>Contig-U05543-1 (Contig-U05543-1Q) /CSM_Contig/Contig-U05543-1Q.Seq.d
AGAATTAAGGAAAAATATTTATCAGTCAATTTATAATGATGATAATTGTT
CACCATTGATTAACCAAATTAGATCATCAACAGGATCAGAATATGAATAT
TTATTACAAGATAAATTATTTAAATTGAATATACCATATTTAACAGAGAG
TCAATTAAGGAAGGATGGGTATCCAAAAACACCAGATATTAAATTAGAGA
TTCCAATCTCTTTTAAAGGATTTGTAATTAATTGGATTGAAAGTAAAGCT
TCATTTTGTGATGATAATAATTTATTAATAACCAGGGATCAAATAATTGG
TTATAGATATAGATATGGACCTGGTTTGGCAATTTATTGGTTTGGTTACA
TTGACGATTTATATTATTTGCTAGATGATGGTGTGTATATTACTGATAAA
TTTTCTGATATGGAAGATATCGATATTCTATATTATGGGGGGAA

est1=SSJ403F,1,445

ELRKNIYQSIYNDDNCSPLINQIRSSTGSEYEYLLQDKLFKLNIPYLTESQLRKDGYPKT
PDIKLEIPISFKGFVINWIESKASFCDDNNLLITRDQIIGYRYRYGPGLAIYWFGYIDDL
YYLLDDGVYITDKFSDMEDIDILYYGG

Frame A:
rikekylsvnl****lftid*pn*iinriri*ifitr*ii*ieytifnresikegwvskn
try*irdsnlf*ricn*ld*k*sfil****finnqgsnnwl*i*iwtwfgnllvwlh*rf
ilfar*wcvyy**if*ygryrysilwge


Frame B:
ELRKNIYQSIYNDDNCSPLINQIRSSTGSEYEYLLQDKLFKLNIPYLTESQLRKDGYPKT
PDIKLEIPISFKGFVINWIESKASFCDDNNLLITRDQIIGYRYRYGPGLAIYWFGYIDDL
YYLLDDGVYITDKFSDMEDIDILYYGG


Frame C:
n*gkifisqfimmiivhh*ltkldhqqdqnmniyykinyln*iyhi*qrvn*grmgiqkh
qiln*rfqsllkdl*liglkvklhfvmiiiy**pgik*lvididmdlvwqfiglvtltiy
iic*mmvcillinfliwkisifyimgg

Query= Contig-U05543-1 (Contig-U05543-1Q)
/CSM_Contig/Contig-U05543-1Q.Seq.d
         (444 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05543-1 (Contig-U05543-1Q) /CSM_Contig/Conti...   880  0.0
Contig-U13810-1 (Contig-U13810-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U12645-1 (Contig-U12645-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U09732-1 (Contig-U09732-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U09102-1 (Contig-U09102-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U14706-1 (Contig-U14706-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U13778-1 (Contig-U13778-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U13486-1 (Contig-U13486-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U13190-1 (Contig-U13190-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U00892-1 (Contig-U00892-1Q) /CSM_Contig/Conti...    30  1.9

>Contig-U05543-1 (Contig-U05543-1Q) /CSM_Contig/Contig-U05543-1Q.Seq.d
          Length = 444

 Score =  880 bits (444), Expect = 0.0
 Identities = 444/444 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaattaaggaaaaatatttatcagtcaatttataatgatgataattgttcaccattgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agaattaaggaaaaatatttatcagtcaatttataatgatgataattgttcaccattgat 60

                                                                       
Query: 61  taaccaaattagatcatcaacaggatcagaatatgaatatttattacaagataaattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaccaaattagatcatcaacaggatcagaatatgaatatttattacaagataaattatt 120

                                                                       
Query: 121 taaattgaatataccatatttaacagagagtcaattaaggaaggatgggtatccaaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaattgaatataccatatttaacagagagtcaattaaggaaggatgggtatccaaaaac 180

