Contig-U05554-1
Contig ID Contig-U05554-1
Contig update 2001. 8.30
Contig sequence
>Contig-U05554-1 (Contig-U05554-1Q) /CSM_Contig/Contig-U05554-1Q.Seq.d
ATTTATTAAAAAAACAATAAAATAAAATAGTATTATAAGTTATTTTTTTT
TATTTTTTTTTATAAAAAGAAATATATTATTATTTAAAAAAAAAAAAAAA
AAAAAAAAAAAATTTAAATCTCAAATACCCCACATTCACCCATTGTTATT
AAACTTCTTATTGTTTGTGTATGTANTTAAANAAAAATNAAAAAATNANA
AAAATAAAATAAAAAAAATAATAAAAAAATAATAAAAAAAAAGAAACAAA
AAAACGTGTGCGTACATGTGGGTTTTTTTTTTTTTTTAACCTCTTTCCAA
ATATATATGTATAAATAAAGTAAATTATTGAAAACAAATAAANTTAATAA
TAATAATAAATAGACTACCACTTTAATAATAAAAAAAAAA

Gap no gap
Contig length 390
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6170061
End point 6169670
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05554
List of clone(s)

est1=SSJ509E,1,391
Translated Amino Acid sequence
fikktik*NSIISYFFLFFFIKRNILLFKKKKKKKKKFKSQIPHIHPLLLNFLLFVYVXK
XKXKNXKNKIKKIIKK**kkrnkktcaymwvffff*plskyicinkvny*kqixliiiin
rlpl***kk


Translated Amino Acid sequence (All Frames)
Frame A:
iy*knnkik*yyklfffiffykkkyiii*kkkkkkkki*isntphspivikllivcvcx*
xkxkkxxk*nkknnkkiikkkkqknvcvhvgffffltsfqiymyk*skllktnkxnnnnk
*tttliikkk


Frame B:
fikktik*NSIISYFFLFFFIKRNILLFKKKKKKKKKFKSQIPHIHPLLLNFLLFVYVXK
XKXKNXKNKIKKIIKK**kkrnkktcaymwvffff*plskyicinkvny*kqixliiiin
rlpl***kk


Frame C:
llkkq*nkivl*viffyffl*keiyyylkkkkkkkknlnlkyptfthcy*tsyclcmxlx
knxkxxkik*kk**knnkkketkkrvrtcgfffffnlfpniyv*ik*iienk*x*****i
dyhfnnkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05554-1 (Contig-U05554-1Q)
/CSM_Contig/Contig-U05554-1Q.Seq.d
(390 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05554-1 (Contig-U05554-1Q) /CSM_Contig/Conti... 125 4e-29
Contig-U05674-1 (Contig-U05674-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U12225-1 (Contig-U12225-1Q) /CSM_Contig/Conti... 42 4e-04
Contig-U01709-1 (Contig-U01709-1Q) /CSM_Contig/Conti... 42 4e-04
Contig-U13501-1 (Contig-U13501-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U08208-1 (Contig-U08208-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U14695-1 (Contig-U14695-1Q) /CSM_Contig/Conti... 38 0.007
Contig-U14348-1 (Contig-U14348-1Q) /CSM_Contig/Conti... 38 0.007
Contig-U13229-1 (Contig-U13229-1Q) /CSM_Contig/Conti... 38 0.007
Contig-U11767-1 (Contig-U11767-1Q) /CSM_Contig/Conti... 38 0.007

>Contig-U05554-1 (Contig-U05554-1Q) /CSM_Contig/Contig-U05554-1Q.Seq.d
Length = 390

Score = 125 bits (63), Expect = 4e-29
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 113 tttaaatctcaaataccccacattcacccattgttattaaacttcttattgtttgtgtat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tttaaatctcaaataccccacattcacccattgttattaaacttcttattgtttgtgtat 172


Query: 173 gta 175
|||
Sbjct: 173 gta 175


Score = 95.6 bits (48), Expect = 3e-20
Identities = 48/48 (100%)
Strand = Plus / Plus


Query: 288 aacctctttccaaatatatatgtataaataaagtaaattattgaaaac 335
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aacctctttccaaatatatatgtataaataaagtaaattattgaaaac 335


Score = 83.8 bits (42), Expect = 1e-16
Identities = 42/42 (100%)
Strand = Plus / Plus


Query: 1 atttattaaaaaaacaataaaataaaatagtattataagtta 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttattaaaaaaacaataaaataaaatagtattataagtta 42


Score = 48.1 bits (24), Expect = 7e-06
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 62 ataaaaagaaatatattattattt 85
||||||||||||||||||||||||
Sbjct: 62 ataaaaagaaatatattattattt 85


Score = 36.2 bits (18), Expect = 0.027
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 255 cgtgtgcgtacatgtggg 272
||||||||||||||||||
Sbjct: 255 cgtgtgcgtacatgtggg 272


>Contig-U05674-1 (Contig-U05674-1Q) /CSM_Contig/Contig-U05674-1Q.Seq.d
Length = 195

Score = 44.1 bits (22), Expect = 1e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 8 aaaaaaacaataaaataaaata 29
||||||||||||||||||||||
Sbjct: 97 aaaaaaacaataaaataaaata 118


Score = 36.2 bits (18), Expect = 0.027
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 8 aaaaaaacaataaaataaaata 29
|||||||||||||||| |||||
Sbjct: 132 aaaaaaacaataaaattaaata 153


Score = 34.2 bits (17), Expect = 0.11
Identities = 26/29 (89%)
Strand = Plus / Plus


Query: 1 atttattaaaaaaacaataaaataaaata 29
|||||||||||||| || | |||||||||
Sbjct: 85 atttattaaaaaaaaaaaacaataaaata 113


>Contig-U12225-1 (Contig-U12225-1Q) /CSM_Contig/Contig-U12225-1Q.Seq.d
Length = 1303

Score = 42.1 bits (21), Expect = 4e-04
Identities = 27/29 (93%)
Strand = Plus / Plus


Query: 1 atttattaaaaaaacaataaaataaaata 29
|||||||||||| | ||||||||||||||
Sbjct: 1240 atttattaaaaataaaataaaataaaata 1268


