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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05485-1
Contig ID Contig-U05485-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05485-1 (Contig-U05485-1Q) /CSM_Contig/Contig-U05485-1Q.Seq.d
AAAAAAAAACCTATTTATTTTAACAATCAAATAATTATTTATTTTTTAAA
ACAAAAAAAAAAAAAAAAAAAAGATATATTTACAATAAAACTATTTATTT
TAAATCAAAAACCATTTGGTATTTGATATTAATTTTTTTTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAATA
Gap no gap
Contig length 173
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2544412
End point 2544271
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05485
List of clone(s) 

est1=SSI782E,1,174
Translated Amino Acid sequence 
kktylf*QSNNYLFFKTKKKKKKRYIYNKTIYFKSKTIWYLILIFFKKKKKKKKKKI
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkpiyfnnqiiiyflkqkkkkkkdiftiklfilnqkpfgi*y*fflkkkkkkkkkk


Frame B:
kknlfiltik*lfif*nkkkkkkkiylq*nylf*iknhlvfdinff*kkkkkkkkkn


Frame C:
kktylf*QSNNYLFFKTKKKKKKRYIYNKTIYFKSKTIWYLILIFFKKKKKKKKKKI
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05485-1 (Contig-U05485-1Q)
/CSM_Contig/Contig-U05485-1Q.Seq.d
         (173 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05485-1 (Contig-U05485-1Q) /CSM_Contig/Conti...   135  2e-32
Contig-U12275-1 (Contig-U12275-1Q) /CSM_Contig/Conti...    38  0.003
Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Conti...    38  0.003
Contig-U09446-1 (Contig-U09446-1Q) /CSM_Contig/Conti...    38  0.003
Contig-U05915-1 (Contig-U05915-1Q) /CSM_Contig/Conti...    38  0.003
Contig-U04072-1 (Contig-U04072-1Q) /CSM_Contig/Conti...    38  0.003
Contig-U14849-1 (Contig-U14849-1Q) /CSM_Contig/Conti...    36  0.011
Contig-U13959-1 (Contig-U13959-1Q) /CSM_Contig/Conti...    36  0.011
Contig-U13115-1 (Contig-U13115-1Q) /CSM_Contig/Conti...    36  0.011
Contig-U12487-1 (Contig-U12487-1Q) /CSM_Contig/Conti...    36  0.011

>Contig-U05485-1 (Contig-U05485-1Q) /CSM_Contig/Contig-U05485-1Q.Seq.d
          Length = 173

 Score =  135 bits (68), Expect = 2e-32
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                       
Query: 73  gatatatttacaataaaactatttattttaaatcaaaaaccatttggtatttgatattaa 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  gatatatttacaataaaactatttattttaaatcaaaaaccatttggtatttgatattaa 132

                   
Query: 133 tttttttt 140
           ||||||||
Sbjct: 133 tttttttt 140


 Score =  103 bits (52), Expect = 6e-23
 Identities = 52/52 (100%)
 Strand = Plus / Plus

                                                              
Query: 1  aaaaaaaaacctatttattttaacaatcaaataattatttattttttaaaac 52
          ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aaaaaaaaacctatttattttaacaatcaaataattatttattttttaaaac 52


>Contig-U12275-1 (Contig-U12275-1Q) /CSM_Contig/Contig-U12275-1Q.Seq.d
          Length = 873

 Score = 38.2 bits (19), Expect = 0.003
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 1  aaaaaaaaacctatttattttaa 23
          ||||||||| |||||||||||||
Sbjct: 82 aaaaaaaaaactatttattttaa 60


 Score = 36.2 bits (18), Expect = 0.011
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 87  aaaactatttattttaaa 104
           ||||||||||||||||||
Sbjct: 76  aaaactatttattttaaa 59


>Contig-U09751-1 (Contig-U09751-1Q) /CSM_Contig/Contig-U09751-1Q.Seq.d
          Length = 1105

