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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05551-1
Contig ID Contig-U05551-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05551-1 (Contig-U05551-1Q) /CSM_Contig/Contig-U05551-1Q.Seq.d
ATCACACTCACAGTAATCACCCACATACATATATATAAAATCATGGAAAA
TAGATTAACCACTAGCTCAATTGTCACTAGACCATTAACCCCAAGATATC
CAGTTATTATTAAAGATCCAACAAATAAGGATGTTATATCTAACTTTAGA
TTAGGTGATCATTTCTTAGCTTTAGGTGTTACAACCATCCTTACATCTGG
TTATTACTATTCAACTTATCTTCATAAACCATCAACTATTTTATGGGGTG
CATTTATTTTACCAACTATGTACCGTTTTAAGTGGTGAACGTGTTTCACA
AAGATTAAAGGGTGTACAAGAAAATCAAAAAGATTGTGCTAAATATGGTA
TTGAATTCACTCAAAATATAACTCCATACAATTTATAAATTACAATACAG
AAAAAAAAAAATAGTAATAATAATAATATAAAAAAAAAAAAAAAAAAAAT
TTCAAGTAAATAATATAAAACATAATTGGTATAATAGCATAAAAAGGAAG
AAAGAAG
Gap no gap
Contig length 507
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4876601
End point 4877108
Strand (PLUS/MINUS) PLUS
Number of clones 8
Number of EST 11
Link to clone list U05551
List of clone(s) 

est1=SSJ780E,1,507
est2=VSF227Z,7,360
est3=VSH883Z,7,354
est4=VSC447E,10,507
est5=VSH881Z,12,353
est6=VSH881F,18,439
est7=VSH883F,18,439
est8=VSF227F,20,439
est9=VSF341Z,43,366
est10=SSJ477Z,175,507
est11=VSJ490F,323,439
Translated Amino Acid sequence 
ITLTVITHIHIYKIMENRLTTSSIVTRPLTPRYPVIIKDPTNKDVISNFRLGDHFLALGV
TTILTSGYYYSTYLHKPSTILWGAFILPTMYRFKW*tcftkikgctrkskrlc*iwy*ih
skynsiqfinyntekkk*****ykkkkkknfk*ii*niigiia*kgrkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ITLTVITHIHIYKIMENRLTTSSIVTRPLTPRYPVIIKDPTNKDVISNFRLGDHFLALGV
TTILTSGYYYSTYLHKPSTILWGAFILPTMYRFKW*tcftkikgctrkskrlc*iwy*ih
skynsiqfinyntekkk*****ykkkkkknfk*ii*niigiia*kgrkk


Frame B:
shsq*sptyiyikswkid*plaqlsldh*pqdiqlllkiqqirmlyltld*viis*l*vl
qpslhlvitiqlifinhqlfygvhlfyqlctvlsgervsqrlkgvqenqkdcakygieft
qnitpynl*itiqkkknsnnnnikkkkkkissk*ykt*lv**hkkeer


Frame C:
hthsnhphtyi*nhgk*inh*lnch*tinpkissyy*rsnk*gcyi*l*ir*sflsfrcy
nhpyiwlllfnlss*tinyfmgciyftnyvpf*vvnvfhkd*rvykkikkivlnmvlnsl
ki*lhtiyklqyrkkkiviiii*kkkkkkfqvnnikhnwynsikrkke
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05551-1 (Contig-U05551-1Q)
/CSM_Contig/Contig-U05551-1Q.Seq.d
         (507 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05551-1 (Contig-U05551-1Q) /CSM_Contig/Conti...   793  0.0
Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U11252-1 (Contig-U11252-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U09397-1 (Contig-U09397-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U09227-1 (Contig-U09227-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U08887-1 (Contig-U08887-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U06778-1 (Contig-U06778-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U05489-1 (Contig-U05489-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U02713-1 (Contig-U02713-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U14905-1 (Contig-U14905-1Q) /CSM_Contig/Conti...    34  0.14

>Contig-U05551-1 (Contig-U05551-1Q) /CSM_Contig/Contig-U05551-1Q.Seq.d
          Length = 507

