSNEWF
VCRRYNNFLMLDKKLKSSGIIDKKDLGLTLPPKKLKVASNQVAKARQLPLQSYLVHLLSN
YQGIFXNNNIVNVFLNSEVNXTXFQHFXNKTK**tf*ffficfsxkkkkkkkkkkkkkkk
kkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05566-1 (Contig-U05566-1Q)
/CSM_Contig/Contig-U05566-1Q.Seq.d
         (562 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05566-1 (Contig-U05566-1Q) /CSM_Contig/Conti...   432  e-121
Contig-U11384-1 (Contig-U11384-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U01942-1 (Contig-U01942-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13648-1 (Contig-U13648-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U01623-1 (Contig-U01623-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U12450-1 (Contig-U12450-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11902-1 (Contig-U11902-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11882-1 (Contig-U11882-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11776-1 (Contig-U11776-1Q) /CSM_Contig/Conti...    34  0.15

>Contig-U05566-1 (Contig-U05566-1Q) /CSM_Contig/Contig-U05566-1Q.Seq.d
          Length = 562

 Score =  432 bits (218), Expect = e-121
 Identities = 218/218 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcatccccatcaactccactcaaatcatcacaagaaagaccaattactccaaatagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcatccccatcaactccactcaaatcatcacaagaaagaccaattactccaaatagtt 60

                                                                       
Query: 61  ggaaaccatcttcaaaatctggaacagcttgggatatttcaattagaattgttggtttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggaaaccatcttcaaaatctggaacagcttgggatatttcaattagaattgttggtttct 120

                                                                       
Query: 121 ttcaaattgatgatcatattgaatataaattacaagtaatttcaaattcaaatgaatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcaaattgatgatcatattgaatataaattacaagtaatttcaaattcaaatgaatggt 180

                                                 
Query: 181 tcgtttgtagaagatataataactttttaatgttggat 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcgtttgtagaagatataataactttttaatgttggat 218


 Score =  420 bits (212), Expect = e-118
 Identities = 250/263 (95%)
 Strand = Plus / Plus

                                                                       
Query: 232 gttccggaataattgataaaaaagatttaggtttgacattaccaccaaagaaattaaaag 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gttccggaataattgataaaaaagatttaggtttgacattaccaccaaagaaattaaaag 291

                                                                       
Query: 292 tagcatccaaccaagttgcaaaagctagacaattaccacttcaaagttatcttgtacatt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tagcatccaaccaagttgcaaaagctagacaattaccacttcaaagttatcttgtacatt 351

                                                                       
Query: 352 tattatcaaattaccaaggtattttttntaataataatattgtaaatgtttttctaaact 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tattatcaaattaccaaggtattttttntaataataatattgtaaatgtttttctaaact 411

                                                                       
Query: 412 ctgaagtgaatngtactnttttccaacannnnnnnaataaaacaaagtgataaacctttt 471
           ||||||||||||||||||||||||||||    |  |||||||||||||||||||||||||
Sbjct: 412 ctgaagtgaatngtactnttttccaacattttnttaataaaacaaagtgataaacctttt 471

                                  
Query: 472 gannnnnnnttatttgtttttcc 494
           ||       ||||||||||||||
Sbjct: 472 gatttttttttatttgtttttcc 494


>Contig-U11384-1 (Contig-U11384-1Q) /CSM_Contig/Contig-U11384-1Q.Seq.d
          Length = 1424

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 136 atattgaatataaattacaagtaatt 161
           |||||||||||||||||||| |||||
Sbjct: 318 atattgaatataaattacaattaatt 343


>Contig-U01942-1 (Contig-U01942-1Q) /CSM_Contig/Contig-U01942-1Q.Seq.d
          Length = 305

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 374 tttttntaataataatattgtaaat 398
           ||||| |||||||||||||||||||
Sbjct: 101 tttttataataataatattgtaaat 125