                                                                       
Query: 181 accagatattaaattagagattccaatctcttttaaaggatttgtaattaattggattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accagatattaaattagagattccaatctcttttaaaggatttgtaattaattggattga 240

                                                                       
Query: 241 aagtaaagcttcattttgtgatgataataatttattaataaccagggatcaaataattgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagtaaagcttcattttgtgatgataataatttattaataaccagggatcaaataattgg 300

                                                                       
Query: 301 ttatagatatagatatggacctggtttggcaatttattggtttggttacattgacgattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttatagatatagatatggacctggtttggcaatttattggtttggttacattgacgattt 360

                                                                       
Query: 361 atattatttgctagatgatggtgtgtatattactgataaattttctgatatggaagatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atattatttgctagatgatggtgtgtatattactgataaattttctgatatggaagatat 420

                                   
Query: 421 cgatattctatattatggggggaa 444
           ||||||||||||||||||||||||
Sbjct: 421 cgatattctatattatggggggaa 444


>Contig-U13810-1 (Contig-U13810-1Q) /CSM_Contig/Contig-U13810-1Q.Seq.d
          Length = 548

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  aatttataatgatgataat 46
           |||||||||||||||||||
Sbjct: 509 aatttataatgatgataat 527


>Contig-U12645-1 (Contig-U12645-1Q) /CSM_Contig/Contig-U12645-1Q.Seq.d
          Length = 838

 Score = 36.2 bits (18), Expect = 0.031
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 39  atgataattgttcaccat 56
           ||||||||||||||||||
Sbjct: 153 atgataattgttcaccat 136