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,110
Number of Sequences: 6905
Number of extensions: 10110
Number of successful extensions: 2176
Number of sequences better than 10.0: 780
length of query: 390
length of database: 5,674,871
effective HSP length: 16
effective length of query: 374
effective length of database: 5,564,391
effective search space: 2081082234
effective search space used: 2081082234
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.30
Homology vs DNA
Query= Contig-U05554-1 (Contig-U05554-1Q) /CSM_Contig/Contig-U05554-1Q.Seq.d
(390 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC117082) Dictyostelium discoideum chromosome 2 map complem... 125 1e-52 3
(AU074095) Dictyostelium discoideum slug cDNA, clone SSJ509. 125 2e-52 3
(C91257) Dictyostelium discoideum slug cDNA, clone SSJ509. 125 2e-28 2
(CE671947) tigr-gss-dog-17000313762669 Dog Library Canis lup... 58 3e-04 1
(AL590418) Mouse DNA sequence from clone RP23-206I14 on chro... 54 0.004 1
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 44 0.012 3
(CE400869) tigr-gss-dog-17000334684547 Dog Library Canis lup... 42 0.014 2
(ED669982) GM_WBa0102F23.r GM_WBa Glycine max genomic clone ... 52 0.016 1
(BI090960) 602853616F1 NIH_MGC_10 Homo sapiens cDNA clone IM... 52 0.016 1
(AG278469) Mus musculus molossinus DNA, clone:MSMg01-048M18.... 38 0.017 3
(AL844503) Plasmodium falciparum 3D7 chromosome 4. 36 0.037 2
(BV264134) S235P6177FC3.T0 ItalianGreyhound Canis familiaris... 50 0.064 1
(AM486505) Vitis vinifera, whole genome shotgun sequence, co... 50 0.064 1
(AL450405) Human DNA sequence from clone RP11-632C17 on chro... 50 0.064 1
(AC137538) Canis lupus familiaris clone RP81-349K11, WORKING... 50 0.064 1
(AL357511) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 50 0.064 1
(AC173083) Bos taurus clone CH240-279G1, WORKING DRAFT SEQUE... 50 0.064 1
(DU396411) 1098421216699 CHORI-243 Ovis aries genomic clone ... 50 0.064 1
(CK694029) ZF101-P00065-DEPE-F2_B21 GISZF001_ra Danio rerio ... 50 0.064 1
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 44 0.14 3
(AL929223) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 36 0.14 2
(AL672147) Mouse DNA sequence from clone RP23-434N14 on chro... 36 0.15 2
(AC195806) Zea mays chromosome 6 clone CH201-23K8; ZMMBBc002... 34 0.15 2
(BX324201) Zebrafish DNA sequence from clone CH211-143G21 in... 42 0.15 2
(X05074) Plasmodium falciparum exp-1 gene for malaria protei... 36 0.19 2
(DV783991) Hw_liver_28_050721_A08 Bos taurus CF-24-HW liver ... 38 0.19 2
(FE029969) C0009488C02.P1KM13F KN511 Ovis aries efferent gas... 38 0.19 2
(DU258659) 1098574187772 CHORI-243 Ovis aries genomic clone ... 38 0.19 2
(EE862197) 010914OSTA073066HT OSTA Ovis aries cDNA, mRNA seq... 38 0.19 2
(CK980053) 4111679 BARC 9BOV Bos taurus cDNA clone 9BOV40_F2... 38 0.19 2
(CN832137) AGENCOURT_24955682 NIH_MGC_169 Mus musculus cDNA ... 34 0.19 2
(EE854150) 030729OSPA2019017HT OSPA Ovis aries cDNA, mRNA se... 38 0.19 2
(CK965852) 4081185 BARC 9BOV Bos taurus cDNA clone 9BOV19_P1... 38 0.19 2
(BF604761) 270915 MARC 3BOV Bos taurus cDNA 5', mRNA sequence. 38 0.20 2
(AW313671) 9103 MARC 1BOV Bos taurus cDNA 5', mRNA sequence. 38 0.20 2
(BX530027) Zebrafish DNA sequence from clone DKEYP-81G7 in l... 48 0.25 1
(AL772185) Mouse DNA sequence from clone RP23-103G12 on chro... 48 0.25 1
(AM466140) Vitis vinifera contig VV78X154233.7, whole genome... 48 0.25 1
(AC112485) Homo sapiens 3 BAC RP11-776B11 (Roswell Park Canc... 48 0.25 1
(AC119835) Mus musculus clone RP24-381J16, WORKING DRAFT SEQ... 48 0.25 1
(AC107785) Mus musculus clone RP23-8N21, WORKING DRAFT SEQUE... 48 0.25 1
(CU928726) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.25 1
(CU606924) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.25 1
(AC027095) Homo sapiens chromosome 3 clone RP11-776B11 map 3... 48 0.25 1
(CT027684) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.25 1
(AC225464) Medicago truncatula clone mth2-173a7, WORKING DRA... 48 0.25 1
(AC177503) Strongylocentrotus purpuratus clone R3-1027K19, W... 48 0.25 1
(AC173791) Bos taurus clone CH240-230G1, WORKING DRAFT SEQUE... 48 0.25 1
(AC171930) Bos taurus clone CH240-221A3, WORKING DRAFT SEQUE... 48 0.25 1
(AC015788) Homo sapiens clone RP11-2L7, WORKING DRAFT SEQUEN... 48 0.25 1
(AL748207) Danio rerio genomic clone DKEY-21A8, genomic surv... 48 0.25 1
(DE523116) Bombyx mori genomic DNA, Fosmid clone:GBMFno143_f... 48 0.25 1
(AG649244) Macaca fuscata fuscata DNA, clone: MSB2-062F10_R,... 48 0.25 1
(DT654585) adipo-452 Porcine adipogenesis cDNA library Sus s... 48 0.25 1
(AM459339) Vitis vinifera, whole genome shotgun sequence, co... 46 0.44 2
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ... 44 0.50 2
(AC153916) Mus musculus 6 BAC RP23-93D20 (Roswell Park Cance... 32 0.54 2
(AC069254) Homo sapiens chromosome 3 clone RP11-907G24, WORK... 36 0.55 2
(AC105738) Sus scrofa clone RP44-258D7, WORKING DRAFT SEQUEN... 36 0.55 2
(CU861611) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.55 2
(AC105437) Sus scrofa clone RP44-49F11, WORKING DRAFT SEQUEN... 36 0.55 2
(CU929489) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.55 2
(AC108919) Mus musculus chromosome 6, clone RP23-52O21, comp... 32 0.56 2
(AL929289) Zebrafish DNA sequence from clone CH211-107O18. 36 0.57 2
(AC126984) Rattus norvegicus clone CH230-122F24, WORKING DRA... 42 0.69 3
(CJ455096) Macaca fascicularis mRNA, clone: QflA-20864, 5' e... 36 0.71 2
(DU070421) 138143 Tomato HindIII BAC Library Solanum lycoper... 32 0.71 2
(CT344946) Sus scrofa genomic clone CH242-34B15, genomic sur... 36 0.72 2
(BZ536496) OGAKQ35TC ZM2_0.7_1.5_KB Zea mays genomic clone Z... 32 0.72 2
(CE608159) tigr-gss-dog-17000313525457 Dog Library Canis lup... 36 0.72 2
(BZ536501) OGAKQ35TM ZM2_0.7_1.5_KB Zea mays genomic clone Z... 32 0.72 2
(AQ063518) HS_2185_A2_C05_MF CIT Approved Human Genomic Sper... 36 0.73 2
(AC133087) Mus musculus BAC clone RP24-135I21 from chromosom... 46 0.82 2
(AC154215) Mus musculus BAC clone RP24-134E18 from 13, compl... 46 0.89 2