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,179
Number of Sequences: 6905
Number of extensions: 18179
Number of successful extensions: 1235
Number of sequences better than 10.0: 357
length of query: 562
length of database: 5,674,871
effective HSP length: 16
effective length of query: 546
effective length of database: 5,564,391
effective search space: 3038157486
effective search space used: 3038157486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.30
Homology vs DNA 
Query= Contig-U05566-1 (Contig-U05566-1Q) /CSM_Contig/Contig-U05566-1Q.Seq.d
         (562 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116989) Dictyostelium discoideum chromosome 2 map 4545040...   444   0.0    2
(AU074133) Dictyostelium discoideum slug cDNA, clone SSJ593.      432   e-117  1
(C91117) Dictyostelium discoideum slug cDNA, clone SSJ593.        157   6e-34  1
(AC211882) Pongo abelii chromosome UNKNOWN clone CH276-258A1...    50   0.094  1
(AM471921) Vitis vinifera contig VV78X130993.16, whole genom...    36   0.23   2
(EX477538) EST_lsal_evj_798927 lsalevj mixed_tissue_mixed_st...    38   0.28   2
(DE952535) Macropus eugenii DNA, BAC clone: MEB1-151B05_R, 3...    34   0.28   2
(CU784315) A BAC library has been constructed from PN40024 g...    36   0.28   2
(CU694978) H.parasitica DNA sequence from clone HpEmoy2-18A18.     48   0.37   1
(DU213832) 1098553236209 CHORI-243 Ovis aries genomic clone ...    48   0.37   1
(EY322836) CAWX8663.fwd CAWX Helobdella robusta Primary Earl...    48   0.37   1
(AM483703) Vitis vinifera contig VV78X151438.9, whole genome...    34   0.94   2
(EH692998) CCIM5059.b1_E17.ab1 CCI(LMS) chicory Cichorium in...    36   1.0    2
(EL371607) CCEL13625.b1_B23.ab1 CCE(LMS) endive Cichorium en...    36   1.0    2
(EH682447) CCIL7162.b1_C16.ab1 CCI(LMS) chicory Cichorium in...    36   1.0    2
(EH686492) CCIM11294.b1_L15.ab1 CCI(LMS) chicory Cichorium i...    36   1.0    2
(EH688247) CCIM12929.b1_A18.ab1 CCI(LMS) chicory Cichorium i...    36   1.0    2
(EL343029) CCEL11023.b1_M20.ab1 CCE(LMS) endive Cichorium en...    36   1.0    2
(EH672932) CCIL10567.b1_M02.ab1 CCI(LMS) chicory Cichorium i...    36   1.0    2
(EH677726) CCIL2730.b1_C11.ab1 CCI(LMS) chicory Cichorium in...    36   1.0    2
(EH676733) CCIL14490.b1_C24.ab1 CCI(LMS) chicory Cichorium i...    36   1.0    2
(EH677249) CCIL1863.b1_N10.ab1 CCI(LMS) chicory Cichorium in...    36   1.0    2
(EH682844) CCIL7535.b1_M12.ab1 CCI(LMS) chicory Cichorium in...    36   1.0    2
(CU754066) A BAC library has been constructed from PN40024 g...    34   1.1    2
(AC008604) Homo sapiens chromosome 5 clone CTB-109F8, comple...    46   1.2    2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   1.5    15
(AM485840) Vitis vinifera contig VV78X218881.4, whole genome...    46   1.5    1
(AM454210) Vitis vinifera contig VV78X166040.2, whole genome...    46   1.5    1
(AC093505) Homo sapiens chromosome 5 clone CTD-2010M15, comp...    46   1.5    1
(AC091900) Homo sapiens chromosome 5 clone RP11-158K14, comp...    46   1.5    1
(AC218558) Bos taurus clone CH240-312C23, WORKING DRAFT SEQU...    46   1.5    1
(AQ220785) HS_2010_A1_G08_MR CIT Approved Human Genomic Sper...    46   1.5    1
(CU847036) A BAC library has been constructed from PN40024 g...    46   1.5    1
(CU746582) A BAC library has been constructed from PN40024 g...    46   1.5    1
(AC007814) Drosophila melanogaster, chromosome 3R, region 91...    42   1.7    3
(AM456343) Vitis vinifera contig VV78X084495.18, whole genom...    40   1.9    2
(BF647808) NF012C10EC1F1072 Elicited cell culture Medicago t...    40   2.2    2
(CX550264) MAHM-36D_E09_M13R_067.seq MHAM2 Medicago truncatu...    40   2.2    2
(BF644933) NF018H06EC1F1059 Elicited cell culture Medicago t...    40   2.2    2
(AC017759) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    42   2.3    2
(BE802755) sr57b08.y1 Gm-c1051 Glycine max cDNA clone GENOME...    30   2.5    3
(CP000803) Francisella tularensis subsp. holarctica FTNF002-...    36   2.7    12
(BK006741) TPA_reasm: Francisella tularensis subsp. holarcti...    36   2.7    12