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9635
Number of Sequences: 6905
Number of extensions: 9635
Number of successful extensions: 1234
Number of sequences better than 10.0: 423
length of query: 444
length of database: 5,674,871
effective HSP length: 16
effective length of query: 428
effective length of database: 5,564,391
effective search space: 2381559348
effective search space used: 2381559348
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U05543-1 (Contig-U05543-1Q) /CSM_Contig/Contig-U05543-1Q.Seq.d
         (444 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU074055) Dictyostelium discoideum slug cDNA, clone SSJ403.      476   e-130  1
(GO123462) CAGA20969.fwd CAGA Alvinella pompejana Normalized...    50   1e-07  2
(GO107945) CAFZ7778.fwd CAFZ Alvinella pompejana Incyte regu...    50   1e-07  2
(GO123461) CAGA20969.rev CAGA Alvinella pompejana Normalized...    50   1e-07  2
(GO107944) CAFZ7778.rev CAFZ Alvinella pompejana Incyte regu...    50   1e-07  2
(GO162865) CAGA40243.rev CAGA Alvinella pompejana Normalized...    50   1e-07  2
(FF951327) CBWU81328.g1 Yutaka Satou unpublished cDNA librar...    36   4e-04  3
(FF786526) XABT83810.rev Gateway compatible cien cDNA librar...    36   0.001  3
(ES390095) MUS02-F09.x1d-t SHGC-MUS Mytilus californianus cD...    48   0.002  2
(ES395628) MUS02-F09.y1d-s SHGC-MUS Mytilus californianus cD...    48   0.002  2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   0.006  8
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete...    34   0.007  13
(FF688345) XABT101859.rev Gateway compatible cien cDNA libra...    36   0.014  3
(FF694311) XABT105756.rev Gateway compatible cien cDNA libra...    36   0.014  3
(FK210620) XABT217485.g1 Gateway compatible cien cDNA librar...    36   0.015  3
(AV861890) Ciona intestinalis cDNA, clone:rcieg31h09, 3' end...    36   0.015  3
(FK140674) XABT174287.g1 Gateway compatible cien cDNA librar...    36   0.015  3
(AV888701) Ciona intestinalis cDNA, clone:rcicl30i23, 3' end...    36   0.016  3
(FK188468) XABT203707.g1 Gateway compatible cien cDNA librar...    36   0.016  3
(FK136866) XABT171961.g1 Gateway compatible cien cDNA librar...    36   0.016  3
(FF760214) XABT66321.rev Gateway compatible cien cDNA librar...    36   0.016  3
(FF760218) XABT66323.rev Gateway compatible cien cDNA librar...    36   0.017  3
(FF715984) XABT34802.rev Gateway compatible cien cDNA librar...    36   0.017  3
(AV859512) Ciona intestinalis cDNA, clone:rcicl17h22, 3' end...    36   0.017  3
(FK052117) XABT119140.g1 Gateway compatible cien cDNA librar...    36   0.018  3
(FF796969) XABT90716.rev Gateway compatible cien cDNA librar...    36   0.018  3
(BW077050) Ciona intestinalis cDNA, clone:rcieg071i01, 3' en...    36   0.018  3
(FK051437) XABT118732.g1 Gateway compatible cien cDNA librar...    36   0.018  3
(FF724566) XABT40418.rev Gateway compatible cien cDNA librar...    36   0.018  3
(FK097068) XABT146613.g1 Gateway compatible cien cDNA librar...    36   0.018  3
(FK061991) XABT125056.g1 Gateway compatible cien cDNA librar...    36   0.018  3
(FF776417) XABT76800.rev Gateway compatible cien cDNA librar...    36   0.018  3
(BW068739) Ciona intestinalis cDNA, clone:rcicl077g19, 3' en...    36   0.020  3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   0.020  9
(FF753008) XABT60936.rev Gateway compatible cien cDNA librar...    36   0.020  3