(CU628001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.91 2
(CR855366) Zebrafish DNA sequence from clone CH211-191I13 in... 46 1.0 1
(CR339057) Zebrafish DNA sequence from clone DKEY-264L20 in ... 46 1.0 1
(BX469920) Zebrafish DNA sequence from clone DKEY-237J21 in ... 46 1.0 1
(BX255921) Zebrafish DNA sequence from clone CH211-236K19 in... 46 1.0 1
(AL935300) Zebrafish DNA sequence from clone CH211-241E1 in ... 46 1.0 1
(AL840631) Zebrafish DNA sequence from clone DKEY-210J14. 46 1.0 1
(AF118850) Amsacta albistriga nuclear polyhedrosis virus pol... 46 1.0 1
(AF118112) Amsacta albistriga nuclear polyhedrosis virus lat... 46 1.0 1
(AC115787) Mus musculus chromosome 16, clone RP23-212P1, com... 46 1.0 1
(AM467352) Vitis vinifera contig VV78X160422.4, whole genome... 46 1.0 1
(CS468840) Sequence 31 from Patent EP1748080. 46 1.0 1
(CS468839) Sequence 30 from Patent EP1748080. 46 1.0 1
(CS419317) Sequence 31 from Patent WO2006094836. 46 1.0 1
(CS419316) Sequence 30 from Patent WO2006094836. 46 1.0 1
(CQ870151) Sequence 572 from Patent WO2004074320. 46 1.0 1
(AX356494) Sequence 128 from Patent WO0181622. 46 1.0 1
(AX347027) Sequence 2098 from Patent WO0200928. 46 1.0 1
(GC868536) Sequence 183781 from patent US 6812339. 46 1.0 1
(GC701767) Sequence 17012 from patent US 6812339. 46 1.0 1
(U58510) Chlorarachnion CCMP621 small subunit ribosomal RNA,... 46 1.0 1
(DQ158858) Bigelowiella natans nucleomorph chromosome 3, com... 46 1.0 1
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 46 1.0 1
(AL513498) Homo sapiens chromosome 9 BAC RP11-336O12. 46 1.0 1
(AL512635) Human DNA sequence from clone RP11-15P13 on chrom... 46 1.0 1
(AC092867) Homo sapiens 12p BAC RP11-100C20 (Roswell Park Ca... 46 1.0 1
(AC025919) Homo sapiens chromosome 15 clone RP11-947O24 map ... 46 1.0 1
(AC023796) Homo sapiens 12p BAC RP11-625L16 (Roswell Park Ca... 46 1.0 1
(AC002050) Homo sapiens Chromosome 9p22 Cosmid Clone 213a7, ... 46 1.0 1
(AC157618) Atelerix albiventris clone LB4-417P13, WORKING DR... 46 1.0 1
(AC138053) Felis catus clone RP86-392N5, WORKING DRAFT SEQUE... 46 1.0 1
(AC138052) Felis catus clone RP86-222L20, WORKING DRAFT SEQU... 46 1.0 1
(AC137917) Felis catus clone RP86-459K1, WORKING DRAFT SEQUE... 46 1.0 1
(AC120939) Rattus norvegicus clone CH230-520D9, WORKING DRAF... 46 1.0 1
(AC119066) Canis lupus familiaris clone RP81-15H9, WORKING D... 46 1.0 1
(AC113569) Canis lupus familiaris clone RP81-344O4, WORKING ... 46 1.0 1
(AC107170) Rattus norvegicus clone CH230-204H2, *** SEQUENCI... 46 1.0 1
(AC102181) Mus musculus clone RP24-124O1, LOW-PASS SEQUENCE ... 46 1.0 1
(AC095893) Rattus norvegicus clone CH230-10N8, *** SEQUENCIN... 46 1.0 1
(AC094901) Rattus norvegicus clone CH230-6J12, *** SEQUENCIN... 46 1.0 1
(CU914220) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.0 1
(CU657949) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.0 1
(AC087737) Homo sapiens chromosome 15 clone RP11-947O24 map ... 46 1.0 1
(CU467713) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.0 1
(CU466251) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.0 1
(CU179652) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.0 1
(BX957283) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.0 1
(BX511152) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.0 1
(AL606844) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 1.0 1
(AC221335) Bos taurus clone CH240-403M8, WORKING DRAFT SEQUE... 46 1.0 1
(AC209602) Saimiri boliviensis boliviensis clone CH254-140A1... 46 1.0 1
(AC187987) Canis lupus familiaris chromosome X clone XX-518O... 46 1.0 1
(AC186995) Canis lupus familiaris chromosome X clone XX-386O... 46 1.0 1
(AC173942) Callicebus moloch clone LB5-172A20, WORKING DRAFT... 46 1.0 1
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 46 1.0 1
(FI319781) AdH1178-CPY2-I12TR AdH1 Arachis duranensis genomi... 46 1.0 1
(ER396868) 1095344041156 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.0 1
(EJ477451) 1095403450824 Global-Ocean-Sampling_GS-28-01-01-1... 46 1.0 1
(DX862039) ZMMBLj0012J01.r ZMMBLj Zea mays genomic clone ZMM... 46 1.0 1
(DX431478) BE1029_P14_F IASMA L1 HindIII BAC library Vitis v... 46 1.0 1
(DU521670) 1098609853516 CHORI-243 Ovis aries genomic clone ... 46 1.0 1
(CL888212) abf88b08.x1 Soybean random, unfiltered genomic li... 46 1.0 1
(CE842015) tigr-gss-dog-17000332674935 Dog Library Canis lup... 46 1.0 1
(CE486453) tigr-gss-dog-17000365538293 Dog Library Canis lup... 46 1.0 1
(CE188033) tigr-gss-dog-17000326838606 Dog Library Canis lup... 46 1.0 1
(CC247048) CH261-150H17_RM1.1 CH261 Gallus gallus genomic cl... 46 1.0 1
(BZ899565) CH240_16G12.TJ CHORI-240 Bos taurus genomic clone... 46 1.0 1
(BZ235641) CH230-427J10.TV CHORI-230 Segment 2 Rattus norveg... 46 1.0 1
(DB995550) Bruguiera gymnorhiza mRNA, clone: Bg05-18_A11, 5'... 46 1.0 1
(BX446935) human full-length cDNA 3-PRIME end of clone CL0BB... 46 1.0 1
(GO372385) ctsb1j20 Tomato Seed Library [B] Solanum lycopers... 46 1.0 1
(GE720550) CBUP6386.g1 B.anynana_wing.4-6d_2-10kb Bicyclus a... 46 1.0 1
(FM922974) Brachionus plicatilis EST 5' end, clone sb103P001... 46 1.0 1
(EV425237) 210737596 NVP Nasonia vitripennis cDNA clone 207G... 46 1.0 1
(AY334017) Salmonella enterica serogroup O6,14 rfb gene clus... 46 1.0 1
(AE010299) Methanosarcina acetivorans str. C2A, complete gen... 46 1.0 1
(AC117073) Dictyostelium discoideum chromosome 2 map 6045872... 34 1.3 4
(CW378269) fsbb001f056p11f0 Sorghum methylation filtered lib... 34 1.7 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 1.9 2
(CR847533) Zebrafish DNA sequence from clone DKEY-15G24 in l... 34 2.0 2
(AC150722) Callithrix jacchus clone CH259-244O7, WORKING DRA... 34 2.0 2
(AC192796) Pan troglodytes BAC clone CH251-682H15 from chrom... 34 2.0 2
(AL929146) Zebrafish DNA sequence from clone CH211-117A23. 34 2.0 2
(CT573477) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 2.0 2
(AC150607) Callithrix jacchus clone CH259-296J19, WORKING DR... 34 2.0 2
(AC163266) Rhinolophus ferrumequinum clone VMRC7-85P5, WORKI... 32 2.0 2
