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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05497-1
Contig ID Contig-U05497-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05497-1 (Contig-U05497-1Q) /CSM_Contig/Contig-U05497-1Q.Seq.d
AATAAAACGTATAGAAAATGTCAGATTGGAGTGACCTTCAAAAAGATAAA
TGGATTAATGAAAATAGAGAAGTTGAAGAAGTTGATGCATGGGATGCATC
ATCAGAAGATGAAGTAGAAAAAGTTGAAGAAGAAATTAAAGAACCACCAA
AACCAGTTGTTAAACAATTAACAAAGAAACAAGCATTGCAAAGAGCAATT
GAATTAAAAGAAAAAGAATTAAAAGAACCACAAGGTGACTTTGATATTTA
TTTAGAAGAGAAAAGAAAGAAAGAATTACAAGAAGCATCTGATTTAGAAA
ACAGTAAAAATTTATTCTCTGGTTTATCCGTTAAAGAATCATCATCAGGT
GAACCAATTTCAACTTTTATTCCAAAAACTGAAAAAGATTTTGAACAATA
TTCTCAAATCGTTTCTGATTATTTATTAAAATATGATTCATCAATTCATT
ATGCTACTTTCTTTAAATCATTAATGAAAAAAGTTTTAGTTAATGTATCA
TCATCGGATATGAATGATATTTCAAAAACTTTAACAGTTTTAATTAATGT
AATGAAAAATTAAAGAATGAAAAATCTGGTAAAGGTGGTAATAAAACAAA
AACAAAGGTTGCACCAAAAAAGATTCACATGGGAAATGAATTACAAAACT
ATGATGATTTTGATGATGATTATTTTATTTAAATATTAAATTAATTAATA
AATAAATAAATAATAAAAAATAATAAAAAAATAAATAATTATTCATTATT
TTATTTATACATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 798
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 148455
End point 147692
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U05497
List of clone(s) 

est1=SSK468E,1,763
est2=SSI878Z,216,799
Translated Amino Acid sequence 
*nv*KMSDWSDLQKDKWINENREVEEVDAWDASSEDEVEKVEEEIKEPPKPVVKQLTKKQ
ALQRAIELKEKELKEPQGDFDIYLEEKRKKELQEASDLENSKNLFSGLSVKESSSGEPIS
TFIPKTEKDFEQYSQIVSDYLLKYDSSIHYATFFKSLMKKVLVNVSSSDMNDISKTLTVL
INVMKN*rmknlvkvvikqkqrlhqkrftwemnyktmmilmmiilfky*in**ink**ki
ikk*iiihyfiytlkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nktyrkcqigvtfkkinglmkieklkklmhgmhhqkmk*kklkkklknhqnqllnn*qrn
khckeqln*kkkn*knhkvtlifi*krkerknykkhli*ktvkiyslvyplknhhqvnqf
qllfqklkkilnnilksfliiy*nmihqfimllslnh**kkf*lmyhhri*mifqkl*qf
*lm**kike*kiw*rw**nknkgctkkdshgk*itkl**f***lfylniklink*innkk
**knk*lfiilfih*kkkkkkkkkkk


Frame B:
ikrienvrle*pskr*md**k*rs*rs*cmgciirr*srks*rrn*rttktsc*tinket
siaksn*ikrkrikrttr*l*ylfrrekkeritrsi*frkq*kfilwfir*riiir*tnf
nfyskn*krf*tifsnrf*lfiki*finslcyfl*iineksfs*ciiigye*yfknfnsf
n*cneklkneksgkggnktktkvapkkihmgnelqnyddfdddyfi*iln*link*iikn
nkkinnyslfylyikkkkkkkkkkk


Frame C:
*nv*KMSDWSDLQKDKWINENREVEEVDAWDASSEDEVEKVEEEIKEPPKPVVKQLTKKQ
ALQRAIELKEKELKEPQGDFDIYLEEKRKKELQEASDLENSKNLFSGLSVKESSSGEPIS
TFIPKTEKDFEQYSQIVSDYLLKYDSSIHYATFFKSLMKKVLVNVSSSDMNDISKTLTVL
INVMKN*rmknlvkvvikqkqrlhqkrftwemnyktmmilmmiilfky*in**ink**ki
ikk*iiihyfiytlkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05497-1 (Contig-U05497-1Q)
/CSM_Contig/Contig-U05497-1Q.Seq.d
         (798 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05497-1 (Contig-U05497-1Q) /CSM_Contig/Conti...  1078  0.0
Contig-U12498-1 (Contig-U12498-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U10817-1 (Contig-U10817-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U05597-1 (Contig-U05597-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U10818-1 (Contig-U10818-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10756-1 (Contig-U10756-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U09738-1 (Contig-U09738-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U09392-1 (Contig-U09392-1Q) /CSM_Contig/Conti...    40  0.004

>Contig-U05497-1 (Contig-U05497-1Q) /CSM_Contig/Contig-U05497-1Q.Seq.d
          Length = 798

 Score = 1078 bits (544), Expect = 0.0
 Identities = 544/544 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaaacgtatagaaaatgtcagattggagtgaccttcaaaaagataaatggattaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aataaaacgtatagaaaatgtcagattggagtgaccttcaaaaagataaatggattaatg 60

                                                                       
Query: 61  aaaatagagaagttgaagaagttgatgcatgggatgcatcatcagaagatgaagtagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaatagagaagttgaagaagttgatgcatgggatgcatcatcagaagatgaagtagaaa 120

                                                                       
Query: 121 aagttgaagaagaaattaaagaaccaccaaaaccagttgttaaacaattaacaaagaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagttgaagaagaaattaaagaaccaccaaaaccagttgttaaacaattaacaaagaaac 180

                                                                       
Query: 181 aagcattgcaaagagcaattgaattaaaagaaaaagaattaaaagaaccacaaggtgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagcattgcaaagagcaattgaattaaaagaaaaagaattaaaagaaccacaaggtgact 240

                                                                       
Query: 241 ttgatatttatttagaagagaaaagaaagaaagaattacaagaagcatctgatttagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgatatttatttagaagagaaaagaaagaaagaattacaagaagcatctgatttagaaa 300

                                                                       
Query: 301 acagtaaaaatttattctctggtttatccgttaaagaatcatcatcaggtgaaccaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acagtaaaaatttattctctggtttatccgttaaagaatcatcatcaggtgaaccaattt 360

                                                                       
Query: 361 caacttttattccaaaaactgaaaaagattttgaacaatattctcaaatcgtttctgatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caacttttattccaaaaactgaaaaagattttgaacaatattctcaaatcgtttctgatt 420

                                                                       
Query: 421 atttattaaaatatgattcatcaattcattatgctactttctttaaatcattaatgaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atttattaaaatatgattcatcaattcattatgctactttctttaaatcattaatgaaaa 480

                                                                       
Query: 481 aagttttagttaatgtatcatcatcggatatgaatgatatttcaaaaactttaacagttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagttttagttaatgtatcatcatcggatatgaatgatatttcaaaaactttaacagttt 540

               
Query: 541 taat 544
           ||||
Sbjct: 541 taat 544


 Score =  143 bits (72), Expect = 3e-34
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                       
Query: 607 ggttgcaccaaaaaagattcacatgggaaatgaattacaaaactatgatgattttgatga 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggttgcaccaaaaaagattcacatgggaaatgaattacaaaactatgatgattttgatga 666

                       
Query: 667 tgattattttat 678
           ||||||||||||
Sbjct: 667 tgattattttat 678


 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 740 tattcattattttatttatacatt 763
           ||||||||||||||||||||||||
Sbjct: 740 tattcattattttatttatacatt 763


>Contig-U12498-1 (Contig-U12498-1Q) /CSM_Contig/Contig-U12498-1Q.Seq.d
          Length = 1531

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 104  agaagatgaagtagaaaaagttgaagaagaa 134
            |||||| ||||| ||||||||||||||||||
Sbjct: 1230 agaagaagaagttgaaaaagttgaagaagaa 1260


 Score = 36.2 bits (18), Expect = 0.056
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 68   agaagttgaagaagttga 85
            ||||||||||||||||||
Sbjct: 1188 agaagttgaagaagttga 1205


 Score = 30.2 bits (15), Expect = 3.5
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                   
Query: 111  gaagtagaaaaagttgaagaaga 133
            ||||| ||| |||||||||||||
Sbjct: 1189 gaagttgaagaagttgaagaaga 1211


 Score = 30.2 bits (15), Expect = 3.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 116  agaaaaagttgaagaagaa 134
            |||| ||||||||||||||
Sbjct: 1215 agaagaagttgaagaagaa 1233


>Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Contig-U12095-1Q.Seq.d
          Length = 2532

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 201 gaattaaaagaaaaagaattaaaagaa 227
           |||||||||||||| ||||||||||||
Sbjct: 848 gaattaaaagaaaaggaattaaaagaa 874


 Score = 38.2 bits (19), Expect = 0.014
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 208  aagaaaaagaattaaaaga 226
            |||||||||||||||||||
Sbjct: 2373 aagaaaaagaattaaaaga 2391


 Score = 36.2 bits (18), Expect = 0.056
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 206 aaaagaaaaagaattaaaagaa 227
           ||||||||| ||||||||||||
Sbjct: 838 aaaagaaaaggaattaaaagaa 859


 Score = 36.2 bits (18), Expect = 0.056
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 201 gaattaaaagaaaaagaattaaaag 225
           |||||||||||||| | ||||||||
Sbjct: 863 gaattaaaagaaaaggnattaaaag 887


 Score = 30.2 bits (15), Expect = 3.5
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 198 attgaattaaaagaaaaagaatt 220
           ||||||||||||  |||||||||
Sbjct: 620 attgaattaaaattaaaagaatt 642


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,915
Number of Sequences: 6905
Number of extensions: 19915
Number of successful extensions: 2835
Number of sequences better than 10.0: 366
length of query: 798
length of database: 5,674,871
effective HSP length: 16
effective length of query: 782
effective length of database: 5,564,391
effective search space: 4351353762
effective search space used: 4351353762
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.28
Homology vs DNA 
Query= Contig-U05497-1 (Contig-U05497-1Q) /CSM_Contig/Contig-U05497-1Q.Seq.d
         (798 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90654) Dictyostelium discoideum slug cDNA, clone SSI878.        624   e-174  1
(C91578) Dictyostelium discoideum slug cDNA, clone SSK468.        593   e-165  1
(AU074355) Dictyostelium discoideum slug cDNA, clone SSK468.      317   1e-83  2
(BJ442116) Dictyostelium discoideum cDNA clone:ddv48k22, 3' ...    46   1e-05  2
(AU261905) Dictyostelium discoideum vegetative cDNA clone:VS...    46   1e-05  2
(BQ627349) rc78f02.y1 Meloidogyne hapla egg SL1 TOPO v1 Melo...    56   0.002  1
(AF202180) Plasmodium falciparum erythrocyte membrane-associ...    36   0.007  6
(AZ543830) ENTFT53TR Entamoeba histolytica Sheared DNA Entam...    48   0.008  2
(CU914501) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.009  3
(CU606855) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.012  4
(CU928710) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.020  4
(AC197661) Spermophilus tridecemlineatus clone VMRC20-497K4,...    42   0.024  6
(BX936398) Yersinia pseudotuberculosis IP32953 genome, compl...    36   0.069  2
(CP000720) Yersinia pseudotuberculosis IP 31758, complete ge...    36   0.069  2
(CP000308) Yersinia pestis Antiqua, complete genome.               36   0.069  2
(CP001048) Yersinia pseudotuberculosis PB1/+, complete genome.     36   0.069  2
(AL590842) Yersinia pestis CO92 complete genome.                   36   0.069  2
(AE009952) Yersinia pestis KIM, complete genome.                   36   0.069  2
(AE017042) Yersinia pestis biovar Microtus str. 91001, compl...    36   0.069  2
(CP000305) Yersinia pestis Nepal516, complete genome.              36   0.069  2
(CP000668) Yersinia pestis Pestoides F, complete genome.           36   0.069  2
(CP000901) Yersinia pestis Angola, complete genome.                36   0.069  2
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    36   0.082  11
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    40   0.084  8
(AF296829) Arabidopsis thaliana BAC F3D18.                         38   0.090  4
(BJ330933) Dictyostelium discoideum cDNA clone:dda33d10, 5' ...    36   0.092  3
(DQ772556) Synthetic construct Yersinia pestis clone FLH0140...    36   0.10   2
(CF445196) EST681541 normalized cDNA library of onion Allium...    40   0.10   2
(FI010786) CHO_OF6906xn23f1.ab1 CHO_OF6 Nicotiana tabacum ge...    50   0.14   1
(AC006846) Caenorhabditis elegans clone Y119C1Z, *** SEQUENC...    44   0.14   6
(AZ674248) ENTMS03TF Entamoeba histolytica Sheared DNA Entam...    34   0.18   3
(AC015838) Homo sapiens clone RP11-23I21, LOW-PASS SEQUENCE ...    44   0.19   3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   0.22   9
(AE015927) Clostridium tetani E88, complete genome.                34   0.26   2
(ES618505) NGPCG86TR NGPA Nasonia giraulti cDNA, mRNA sequence.    46   0.29   2
(AC127814) Rattus norvegicus clone CH230-444J14, WORKING DRA...    44   0.31   2
(ES614393) NGPA995TR NGPA Nasonia giraulti cDNA, mRNA sequence.    46   0.32   2
(EV415987) 210751642 NGP Nasonia giraulti cDNA clone 136C9 3...    46   0.33   2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   0.34   11
(EV415268) 210745388 NGP Nasonia giraulti cDNA clone 136C9 5...    46   0.35   2
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.37   16
(EK076983) 1092961053729 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.38   2
(AM655863) Entamoeba moshkovskii FIC GSS, clone mosh032d02.p1k.    36   0.39   2
(EE635251) CHEL6050.b1_D02.ab1 CHE(LMS) serpentine sunflower...    34   0.39   2
(AM657448) Entamoeba moshkovskii FIC GSS, clone mosh061b02.q1k.    36   0.40   2
(FT070479) Rattus norvegicus DNA, BAC clone: RNB2-099M11, 5'...    38   0.40   2
(AM656988) Entamoeba moshkovskii FIC GSS, clone mosh051e03.q1k.    36   0.40   2
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    40   0.40   18
(AJ663647) Sus scrofa EST, clone C0000027_A11.                     34   0.40   2
(AJ663899) Sus scrofa EST, clone C0000027_P10.                     34   0.40   2
(FE278922) CANB390.rev CANB_Daphnia_pulex_Log50_Library_13 D...    38   0.41   2
(BJ379352) Dictyostelium discoideum cDNA clone:ddc34g18, 3' ...    38   0.41   2
(FI039010) CHO_OF6461xf20r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   0.41   2
(EJ098659) 1095462334226 Global-Ocean-Sampling_GS-26-01-01-1...    38   0.45   2
(BC046865) Xenopus laevis similar to midnolin, mRNA (cDNA cl...    48   0.54   1
(BS000041) Pan troglodytes chromosome 22 clone:PTB-022L23, m...    48   0.54   1
(DD374055) METHODS FOR DIAGNOSING RCC AND OTHER SOLID TUMORS.      48   0.54   1
(GC887854) Sequence 203099 from patent US 6812339.                 48   0.54   1
(GC887853) Sequence 203098 from patent US 6812339.                 48   0.54   1
(GC702223) Sequence 17468 from patent US 6812339.                  48   0.54   1
(AM269894) Eimeria tenella chromosome 1, ordered contigs.          48   0.54   1
(AK116613) Ciona intestinalis cDNA, clone:cits040g01, full i...    48   0.54   1
(AY442342) Homo sapiens peroxisome proliferative activated r...    48   0.54   1
(AL163217) Homo sapiens chromosome 21 segment HS21C017.            48   0.54   1
(AL022721) Human DNA sequence from clone RP1-109F14 on chrom...    48   0.54   1
(AF130417) Homo sapiens chromosome 21 clone PAC P704-97I18 m...    48   0.54   1
(AC123481) Rattus norvegicus clone CH230-61F22, *** SEQUENCI...    48   0.54   1
(AC106635) Rattus norvegicus clone CH230-223E5, *** SEQUENCI...    48   0.54   1
(AC187214) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    48   0.54   1
(BH163208) ENTRS20TR Entamoeba histolytica Sheared DNA Entam...    48   0.54   1
(BH160520) ENTTS63TR Entamoeba histolytica Sheared DNA Entam...    48   0.54   1
(AZ673558) ENTKG87TF Entamoeba histolytica Sheared DNA Entam...    48   0.54   1
(AZ539332) ENTGP83TF Entamoeba histolytica Sheared DNA Entam...    48   0.54   1
(EB481695) AGENCOURT_73654762 NICHD_XGC_olfb Xenopus laevis ...    48   0.54   1
(DC084441) Xenopus laevis NBRP cDNA clone:rxl286b03, 3' end.       48   0.54   1
(DC073430) Xenopus laevis NBRP cDNA clone:rxl247c22, 3' end.       48   0.54   1
(DC065067) Xenopus laevis NBRP cDNA clone:xlk163a23ex, 5' end.     48   0.54   1
(DC031534) Xenopus laevis NBRP cDNA clone:rxlk163a23ex, 3' end.    48   0.54   1
(DC011565) Xenopus laevis NBRP cDNA clone:rxlk128f18ex, 3' end.    48   0.54   1
(CB561988) AGENCOURT_13324723 NICHD_XGC_Tad1 Xenopus laevis ...    48   0.54   1
(CA987353) AGENCOURT_11284470 NICHD_XGC_Emb1 Xenopus laevis ...    48   0.54   1
(BW371124) Ciona intestinalis cDNA, clone:cima852c21, 5'end,...    48   0.54   1
(BW356454) Ciona intestinalis cDNA, clone:cima809p13, 5'end,...    48   0.54   1