(FF755152) XABT62375.rev Gateway compatible cien cDNA librar...    36   0.020  3
(FK164997) XABT189341.g1 Gateway compatible cien cDNA librar...    36   0.021  3
(FF800097) XABT92813.rev Gateway compatible cien cDNA librar...    36   0.021  3
(BW412967) Ciona intestinalis cDNA, clone:cima816f03, 3'end,...    36   0.021  3
(FF936933) CBWU72414.g1 Yutaka Satou unpublished cDNA librar...    36   0.021  3
(AV871210) Ciona intestinalis cDNA, clone:rcieg26e19, 3' end...    36   0.022  3
(AV871123) Ciona intestinalis cDNA, clone:rcieg26a12, 3' end...    36   0.022  3
(BW276940) Ciona intestinalis cDNA, clone:cign077c22, 5' end...    36   0.022  3
(BW078959) Ciona intestinalis cDNA, clone:rcieg077i01, 3' en...    36   0.022  3
(BW071325) Ciona intestinalis cDNA, clone:rcicl095m16, 3' en...    36   0.023  3
(FF980045) CBWU103257.g1 Yutaka Satou unpublished cDNA libra...    36   0.023  3
(BW394003) Ciona intestinalis cDNA, clone:ciem813k21, 3'end,...    36   0.023  3
(BW493591) Ciona intestinalis cDNA, clone:cima037b08, 3'end,...    36   0.023  3
(FF717985) XABT36131.rev Gateway compatible cien cDNA librar...    36   0.024  3
(BW135253) Ciona intestinalis cDNA, clone:rcign003j08, 3' en...    36   0.025  3
(AV876840) Ciona intestinalis cDNA, clone:rcitb30m16, 3' end...    36   0.025  3
(BW390417) Ciona intestinalis cDNA, clone:ciem802i14, 3'end,...    36   0.025  3
(BW499552) Ciona intestinalis cDNA, clone:cima049p17, 3'end,...    36   0.025  3
(AE015450) Mycoplasma gallisepticum strain R complete genome.      36   0.025  10
(BW424196) Ciona intestinalis cDNA, clone:cima848c24, 3'end,...    36   0.025  3
(BW080781) Ciona intestinalis cDNA, clone:rcieg083e23, 3' en...    36   0.025  3
(BW138812) Ciona intestinalis cDNA, clone:rcign050k11, 3' en...    36   0.026  3
(BW138213) Ciona intestinalis cDNA, clone:rcign049k11, 3' en...    36   0.026  3
(BW067949) Ciona intestinalis cDNA, clone:rcicl032e17, 3' en...    36   0.026  3
(FF747035) XABT56769.fwd Gateway compatible cien cDNA librar...    36   0.027  3
(BW027640) Ciona intestinalis cDNA, clone:rcibd009e02, 3' en...    36   0.028  3
(BW077493) Ciona intestinalis cDNA, clone:rcieg072n21, 3' en...    36   0.028  3
(BW067523) Ciona intestinalis cDNA, clone:rcicl102o16, 3' en...    36   0.028  3
(BW133579) Ciona intestinalis cDNA, clone:rcign034c23, 3' en...    36   0.029  3
(BW072064) Ciona intestinalis cDNA, clone:rcicl098a22, 3' en...    36   0.029  3
(BW496743) Ciona intestinalis cDNA, clone:cima044d12, 3'end,...    36   0.033  3
(AK114330) Ciona intestinalis cDNA, clone:cicl055p23, full i...    36   0.057  2
(BW480335) Ciona intestinalis cDNA, clone:cima037b08, 5'end,...    36   0.058  2
(FF717986) XABT36131.fwd Gateway compatible cien cDNA librar...    36   0.058  2
(FF755153) XABT62375.fwd Gateway compatible cien cDNA librar...    36   0.058  2
(FF980044) CBWU103257.b1 Yutaka Satou unpublished cDNA libra...    36   0.059  2
(FK133352) XABT169895.b1 Gateway compatible cien cDNA librar...    36   0.059  2
(ES747214) BGBV-aad93f09.b1 Snail_EST_pSMART Biomphalaria gl...    32   0.063  3
(EV821460) BGBV-aae59d10.g1 Snail_EST_pSMART Biomphalaria gl...    32   0.070  3
(GO162866) CAGA40243.fwd CAGA Alvinella pompejana Normalized...    50   0.074  1
(AX392734) Sequence 24 from Patent WO0212526.                      30   0.098  7
(AR707081) Sequence 24 from patent US 6933145.                     30   0.098  7
(EJ361940) 1092963690626 Global-Ocean-Sampling_GS-28-01-01-1...    38   0.10   3