 Score =  793 bits (400), Expect = 0.0
 Identities = 400/400 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcacactcacagtaatcacccacatacatatatataaaatcatggaaaatagattaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcacactcacagtaatcacccacatacatatatataaaatcatggaaaatagattaacc 60

                                                                       
Query: 61  actagctcaattgtcactagaccattaaccccaagatatccagttattattaaagatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  actagctcaattgtcactagaccattaaccccaagatatccagttattattaaagatcca 120

                                                                       
Query: 121 acaaataaggatgttatatctaactttagattaggtgatcatttcttagctttaggtgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaaataaggatgttatatctaactttagattaggtgatcatttcttagctttaggtgtt 180

                                                                       
Query: 181 acaaccatccttacatctggttattactattcaacttatcttcataaaccatcaactatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acaaccatccttacatctggttattactattcaacttatcttcataaaccatcaactatt 240

                                                                       
Query: 241 ttatggggtgcatttattttaccaactatgtaccgttttaagtggtgaacgtgtttcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttatggggtgcatttattttaccaactatgtaccgttttaagtggtgaacgtgtttcaca 300

                                                                       
Query: 301 aagattaaagggtgtacaagaaaatcaaaaagattgtgctaaatatggtattgaattcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagattaaagggtgtacaagaaaatcaaaaagattgtgctaaatatggtattgaattcac 360

                                                   
Query: 361 tcaaaatataactccatacaatttataaattacaatacag 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaaaatataactccatacaatttataaattacaatacag 400


 Score =  115 bits (58), Expect = 5e-26
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                     
Query: 450 tttcaagtaaataatataaaacataattggtataatagcataaaaaggaagaaagaag 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tttcaagtaaataatataaaacataattggtataatagcataaaaaggaagaaagaag 507


>Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Contig-U11869-1Q.Seq.d
          Length = 2237

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 412 tagtaataataataatat 429
           ||||||||||||||||||
Sbjct: 762 tagtaataataataatat 779


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 416  aataataataatat 429
            ||||||||||||||
Sbjct: 2102 aataataataatat 2115


>Contig-U11252-1 (Contig-U11252-1Q) /CSM_Contig/Contig-U11252-1Q.Seq.d
          Length = 1418

 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 457 taaataatataaaacata 474
           ||||||||||||||||||
Sbjct: 370 taaataatataaaacata 387