(BW333943) Ciona intestinalis cDNA, clone:cidg846k16, 5'end,...    48   0.54   1
(BW205815) Ciona intestinalis cDNA, clone:cicl092d06, 5' end...    48   0.54   1
(BP025901) Ciona intestinalis cDNA, clone:cits40g01, 5' end,...    48   0.54   1
(BJ100150) Xenopus laevis cDNA clone:XL173i23, 3' end, singl...    48   0.54   1
(FK220203) XABT223602.b1 Gateway compatible cien cDNA librar...    48   0.54   1
(FK137447) XABT172310.b1 Gateway compatible cien cDNA librar...    48   0.54   1
(FK099385) XABT148049.b1 Gateway compatible cien cDNA librar...    48   0.54   1
(FK060611) XABT124219.b1 Gateway compatible cien cDNA librar...    48   0.54   1
(FF926789) CBWU65353.b1 Yutaka Satou unpublished cDNA librar...    48   0.54   1
(FF904020) CBWU36108.b1 Yutaka Satou unpublished cDNA librar...    48   0.54   1
(FF850545) CBWU2316.b1 Yutaka Satou unpublished cDNA library...    48   0.54   1
(FF730903) XABT45489.fwd Gateway compatible cien cDNA librar...    48   0.54   1
(FF695308) XABT106447.fwd Gateway compatible cien cDNA libra...    48   0.54   1
(AV955741) Ciona intestinalis cDNA, clone:cilv10e15, 5' end,...    48   0.54   1
(AC157842) Meleagris gallopavo clone CH260-59P6, WORKING DRA...    36   0.59   7
(FI733268) BOT01-70A20TR BOT01 Brassica oleracea genomic clo...    32   0.60   3
(AC176543) Strongylocentrotus purpuratus clone R3-3075O19, W...    38   0.61   3
(AC181709) Strongylocentrotus purpuratus clone R3-1039L24, W...    44   0.65   2
(BM159942) EST562465 PyBS Plasmodium yoelii yoelii cDNA clon...    38   0.78   2
(CN623327) tae05f11.y1 Hydra EST Darmstadt I Hydra magnipapi...    40   0.95   2
(BP522804) Hydra magnipapillata cDNA, clone:hmp_20746.             40   0.95   2
(CN634020) taf55d01.y1 Hydra EST Darmstadt I Hydra magnipapi...    40   0.95   2
(CN626245) tae56e01.y1 Hydra EST Darmstadt I Hydra magnipapi...    40   0.95   2
(CN632994) taf04d03.y1 Hydra EST Darmstadt I Hydra magnipapi...    40   1.0    2
(CN627340) tae91b08.y1 Hydra EST Darmstadt I Hydra magnipapi...    40   1.1    2
(AC164981) Mus musculus BAC clone RP23-121F5 from chromosome...    34   1.1    2
(AC113476) Mus musculus chromosome 17, clone RP23-304J1, com...    34   1.1    2
(CU633374) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.1    2
(AC151090) Bos taurus clone CH240-117L14, WORKING DRAFT SEQU...    36   1.1    2
(AC221596) Bos taurus clone CH240-391D11, WORKING DRAFT SEQU...    32   1.1    7
(AB028615) Arabidopsis thaliana genomic DNA, chromosome 3, P...    46   1.2    2
(FN014516) Petunia axillaris subsp. axillaris EST, clone dr0...    40   1.2    2
(BP517771) Hydra magnipapillata cDNA, clone:hmp_14545.             40   1.2    2
(CV863460) ACAB-aaa13d04.g1 Hydra UCI6- barcoded EST's Hydra...    40   1.2    2
(BP510510) Hydra magnipapillata cDNA, clone:hmp_05564.             40   1.2    2
(AM472767) Vitis vinifera contig VV78X073226.7, whole genome...    42   1.2    2
(AC142498) Medicago truncatula clone mth2-24a18, complete se...    34   1.2    5
(CX833359) ACAC-aaa34g03.g1 Hydra EST UCI 7 Hydra magnipapil...    40   1.3    2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   1.3    14
(BV617474) S216P60287RF11.T0 Masuku Pan troglodytes troglody...    36   1.3    2
(AC195043) Colobus guereza clone CH272-93E17, WORKING DRAFT ...    42   1.3    3
(AC202365) Medicago truncatula clone mth2-65l6, WORKING DRAF...    36   1.3    6
(GP196400) Sequence 65863 from patent US 7482117.                  42   1.4    2
(GP179012) Sequence 48475 from patent US 7482117.                  42   1.4    2
(ER419087) 1092963691371 Global-Ocean-Sampling_GS-35-01-01-1...    36   1.5    2
(EK315928) 1095462412865 Global-Ocean-Sampling_GS-31-01-01-1...    34   1.5    2
(EK527729) 1095515648842 Global-Ocean-Sampling_GS-32-01-01-1...    36   1.5    2
(DX374998) 3B_054_M05_RM2 Triticum aestivum chromosome 3B-sp...    38   1.5    2
(EJ099258) 1095462380281 Global-Ocean-Sampling_GS-26-01-01-1...    36   1.5    2
(DE889876) Macropus eugenii DNA, BAC clone: MEB1-065P24_R, 3...    36   1.5    2
(FI167366) CMHD-GT_538C8-5S GTL_R1_UPA Mus musculus genomic ...    34   1.5    2
(AZ347465) 1M0083M04R Mouse 10kb plasmid UUGC1M library Mus ...    34   1.5    2
(CR914879) Sus scrofa BES.                                         36   1.5    2
(EJ430718) 1093015253961 Global-Ocean-Sampling_GS-28-01-01-1...    32   1.5    2
(EC821712) SME00006746 esmbsro2 Sawyeria marylandensis cDNA,...    32   1.5    2
(DR197447) 11056036 CERES-AN65 Arabidopsis thaliana cDNA clo...    36   1.5    2
(AM651384) Entamoeba moshkovskii FIC GSS, clone mosh095b08.p1k.    36   1.5    2
(CU481337) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.5    4
(EF776671) Mus musculus C57BL/6N IST10795H2HMF1 gene trap em...    34   1.5    2
(EF778200) Mus musculus C57BL/6N IST10996F3BBF1 gene trap em...    34   1.5    2
(EF881705) Mus musculus C57BL/6N IST12228F7BBF1 gene trap em...    34   1.5    2
(EF937357) Mus musculus C57BL/6N IST12667F6BBF1 gene trap em...    34   1.5    2
(EK580948) 1095521695641 Global-Ocean-Sampling_GS-32-01-01-1...    44   1.5    2
(DH273184) Oryzias latipes Fosmid clone:GOLWFno606_b07, reve...    36   1.5    2
(EF774755) Mus musculus C57BL/6N IST10996F3HMF1 gene trap em...    34   1.6    2
(EF881706) Mus musculus C57BL/6N IST12228F7HMF1 gene trap em...    34   1.6    2
(FC680495) CAXX14189.fwd CAXX Lottia gigantea from male gona...    34   1.7    3
(AC015727) Homo sapiens chromosome 17, clone RP11-420A6, com...    40   1.8    3
(EJ789221) 1093017368559 Global-Ocean-Sampling_GS-30-02-01-1...    32   1.8    3
(CU372920) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    40   2.0    5
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         38   2.0    8
(EH370373) D07_j001_plate_21 j001 Nicotiana benthamiana cDNA...    32   2.0    3
(AC200679) Pongo abelii BAC clone CH276-249G5 from chromosom...    34   2.1    6
(BC148828) Synthetic construct Mus musculus clone IMAGE:1000...    46   2.1    1
(BC146344) Synthetic construct Mus musculus clone IMAGE:1000...    46   2.1    1
(AY317601) Mus musculus olfactory receptor Olfr493 (Olfr493)...    46   2.1    1
(AY073783) Mus musculus olfactory receptor MOR204-35 gene, c...    46   2.1    1
(AC141869) Mus musculus BAC clone RP24-424D1 from 8, complet...    46   2.1    1
(AC131784) Mus musculus BAC clone RP24-391G14 from chromosom...    46   2.1    1
(U41107) Caenorhabditis elegans cosmid F55C12, complete sequ...    46   2.1    1
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete...    46   2.1    1
(AC099791) Homo sapiens chromosome 1 clone RP11-430G17, comp...    46   2.1    1
(AC097064) Homo sapiens chromosome 1 clone RP11-524L19, comp...    46   2.1    1
(AC008691) Homo sapiens chromosome 5 clone CTB-63A22, comple...    46   2.1    1
(AC142726) Macaca mulatta clone CH250-272P10, *** SEQUENCING...    46   2.1    1
(AC120119) Homo sapiens chromosome 5 clone RP11-133P2, WORKI...    46   2.1    1
(AC114960) Homo sapiens chromosome 5 clone RP11-188C17, WORK...    46   2.1    1
(AC114926) Homo sapiens chromosome 5 clone CTB-48E22, WORKIN...    46   2.1    1
(CU076071) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.1    1
(AC219655) Bos taurus clone CH240-326O7, WORKING DRAFT SEQUE...    46   2.1    1
(AC181673) Strongylocentrotus purpuratus clone R3-1040P22, W...    46   2.1    1
(AC177527) Bos taurus clone CH240-78I7, WORKING DRAFT SEQUEN...    46   2.1    1
(AC176647) Strongylocentrotus purpuratus clone R3-112N24, WO...    46   2.1    1
(AC025691) Homo sapiens chromosome 1 clone RP11-12H8, WORKIN...    46   2.1    1
(AZ692615) ENTKL80TF Entamoeba histolytica Sheared DNA Entam...    46   2.1    1
(ER466012) 1092963922591 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.1    1
(ER459362) 1092963882004 Global-Ocean-Sampling_GS-35-01-01-1...    46   2.1    1
(EK427259) 1095516040410 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.1    1
(EJ917385) 1093018571106 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.1    1
(EJ902678) 1093018496942 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.1    1
(EJ435155) 1093015277054 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.1    1
(EJ428201) 1093015239200 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.1    1
(EJ427680) 1093015235684 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.1    1
(EJ333954) 1092963462525 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.1    1