(ER469388) 1092963943222 Global-Ocean-Sampling_GS-35-01-01-1...    38   0.14   3
(AL844507) Plasmodium falciparum 3D7 chromosome 8.                 34   0.14   13
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.16   9
(AC144342) Medicago truncatula clone mth2-10n2, complete seq...    38   0.17   2
(CT010521) M.truncatula DNA sequence from clone MTH2-34D24 o...    38   0.18   2
(CT574549) Zebrafish DNA sequence from clone CH211-80H18 in ...    40   0.25   4
(CU928368) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.29   1
(CU914636) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.29   1
(AC172602) Bos taurus clone CH240-259G22, WORKING DRAFT SEQU...    48   0.29   1
(CV869127) PDUts1063D08 Porcine testis cDNA library I Sus sc...    48   0.29   1
(FG715347) G1144P338FO9.T0 Anolis carolinensis pooled normal...    48   0.29   1
(EW055765) rpigcb_9331.y1 cty Sus scrofa cDNA 5', mRNA seque...    48   0.29   1
(EW052283) rpigcb_16976.y1 cty Sus scrofa cDNA 5', mRNA sequ...    48   0.29   1
(BI815230) PfESToaa16a12.y1 Plasmodium falciparum 3D7 asexua...    32   0.36   3
(AV873260) Ciona intestinalis cDNA, clone:rcicl43a22, 3' end...    32   0.50   3
(EF173130) Entosthodon serratus voucher Bowers 13109 CONN RN...    32   0.55   3
(EF173135) Physcomitrella patens voucher Culture from Schaef...    32   0.56   3
(EF173132) Physcomitrium pyriforme voucher Goffinet 9276 CON...    32   0.56   3
(EF173129) Funariella curviseta voucher Ros and Werner 15/1/...    32   0.56   3
(AC168227) Bos taurus clone CH240-198D21, WORKING DRAFT SEQU...    36   0.94   3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    40   0.97   8
(BV264079) S235P6524FH5.T0 ItalianGreyhound Canis familiaris...    46   1.2    1
(GC536434) Sequence 866 from patent US 7413875.                    46   1.2    1
(BD108782) EST and encoded human protein.                          46   1.2    1
(AX970063) Sequence 866 from Patent EP1104808.                     46   1.2    1
(AR413229) Sequence 866 from patent US 6639063.                    46   1.2    1
(AL160395) Human DNA sequence from clone RP11-474D23 on chro...    46   1.2    1
(EK069481) 1092960171751 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.2    1
(CE244439) tigr-gss-dog-17000373318920 Dog Library Canis lup...    46   1.2    1
(CX685836) yde37h10.y2 Sea urchin EST Lib1 Strongylocentrotu...    46   1.2    1
(FB571377) Sequence 244 from Patent EP1865317.                     40   1.2    4
(FB571321) Sequence 188 from Patent EP1865317.                     40   1.2    4
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    36   1.5    14
(CU928860) Medicago truncatula chromosome 5 clone mth4-58a13...    38   1.6    4
(AC173417) Bos taurus clone CH240-278B13, WORKING DRAFT SEQU...    44   1.7    5
(EV418432) 210771111 NGP Nasonia giraulti cDNA clone 135G1 5...    34   1.8    2
(EF173128) Entosthodon laevis voucher Goffinet 5601 CONN RNA...    32   2.0    3
(EF173131) Physcomitrium pyriforme voucher Goffinet 4737 CON...    32   2.0    3
(AX392736) Sequence 26 from Patent WO0212526.                      32   2.1    5
(AR707083) Sequence 26 from patent US 6933145.                     32   2.1    5
(AC199695) Spermophilus tridecemlineatus clone VMRC20-717K15...    34   2.6    6
(AC214254) Heliconius erato clone BBAM-19O6, WORKING DRAFT S...    34   2.7    4
(AM468811) Vitis vinifera contig VV78X258513.1, whole genome...    36   2.8    2