(DX537892) GH_MBb0090N11f GH_MBb Gossypium hirsutum genomic ... 38 2.0 2
(CU693374) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 2.0 2
(CU469314) Zebrafish DNA sequence from clone DKEY-208B23 in ... 32 2.1 2
(AL022308) Human DNA sequence from clone RP6-177G12 on chrom... 34 2.1 2
(CW250960) 104_713_11223668_148_35059_074 Sorghum methylatio... 34 2.1 3
(CU019642) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 2.1 2
(CU928057) Zebrafish DNA sequence from clone ZFOS-1512B12 in... 34 2.2 2
(FK923729) EST_lsal_evj_940240 lsalevj mixed_tissue_mixed_st... 34 2.7 2
(FK923728) EST_lsal_evj_956752 lsalevj mixed_tissue_mixed_st... 34 2.7 2
(AG419482) Mus musculus molossinus DNA, clone:MSMg01-290B18.... 34 2.7 2
(FF328913) 280437908 Pea aphid whole body normalized full le... 34 2.7 2
(ED647258) GM_WBa0063D04.f GM_WBa Glycine max genomic clone ... 34 2.7 2
(AC072057) Homo sapiens BAC clone RP11-312C1 from 7, complet... 44 2.7 2
(BX571761) Zebrafish DNA sequence from clone CH211-168I6 in ... 36 2.7 4
(AZ044630) Gm_ISb001_063_D04.F ISU Soybean BAC Library (pBel... 34 2.7 2
(AX349036) Sequence 494 from Patent WO0202807. 44 2.9 2
(AC167859) Bos taurus clone CH240-192M7, WORKING DRAFT SEQUE... 44 3.0 2
(CU914358) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.1 2
(ER653986) SB_BBc228-L05.F SB_BBc Sorghum bicolor genomic 5'... 34 3.2 3
(AC229609) Mustela putorius furo clone CH237-346P7, WORKING ... 42 3.3 2
(EL533587) EST_omor_eva_12740 omoreva mixed_tissue Osmerus m... 34 3.4 3
(BX005211) Zebrafish DNA sequence from clone CH211-128A7 in ... 42 3.6 2
(AC219820) Bos taurus clone CH240-320N1, WORKING DRAFT SEQUE... 42 3.7 2
(CU306815) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.8 2
(AC130934) Rattus norvegicus clone CH230-329G5, *** SEQUENCI... 40 3.8 2
(AC188600) Pan troglodytes BAC clone CH251-658L18 from chrom... 44 3.8 2
(CU929413) Zebrafish DNA sequence from clone CH73-139E7 in l... 44 4.0 1
(CU012044) Zebrafish DNA sequence from clone CH211-223P9 in ... 44 4.0 1
(CT998561) Zebrafish DNA sequence from clone DKEYP-13B9 in l... 44 4.0 1
(CR931819) Zebrafish DNA sequence from clone DKEY-69P21 in l... 44 4.0 1
(CR926461) Zebrafish DNA sequence from clone DKEY-246B13. 44 4.0 1
(CR555290) Zebrafish DNA sequence from clone DKEYP-10A10 in ... 44 4.0 1
(CR550301) Zebrafish DNA sequence from clone DKEY-160K9 in l... 44 4.0 1
(CR354433) Zebrafish DNA sequence from clone DKEY-157G16 in ... 44 4.0 1
(BX901886) Zebrafish DNA sequence from clone CH211-261H19 in... 44 4.0 1
(BX470087) Zebrafish DNA sequence from clone CH211-202A10 in... 44 4.0 1
(BX323039) Zebrafish DNA sequence from clone CH211-145A11 in... 44 4.0 1
(BX322637) Zebrafish DNA sequence from clone DKEY-22A1 in li... 44 4.0 1
(BX088652) Zebrafish DNA sequence from clone DKEY-256M19 in ... 44 4.0 1
(BX000697) Zebrafish DNA sequence from clone CH211-120M13 in... 44 4.0 1
(BC157384) Danio rerio cytoplasmic linker associated protein... 44 4.0 1
(AL929523) Zebrafish DNA sequence from clone CH211-250I3. 44 4.0 1
(AL844207) Zebrafish DNA sequence from clone DKEY-166M19. 44 4.0 1
(AC216792) Gallus gallus BAC clone CH261-96E14 from chromoso... 44 4.0 1
(AY077833) Sheeppox virus A, complete genome. 44 4.0 1
(G10671) human STS CHLC.UTR_04461_U03851.P65103 clone UTR_04... 44 4.0 1
(BV526918) G591P622589FE2.T0 Clint Pan troglodytes verus STS... 44 4.0 1
(BV179096) sqnm103828 Human DNA (Sequenom) Homo sapiens STS ... 44 4.0 1
(CT010470) Mouse DNA sequence from clone RP23-313D12 on chro... 44 4.0 1
(CR974583) Mouse DNA sequence from clone RP23-118G7 on chrom... 44 4.0 1
(AL928823) Mouse DNA sequence from clone RP23-472P9 on chrom... 44 4.0 1
(AL773534) Mouse DNA sequence from clone RP23-183O12 on chro... 44 4.0 1
(AC154646) Mus musculus BAC clone RP23-283B12 from chromosom... 44 4.0 1
(AC154355) Mus musculus BAC clone RP23-220N4 from 13, comple... 44 4.0 1
(AC131989) Mus musculus chromosome 14, clone RP24-186N15, co... 44 4.0 1
(AC123801) Mus musculus BAC clone RP24-374A1 from chromosome... 44 4.0 1
(AC123695) Mus musculus chromosome 15, clone RP23-328C23, co... 44 4.0 1
(AC122538) Mus musculus BAC clone RP24-548J11 from 16, compl... 44 4.0 1
(AC120383) Mus musculus chromosome 12, clone RP24-273A7, com... 44 4.0 1
(AC119886) Mus musculus chromosome 14, clone RP24-218I13, co... 44 4.0 1
(AC115709) Mus musculus chromosome 12, clone RP23-76M3, comp... 44 4.0 1
(BS000023) Pan troglodytes chromosome 22 clone:PTB-018G23, m... 44 4.0 1
(AL954242) Pan troglodytes chromosome 22 BAC PTB-109N16. 44 4.0 1
(AC233996) Pan troglodytes chromosome X clone C_AC6934E24 ma... 44 4.0 1
(AC196494) MACACA MULATTA BAC clone CH250-58H12 from chromos... 44 4.0 1
(AC192856) Pan troglodytes BAC clone CH251-334H19 from chrom... 44 4.0 1
(AC190060) Rhesus Macaque BAC CH250-178E24 () complete sequ... 44 4.0 1
(AC183793) Pan troglodytes BAC clone CH251-668L23 from chrom... 44 4.0 1
(AC171262) Pan troglodytes chromosome X clone RP43-43O10 map... 44 4.0 1
(AC142297) Pan troglodytes BAC clone RP43-98C12 from chromos... 44 4.0 1
(AC087729) Pan troglodytes clone RP43-143F17, complete seque... 44 4.0 1
(EU603323) Populus trichocarpa 4-coumarate:CoA ligase gene, ... 44 4.0 1
(AM471389) Vitis vinifera, whole genome shotgun sequence, co... 44 4.0 1
(AM439355) Vitis vinifera contig VV78X136610.16, whole genom... 44 4.0 1
(AC235324) Glycine max strain Williams 82 clone GM_WBb0080D0... 44 4.0 1
(EA771794) Sequence 78 from patent US 7381808. 44 4.0 1
(DM022347) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 44 4.0 1
(DD437617) Compositions and methods for diagnosis of esohage... 44 4.0 1
(DD080788) Method and nucleic acids for the differentiation ... 44 4.0 1
(DD010735) Diagnosis of known genetic Parameters within the ... 44 4.0 1
(CS623715) Sequence 266 from Patent WO2006071466. 44 4.0 1
(CQ924106) Sequence 5306 from Patent WO2004097052. 44 4.0 1
(CQ334489) Sequence 8583 from Patent WO0157275. 44 4.0 1
(CQ298019) Sequence 9124 from Patent WO0186003. 44 4.0 1
(CQ260356) Sequence 8617 from Patent WO0157277. 44 4.0 1