(EJ191562) 1092344202555 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.1    1
(EJ146097) 1092343717553 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.1    1
(EJ129529) 1092343419249 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.1    1
(EJ070476) 1095458080592 Global-Ocean-Sampling_GS-26-01-01-1...    46   2.1    1
(EJ035635) 1095454068189 Global-Ocean-Sampling_GS-26-01-01-1...    46   2.1    1
(DX411983) SOYFL87TH LargeInsertSoybeanGenLibBuild4 Glycine ...    46   2.1    1
(CZ776416) OC__Ba0136A19.r OC__Ba Oryza coarctata genomic cl...    46   2.1    1
(CL114400) ISB1-60C22_Sp6.1 ISB1 Xenopus (Silurana) tropical...    46   2.1    1
(ES393053) MUS12-H19.x1d-t SHGC-MUS Mytilus californianus cD...    46   2.1    1
(DT841955) LB00462.CR_B05 GC_BGC-04 Bos taurus cDNA clone IM...    46   2.1    1
(DR171083) 25_M15:A Triphysaria versicolor root-tip, early D...    46   2.1    1
(DB751577) Apis mellifera head cDNA, RIKEN full-length enric...    46   2.1    1
(DB739266) Apis mellifera head cDNA, RIKEN full-length enric...    46   2.1    1
(AM879763) Mytilus edulis EST, 5' end sequence, clone mytilu...    46   2.1    1
(CB180266) AGENCOURT_11382456 NICHD_XGC_Tad1 Xenopus laevis ...    46   2.1    1
(BM356741) 15I-F12 Triphysaria versicolor root-tip, early DM...    46   2.1    1
(FP238508) Aquafirst Sea Bass SSH selection pathogen gill (s...    46   2.1    1
(FD768766) Zfi02b_55_D12_C017.b1 cDNA library derived from f...    46   2.1    1
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    46   2.1    1
(AC194800) Pan troglodytes BAC clone CH251-549M16 from chrom...    34   2.1    7
(BH164079) ENTRO81TR Entamoeba histolytica Sheared DNA Entam...    38   2.5    3
(BG497147) 602537644F1 NIH_MGC_59 Homo sapiens cDNA clone IM...    36   2.5    2
(AC179641) Strongylocentrotus purpuratus clone R3-1024O21, W...    40   2.6    5
(AE017263) Mesoplasma florum L1 complete genome.                   34   2.6    14
(AC207824) Macaca mulatta clone CH250-200E20, WORKING DRAFT ...    40   2.7    3
(U40059) Caenorhabditis elegans cosmid K03C7, complete seque...    38   2.8    2
(CT573029) M.truncatula DNA sequence from clone MTH2-67H11 o...    34   3.0    5
(AC106904) Rattus norvegicus clone CH230-148L20, *** SEQUENC...    44   3.2    4
(BM169868) EST572391 PyBS Plasmodium yoelii yoelii cDNA clon...    38   3.2    2
(BM162360) EST564883 PyBS Plasmodium yoelii yoelii cDNA clon...    38   3.2    2
(AP003558) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    38   3.3    6
(CU915347) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.5    3
(AW616834) EST323245 L. hirsutum trichome, Cornell Universit...    36   3.6    2
(CU861619) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.7    3
(AC135377) Mus musculus BAC clone RP24-66B2 from chromosome ...    36   3.7    3
(BM160530) EST563053 PyBS Plasmodium yoelii yoelii cDNA clon...    38   3.7    2
(CU571020) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.8    3
(AC139824) Homo sapiens chromosome 5 clone RP11-291C13, WORK...    36   3.8    6
(AC207136) Macaca mulatta clone CH250-95I18, WORKING DRAFT S...    40   4.0    2
(AC105712) Rattus norvegicus clone CH230-138E4, *** SEQUENCI...    34   4.0    2
(AC107535) Rattus norvegicus clone CH230-211A22, *** SEQUENC...    34   4.0    2
(CU928943) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.0    7
(AC091941) Homo sapiens chromosome 5 clone RP11-334G8, compl...    32   4.0    2
(AC019079) Homo sapiens chromosome 5 clone RP11-334G8, WORKI...    32   4.0    2
(CU466304) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.0    2
(GC810396) Sequence 125641 from patent US 6812339.                 42   4.0    2
(FP312795) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.0    2
(AC091846) Homo sapiens chromosome 5 clone CTD-2210H19, WORK...    32   4.1    2
(AC096850) Pan troglodytes clone RP43-115P7, WORKING DRAFT S...    38   4.1    6
(AC116361) Homo sapiens chromosome 5 clone RP11-731L3, compl...    32   4.2    2
(CU915608) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   4.2    3
(AJ811271) Thermotoga petrophila GSS, clone RKU-1_AluI_1d03,...    40   4.3    2
(AJ811268) Thermotoga petrophila GSS, clone RKU-1_AluI_1c12,...    40   4.3    2
(AC113638) Rattus norvegicus clone CH230-25D11, *** SEQUENCI...    40   4.5    4
(CU468973) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   4.5    4
(BM169665) EST572188 PyBS Plasmodium yoelii yoelii cDNA clon...    38   4.6    2
(AC193795) Pan troglodytes BAC clone CH251-688E16 from chrom...    40   4.7    3
(CP000312) Clostridium perfringens SM101, complete genome.         40   4.7    17
(DQ097235) Toxoplasma gondii ATP-binding cassette sub-family...    34   4.8    2
(AC151281) Mus musculus BAC clone RP24-144E8 from chromosome...    42   4.9    4
(AC046160) Mus musculus strain C57BL6/J chromosome 6 clone R...    38   4.9    3
(FP245458) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   5.0    6
(FH153199) CHO_OF3066xo13r1.ab1 CHO_OF3 Nicotiana tabacum ge...    38   5.1    2
(CR361556) Zebrafish DNA sequence from clone DKEY-97G1 in li...    40   5.1    4
(EB680897) KL4B.111L07F.060128T7 KL4B Nicotiana tabacum cDNA...    32   5.1    3
(BX248786) Pinus pinaster xylem EST, clone PP001A07.               32   5.3    3
(FH072974) CHO_OF3678xp21r1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   5.4    2
(EJ098797) 1095462343816 Global-Ocean-Sampling_GS-26-01-01-1...    34   5.4    2
(FL641644) TS09-C6 Reticulitermes flavipes symbiont library ...    34   5.4    2
(FH628298) CHO_OF4957xf21f1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   5.4    2
(FH640930) CHO_OF4572xa20f1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   5.4    2
(ED256817) AUAC-aag05e02.g1 Ascaris suum whole genome shotgu...    32   5.4    2
(FH725147) CHO_OF5003xh24r1.ab1 CHO_OF5 Nicotiana tabacum ge...    32   5.4    2
(DH679119) Rattus norvegicus DNA, BAC clone: RNB1-231M04, 5'...    34   5.4    2
(FI055685) CHO_OF6603xi03f1.ab1 CHO_OF6 Nicotiana tabacum ge...    32   5.4    2
(EJ225630) 1092358200189 Global-Ocean-Sampling_GS-27-01-01-1...    34   5.5    2
(AC122812) Mus musculus BAC clone RP23-285M9 from 1, complet...    32   5.5    6
(CD742794) UI-H-FT2-bjq-d-12-0-UI.s1 NCI_CGAP_FT2 Homo sapie...    34   5.5    2
(BP529488) Nicotiana tabacum cDNA, clone: BY14386, primer: M...    32   5.5    2
(EI789953) CHORI518015P06TR BAC library from the breast cell...    32   5.5    2
(EV987469) rcmu36_o10.y1 cmu Sus scrofa cDNA 5', mRNA sequence.    34   5.6    2
(EC824999) SME00001283 esmbsro2 Sawyeria marylandensis cDNA,...    34   5.6    2
(AC193517) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    44   5.6    4
(AL627234) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    36   5.6    7
(AC131417) Rattus norvegicus clone CH230-293F6, WORKING DRAF...    42   5.8    3
(EY855619) CG32-C1-003-051-G03-CT.F Mexican lime leaf, green...    42   5.8    2
(AM625267) Entamoeba dispar GSS, clone dispar116c07.q1k.           40   5.9    2
(ER380209) 1094338648850 Global-Ocean-Sampling_GS-34-01-01-1...    40   5.9    2
(EJ037294) 1095454077366 Global-Ocean-Sampling_GS-26-01-01-1...    38   6.0    2
(AC219351) Bos taurus clone CH240-338C20, WORKING DRAFT SEQU...    36   6.2    5
(AC096699) Rattus norvegicus clone CH230-167J5, WORKING DRAF...    44   6.2    3
(CU570725) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.4    5
(AM422018) Candidatus Phytoplasma australiense complete genome.    34   6.5    14
(AL402389) T3 end of clone AT0AA001F06 of library AT0AA from...    40   6.7    2
(AM447504) Vitis vinifera contig VV78X109413.3, whole genome...    40   6.7    3
(AC216715) Bos taurus Y Chr BAC CH240-305C6 (Children's Hosp...    36   6.8    3
(EJ790886) 1093017376824 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.3    3
(EK012590) 1092955206488 Global-Ocean-Sampling_GS-31-01-01-1...    32   7.6    3
(CU914283) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   8.0    3
(EK554026) 1095516147614 Global-Ocean-Sampling_GS-32-01-01-1...    32   8.1    3
(EK573774) 1095521099187 Global-Ocean-Sampling_GS-32-01-01-1...    32   8.3    3
(AC234209) Bos taurus Y Chr NOVECTOR CH240-385D8 (Children's...    36   8.3    3
(AC187533) Callithrix jacchus BAC clone CH259-75H12 from chr...    38   8.4    8
(AC192787) Gallus gallus BAC clone CH261-82A19 from chromoso...    44   8.4    1