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,487
Number of Sequences: 6905
Number of extensions: 21487
Number of successful extensions: 9671
Number of sequences better than 10.0: 1691
length of query: 507
length of database: 5,674,871
effective HSP length: 16
effective length of query: 491
effective length of database: 5,564,391
effective search space: 2732115981
effective search space used: 2732115981
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.30
Homology vs DNA 
Query= Contig-U05551-1 (Contig-U05551-1Q) /CSM_Contig/Contig-U05551-1Q.Seq.d
         (507 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91181) Dictyostelium discoideum slug cDNA, clone SSJ780.        535   0.0    3
(AU262571) Dictyostelium discoideum vegetative cDNA clone:VS...   523   0.0    3
(AU264899) Dictyostelium discoideum vegetative cDNA clone:VS...   749   0.0    1
(AU268122) Dictyostelium discoideum vegetative cDNA clone:VS...   507   0.0    2
(AU268118) Dictyostelium discoideum vegetative cDNA clone:VS...   507   0.0    2
(AU268119) Dictyostelium discoideum vegetative cDNA clone:VS...   490   e-173  2
(AU264900) Dictyostelium discoideum vegetative cDNA clone:VS...   498   e-171  2
(AU268123) Dictyostelium discoideum vegetative cDNA clone:VS...   490   e-170  2
(AU265080) Dictyostelium discoideum vegetative cDNA clone:VS...   396   e-143  2
(C91234) Dictyostelium discoideum slug cDNA, clone SSJ477.        252   e-142  3
(AU270006) Dictyostelium discoideum vegetative cDNA clone:VS...   129   1e-25  1
(AC124215) Medicago truncatula clone mth2-32m6, complete seq...    50   0.013  4
(AJ235270) Rickettsia prowazekii strain Madrid E, complete g...    40   0.063  6
(AC155893) Medicago truncatula chromosome 7 clone mth2-65e4,...    50   0.085  1
(AC128063) Rattus norvegicus clone CH230-12C12, *** SEQUENCI...    50   0.085  1
(AC115167) Rattus norvegicus clone CH230-160B10, *** SEQUENC...    38   0.19   2
(CX072891) UCRCS08_2G12_b Parent Washington Navel Orange Cal...    34   0.25   2
(AY201793) AY201793 Arabidopsis thaliana Landsberg DNA Arabi...    40   0.28   2
(AL088692) Arabidopsis thaliana genome survey sequence SP6 e...    40   0.36   2
(AQ958857) LEREF27TF LERE Arabidopsis thaliana genomic clone...    40   0.41   2
(AQ958860) LEREF28TR LERE Arabidopsis thaliana genomic clone...    40   0.42   2
(CR450773) Zebrafish DNA sequence from clone DKEY-204N14 in ...    38   0.51   5
(AC233213) Solanum tuberosum chromosome 6 clone RHPOTKEY065C...    40   0.55   3
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ...    38   0.63   9
(CP000847) Rickettsia akari str. Hartford, complete genome.        32   0.64   2
(FB571369) Sequence 236 from Patent EP1865317.                     34   0.67   5
(AC170733) Sorex araneus clone SA_Ba-192K23, WORKING DRAFT S...    38   0.75   3
(AL162491) Human DNA sequence from clone RP11-103D20 on chro...    38   0.90   3
(CU928471) S.lycopersicum DNA sequence from clone LE_HBa-332...    42   1.1    4
(BX005240) Mouse DNA sequence from clone RP23-185M16 on chro...    46   1.3    1
(AC121781) Mus musculus BAC clone RP23-363D24 from chromosom...    46   1.3    1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    46   1.3    1
(AC218892) Callorhinchus milii clone 161D4, WORKING DRAFT SE...    38   1.3    7
(AC162527) Mus musculus BAC clone RP23-30M17 from chromosome...    36   1.4    4
(AC212304) Solanum lycopersicum chromosome 05 clone C05HBa03...    42   1.6    4
(AC079561) Mus musculus clone RP23-45N22, WORKING DRAFT SEQU...    44   2.1    3
(CR376845) Zebrafish DNA sequence from clone CH211-244C8 in ...    34   2.2    6
(DT419067) JGI_CABJ1947.rev NIH_XGC_tropSki1 Xenopus (Silura...    36   2.2    2
(AC232007) Solanum tuberosum chromosome 5 clone RH024N07, **...    38   2.5    3
(AX345955) Sequence 1026 from Patent WO0200928.                    34   2.7    3
(CA301840) taa08h08.y1 Hydra cDNA library Hydra magnipapilla...    32   3.3    3
(BX640400) Mouse DNA sequence from clone RP23-294N21 on chro...    36   3.3    3
(CX672846) UCRCS10_19F11_b Madame Vinous Sweet Orange Multip...    34   3.4    2
(CV714263) UCRCS08_0004A10_f Parent Washington Navel Orange ...    34   3.5    2