(CP000437) Francisella tularensis subsp. holarctica OSU18, c...    36   2.7    12
(AM233362) Francisella tularensis subsp. holarctica LVS comp...    36   2.7    12
(CU633488) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   2.9    2
(AC211154) Zea mays chromosome 7 clone CH201-240N18; ZMMBBc0...    34   2.9    2
(AM478852) Vitis vinifera contig VV78X256637.7, whole genome...    34   3.2    2
(AM456245) Vitis vinifera contig VV78X124504.4, whole genome...    32   3.5    2
(FH608619) CHO_OF4494xd14r1.ab1 CHO_OF4 Nicotiana tabacum ge...    34   3.9    2
(FH739513) CHO_OF5148xa03r1.ab1 CHO_OF5 Nicotiana tabacum ge...    34   3.9    2
(AM440200) Vitis vinifera contig VV78X130382.8, whole genome...    36   3.9    3
(AM428897) Vitis vinifera contig VV78X244248.6, whole genome...    36   4.0    3
(AC146126) Pan troglodytes BAC clone RP43-23E20 from chromos...    40   4.5    3
(AL953847) Zebrafish DNA sequence from clone CH211-255A4 in ...    42   5.7    2
(CT583720) Zebrafish DNA sequence from clone DKEY-18N13 in l...    44   5.8    1
(BV039851) S212P60420FD11.T0 CZECHII/Ei Mus musculus STS gen...    44   5.8    1
(CT030690) Mouse DNA sequence from clone RP23-65J10 on chrom...    44   5.8    1
(AC131678) Mus musculus BAC clone RP23-333L1 from chromosome...    44   5.8    1
(AC110178) Mus musculus chromosome 16, clone RP24-398M18, co...    44   5.8    1
(AC103604) Mus musculus chromosome 3, clone RP23-95A20, comp...    44   5.8    1
(AM475694) Vitis vinifera contig VV78X264268.4, whole genome...    44   5.8    1
(AC013274) Homo sapiens BAC clone RP11-449J2 from 2, complet...    44   5.8    1
(AC156997) Mus musculus chromosome 1 clone RP23-123L12 map 1...    44   5.8    1
(FP236333) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.8    1
(AC223566) Bos taurus clone CH240-466E10, WORKING DRAFT SEQU...    44   5.8    1
(AC223325) Bos taurus clone CH240-422K19, WORKING DRAFT SEQU...    44   5.8    1
(AC222199) Bos taurus clone CH240-411P21, WORKING DRAFT SEQU...    44   5.8    1
(AC219864) Bos taurus clone CH240-320E22, WORKING DRAFT SEQU...    44   5.8    1
(AC218494) Bos taurus clone CH240-314C23, WORKING DRAFT SEQU...    44   5.8    1
(AC218369) Bos taurus clone CH240-285J4, WORKING DRAFT SEQUE...    44   5.8    1
(AC184421) Strongylocentrotus purpuratus clone R3-3114B21, W...    44   5.8    1
(AC179427) Strongylocentrotus purpuratus clone R3-62K4, WORK...    44   5.8    1
(BH458743) BOGHJ36TR BOGH Brassica oleracea genomic clone BO...    44   5.8    1
(AQ993104) RPCI-23-296L7.TJ RPCI-23 Mus musculus genomic clo...    44   5.8    1
(CZ619350) OM__Ba0149E17.f OM__Ba Oryza minuta genomic clone...    44   5.8    1
(AG931641) Drosophila melanogaster DNA, clone: DME1-017D24.F...    44   5.8    1
(BZ492510) BONRK29TF BO_1.6_2_KB_tot Brassica oleracea genom...    44   5.8    1
(AU038732) Dictyostelium discoideum slug cDNA, clone SSL411.       44   5.8    1
(BJ426209) Dictyostelium discoideum cDNA clone:ddv58b09, 5' ...    44   5.8    1
(BJ419264) Dictyostelium discoideum cDNA clone:ddv35f14, 5' ...    44   5.8    1
(BJ370597) Dictyostelium discoideum cDNA clone:ddc54o17, 5' ...    44   5.8    1
(BJ334496) Dictyostelium discoideum cDNA clone:dda46k15, 5' ...    44   5.8    1
(CP000826) Serratia proteamaculans 568, complete genome.           44   5.8    1
(AC073125) Homo sapiens BAC clone RP11-636L15 from 7, comple...    40   5.9    4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   6.0    8
(AC007891) Drosophila melanogaster, chromosome 3R, region 91...    42   6.0    2
(AC145289) Medicago truncatula clone mth2-7g18, complete seq...    40   6.3    4
(AC188330) Microcebus murinus clone CH257-261N10, WORKING DR...    36   6.8    4
(AC187519) Pan troglodytes BAC clone CH251-634N6 from chromo...    40   7.3    4
(BZ467597) BONRH89TF BO_1.6_2_KB_tot Brassica oleracea genom...    40   7.3    2
(AC180991) Strongylocentrotus purpuratus clone R3-3026N21, W...    36   9.3    3
(CF406381) CH3#041_H08T3 Canine heart normalized cDNA Librar...    38   9.6    2
(CX987054) DOG_EST_P35D08 Canis familiaris testis cDNA Canis...    38   9.7    2