(AC190152) Gallus gallus BAC clone CH261-171P12 from chromos...    44   8.4    1
(AC187509) Gallus gallus BAC clone CH261-175B19 from chromos...    44   8.4    1
(BV629060) S215P6308RB3.T0 Clara Pan troglodytes troglodytes...    44   8.4    1
(BV485289) S215P61244FD3.T0 Clara Pan troglodytes troglodyte...    44   8.4    1
(BV480458) rod87b06.g1 Clint Pan troglodytes verus STS genom...    44   8.4    1
(BV439388) S237P6216FD12.T0 PortugueseWaterDog Canis familia...    44   8.4    1
(AB136367) Homo sapiens DNA, STS on chromosome 3, D3S0046i, ...    44   8.4    1
(AL954375) Mouse DNA sequence from clone RP23-16F14 on chrom...    44   8.4    1
(AL844146) Mouse DNA sequence from clone RP24-89J1 on chromo...    44   8.4    1
(AL772211) Mouse DNA sequence from clone RP23-473B24 on chro...    44   8.4    1
(AL713854) Mouse DNA sequence from clone RP23-477E1 on chrom...    44   8.4    1
(AL645643) Mouse DNA sequence from clone RP23-253F13 on chro...    44   8.4    1
(AJ133879) Mus musculus sperm chromatin hypersensitive site,...    44   8.4    1
(AC160545) Mus musculus chromosome 1, clone RP23-217K18, com...    44   8.4    1
(AC159126) Mus musculus chromosome 8, clone RP23-182M11, com...    44   8.4    1
(AC154462) Mus musculus BAC clone RP24-165F12 from chromosom...    44   8.4    1
(AC122735) Mus musculus chromosome 3, clone RP23-215I1, comp...    44   8.4    1
(AC121135) Mus musculus chromosome 18, clone RP23-328A22, co...    44   8.4    1
(AC115357) Mus musculus BAC clone RP23-81J4 from chromosome ...    44   8.4    1
(AC113485) Mus musculus chromosome 19, clone RP23-346D12, co...    44   8.4    1
(AC113102) Mus musculus chromosome 15, clone RP23-320O9, com...    44   8.4    1
(AC107846) Mus musculus chromosome 1, clone RP23-309I23, com...    44   8.4    1
(AC107666) Mus musculus chromosome 5, clone RP23-111M3, comp...    44   8.4    1
(AC068913) Mus musculus strain 129/Sv clone ct7-362c13 map 2...    44   8.4    1
(AC068911) Mus musculus strain 129/Sv chromosome 2 clone ct7...    44   8.4    1
(CT005234) Pan troglodytes chromosome X clone PTB-147L24 map...    44   8.4    1
(CT005231) Pan troglodytes chromosome X clone PTB-024D11 map...    44   8.4    1
(AC212182) Macaca mulatta  BAC CH250-457C19 (Children's Hosp...    44   8.4    1
(AC147384) Pan troglodytes BAC clone RP43-158M15 from chromo...    44   8.4    1
(FJ160946) Utharomyces epallocaulus strain NRRL A-21843 18S ...    44   8.4    1
(FJ160945) Utharomyces epallocaulus strain NRRL A-15807 18S ...    44   8.4    1
(FJ160944) Utharomyces epallocaulus strain NRRL 3168 18S rib...    44   8.4    1
(FJ160943) Utharomyces epallocaulus strain ATCC 42705 18S ri...    44   8.4    1
(EU437104) Oxalis gracilis tRNA-Leu (trnL) gene, partial seq...    44   8.4    1
(EU437103) Oxalis callosa tRNA-Leu (trnL) gene, partial sequ...    44   8.4    1
(EU076469) Laguncularia racemosa clone Lr39 microsatellite s...    44   8.4    1
(AM459037) Vitis vinifera contig VV78X153336.4, whole genome...    44   8.4    1
(AJ582341) Oxalis oreophila plastid trnL gene and IGS, speci...    44   8.4    1
(AJ582329) Oxalis linearis plastid trnL gene and IGS, specim...    44   8.4    1
(AJ582299) Oxalis burkei plastid trnL gene and IGS, specimen...    44   8.4    1
(AJ582298) Oxalis blastorrhiza plastid trnL gene and IGS, sp...    44   8.4    1
(AJ582296) Oxalis aridicola plastid trnL gene and IGS, speci...    44   8.4    1
(AC233521) Solanum tuberosum chromosome 1 clone RH165C24, co...    44   8.4    1
(AC214284) Populus trichocarpa clone POP076-F15, complete se...    44   8.4    1
(AC189506) Brassica rapa subsp. pekinensis clone KBrB088E10,...    44   8.4    1
(AC189368) Brassica rapa subsp. pekinensis clone KBrB047A09,...    44   8.4    1
(AC189319) Brassica rapa subsp. pekinensis clone KBrB036H01,...    44   8.4    1
(AC175203) Sporobolomyces roseus clone JGIBAIF-5E21, complet...    44   8.4    1
(FB333796) Sequence 1322 from Patent WO2007110314.                 44   8.4    1
(DL489813) RECOMBINANT ANTIBODY COMPOSITION WHICH SPECIFICAL...    44   8.4    1
(DL489773) EFFECTOR FUNCTION ENHANCED RECOMBINANT ANTIBODY C...    44   8.4    1
(DL489756) DOMAIN EXCHANGED RECOMBINANT ANTIBODY COMPOSITION.      44   8.4    1
(DJ452293) Method for analysing genome using microsatellite ...    44   8.4    1
(DJ047936) CD10-specific antibody composition.                     44   8.4    1
(DI155118) Process for producing Antithrombin III composition.     44   8.4    1
(DD462022) RECOMBINANT ANTIBODY COMPOSITION.                       44   8.4    1
(DD431831) Gene Recombinant Erythropoietin composition.            44   8.4    1
(DD431806) Gene recombinant follicle stimulating hormone com...    44   8.4    1
(DD431785) Gene Recombinant Haptoglobin Composition.               44   8.4    1
(DD307435) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO...    44   8.4    1
(DD307082) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO...    44   8.4    1
(DD301009) NUCLEIC ACID AND POLYPEPTIDE SEQUENCES FROM LAWSO...    44   8.4    1
(DD152135) Fusion protein composition.                             44   8.4    1
(DD152031) Method of producing Antithrombin III composition.       44   8.4    1
(DD152009) IL-5 receptor-specific antibody composition.            44   8.4    1
(DD151990) CCR4-specific antibody composition.                     44   8.4    1
(DD151968) Human VFGF receptor Flt-1-specific antibody compo...    44   8.4    1
(DD151949) CELL IN WHICH GENOME IS MODIFIED.                       44   8.4    1
(DD151933) Ganglioside GM2-specific antibody composition.          44   8.4    1
(DD151869) Ganglioside GD3-specific antibody composition.          44   8.4    1
(CS789787) Sequence 1043 from Patent WO2005031001.                 44   8.4    1
(GP297592) Sequence 4634 from patent US 7510834.                   44   8.4    1
(GC700253) Sequence 15498 from patent US 6812339.                  44   8.4    1
(GC696928) Sequence 12173 from patent US 6812339.                  44   8.4    1
(FN376310) Schistosoma mansoni genome sequence supercontig S...    44   8.4    1
(AY337337) Tribolium castaneum strain GA-1 cytochrome P450 m...    44   8.4    1
(AF039716) Caenorhabditis elegans cosmid W03G9, complete seq...    44   8.4    1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    44   8.4    1
(AC084157) Caenorhabditis elegans cosmid Y46E12BR, complete ...    44   8.4    1
(AL450105) Human DNA sequence from clone RP11-519C17 on chro...    44   8.4    1
(AL365184) Human DNA sequence from clone RP11-80B9 on chromo...    44   8.4    1
(AL160152) Human DNA sequence from clone RP11-360H15 on chro...    44   8.4    1
(AL157700) Human DNA sequence from clone RP6-201G10 on chrom...    44   8.4    1
(AL139115) Human DNA sequence from clone RP11-335L15 on chro...    44   8.4    1
(AC105313) Homo sapiens BAC clone RP11-30P21 from 4, complet...    44   8.4    1
(AC066606) Homo sapiens chromosome 3 clone RP11-74E4 map 3p,...    44   8.4    1
(AC026200) Homo sapiens chromosome 3 clone RP11-534J21 map 3...    44   8.4    1
(AC023514) Homo sapiens chromosome 3 clone RP11-137G22 map 3...    44   8.4    1
(AC021500) Homo sapiens chromosome 8, clone RP11-135K1, comp...    44   8.4    1
(AC018840) Homo sapiens chromosome 3 clone RP11-13F6 map 3p,...    44   8.4    1
(AC018493) Homo sapiens chromosome 3 clone RP11-163M22 map 3...    44   8.4    1
(AC011327) Homo sapiens 3 BAC RP11-77I5 (Roswell Park Cancer...    44   8.4    1
(AC151491) Felis catus clone RP86-231M10, WORKING DRAFT SEQU...    44   8.4    1
(AC151398) Felis catus clone RP86-7N10, WORKING DRAFT SEQUEN...    44   8.4    1
(AC131460) Rattus norvegicus clone CH230-462K2, WORKING DRAF...    44   8.4    1
(AC130273) Papio anubis clone RP41-307O6, WORKING DRAFT SEQU...    44   8.4    1
(AC130231) Rattus norvegicus clone CH230-63L24, WORKING DRAF...    44   8.4    1
(AC126747) Rattus norvegicus clone CH230-7O17, WORKING DRAFT...    44   8.4    1
(AC119104) Rattus norvegicus clone CH230-135N8, WORKING DRAF...    44   8.4    1
(AC114383) Rattus norvegicus clone CH230-250I5, WORKING DRAF...    44   8.4    1
(AC114124) Rattus norvegicus clone CH230-40F15, *** SEQUENCI...    44   8.4    1
(AC111478) Rattus norvegicus clone CH230-85N15, WORKING DRAF...    44   8.4    1
(AC110327) Rattus norvegicus clone CH230-301H24, WORKING DRA...    44   8.4    1