(CQ222402) Sequence 9241 from Patent WO0157273. 44 4.0 1
(CQ175643) Sequence 7039 from Patent WO0157274. 44 4.0 1
(CQ139009) Sequence 9031 from Patent WO0157276. 44 4.0 1
(CQ100023) Sequence 8882 from Patent WO0157272. 44 4.0 1
(BD309336) Human breast and ovarian cancer associated gene s... 44 4.0 1
(AX659107) Sequence 78 from Patent WO02103041. 44 4.0 1
(AX657833) Sequence 78 from Patent WO02103042. 44 4.0 1
(AX566053) Sequence 25 from Patent WO02077236. 44 4.0 1
(AX349120) Sequence 46 from Patent WO0202808. 44 4.0 1
(AX347399) Sequence 46 from Patent WO0200705. 44 4.0 1
(AX347237) Sequence 2308 from Patent WO0200928. 44 4.0 1
(AX346389) Sequence 1460 from Patent WO0200928. 44 4.0 1
(AX345376) Sequence 447 from Patent WO0200928. 44 4.0 1
(AX344550) Sequence 1 from Patent WO0200932. 44 4.0 1
(GM739507) Sequence 27 from Patent WO2007039291. 44 4.0 1
(GM213854) Sequence 164532 from Patent WO2005116250. 44 4.0 1
(GC700870) Sequence 16115 from patent US 6812339. 44 4.0 1
(CU407197) Pig DNA sequence from clone CH242-307A21 on chrom... 44 4.0 1
(CU407122) Pig DNA sequence from clone CH242-52A15 on chromo... 44 4.0 1
(AC188658) Canis Familiaris chromosome 10, clone XX-480A12, ... 44 4.0 1
(Z82283) Caenorhabditis elegans Cosmid T23G4. 44 4.0 1
(X99344) D.discoideum genes enocoding cytochrome C oxidase, ... 44 4.0 1
(L11172) Plasmodium falciparum RNA polymerase I gene, comple... 44 4.0 1
(CR974470) L.saxatilis DNA sequence from clone CH317-148L22. 44 4.0 1
(AM910994) Plasmodium knowlesi strain H chromosome 12, compl... 44 4.0 1
(AM910990) Plasmodium knowlesi strain H chromosome 8, comple... 44 4.0 1
(AL844508) Plasmodium falciparum 3D7 chromosome 9. 44 4.0 1
(AL844504) Plasmodium falciparum 3D7 chromosome 5. 44 4.0 1
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete... 44 4.0 1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 44 4.0 1
(AB032841) Dictyostelium discoideum aqpA gene for aquaporin,... 44 4.0 1
(AB011497) Bombyx mori apn2 mRNA for aminopeptidase N, compl... 44 4.0 1
(AB008431) Dictyostelium discoideum aqpA mRNA for aquaporin,... 44 4.0 1
(U03851) Human capping protein alpha mRNA, partial cds. 44 4.0 1
(AP000438) Homo sapiens genomic DNA, chromosome 11q clone:CM... 44 4.0 1
(AL590285) Human DNA sequence from clone RP13-46M24 on chrom... 44 4.0 1
(AL365258) Human DNA sequence from clone RP11-448G4 on chrom... 44 4.0 1
(AL161716) Human DNA sequence from clone RP11-266E6 on chrom... 44 4.0 1
(AC233310) Homo sapiens BAC clone RP11-455O3 from chromosome... 44 4.0 1
(AC233287) Homo sapiens BAC clone RP11-286G3 from chromosome... 44 4.0 1
(AC139147) Homo sapiens chromosome 15, clone RP11-107D24, co... 44 4.0 1
(AC117521) Homo sapiens chromosome 5 clone RP11-1015H3, comp... 44 4.0 1
(AC108882) Homo sapiens chromosome X clone RP11-77G22 map p1... 44 4.0 1
(AC092268) Homo sapiens chromosome X clone RP11-185O17 map p... 44 4.0 1
(AC090527) Homo sapiens chromosome 15 clone RP11-96O20 map 1... 44 4.0 1
(AC024267) Homo sapiens chromosome 17, clone RP11-20B24, com... 44 4.0 1
(AC023983) Homo sapiens chromosome 18, clone RP11-621L6, com... 44 4.0 1
(AC010947) Homo sapiens chromosome 18, clone RP11-25L3, comp... 44 4.0 1
(AC010448) Homo sapiens chromosome 5 clone CTD-2237D2, compl... 44 4.0 1
(AC010283) Homo sapiens chromosome 5 clone CTC-555J2, comple... 44 4.0 1
(AC007922) Homo sapiens chromosome 18, clone RP11-178F10, co... 44 4.0 1
(AC005586) Homo sapiens PAC clone RP4-584D14 from 7, complet... 44 4.0 1
(AC002543) Homo sapiens BAC clone CTA-300C3 from 7, complete... 44 4.0 1
(AB209174) Homo sapiens mRNA for actin-related protein 3-bet... 44 4.0 1
(AC162362) Mus musculus chromosome 5 clone RP23-24M15 map 5,... 44 4.0 1
(AC153206) Bos taurus clone CH240-29O2, WORKING DRAFT SEQUEN... 44 4.0 1
(AC147199) Felis catus clone RP86-125C12, WORKING DRAFT SEQU... 44 4.0 1
(AC144594) Danio rerio strain Tue clone CH211-126M8, WORKING... 44 4.0 1
(AC139693) Homo sapiens chromosome 15 clone RP11-769E20 map ... 44 4.0 1
(AC137010) Rattus norvegicus clone CH230-unknown, WORKING DR... 44 4.0 1
(AC136678) Rattus norvegicus clone CH230-16I19, WORKING DRAF... 44 4.0 1
(AC136270) Rattus norvegicus clone CH230-469I1, *** SEQUENCI... 44 4.0 1
(AC136267) Rattus norvegicus clone CH230-439E21, *** SEQUENC... 44 4.0 1
(AC134162) Rattus norvegicus clone CH230-103B9, *** SEQUENCI... 44 4.0 1
(AC130194) Felis catus clone RP86-333O14, WORKING DRAFT SEQU... 44 4.0 1
(AC130069) Rattus norvegicus clone CH230-104D21, *** SEQUENC... 44 4.0 1
(AC129262) Rattus norvegicus clone CH230-297O24, WORKING DRA... 44 4.0 1
(AC128402) Rattus norvegicus clone CH230-432D17, *** SEQUENC... 44 4.0 1
(AC128224) Rattus norvegicus clone CH230-497M8, WORKING DRAF... 44 4.0 1
(AC114843) Rattus norvegicus clone CH230-280D11, WORKING DRA... 44 4.0 1
(AC100984) Mus musculus clone RP23-76J21, LOW-PASS SEQUENCE ... 44 4.0 1
(AC097344) Rattus norvegicus clone CH230-171C13, WORKING DRA... 44 4.0 1
(AC097042) Rattus norvegicus clone CH230-83C3, *** SEQUENCIN... 44 4.0 1
(AC096079) Rattus norvegicus clone CH230-33I23, *** SEQUENCI... 44 4.0 1
(AC095620) Rattus norvegicus clone CH230-8G8, *** SEQUENCING... 44 4.0 1
(AC095613) Rattus norvegicus clone CH230-8B5, *** SEQUENCING... 44 4.0 1
(FP102581) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(FP102498) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(FP102496) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(FP102479) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(FP102443) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(FP017165) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU928826) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU928562) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU915770) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.0 1