(EJ296778) 1095388047890 Global-Ocean-Sampling_GS-27-01-01-1...    34   3.0    2
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   3.1    6
(EY330657) CAWY3639.rev CAWY Helobdella robusta Subtracted E...    36   3.3    2
(AC232547) Brassica rapa subsp. pekinensis clone KBrH009K01,...    38   3.3    4
(EJ581902) 1092960177084 Global-Ocean-Sampling_GS-29-01-01-1...    38   3.4    2
(AL135940) Human DNA sequence from clone RP5-896L12 on chrom...    38   3.5    3
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 32   3.5    12
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ...    34   3.5    7
(BX323861) Zebrafish DNA sequence from clone CH211-209F23 in...    34   3.5    5
(AM487854) Vitis vinifera contig VV78X177255.6, whole genome...    40   3.5    3
(CU463885) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   3.6    4
(BX649434) Zebrafish DNA sequence from clone CH211-261N9 in ...    42   3.7    2
(AP001931) Homo sapiens genomic DNA, chromosome 11q clone:RP...    38   3.7    3
(AC175983) Strongylocentrotus purpuratus clone R3-17H17, WOR...    38   3.9    4
(BQ621549) TVEST008.E04 Tv30236_PT cDNA Library Trichomonas ...    40   4.1    2
(AM428100) Vitis vinifera contig VV78X232239.7, whole genome...    32   4.1    4
(AM434804) Vitis vinifera contig VV78X033615.9, whole genome...    40   4.4    2
(CT027674) Zebrafish DNA sequence from clone CH211-57L19 in ...    36   4.4    4
(EY336043) CAWY7434.rev CAWY Helobdella robusta Subtracted E...    36   4.4    2
(AL954655) Zebrafish DNA sequence from clone CH211-226H7.          44   4.5    1
(AC008109) Homo sapiens chromosome 18, clone RP11-476K15, co...    44   4.5    1
(AP001196) Homo sapiens genomic DNA, chromosome 18p11.3 clon...    44   4.5    1
(AC219203) Solanum lycopersicum chromosome 6 clone C06HBa001...    44   4.5    1
(AC202464) Medicago truncatula clone mth2-132k6, WORKING DRA...    44   4.5    1
(AC181303) Strongylocentrotus purpuratus clone R3-4017D20, W...    44   4.5    1
(AC179689) Strongylocentrotus purpuratus clone R3-1021L14, W...    44   4.5    1
(EJ097209) 1095462221359 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.5    1
(EJ069967) 1095458075454 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.5    1
(EJ034847) 1095454066063 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.5    1
(EJ010718) 1095403697417 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.5    1
(AJ543243) Equus caballus GSS, BAC clone CH241-100O16, SP6 e...    44   4.5    1
(CU208144) Equus caballus GSS, BAC clone CH241-325K13, T7 en...    44   4.5    1
(AG472698) Mus musculus molossinus DNA, clone:MSMg01-364I07....    44   4.5    1
(DB635619) Halocynthia roretzi cDNA clone:man31n16, 3' end.        44   4.5    1
(CN772310) tad83g12.x1 Hydra EST Darmstadt I Hydra magnipapi...    44   4.5    1
(BQ513647) EST621062 Generation of a set of potato cDNA clon...    44   4.5    1
(FF637722) G825P589FB11.T0 Acorn worm normalized gastrula pE...    44   4.5    1
(FF475952) G613P6146RA1.T0 Acorn worm blastula/gastrula pCMV...    44   4.5    1
(DQ366714) Uncultured Prochlorococcus marinus clone ASNC2150...    44   4.5    1
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g...    44   4.5    1
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g...    44   4.5    1
(AM942759) Proteus mirabilis strain HI4320, complete genome.       44   4.5    1