(AC108649) Rattus norvegicus clone CH230-308I2, WORKING DRAF...    44   8.4    1
(AC107359) Rattus norvegicus clone CH230-208H13, *** SEQUENC...    44   8.4    1
(AC106562) Rattus norvegicus clone CH230-117P6, WORKING DRAF...    44   8.4    1
(AC106255) Rattus norvegicus clone CH230-215D21, WORKING DRA...    44   8.4    1
(AC106218) Rattus norvegicus clone CH230-82I9, WORKING DRAFT...    44   8.4    1
(AC096135) Rattus norvegicus clone CH230-11E5, *** SEQUENCIN...    44   8.4    1
(CU986287) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(CU914424) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(CU856674) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(CU856493) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(CU695338) Brassica rapa subsp. pekinensis clone KBrB081D18,...    44   8.4    1
(CU695332) Brassica rapa subsp. pekinensis clone KBrH127P20,...    44   8.4    1
(CU469061) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(CU468830) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(AC073752) Mus musculus clone RP23-332B13, WORKING DRAFT SEQ...    44   8.4    1
(AC067736) Homo sapiens chromosome 3 clone RP11-28P14, WORKI...    44   8.4    1
(AC061995) Homo sapiens chromosome 17 clone RP11-417L15 map ...    44   8.4    1
(AC026586) Homo sapiens chromosome 11 clone RP11-564L17 map ...    44   8.4    1
(CU466471) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(CU464000) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(AL359772) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.4    1
(AL158142) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.4    1
(AF276756) Homo sapiens chromosome 8 clone RP11-207B12, WORK...    44   8.4    1
(AC232905) Mustela putorius furo clone CH237-67O24, WORKING ...    44   8.4    1
(AC219128) Pteropus vampyrus clone CH279-336H17, WORKING DRA...    44   8.4    1
(AC217725) Solanum tuberosum chromosome 1 clone RH099H16, **...    44   8.4    1
(AC211841) Chlorocebus aethiops clone CH252-80I11, WORKING D...    44   8.4    1
(AC199592) Macaca mulatta clone CH250-134M10, WORKING DRAFT ...    44   8.4    1
(AC189235) Brassica rapa subsp. pekinensis clone KBrB014D14,...    44   8.4    1
(AC181693) Strongylocentrotus purpuratus clone R3-1036I2, WO...    44   8.4    1
(AC178539) Strongylocentrotus purpuratus clone R3-3031E4, WO...    44   8.4    1
(AC022172) Homo sapiens chromosome 4 clone RP11-7N5, WORKING...    44   8.4    1
(AC022067) Homo sapiens chromosome 1 clone RP11-483D1 map 1,...    44   8.4    1
(AC021359) Homo sapiens clone RP11-25B4, WORKING DRAFT SEQUE...    44   8.4    1
(AC006845) Caenorhabditis elegans clone Y119C1X, *** SEQUENC...    44   8.4    1
(BH156498) ENTTE47TR Entamoeba histolytica Sheared DNA Entam...    44   8.4    1
(BH083845) RPCI-24-96H24.TVB RPCI-24 Mus musculus genomic cl...    44   8.4    1
(AZ710851) RPCI-24-132I12.TVB RPCI-24 Mus musculus genomic c...    44   8.4    1
(AZ667900) ENTGZ34TR Entamoeba histolytica Sheared DNA Entam...    44   8.4    1
(FT080453) Rattus norvegicus DNA, BAC clone: RNB2-243D11, 3'...    44   8.4    1
(AQ349685) RPCI11-126P22.TJ RPCI-11 Homo sapiens genomic clo...    44   8.4    1
(FI130634) SGM647 Sugarcane cv. Co7201 microsatellite enrich...    44   8.4    1
(FI023342) CHO_OF6932xi21r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   8.4    1
(FH466665) CHO_OF4960xo17f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   8.4    1
(FH098806) CHO_OF3033xe06r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   8.4    1
(FH028857) CHO_OF3167xd06r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   8.4    1
(ET745803) CHO_OF291xj21f1.ab1 CHO_OF Nicotiana tabacum geno...    44   8.4    1
(ET736605) CHO_OF186xj21f1.ab1 CHO_OF Nicotiana tabacum geno...    44   8.4    1
(ET627423) fcg3x.308750d20.f C. graminicola genomic sequence...    44   8.4    1
(ER737395) SB_BBc77-J17.R SB_BBc Sorghum bicolor genomic 3',...    44   8.4    1
(ER687664) SB_BBc97-C23.R SB_BBc Sorghum bicolor genomic 3',...    44   8.4    1
(ER639283) SB_BBc105-D24.F SB_BBc Sorghum bicolor genomic 5'...    44   8.4    1
(ER611547) 1093016313031 Global-Ocean-Sampling_GS-36-01-01-2...    44   8.4    1
(ER600952) 1093016244104 Global-Ocean-Sampling_GS-36-01-01-2...    44   8.4    1
(ER589474) 1093016190344 Global-Ocean-Sampling_GS-36-01-01-2...    44   8.4    1
(ER502100) 1093015403889 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.4    1
(ER469325) 1092963943060 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.4    1
(ER454662) 1092963863714 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.4    1
(ER452382) 1092963854364 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.4    1
(ER442589) 1092963818778 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.4    1
(ER416438) 1092963672402 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.4    1
(ER297847) 1092343661046 Global-Ocean-Sampling_GS-34-01-01-1...    44   8.4    1
(EK410570) 1095505162487 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK402883) 1095469550668 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK397330) 1095469526067 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK338332) 1095467050687 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK266196) 1095462226859 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK240237) 1095460219448 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK225128) 1095460155993 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK156388) 1095458006893 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK097952) 1092962050877 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EK025690) 1092955365513 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.4    1
(EJ952733) 1093018956426 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ893467) 1093018455343 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ892037) 1093018448037 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ864083) 1093018242285 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ827005) 1093017565207 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ759872) 1092963119335 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ745121) 1092962053294 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ739381) 1092962005113 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ736161) 1092961155806 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ734733) 1092961086186 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ662591) 1092955029804 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ649440) 1092953005729 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ637400) 1093006100676 Global-Ocean-Sampling_GS-29-01-01-1...    44   8.4    1
(EJ549581) 1092959431396 Global-Ocean-Sampling_GS-29-01-01-1...    44   8.4    1
(EJ506929) 1095403723177 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ498661) 1095403593242 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ482851) 1095403480565 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ478202) 1095403453737 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ454949) 1093017367052 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ453082) 1093015455529 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ424954) 1093012259706 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ416645) 1093012186579 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ409679) 1093012126482 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ399594) 1093012027110 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ330230) 1092963430477 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.4    1
(EJ227533) 1092402510662 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.4    1
(EJ181191) 1092344125243 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.4    1
(EJ179623) 1092344114769 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.4    1
(EJ118447) 1092343362614 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.4    1
(EJ111621) 1092343156240 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.4    1
(EJ030285) 1095454044740 Global-Ocean-Sampling_GS-26-01-01-1...    44   8.4    1
(EJ002425) 1091120941349 Global-Ocean-Sampling_GS-26-01-01-1...    44   8.4    1
(EI961333) SB_BBc285-J04.R SB_BBc Sorghum bicolor genomic 3'...    44   8.4    1
(EI959958) SB_BBc63-B05.R SB_BBc Sorghum bicolor genomic 3',...    44   8.4    1