(CU915580) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU915563) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU915364) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU855684) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU694631) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU651654) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU607034) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(AC090379) Homo sapiens chromosome 18 clone RP11-886O11 map ... 44 4.0 1
(AC090335) Homo sapiens chromosome 18 clone RP11-893K11 map ... 44 4.0 1
(AC087677) Homo sapiens chromosome 18 clone RP11-863L8 map 1... 44 4.0 1
(AC055862) Homo sapiens chromosome 15 clone RP11-307L23 map ... 44 4.0 1
(CU407181) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU407172) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CU234159) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.0 1
(CU012037) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CT827948) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CT827805) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CT797467) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CT797456) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.0 1
(CT027652) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.0 1
(CR936444) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.0 1
(BX901946) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.0 1
(AP002476) Homo sapiens genomic DNA, chromosome 18q11.2 clon... 44 4.0 1
(AP002423) Homo sapiens genomic DNA, chromosome 18q11.2 clon... 44 4.0 1
(AP001327) Homo sapiens genomic DNA, chromosome 18q11.2, clo... 44 4.0 1
(AP001277) Homo sapiens genomic DNA, chromosome 18q11.2 clon... 44 4.0 1
(AP001276) Homo sapiens genomic DNA, chromosome 11q14 clone:... 44 4.0 1
(AL138777) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 4.0 1
(AC230344) Bos taurus clone CH240-512C1, WORKING DRAFT SEQUE... 44 4.0 1
(AC222884) Bos taurus clone CH240-435K4, WORKING DRAFT SEQUE... 44 4.0 1
(AC219132) Felis catus clone RP86-29P7, WORKING DRAFT SEQUEN... 44 4.0 1
(AC202717) Gallus gallus chromosome Z clone CH261-170C22, WO... 44 4.0 1
(AC197419) Macaca mulatta clone CH250-193J10, WORKING DRAFT ... 44 4.0 1
(AC196563) Homo sapiens chromosome 15 clone WI2-3304N9, *** ... 44 4.0 1
(AC195723) Spermophilus tridecemlineatus clone VMRC20-285M17... 44 4.0 1
(AC195097) Macaca mulatta clone CH250-189K16, WORKING DRAFT ... 44 4.0 1
(AC191963) Macaca mulatta clone CH250-34C10, WORKING DRAFT S... 44 4.0 1
(AC191919) Spermophilus tridecemlineatus clone VMRC20-416E5,... 44 4.0 1
(AC190041) Macaca mulatta clone CH250-408F17, WORKING DRAFT ... 44 4.0 1
(AC190032) Macaca mulatta clone CH250-412M23, WORKING DRAFT ... 44 4.0 1
(AC189935) Macaca mulatta clone CH250-226C15, WORKING DRAFT ... 44 4.0 1
(AC171782) Macaca mulatta clone CH250-373D5, WORKING DRAFT S... 44 4.0 1
(AC171339) Macaca mulatta clone CH250-370E11, WORKING DRAFT ... 44 4.0 1
(AC169599) Bos taurus clone CH240-209C19, WORKING DRAFT SEQU... 44 4.0 1
(AC166521) Bos taurus clone CH240-184F1, WORKING DRAFT SEQUE... 44 4.0 1
(AC165755) Bos taurus clone CH240-163C23, WORKING DRAFT SEQU... 44 4.0 1
(AC021484) Homo sapiens chromosome 5 clone RP11-39B14 map 5,... 44 4.0 1
(AC015717) Homo sapiens chromosome 15 clone RP11-96O20 map 1... 44 4.0 1
(AC009668) Homo sapiens chromosome 18 clone RP11-10L24 map 1... 44 4.0 1
(AZ449121) 1M0247P11F Mouse 10kb plasmid UUGC1M library Mus ... 44 4.0 1
(FI292566) AdH1150-CPY2-A14TF AdH1 Arachis duranensis genomi... 44 4.0 1
(FH377379) CHO_OF4608xf21f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 4.0 1
(FH205201) CHO_OF3139xf09f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 4.0 1
(FH091612) CHO_OF3859xb16r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 4.0 1
(ET916721) CHO_OF460xe02r1.ab1 CHO_OF Nicotiana tabacum geno... 44 4.0 1
(ET742245) CHO_OF248xl15r1.ab1 CHO_OF Nicotiana tabacum geno... 44 4.0 1
(AQ077659) CIT-HSP-2369N14.TR CIT-HSP Homo sapiens genomic c... 44 4.0 1
(AM632786) Entamoeba dispar GSS, clone dispar94e01.q1k. 44 4.0 1
(AM632322) Entamoeba dispar GSS, clone dispar86d08.q1k. 44 4.0 1
(EI919097) VUH2-53J16TV VUUBBa (VUH2) Vigna unguiculata geno... 44 4.0 1
(EI345610) GM_WBc0091E13.f GM_WBc Glycine max genomic clone ... 44 4.0 1
(EI336872) GM_WBc0079B19.r GM_WBc Glycine max genomic clone ... 44 4.0 1
(ED478596) AUAC-aae12a04.g1 Ascaris suum whole genome shotgu... 44 4.0 1
(DX546165) GH_MBb0040K22r GH_MBb Gossypium hirsutum genomic ... 44 4.0 1
(DX530950) GH_MBb0079B05r GH_MBb Gossypium hirsutum genomic ... 44 4.0 1
(DU926545) 345896 Tomato EcoRI BAC Library Solanum lycopersi... 44 4.0 1
(DH447499) Macropus eugenii DNA with T3 primer, fosmid clone... 44 4.0 1
(DH203276) Oryzias latipes Fosmid clone:GOLWFno487_a21, reve... 44 4.0 1
(DE590688) Bombyx mori genomic DNA, Fosmid clone:GBMFno244_i... 44 4.0 1
(DE307195) Bombyx mori genomic DNA, BAC clone:BES_075_P13. 44 4.0 1
(CW941476) TcB22.3_H01_SP6 Tribolium BAC library Tribolium c... 44 4.0 1
(CU840912) A BAC library has been constructed from PN40024 g... 44 4.0 1
(CT323527) Sus scrofa genomic clone CH242-254K13, genomic su... 44 4.0 1
(CT323495) Sus scrofa genomic clone CH242-254J13, genomic su... 44 4.0 1
(CT235106) Sus scrofa genomic clone CH242-264L13, genomic su... 44 4.0 1
(CT208858) Sus scrofa genomic clone CH242-81D22, genomic sur... 44 4.0 1
(CT073759) Sus scrofa genomic clone PigE-110P16, genomic sur... 44 4.0 1
(AG773607) Macaca fuscata fuscata DNA, clone: MSB2-250E09_R,... 44 4.0 1
(AG718076) Macaca fuscata fuscata DNA, clone: MSB2-167B04_R,... 44 4.0 1
(CE738565) tigr-gss-dog-17000330287784 Dog Library Canis lup... 44 4.0 1
(CE730128) tigr-gss-dog-17000329836890 Dog Library Canis lup... 44 4.0 1
(CE616094) tigr-gss-dog-17000313560893 Dog Library Canis lup... 44 4.0 1
(CE352438) tigr-gss-dog-17000361423122 Dog Library Canis lup... 44 4.0 1
(ES372783) Blu_Brain_U1-2_C09 Guppy pDNR_LIB Blue Brain Poec... 44 4.0 1
(EH897486) EBENXNS01B3YLU 8-day Arabidopsis seedlings, aeria... 44 4.0 1
(EH259503) JGI_ACBU616.rev ACBU Phakopsora pachyrhizi infect... 44 4.0 1
(EH226213) JGI_ACAC3480.rev ACAC Phakopsora pachyrhizi TW72-... 44 4.0 1
(AV685920) Homo sapiens cDNA clone:GKCEGD05, 5'end, expresse... 44 4.0 1