>(AC116989) Dictyostelium discoideum chromosome 2 map 4545040-4559643
             strain AX4, complete sequence.
          Length = 14603

 Score =  444 bits (224), Expect(2) = 0.0
 Identities = 232/236 (98%)
 Strand = Plus / Minus


Query: 232   gttccggaataattgataaaaaagatttaggtttgacattaccaccaaagaaattaaaag 291
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11383 gttccggaataattgataaaaaagatttaggtttgacattaccaccaaagaaattaaaag 11324


Query: 292   tagcatccaaccaagttgcaaaagctagacaattaccacttcaaagttatcttgtacatt 351
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11323 tagcatccaaccaagttgcaaaagctagacaattaccacttcaaagttatcttgtacatt 11264


Query: 352   tattatcaaattaccaaggtattttttntaataataatattgtaaatgtttttctaaact 411
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 11263 tattatcaaattaccaaggtattttttataataataatattgtaaatgtttttctaaact 11204


Query: 412   ctgaagtgaatngtactnttttccaacattttnttaataaaacaaagtgataaacc 467
             ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 11203 ctgaagtgaatagtactattttccaacattttattaataaaacaaagtgataaacc 11148

 Score =  432 bits (218), Expect(2) = 0.0
 Identities = 218/218 (100%)
 Strand = Plus / Minus


Query: 1     catcatccccatcaactccactcaaatcatcacaagaaagaccaattactccaaatagtt 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11737 catcatccccatcaactccactcaaatcatcacaagaaagaccaattactccaaatagtt 11678


Query: 61    ggaaaccatcttcaaaatctggaacagcttgggatatttcaattagaattgttggtttct 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11677 ggaaaccatcttcaaaatctggaacagcttgggatatttcaattagaattgttggtttct 11618


Query: 121   ttcaaattgatgatcatattgaatataaattacaagtaatttcaaattcaaatgaatggt 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11617 ttcaaattgatgatcatattgaatataaattacaagtaatttcaaattcaaatgaatggt 11558