>(C90654) Dictyostelium discoideum slug cDNA, clone SSI878.
          Length = 579

 Score =  624 bits (315), Expect = e-174
 Identities = 315/315 (100%)
 Strand = Plus / Plus


Query: 226 aaccacaaggtgactttgatatttatttagaagagaaaagaaagaaagaattacaagaag 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  aaccacaaggtgactttgatatttatttagaagagaaaagaaagaaagaattacaagaag 70


Query: 286 catctgatttagaaaacagtaaaaatttattctctggtttatccgttaaagaatcatcat 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  catctgatttagaaaacagtaaaaatttattctctggtttatccgttaaagaatcatcat 130


Query: 346 caggtgaaccaatttcaacttttattccaaaaactgaaaaagattttgaacaatattctc 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 caggtgaaccaatttcaacttttattccaaaaactgaaaaagattttgaacaatattctc 190


Query: 406 aaatcgtttctgattatttattaaaatatgattcatcaattcattatgctactttcttta 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaatcgtttctgattatttattaaaatatgattcatcaattcattatgctactttcttta 250


Query: 466 aatcattaatgaaaaaagttttagttaatgtatcatcatcggatatgaatgatatttcaa 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aatcattaatgaaaaaagttttagttaatgtatcatcatcggatatgaatgatatttcaa 310


Query: 526 aaactttaacagttt 540
           |||||||||||||||
Sbjct: 311 aaactttaacagttt 325