 Score = 38.2 bits (19), Expect = 0.003
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 29   aaataattatttattttttaaaa 51
            |||||| ||||||||||||||||
Sbjct: 1055 aaataaatatttattttttaaaa 1077


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9719
Number of Sequences: 6905
Number of extensions: 9719
Number of successful extensions: 3932
Number of sequences better than 10.0: 589
length of query: 173
length of database: 5,674,871
effective HSP length: 15
effective length of query: 158
effective length of database: 5,571,296
effective search space: 880264768
effective search space used: 880264768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.28
Homology vs DNA 
Query= Contig-U05485-1 (Contig-U05485-1Q) /CSM_Contig/Contig-U05485-1Q.Seq.d
         (173 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90305) Dictyostelium discoideum slug cDNA, clone SSI782.        119   7e-43  2
(AC234958) Medicago truncatula clone mth2-155j4, WORKING DRA...    56   4e-04  1
(CU464114) Zebrafish DNA sequence from clone CH211-287I21 in...    44   0.001  3
(BX537353) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.005  2
(AL954309) Zebrafish DNA sequence from clone CH211-213D2 in ...    38   0.005  2
(BX537340) Zebrafish DNA sequence from clone DKEYP-93A2 in l...    38   0.005  2
(AC144404) Medicago truncatula chromosome 8 clone mth2-19f21...    38   0.005  2
(AM442854) Vitis vinifera contig VV78X097044.5, whole genome...    38   0.020  2
(AC130814) Homo sapiens BAC clone RP11-599B8 from 2, complet...    32   0.025  6
(CR848807) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.026  1
(CP001568) Borrelia burgdorferi Bol26 plasmid Bol26_cp26, co...    50   0.026  1
(CP001550) Borrelia burgdorferi 29805 plasmid 29805_cp26, co...    50   0.026  1
(CP001535) Borrelia burgdorferi 118a plasmid 118a_cp26, comp...    50   0.026  1
(CP001493) Borrelia burgdorferi 94a plasmid 94a_cp26, comple...    50   0.026  1
(CP001484) Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_cp...    50   0.026  1
(CP001446) Borrelia burgdorferi WI91-23 plasmid WI91-23_cp26...    50   0.026  1
(CP001422) Borrelia burgdorferi 64b plasmid 64b_cp26, comple...    50   0.026  1
(CP001375) Borrelia burgdorferi 72a plasmid 72a_cp26, comple...    50   0.026  1
(CP001271) Borrelia burgdorferi 156a plasmid 156a_cp26, comp...    50   0.026  1
(CP001250) Borrelia afzelii ACA-1 plasmid cp26, complete seq...    50   0.026  1
(CP001212) Borrelia burgdorferi ZS7 plasmid ZS7_cp26, comple...    50   0.026  1
(CP000402) Borrelia afzelii PKo plasmid cp27, complete seque...    50   0.026  1
(AF006036) Borrelia burgdorferi N40 H7 unknown genes.              50   0.026  1
(AE000792) Borrelia burgdorferi B31 plasmid cp26, complete s...    50   0.026  1
(AC092594) Homo sapiens BAC clone RP11-78J22 from 2, complet...    32   0.058  6
(X70850) E.histolytica gene for surface lectin.                    30   0.059  4
(AC173404) Bos taurus clone CH240-122B21, WORKING DRAFT SEQU...    36   0.064  2
(AC223269) Bos taurus clone CH240-423N18, WORKING DRAFT SEQU...    36   0.064  2
(AC185056) Bos taurus clone CH240-189G16, WORKING DRAFT SEQU...    36   0.065  2
(CU856506) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.065  2
(CZ932477) 253181 Tomato EcoRI BAC Library Solanum lycopersi...    36   0.077  2
(AM474613) Vitis vinifera contig VV78X136733.5, whole genome...    38   0.079  3
(AC146722) Medicago truncatula clone mth2-23c16, complete se...    38   0.079  3