(EY735173) CS00-C3-704-102-D02-CT.F Sweet orange fruit, deve...    34   3.5    2
(CN192319) UCRCS06_0006L07_f Washington Navel Orange Stored ...    34   3.5    2
(CN187423) UCRCS05_0004G23_f Washington Navel Orange Stored ...    34   3.5    2
(FC922907) KN0AAM3AG11RM1 SLH Citrus sinensis cDNA clone KN0...    34   3.5    2
(EX447753) Volcani_8_11_H5 Volcani08 Citrus reticulata x Cit...    34   3.6    2
(CU929606) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.8    4
(AP010260) Solanum lycopersicum DNA, chromosome 8, clone: C0...    42   4.1    2
(AX344554) Sequence 5 from Patent WO0200932.                       36   4.1    6
(AC146613) Mus musculus BAC clone RP23-36P1 from chromosome ...    36   4.2    3
(FP067337) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.9    4
(CR405703) Zebrafish DNA sequence from clone DKEYP-52E4 in l...    44   5.2    1
(AL807242) Mouse DNA sequence from clone RP23-152G19 on chro...    44   5.2    1
(AC187103) Mus musculus BAC clone RP23-370B22 from chromosom...    44   5.2    1
(AC163667) Mus musculus BAC clone RP23-53N20 from chromosome...    44   5.2    1
(AC132427) Mus musculus BAC clone RP23-326N11 from chromosom...    44   5.2    1
(AC210375) Pongo abelii BAC clone CH276-149G11 from chromoso...    44   5.2    1
(AP010277) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   5.2    1
(AM455134) Vitis vinifera contig VV78X174645.7, whole genome...    44   5.2    1
(AC155003) Bos taurus clone CH240-36J21, WORKING DRAFT SEQUE...    44   5.2    1
(AC153403) Bos taurus clone CH240-18N21, WORKING DRAFT SEQUE...    44   5.2    1
(AC152594) Bos taurus clone CH240-5K7, WORKING DRAFT SEQUENC...    44   5.2    1
(AC109961) Rattus norvegicus clone CH230-319C23, WORKING DRA...    44   5.2    1
(CU915427) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    1
(CU302241) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    1
(CU210891) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    1
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    44   5.2    1
(AC214192) Macaca mulatta clone CH250-572O6, WORKING DRAFT S...    44   5.2    1
(AC186102) Microcebus murinus clone CH257-321O15, WORKING DR...    44   5.2    1
(AC170955) Bos taurus clone CH240-257K15, WORKING DRAFT SEQU...    44   5.2    1
(AC169618) Bos taurus clone CH240-183B6, WORKING DRAFT SEQUE...    44   5.2    1
(AC164869) Bos taurus clone CH240-88C8, WORKING DRAFT SEQUEN...    44   5.2    1
(AC163230) Bos taurus clone CH240-132D12, WORKING DRAFT SEQU...    44   5.2    1
(FI273064) CccaBb065-B15JF CccABb Cajanus cajan genomic clon...    44   5.2    1
(EK005024) 1092344122902 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.2    1
(EK004929) 1092344120982 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.2    1
(EJ259933) 1095349032209 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.2    1
(CT290709) Sus scrofa genomic clone CH242-372M10, genomic su...    44   5.2    1
(CE315745) tigr-gss-dog-17000361056743 Dog Library Canis lup...    44   5.2    1
(CV805273) AGENCOURT_36115008 NIH_XGC_tropKid1 Xenopus (Silu...    44   5.2    1
(GR199131) CBPI3252.g1 CBPI Mimulus lewisii floral buds (L) ...    44   5.2    1
(FD698463) lk_hhL4_0004f07.pDNRF2 lk_hhL4 Hippoglossus hippo...    44   5.2    1
(CP000382) Clostridium novyi NT, complete genome.                  44   5.2    1
(CR936260) Zebrafish DNA sequence from clone DKEY-16H22 in l...    32   5.6    6
(CU467722) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   6.4    2
(FH334919) CHO_OF4590xh24r1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   6.8    2
(AC025065) Homo sapiens chromosome 1 clone RP11-182K2 map 1,...    34   7.5    5
(CU468840) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   7.7    4
(AC022101) Homo sapiens chromosome 5 clone CTC-210G5, comple...    36   7.8    6
(BZ476170) BONGD69TR BO_1.6_2_KB_tot Brassica oleracea genom...    36   8.1    2
(ER374994) 1093039000133 Global-Ocean-Sampling_GS-34-01-01-1...    38   8.4    2
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete...    38   8.6    7
(AC179441) Strongylocentrotus purpuratus clone R3-63C16, WOR...    36   9.9    4