(FK066714) XABT127886.g1 Gateway compatible cien cDNA librar...    40   4.7    2
(EY065088) CATF864.rev CATF Artemisia annua, Tanzanian, from...    34   4.9    2
(EU028332) Glycine max clone BAC gmw2-77P21 genomic sequence.      40   4.9    4
(ER369425) 1093022169260 Global-Ocean-Sampling_GS-34-01-01-1...    32   5.1    3
(AX602206) Sequence 135 from Patent WO02092818.                    36   5.2    5
(BH960427) odd99d01.g1 B.oleracea002 Brassica oleracea genom...    34   5.3    2
(FK133954) XABT170247.g1 Gateway compatible cien cDNA librar...    40   5.3    2
(AC120599) Rattus norvegicus clone CH230-283N24, WORKING DRA...    38   5.3    2
(EY326439) CAWY11600.rev CAWY Helobdella robusta Subtracted ...    36   5.6    2
(EI464785) PV_GBa0070A03.r PV_GBa Phaseolus vulgaris genomic...    38   5.6    2
(AC180098) Strongylocentrotus purpuratus clone R3-4007P8, WO...    38   5.8    4
(EY373951) CAXA14823.rev CAXA Helobdella robusta Subtracted ...    36   5.8    2
(EY385315) CAXA5628.rev CAXA Helobdella robusta Subtracted L...    36   5.9    2
(EY369835) CAXA12576.rev CAXA Helobdella robusta Subtracted ...    36   5.9    2
(EJ150765) 1092343760036 Global-Ocean-Sampling_GS-27-01-01-1...    38   6.0    2
(EJ142947) 1092343667034 Global-Ocean-Sampling_GS-27-01-01-1...    38   6.1    2
(EJ989222) 1093023033839 Global-Ocean-Sampling_GS-30-02-01-1...    38   6.2    2
(AX344559) Sequence 10 from Patent WO0200932.                      30   6.3    10
(EJ582070) 1092960178236 Global-Ocean-Sampling_GS-29-01-01-1...    38   6.4    2
(EJ842956) 1093017842350 Global-Ocean-Sampling_GS-30-02-01-1...    38   6.5    2
(AP006115) Lotus japonicus genomic DNA, chromosome 3, clone:...    38   6.5    2
(CJ386191) Molgula tectiformis cDNA, gastrula/neurula clone:...    38   6.6    2
(FM995165) Candida castellii complete mitochondrial genome, ...    34   6.8    5
(CU915554) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.8    3
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    32   6.8    13
(EJ986277) 1093023013101 Global-Ocean-Sampling_GS-30-02-01-1...    38   6.9    2
(FI783696) SIR-5F23TF Sisymbrium irio BAC library SIR Sisymb...    32   7.3    3
(FH146993) CHO_OF3076xa11r1.ab1 CHO_OF3 Nicotiana tabacum ge...    30   7.6    3
(EJ743338) 1092962035842 Global-Ocean-Sampling_GS-30-02-01-1...    38   7.6    2
(EK047555) 1092959646267 Global-Ocean-Sampling_GS-31-01-01-1...    36   7.7    2
(ER420865) 1092963703295 Global-Ocean-Sampling_GS-35-01-01-1...    38   7.7    2
(EJ750697) 1092963032656 Global-Ocean-Sampling_GS-30-02-01-1...    38   7.8    2
(AM453077) Vitis vinifera, whole genome shotgun sequence, co...    36   7.9    5
(AC068754) Homo sapiens 3 BAC RP11-79M2 (Roswell Park Cancer...    38   8.1    2
(AC176571) Strongylocentrotus purpuratus clone R3-3077B11, W...    38   8.2    3
(AC012561) Arabidopsis thaliana chromosome I BAC F11F12 geno...    32   8.6    2
(AC079960) Homo sapiens chromosome 4 clone RP11-422D16 map 4...    36   8.6    5
(AC079279) Arabidopsis thaliana chromosome 1 BAC F17J6 genom...    32   8.7    2
(AC177346) Strongylocentrotus purpuratus clone R3-46P4, WORK...    38   8.7    4
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    32   8.9    7
(BX248583) Blochmannia floridanus complete genome.                 32   9.3    10
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         30   9.6    8
(CU695073) Zebrafish DNA sequence from clone CH73-236E11 in ...    38   9.7    3