(DW629685) CLJ355-P07.x1d-t SHGC-CLJ2 Gasterosteus aculeatus... 44 4.0 1
(DW238323) GH_RTMF_19R_C06_InvR_02Aug04_044_R Root (free) - ... 44 4.0 1
(AU310483) Homo sapiens cDNA, clone:Nbla-23252-2, 3'end. 44 4.0 1
(DR383251) 11443379 CERES-AL46 Arabidopsis thaliana cDNA clo... 44 4.0 1
(DB576893) Homo sapiens hypothalamus cDNA, RIKEN full-length... 44 4.0 1
(DB551129) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB547675) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB547083) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB546905) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB546328) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB545134) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB544310) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB537051) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB534992) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB533568) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB532738) Homo sapiens hippocampus cDNA, RIKEN full-length ... 44 4.0 1
(DB518176) Homo sapiens testis cDNA, RIKEN full-length enric... 44 4.0 1
(DB511842) Homo sapiens testis cDNA, RIKEN full-length enric... 44 4.0 1
(DB508019) Homo sapiens testis cDNA, RIKEN full-length enric... 44 4.0 1
(DB379331) Homo sapiens cDNA clone PLACE1010030, 3' end, mRN... 44 4.0 1
(DB377369) Homo sapiens cDNA clone PLACE1007420, 3' end, mRN... 44 4.0 1
(AU157511) Homo sapiens cDNA clone:PLACE1008047, 3' end, exp... 44 4.0 1
(AU074341) Dictyostelium discoideum slug cDNA, clone SSK428. 44 4.0 1
(AU073606) Dictyostelium discoideum slug cDNA, clone SSH651. 44 4.0 1
(AU072574) Dictyostelium discoideum slug cDNA, clone SSE895. 44 4.0 1
(AU060966) Dictyostelium discoideum slug cDNA, clone SLC418. 44 4.0 1
(AM972702) Sparus aurata EST, clone cDN11P0003E13, 5'-end se... 44 4.0 1
(AM970226) Sparus aurata EST, clone cDN10P0002D07, 5'-end se... 44 4.0 1
(CV646517) EST925270 Field isolate cDNA library Plasmodium v... 44 4.0 1
(CV638268) EST917021 Field isolate cDNA library Plasmodium v... 44 4.0 1
(CO992273) UMC-pd6end1-009-g05 Endometrium gilt D6 of estrou... 44 4.0 1
(AM092564) Lutzomyia longipalpis EST clone NSFM-41h01, seque... 44 4.0 1
(CO031832) EST810216 Coccidioides posadasii spherule cDNA li... 44 4.0 1
(CO031831) EST810215 Coccidioides posadasii spherule cDNA li... 44 4.0 1
(CO013459) EST801794 Coccidioides posadasii spherule cDNA li... 44 4.0 1
(CO013458) EST801793 Coccidioides posadasii spherule cDNA li... 44 4.0 1
(CO007629) EST795964 Coccidioides posadasii spherule cDNA li... 44 4.0 1
(CO007628) EST795963 Coccidioides posadasii spherule cDNA li... 44 4.0 1
(CO005193) EST793528 Coccidioides posadasii spherule cDNA li... 44 4.0 1
(CO004259) EST792594 Coccidioides posadasii spherule cDNA li... 44 4.0 1
(CK499044) rswbb0_009317.y1 swb Bombyx mori cDNA, mRNA seque... 44 4.0 1
(CK498960) rswbb0_009189.y1 swb Bombyx mori cDNA, mRNA seque... 44 4.0 1
(AI983758) wz34h05.x1 NCI_CGAP_Brn53 Homo sapiens cDNA clone... 44 4.0 1
(CD766490) AGENCOURT_14714748 NIH_MGC_190 Mus musculus cDNA ... 44 4.0 1
(CA312561) UI-CF-FN0-afk-d-18-0-UI.s1 UI-CF-FN0 Homo sapiens... 44 4.0 1
(BY926864) Bombyx mori cDNA, clone:E_ET_F1mg_21A05_R_0, 3' e... 44 4.0 1
(BY926862) Bombyx mori cDNA, clone:E_ET_F1mg_20G11_R_0, 3' e... 44 4.0 1
(BY922449) Bombyx mori cDNA, clone:E_EL_ovS0_17A05_F_0, 5' e... 44 4.0 1
(AI922454) wo06f04.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone ... 44 4.0 1
(AI870962) wl69h12.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone... 44 4.0 1
(AI866192) wl27a01.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone I... 44 4.0 1
(AI862778) wj96d10.x1 NCI_CGAP_Lym12 Homo sapiens cDNA clone... 44 4.0 1
(AI750428) cn02h05.x2 Normal Human Trabecular Bone Cells Hom... 44 4.0 1
(AI740699) wg17b08.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie... 44 4.0 1
(AI740603) wg23d02.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie... 44 4.0 1
(AI683525) tx67e07.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone I... 44 4.0 1
(AI590159) to12g12.x1 NCI_CGAP_Ut2 Homo sapiens cDNA clone I... 44 4.0 1
(AI570519) tm77f02.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone... 44 4.0 1
(AI537545) tp04h05.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone ... 44 4.0 1
(AI472729) ta13b07.x1 NCI_CGAP_Lym5 Homo sapiens cDNA clone ... 44 4.0 1
(BX454876) human full-length cDNA 3-PRIME end of clone CS0DF... 44 4.0 1
(BX433873) human full-length cDNA 3-PRIME end of clone CL0BB... 44 4.0 1
(BU676401) UI-CF-DU1-aag-f-12-0-UI.s1 UI-CF-DU1 Homo sapiens... 44 4.0 1
(BU608194) UI-CF-FN0-aew-k-06-0-UI.s1 UI-CF-FN0 Homo sapiens... 44 4.0 1
(BU588070) AGENCOURT_8829822 NIH_MGC_141 Homo sapiens cDNA c... 44 4.0 1
(BU190076) AGENCOURT_7939597 NIH_MGC_67 Homo sapiens cDNA cl... 44 4.0 1
(BU077914) im65a01.x1 HR85 islet Homo sapiens cDNA clone IMA... 44 4.0 1
(BQ937647) AGENCOURT_8960360 NIH_MGC_71 Homo sapiens cDNA cl... 44 4.0 1
(BQ273102) sao17a06.y1 Gm-c1054 Glycine max cDNA clone SOYBE... 44 4.0 1
(BQ273101) sao17a05.y1 Gm-c1054 Glycine max cDNA clone SOYBE... 44 4.0 1
(BQ022522) UI-1-BB1p-akn-a-09-0-UI.s1 NCI_CGAP_Pl6 Homo sapi... 44 4.0 1
(AI355889) qu02h11.x1 NCI_CGAP_Co14 Homo sapiens cDNA clone ... 44 4.0 1
(AI351253) qt47f04.x1 Soares_fetal_lung_NbHL19W Homo sapiens... 44 4.0 1
(AI350431) qt17e04.x1 NCI_CGAP_GC4 Homo sapiens cDNA clone I... 44 4.0 1
(AI308837) qo78a09.x1 NCI_CGAP_Kid5 Homo sapiens cDNA clone ... 44 4.0 1
(AI284378) qi22d02.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clo... 44 4.0 1
(AI275896) ql73f04.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clo... 44 4.0 1
(AI224477) qx06d05.x1 NCI_CGAP_Lym12 Homo sapiens cDNA clone... 44 4.0 1
(AI095888) qb30h11.x1 Soares_pregnant_uterus_NbHPU Homo sapi... 44 4.0 1
(AI088027) ow60f06.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie... 44 4.0 1
(BM145191) TCAAP1D15733 Pediatric acute myelogenous leukemia... 44 4.0 1
(BM145053) TCAAP1D14601 Pediatric acute myelogenous leukemia... 44 4.0 1