(CZ514269) GMW2-40K24a.b1 GMW2 Glycine max genomic, genomic ...    36   0.081  2
(FI243191) CccaBb009-E6JR CccABb Cajanus cajan genomic clone...    40   0.082  2
(FI267034) CccaBb063-C20JF CccABb Cajanus cajan genomic clon...    40   0.082  2
(CG936830) MBEGV23TR mth2 Medicago truncatula genomic clone ...    38   0.082  2
(CU179679) Pig DNA sequence from clone CH242-296A6 on chromo...    48   0.10   1
(AC160579) Bos taurus clone CH240-84B24, WORKING DRAFT SEQUE...    48   0.10   1
(CU302356) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.10   1
(AC221997) Bos taurus clone CH240-375C5, WORKING DRAFT SEQUE...    48   0.10   1
(AC204446) Nomascus leucogenys leucogenys clone CH271-392G14...    48   0.10   1
(AC183182) Bos taurus clone CH240-99I24, WORKING DRAFT SEQUE...    48   0.10   1
(AC172431) Bos taurus clone CH240-89H21, WORKING DRAFT SEQUE...    48   0.10   1
(BZ890286) CH240_190O16.TV CHORI-240 Bos taurus genomic clon...    48   0.10   1
(BH770436) LLMGtag206 MG1363 Random Sequence Tag Library Lac...    48   0.10   1
(EL919059) NY4Th2_27_A11.b2_A039 NY4 theronts Ichthyophthiri...    48   0.10   1
(GE432677) 294533370 Nasonia vitripennis Adult Male Nasonia ...    48   0.10   1
(AM406671) Lactococcus lactis subsp. cremoris MG1363, comple...    48   0.10   1
(BF967911) 602287766T1 NIH_MGC_96 Homo sapiens cDNA clone IM...    28   0.11   4
(AX345595) Sequence 666 from Patent WO0200928.                     44   0.11   2
(AM436545) Vitis vinifera contig VV78X250942.3, whole genome...    46   0.13   2
(BX901881) Zebrafish DNA sequence from clone CH211-138A18 in...    36   0.14   3
(AM482375) Vitis vinifera contig VV79X002059.2, whole genome...    28   0.22   3
(BX842687) Zebrafish DNA sequence from clone DKEY-97L11 in l...    38   0.24   2
(AC213012) Populus trichocarpa clone POP011-N24, complete se...    36   0.24   2
(AC218678) Bos taurus clone CH240-297G5, WORKING DRAFT SEQUE...    34   0.24   2
(AC171358) Bos taurus clone CH240-272P8, WORKING DRAFT SEQUE...    34   0.24   2
(DU858000) 50579 Tomato HindIII BAC Library Solanum lycopers...    34   0.24   2
(EJ109222) 1092343147728 Global-Ocean-Sampling_GS-27-01-01-1...    44   0.25   2
(BX321889) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   0.26   5
(AZ558065) RPCI-23-215M13.TJ RPCI-23 Mus musculus genomic cl...    30   0.28   3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    40   0.30   6
(DU849263) 43861 Tomato HindIII BAC Library Solanum lycopers...    34   0.30   2
(ER595052) 1093016217839 Global-Ocean-Sampling_GS-36-01-01-2...    36   0.30   2
(EI376366) POTDF96TF Solanum tuberosum RHPOTKEY BAC ends Sol...    38   0.31   2
(ER451431) 1092963850728 Global-Ocean-Sampling_GS-35-01-01-1...    32   0.31   2
(AM443207) Vitis vinifera contig VV78X192401.9, whole genome...    38   0.34   3
(AC116918) Dictyostelium discoideum chromosome 2 map 6143698...    42   0.35   4
(FF326689) 280429619 Pea aphid whole body normalized full le...    34   0.41   2
(AM458466) Vitis vinifera contig VV78X151607.35, whole genom...    46   0.41   1
(GC700599) Sequence 15844 from patent US 6812339.                  46   0.41   1
(AL844506) Plasmodium falciparum 3D7 chromosome 7.                 46   0.41   1
(AC090409) Homo sapiens chromosome 18, clone RP11-879F14, co...    46   0.41   1
(AC018764) Homo sapiens chromosome 5 clone CTD-2327L5, compl...    46   0.41   1
(AC008434) Homo sapiens chromosome 5 clone CTC-325J23, compl...    46   0.41   1