>(AU074055) Dictyostelium discoideum slug cDNA, clone SSJ403.
          Length = 240

 Score =  476 bits (240), Expect = e-130
 Identities = 240/240 (100%)
 Strand = Plus / Plus


Query: 1   agaattaaggaaaaatatttatcagtcaatttataatgatgataattgttcaccattgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agaattaaggaaaaatatttatcagtcaatttataatgatgataattgttcaccattgat 60


Query: 61  taaccaaattagatcatcaacaggatcagaatatgaatatttattacaagataaattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaccaaattagatcatcaacaggatcagaatatgaatatttattacaagataaattatt 120


Query: 121 taaattgaatataccatatttaacagagagtcaattaaggaaggatgggtatccaaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaattgaatataccatatttaacagagagtcaattaaggaaggatgggtatccaaaaac 180


Query: 181 accagatattaaattagagattccaatctcttttaaaggatttgtaattaattggattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accagatattaaattagagattccaatctcttttaaaggatttgtaattaattggattga 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 663,477,043
Number of extensions: 42151622
Number of successful extensions: 3893260
Number of sequences better than 10.0: 206
Length of query: 444
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 421
Effective length of database: 102,190,702,835
Effective search space: 43022285893535
Effective search space used: 43022285893535
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U05543-1 (Contig-U05543-1Q) /CSM_Contig/Contig-U05543-1Q.Seq.d
         (444 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070595_1(BC070595|pid:none) Xenopus laevis Uncharacterized pro...   108   4e-23
(Q5E9S8) RecName: Full=Uncharacterized protein C15orf41 homolog;...   108   4e-23
(Q6NRW5) RecName: Full=Uncharacterized protein C15orf41 homolog;      108   4e-23
BC134779_1(BC134779|pid:none) Bos taurus chromosome 15 open read...   108   4e-23
(Q3U4G0) RecName: Full=Uncharacterized protein C15orf41 homolog;...   108   6e-23
(Q28HL3) RecName: Full=Uncharacterized protein C15orf41 homolog;...   108   6e-23
BC052040_1(BC052040|pid:none) Mus musculus cDNA sequence BC05204...   108   6e-23
CP001574_43(CP001574|pid:none) Micromonas sp. RCC299 chromosome ...   108   8e-23
AE014296_2734(AE014296|pid:none) Drosophila melanogaster chromos...    91   1e-17
CP000099_351(CP000099|pid:none) Methanosarcina barkeri str. Fusa...    70   2e-11
AE010299_1132(AE010299|pid:none) Methanosarcina acetivorans str....    68   1e-10
CP000300_1733(CP000300|pid:none) Methanococcoides burtonii DSM 6...    60   3e-08
AK342587_1(AK342587|pid:none) Acyrthosiphon pisum ACYPI006135 mR...    51   1e-05
CP001390_1104(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    34   1.4
CP000698_224(CP000698|pid:none) Geobacter uraniireducens Rf4, co...    33   2.4
CP000393_219(CP000393|pid:none) Trichodesmium erythraeum IMS101,...    33   3.1
(P58994) RecName: Full=Glutamate--cysteine ligase;          EC=6...    32   9.0
CP000233_1505(CP000233|pid:none) Lactobacillus salivarius UCC118...    32   9.0
AJ390510_1(AJ390510|pid:none) Candida albicans partial mRNA for ...    32   9.0

>BC070595_1(BC070595|pid:none) Xenopus laevis Uncharacterized
           protein C15orf41 homolog, mRNA (cDNA clone MGC:81209
           IMAGE:6318603), complete cds.
          Length = 237

 Score =  108 bits (271), Expect = 4e-23
 Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 1/136 (0%)
 Frame = +2

Query: 5   LRKNIYQSIYNDDNCSPLINQIRSSTGSEYEYLLQDKLFKLNIPYLTESQLRKDGYPKTP 184
           L   ++  I ND    PL++ I+ + G E+E LL+ KL + N+ +L E QLR  GY KTP
Sbjct: 70  LANQVHLCIINDCFNGPLVDGIKHAIGHEHEVLLRQKLKEHNLAFLDEDQLRLKGYDKTP 129

Query: 185 DIKLEIPISFKGFVINWIESKASFCDD-NNLLITRDQIIGYRYRYGPGLAIYWFGXXXXX 361
           D+ LE+P++  G VI+WIESKASF D+ ++     DQ   Y  R+GPGL IYW+G
Sbjct: 130 DVILEVPVAVDGHVIHWIESKASFGDEASHKTYLHDQFWSYWNRFGPGLVIYWYGFIEDL 189

Query: 362 XXXXXXGVYITDKFSD 409
                 G+ + D F +
Sbjct: 190 DCNRERGILLKDGFPE 205

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 719,920,738
Number of extensions: 14842141
Number of successful extensions: 29506
Number of sequences better than 10.0: 19
Number of HSP's gapped: 29486
Number of HSP's successfully gapped: 20
Length of query: 148
Length of database: 1,061,185,681
Length adjustment: 110
Effective length of query: 38
Effective length of database: 701,656,401
Effective search space: 26662943238
Effective search space used: 26662943238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

 psg: 0.67  gvh: 0.38  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U05543-1 is nuc