>(C91181) Dictyostelium discoideum slug cDNA, clone SSJ780.
          Length = 506

 Score =  535 bits (270), Expect(3) = 0.0
 Identities = 272/273 (99%)
 Strand = Plus / Plus


Query: 1   atcacactcacagtaatcacccacatacatatatataaaatcatggaaaatagattaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcacactcacagtaatcacccacatacatatatataaaatcatggaaaatagattaacc 60


Query: 61  actagctcaattgtcactagaccattaaccccaagatatccagttattattaaagatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  actagctcaattgtcactagaccattaaccccaagatatccagttattattaaagatcca 120


Query: 121 acaaataaggatgttatatctaactttagattaggtgatcatttcttagctttaggtgtt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaaataaggatgttatatctaactttagattaggtgatcatttcttagctttaggtgtn 180


Query: 181 acaaccatccttacatctggttattactattcaacttatcttcataaaccatcaactatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acaaccatccttacatctggttattactattcaacttatcttcataaaccatcaactatt 240


Query: 241 ttatggggtgcatttattttaccaactatgtac 273
           |||||||||||||||||||||||||||||||||
Sbjct: 241 ttatggggtgcatttattttaccaactatgtac 273

 Score =  252 bits (127), Expect(3) = 0.0
 Identities = 127/127 (100%)
 Strand = Plus / Plus


Query: 274 cgttttaagtggtgaacgtgtttcacaaagattaaagggtgtacaagaaaatcaaaaaga 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cgttttaagtggtgaacgtgtttcacaaagattaaagggtgtacaagaaaatcaaaaaga 332


Query: 334 ttgtgctaaatatggtattgaattcactcaaaatataactccatacaatttataaattac 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttgtgctaaatatggtattgaattcactcaaaatataactccatacaatttataaattac 392


Query: 394 aatacag 400
           |||||||
Sbjct: 393 aatacag 399

 Score =  115 bits (58), Expect(3) = 0.0
 Identities = 58/58 (100%)
 Strand = Plus / Plus


Query: 450 tttcaagtaaataatataaaacataattggtataatagcataaaaaggaagaaagaag 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttcaagtaaataatataaaacataattggtataatagcataaaaaggaagaaagaag 505

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 637,036,037
Number of extensions: 40442738
Number of successful extensions: 4191151
Number of sequences better than 10.0: 98
Length of query: 507
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 484
Effective length of database: 102,190,702,835
Effective search space: 49460300172140
Effective search space used: 49460300172140
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 2
Homology vs Protein 
Query= Contig-U05551-1 (Contig-U05551-1Q) /CSM_Contig/Contig-U05551-1Q.Seq.d
         (507 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001132_2236(CP001132|pid:none) Acidithiobacillus ferrooxidans ...    33   3.9
AY365059_1(AY365059|pid:none) Chlamydomonas reinhardtii NADH:ubi...    33   5.3
EF589106_1(EF589106|pid:none) American grass carp reovirus strai...    32   9.0
AK221209_1(AK221209|pid:none) Arabidopsis thaliana mRNA for hypo...    32   9.0

>CP001132_2236(CP001132|pid:none) Acidithiobacillus ferrooxidans
           ATCC 53993, complete genome.
           &CP001219_2534(CP001219|pid:none)
          Length = 372

 Score = 33.1 bits (74), Expect = 3.9
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 248 VHLFYQLCTVLSGERVSQRLKGVQENQKDCAKYGIEFTQNITPY 379
           +H+F  LC V + E V Q L+ +QEN + C + G  +    +PY
Sbjct: 103 LHVFAGLCAVDTPEHVEQMLRALQENGQVCTRMG-AYKPRTSPY 145

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 770,080,816
Number of extensions: 14220899
Number of successful extensions: 42236
Number of sequences better than 10.0: 4
Number of HSP's gapped: 42230
Number of HSP's successfully gapped: 4
Length of query: 169
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 50
Effective length of database: 672,240,369
Effective search space: 33612018450
Effective search space used: 33612018450
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.88  gvh: 0.43  alm: 0.44  top: 0.60  tms: 0.00  mit: 0.29  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U05551-1 is nuc
VS (DIR, S) 6
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0