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 841,190,841
Number of extensions: 62283358
Number of successful extensions: 8613540
Number of sequences better than 10.0: 582
Length of query: 798
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 774
Effective length of database: 102,084,959,077
Effective search space: 79013758325598
Effective search space used: 79013758325598
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05497-1 (Contig-U05497-1Q) /CSM_Contig/Contig-U05497-1Q.Seq.d
         (798 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KI0) RecName: Full=Eukaryotic translation initiation factor ...   306   1e-84
BT040914_1(BT040914|pid:none) Zea mays full-length cDNA clone ZM...    80   6e-14
EU964624_1(EU964624|pid:none) Zea mays clone 280417 eukaryotic t...    80   6e-14
BT057425_1(BT057425|pid:none) Salmo salar clone ssal-evd-574-301...    80   8e-14
BT057199_1(BT057199|pid:none) Salmo salar clone ssal-evf-501-098...    80   8e-14
AK073059_1(AK073059|pid:none) Oryza sativa Japonica Group cDNA c...    75   2e-12
AB118008_1(AB118008|pid:none) Oryza sativa Japonica Group bip121...    75   2e-12
EU973898_1(EU973898|pid:none) Zea mays clone 423928 eukaryotic t...    74   4e-12
DQ214970_1(DQ214970|pid:none) Taeniopygia guttata clone 0058P003...    74   4e-12
(Q7SXU0) RecName: Full=Eukaryotic translation initiation factor ...    73   9e-12
AC026480_7(AC026480|pid:none) Arabidopsis thaliana chromosome 1 ...    72   2e-11
(Q5ZKA4) RecName: Full=Eukaryotic translation initiation factor ...    72   2e-11
AK118365_1(AK118365|pid:none) Arabidopsis thaliana mRNA for (BT0...    70   6e-11
AK082048_1(AK082048|pid:none) Mus musculus 16 days embryo head c...    70   8e-11
(A0JPM9) RecName: Full=Eukaryotic translation initiation factor ...    70   1e-10
(Q66JS6) RecName: Full=Eukaryotic translation initiation factor ...    70   1e-10
(Q0VCU8) RecName: Full=Eukaryotic translation initiation factor ...    69   1e-10
(A7RSH7) RecName: Full=Eukaryotic translation initiation factor ...    69   2e-10
EF575983_1(EF575983|pid:none) Oryza sativa (indica cultivar-grou...    69   2e-10
(O75822) RecName: Full=Eukaryotic translation initiation factor ...    69   2e-10
U97670_1(U97670|pid:none) Homo sapiens eukaryotic translation in...    68   3e-10
EF676164_1(EF676164|pid:none) Picea sitchensis clone WS02716_D01...    67   7e-10
(Q803P1) RecName: Full=Eukaryotic translation initiation factor ...    66   2e-09
BC088509_1(BC088509|pid:none) Xenopus tropicalis eukaryotic tran...    65   2e-09
BC108355_1(BC108355|pid:none) Mus musculus eukaryotic translatio...    65   3e-09
EF144750_1(EF144750|pid:none) Populus trichocarpa clone WS01117_...    62   2e-08
AC112160_16(AC112160|pid:none) Oryza sativa (japonica cultivar-g...    60   6e-08
(Q7K550) RecName: Full=Eukaryotic translation initiation factor ...    56   2e-06
(B4J4E7) RecName: Full=Eukaryotic translation initiation factor ...    56   2e-06
AY190959_3(AY190959|pid:none) Drosophila willistoni clone DWIF01...    54   8e-06
(B4KTH6) RecName: Full=Eukaryotic translation initiation factor ...    53   1e-05
(Q8I1G8) RecName: Full=Eukaryotic translation initiation factor ...    52   2e-05
(B4NX24) RecName: Full=Eukaryotic translation initiation factor ...    52   2e-05
(Q0ZB73) RecName: Full=Eukaryotic translation initiation factor ...    49   1e-04
(Q7S931) RecName: Full=Eukaryotic translation initiation factor ...    49   1e-04
(Q16MK2) RecName: Full=Eukaryotic translation initiation factor ...    49   2e-04
BC006055_1(BC006055|pid:none) Mus musculus eukaryotic translatio...    47   6e-04
(B4GIF2) RecName: Full=Eukaryotic translation initiation factor ...    47   7e-04
AF090923_1(AF090923|pid:none) Homo sapiens clone HQ0391 PRO0391 ...    47   0.001
BT077900_1(BT077900|pid:none) Lepeophtheirus salmonis Pacific fo...    44   0.005
(Q05775) RecName: Full=Eukaryotic translation initiation factor ...    40   0.068
(Q7NAZ6) RecName: Full=Acetate kinase;          EC=2.7.2.1; AltN...    39   0.26
BT063254_1(BT063254|pid:none) Zea mays full-length cDNA clone ZM...    38   0.44
AK120191_1(AK120191|pid:none) Oryza sativa Japonica Group cDNA c...    38   0.44
AE001439_1243(AE001439|pid:none) Helicobacter pylori J99, comple...    38   0.44
CP001072_1303(CP001072|pid:none) Helicobacter pylori Shi470, com...    38   0.44
AC149601_7(AC149601|pid:none) Medicago truncatula chromosome 7 c...    37   0.57
CP001107_439(CP001107|pid:none) Eubacterium rectale ATCC 33656, ...    37   0.57
CP001173_1247(CP001173|pid:none) Helicobacter pylori G27, comple...    37   0.75
EF537330_1(EF537330|pid:none) Borrelia burgdorferi strain MI409 ...    37   0.75
CP001258_7(CP001258|pid:none) Borrelia burgdorferi 156a plasmid ...    37   0.98
EF537357_1(EF537357|pid:none) Borrelia burgdorferi strain MI403 ...    37   0.98
AY696313_1(AY696313|pid:none) Borrelia burgdorferi strain JD1 pl...    37   0.98
EF537325_1(EF537325|pid:none) Borrelia burgdorferi strain 217_5 ...    37   0.98
EF537322_1(EF537322|pid:none) Borrelia burgdorferi strain MI411 ...    37   0.98
EF537321_1(EF537321|pid:none) Borrelia burgdorferi strain OEA11 ...    37   0.98
EF537329_1(EF537329|pid:none) Borrelia burgdorferi strain PO7 BB...    37   0.98
CP000685_2693(CP000685|pid:none) Flavobacterium johnsoniae UW101...    35   2.2
AF213179_1(AF213179|pid:none) Borrelia afzelii fibronectin bindi...    35   2.2
CP000025_1282(CP000025|pid:none) Campylobacter jejuni RM1221, co...    35   2.2
(Q6BJ82) RecName: Full=Eukaryotic translation initiation factor ...    35   2.8
AE017243_266(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp...    35   2.8
AP009608_578(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    35   2.8
CP001037_2476(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    35   2.8
CP001186_5408(CP001186|pid:none) Bacillus cereus G9842, complete...    35   2.8
(Q6CMJ8) RecName: Full=Eukaryotic translation initiation factor ...    35   3.7
AE001362_19(AE001362|pid:none) Plasmodium falciparum 3D7 chromos...    35   3.7
AL111168_1124(AL111168|pid:none) Campylobacter jejuni subsp. jej...    35   3.7
CP000814_1132(CP000814|pid:none) Campylobacter jejuni subsp. jej...    35   3.7
CP000478_3946(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    35   3.7
CP001468_14(CP001468|pid:none) Borrelia spielmanii A14S plasmid ...    34   4.8
AF472526_1(AF472526|pid:none) Borrelia afzelii strain 570 BBK32 ...    34   4.8
(Q10221) Uncharacterized protein C4H3.14c.  &CU329670_1591(CU329...    34   4.8
(A3DI04) RecName: Full=Seryl-tRNA synthetase;          EC=6.1.1....    34   4.8
CP001309_12(CP001309|pid:none) Borrelia garinii PBr plasmid PBr_...    34   4.8
AF472528_1(AF472528|pid:none) Borrelia afzelii strain 600 BBK32 ...    34   4.8
AE014186_404(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    34   6.3
CP001176_5344(CP001176|pid:none) Bacillus cereus B4264, complete...    34   6.3
CP000236_1055(CP000236|pid:none) Ehrlichia chaffeensis str. Arka...    34   6.3
(Q6FNM7) RecName: Full=Mediator of RNA polymerase II transcripti...    33   8.3
AM398681_1912(AM398681|pid:none) Flavobacterium psychrophilum JI...    33   8.3
CP000725_2006(CP000725|pid:none) Streptococcus gordonii str. Cha...    33   8.3
AE008384_1031(AE008384|pid:none) Methanosarcina mazei strain Goe...    33   8.3
(A6UR78) RecName: Full=Glutamyl-tRNA reductase;          Short=G...    33   8.3
CP000478_3283(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    33   8.3
CP000361_1272(CP000361|pid:none) Arcobacter butzleri RM4018, com...    33   8.3
AE015927_2180(AE015927|pid:none) Clostridium tetani E88, complet...    33   8.3
CP001348_2070(CP001348|pid:none) Clostridium cellulolyticum H10,...    33   8.3

>(Q54KI0) RecName: Full=Eukaryotic translation initiation factor 3
           subunit J;          Short=eIF3j; AltName:
           Full=Eukaryotic translation initiation factor 3 subunit
           1; AltName: Full=eIF-3-alpha;
          Length = 219

 Score =  306 bits (784), Expect(2) = 1e-84
 Identities = 159/177 (89%), Positives = 159/177 (89%)
 Frame = +3

Query: 18  MSDWSDLQKDKWINENREVEEVDAWDASSEDXXXXXXXXXXXXXXXXXXQLTKKQALQRA 197
           MSDWSDLQKDKWINENREVEEVDAWDASSED                  QLTKKQALQRA
Sbjct: 1   MSDWSDLQKDKWINENREVEEVDAWDASSEDEVEKVEEEIKEPPKPVVKQLTKKQALQRA 60

Query: 198 IELKEKELKEPQGDFDIYLEEKRKKELQEASDLENSKNLFSGLSVKESSSGEPISTFIPK 377
           IELKEKELKEPQGDFDIYLEEKRKKELQEASDLENSKNLFSGLSVKESSSGEPISTFIPK
Sbjct: 61  IELKEKELKEPQGDFDIYLEEKRKKELQEASDLENSKNLFSGLSVKESSSGEPISTFIPK 120

Query: 378 TEKDFEQYSQIVSDYLLKYDSSIHYATFFKSLMKKVLVNVSSSDMNDISKTLTVLIN 548
           TEKDFEQYSQIVSDYLLKYDSSIHYATFFKSLMKKVLVNVSSSDMNDISKTLTVLIN
Sbjct: 121 TEKDFEQYSQIVSDYLLKYDSSIHYATFFKSLMKKVLVNVSSSDMNDISKTLTVLIN 177

 Score = 30.8 bits (68), Expect(2) = 1e-84
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 608 VAPKKIHMGNELQ 646
           VAPKKIHMGNELQ
Sbjct: 196 VAPKKIHMGNELQ 208

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 758,965,576
Number of extensions: 10755789
Number of successful extensions: 48085
Number of sequences better than 10.0: 88
Number of HSP's gapped: 47934
Number of HSP's successfully gapped: 89
Length of query: 266
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 140
Effective length of database: 649,361,233
Effective search space: 90910572620
Effective search space used: 90910572620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.19  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U05497-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0