>(AC117082) Dictyostelium discoideum chromosome 2 map
complement(6807709-6776860) strain AX4, complete sequence.
Length = 30849

Score = 125 bits (63), Expect(3) = 1e-52
Identities = 63/63 (100%)
Strand = Plus / Plus


Query: 113 tttaaatctcaaataccccacattcacccattgttattaaacttcttattgtttgtgtat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22426 tttaaatctcaaataccccacattcacccattgttattaaacttcttattgtttgtgtat 22485


Query: 173 gta 175
|||
Sbjct: 22486 gta 22488

Score = 83.8 bits (42), Expect(3) = 1e-52
Identities = 42/42 (100%)
Strand = Plus / Plus


Query: 1 atttattaaaaaaacaataaaataaaatagtattataagtta 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22314 atttattaaaaaaacaataaaataaaatagtattataagtta 22355

Score = 48.1 bits (24), Expect(3) = 1e-52
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 62 ataaaaagaaatatattattattt 85
||||||||||||||||||||||||
Sbjct: 22376 ataaaaagaaatatattattattt 22399

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 286,655,286
Number of extensions: 25081651
Number of successful extensions: 3319950
Number of sequences better than 10.0: 638
Length of query: 390
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 367
Effective length of database: 102,190,702,835
Effective search space: 37503987940445
Effective search space used: 37503987940445
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 8. 2
Homology vs Protein
Query= Contig-U05554-1 (Contig-U05554-1Q) /CSM_Contig/Contig-U05554-1Q.Seq.d
(390 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 231,759,272
Number of extensions: 1654261
Number of successful extensions: 1441
Number of sequences better than 10.0: 0
Number of HSP's gapped: 1437
Number of HSP's successfully gapped: 0
Length of query: 130
Length of database: 1,061,185,681
Length adjustment: 95
Effective length of query: 35
Effective length of database: 750,683,121
Effective search space: 26273909235
Effective search space used: 26273909235
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 1.00 gvh: 0.59 alm: 0.33 top: 1.13 tms: 0.00 mit: 0.45 mip: 0.00
nuc: 0.57 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: mitochondrial
16.0 %: cytoplasmic

>> prediction for Contig-U05554-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0