Query: 181   tcgtttgtagaagatataataactttttaatgttggat 218
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 11557 tcgtttgtagaagatataataactttttaatgttggat 11520

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 655,629,563
Number of extensions: 45531301
Number of successful extensions: 3550224
Number of sequences better than 10.0: 95
Length of query: 562
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 539
Effective length of database: 102,190,702,835
Effective search space: 55080788828065
Effective search space used: 55080788828065
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 2
Homology vs Protein 
Query= Contig-U05566-1 (Contig-U05566-1Q) /CSM_Contig/Contig-U05566-1Q.Seq.d
         (562 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116989_2(AC116989|pid:none) Dictyostelium discoideum chromosom...   251   1e-65
AF082516_1(AF082516|pid:none) Homo sapiens I-1 receptor candidat...    51   2e-05
BC056900_1(BC056900|pid:none) Homo sapiens nischarin, mRNA (cDNA...    51   2e-05
(Q9Y2I1) RecName: Full=Nischarin; AltName: Full=Imidazoline rece...    51   2e-05
BC038102_1(BC038102|pid:none) Homo sapiens nischarin, mRNA (cDNA...    51   2e-05
AB384069_1(AB384069|pid:none) Synthetic construct DNA, clone: pF...    51   2e-05
AK080441_1(AK080441|pid:none) Mus musculus 7 days neonate cerebe...    48   2e-04
AK086880_1(AK086880|pid:none) Mus musculus 0 day neonate lung cD...    48   2e-04
AK122412_1(AK122412|pid:none) Mus musculus mRNA for mKIAA0975 pr...    48   2e-04
AE013599_559(AE013599|pid:none) Drosophila melanogaster chromoso...    47   3e-04
BX649457_1(BX649457|pid:none) Zebrafish DNA sequence from clone ...    47   5e-04
AK157364_1(AK157364|pid:none) Mus musculus activated spleen cDNA...    46   8e-04
DQ095196_1(DQ095196|pid:none) Mus musculus modulator of Na,K-ATP...    46   8e-04
AK172347_1(AK172347|pid:none) Mus musculus activated spleen cDNA...    46   8e-04
AK150337_1(AK150337|pid:none) Mus musculus bone marrow macrophag...    46   8e-04
AK152058_1(AK152058|pid:none) Mus musculus bone marrow macrophag...    46   8e-04
(Q91WB6) RecName: Full=PX domain-containing protein kinase-like ...    46   8e-04
BC091939_1(BC091939|pid:none) Danio rerio si:ch211-103f16.1, mRN...    45   0.001
BX908397_5(BX908397|pid:none) Zebrafish DNA sequence from clone ...    45   0.001
BC014479_1(BC014479|pid:none) Homo sapiens PX domain containing ...    45   0.002
BC008943_1(BC008943|pid:none) Homo sapiens PX domain containing ...    45   0.002
CR859845_1(CR859845|pid:none) Pongo abelii mRNA; cDNA DKFZp469B2...    45   0.002
(Q6ZN39) RecName: Full=PX domain-containing protein kinase-like ...    45   0.002
AE017351_158(AE017351|pid:none) Cryptococcus neoformans var. neo...    42   0.009
AM430590_12(AM430590|pid:none) Vitis vinifera contig VV78X234759...    38   0.16
BC125699_1(BC125699|pid:none) Xenopus tropicalis sorting nexin 1...    38   0.21
AE013599_2122(AE013599|pid:none) Drosophila melanogaster chromos...    37   0.36
AL731712_1(AL731712|pid:none) Mouse DNA sequence from clone RP23...    36   0.80
(Q5R6Q7) RecName: Full=Sorting nexin-16;  &CR860428_1(CR860428|p...    36   0.80
(Q8C080) RecName: Full=Sorting nexin-16;  &AK032055_1(AK032055|p...    35   1.0
(P57768) RecName: Full=Sorting nexin-16;  &AK290903_1(AK290903|p...    35   1.4
AK166422_1(AK166422|pid:none) Mus musculus mammary gland RCB-052...    35   1.4
AC124952_4(AC124952|pid:none) Medicago truncatula clone mth2-24m...    35   1.4
AE013599_2698(AE013599|pid:none) Drosophila melanogaster chromos...    34   2.3
AY118879_1(AY118879|pid:none) Drosophila melanogaster HL01025 fu...    34   2.3
BX908812_28(BX908812|pid:none) Neurospora crassa DNA linkage gro...    34   2.3
CR382132_83(CR382132|pid:none) Yarrowia lipolytica strain CLIB12...    34   3.0
(P57769) RecName: Full=Sorting nexin-16;                               33   4.0
BX647572_1(BX647572|pid:none) Homo sapiens mRNA; cDNA DKFZp313B0...    33   4.0
AY044654_1(AY044654|pid:none) Homo sapiens sorting nexin SNX23 (...    33   4.0
BX648426_1(BX648426|pid:none) Homo sapiens mRNA; cDNA DKFZp686A1...    33   4.0
AF068746_1(AF068746|pid:none) Rattus norvegicus PIPAS mRNA, comp...    33   4.0
BC054996_1(BC054996|pid:none) Xenopus laevis sorting nexin 2, mR...    33   5.2
CU138540_2(CU138540|pid:none) Zebrafish DNA sequence from clone ...    33   6.8
BC113230_1(BC113230|pid:none) Bos taurus neutrophil cytosolic fa...    32   8.8
T24851(T24851)hypothetical protein T11G6.8 - Caenorhabditis eleg...    32   8.8
AF443792_1(AF443792|pid:none) Bison bison NADPH oxidase componen...    32   8.8
CR380956_275(CR380956|pid:none) Candida glabrata strain CBS138 c...    32   8.8
AF411137_1(AF411137|pid:none) Bison bison NADPH oxidase cytosoli...    32   8.8
AL929358_58(AL929358|pid:none) Plasmodium falciparum strain 3D7,...    32   9.0
AL844508_306(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.0

>AC116989_2(AC116989|pid:none) Dictyostelium discoideum chromosome 2
            map 4545040-4559643 strain AX4, complete sequence.
          Length = 2165

 Score =  251 bits (640), Expect = 1e-65
 Identities = 130/153 (84%), Positives = 132/153 (86%), Gaps = 1/153 (0%)
 Frame = +3

Query: 3    SSPSTPLKSSQERPITPNSWKPSSKSGTAWDISIRIVGFFQIDDHIEYKLQVISNSNEWF 182
            SSPSTPLKSSQERPITPNSWKPSSKSGTAWDISIRIVGFFQIDDHIEYKLQVISNSNEWF
Sbjct: 618  SSPSTPLKSSQERPITPNSWKPSSKSGTAWDISIRIVGFFQIDDHIEYKLQVISNSNEWF 677

Query: 183  VCRRYNNFLMLDKKLKSSGIIDKKDLGLTLPPKKLKVASNQVAKARQLPLQSYLVHLLSN 362
            VCRRYNNFLMLDKKLKSSGIIDKKDLGLTLPPKKLKVASNQVAKARQLPLQSYLVHLLSN
Sbjct: 678  VCRRYNNFLMLDKKLKSSGIIDKKDLGLTLPPKKLKVASNQVAKARQLPLQSYLVHLLSN 737

Query: 363  YQG-XXXXXXXXXXXLNSEVNXTXFQHFXNKTK 458
            YQG             NS +N T   H  N +K
Sbjct: 738  YQGIFYNNNIVATTNSNSSINNT---HLTNVSK 767

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 788,653,143
Number of extensions: 13793038
Number of successful extensions: 39819
Number of sequences better than 10.0: 51
Number of HSP's gapped: 39606
Number of HSP's successfully gapped: 51
Length of query: 187
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 66
Effective length of database: 665,703,473
Effective search space: 43936429218
Effective search space used: 43936429218
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.55  gvh: 0.22  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.10  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U05566-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0