(AC006203) Homo sapiens chromosome 18, clone hRPK.453_M_1, c...    46   0.41   1
(AC103555) Rattus norvegicus clone CH230-141I14, WORKING DRA...    46   0.41   1
(AP001655) Homo sapiens genomic DNA, chromosome 18q21 clone:...    46   0.41   1
(AP001654) Homo sapiens genomic DNA, chromosome 18q21 clone:...    46   0.41   1
(AC193664) Zea mays chromosome 4 clone CH201-346B20; ZMMBBc0...    46   0.41   1
(AC180698) Strongylocentrotus purpuratus clone R3-3087F16, W...    46   0.41   1
(AC180693) Strongylocentrotus purpuratus clone R3-3087B14, W...    46   0.41   1
(AC180102) Strongylocentrotus purpuratus clone R3-4008B13, W...    46   0.41   1
(AC175933) Strongylocentrotus purpuratus clone R3-16A05, WOR...    46   0.41   1
(AC171278) Bos taurus clone CH240-70K8, WORKING DRAFT SEQUEN...    46   0.41   1
(BH316399) CH230-88K18.TJ CHORI-230 Segment 1 Rattus norvegi...    46   0.41   1
(ER466582) 1092963926083 Global-Ocean-Sampling_GS-35-01-01-1...    46   0.41   1
(ER443753) 1092963823037 Global-Ocean-Sampling_GS-35-01-01-1...    46   0.41   1
(EJ765299) 1092963200849 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.41   1
(CW637543) OA_ABa0172N05.f OA_ABa Oryza australiensis genomi...    46   0.41   1
(CC816174) 1O0001A08F Oxytricha plasmid UUGC1O library Sterk...    46   0.41   1
(BX211308) Danio rerio genomic clone DKEY-241N12, genomic su...    46   0.41   1
(DT453875) JGI_CABK10897.fwd NIH_XGC_tropSpl1 Xenopus (Silur...    46   0.41   1
(DB780155) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB780034) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB779917) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB778846) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB778456) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB778115) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB777198) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB776223) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB775696) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB774149) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB773291) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB772492) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB768306) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB761024) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB759365) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB756472) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(DB755837) Apis mellifera head cDNA, RIKEN full-length enric...    46   0.41   1
(AJ831662) Zygaena truchmena ferganica mitochondrial tRNA-Le...    36   0.42   2
(AJ831659) Zygaena transpamirina andarabensis mitochondrial ...    36   0.42   2
(U10402) Caenorhabditis elegans cosmid C34E10, complete sequ...    36   0.43   3
(CB856221) ri49f09.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo...    32   0.45   3
(AF355103) Pleurotus ostreatus linear mitochondrial plasmid ...    44   0.46   2
(EK273562) 1095462267595 Global-Ocean-Sampling_GS-31-01-01-1...    30   0.51   4
(AC221775) Bos taurus clone CH240-385P16, WORKING DRAFT SEQU...    26   0.59   3
(BF299363) 067PbE08 Pb cDNA #20, Charles Yowell and Jane Car...    30   0.59   3
(BX927399) Zebrafish DNA sequence from clone DKEY-35A22 in l...    36   0.59   2
(DN328452) LIB3174-004-Q1-K1-C12 LIB3174 Canis lupus familia...    30   0.64   3
(AC129091) Medicago truncatula clone mth2-15j7, complete seq...    36   0.64   4
(CE525683) tigr-gss-dog-17000365755800 Dog Library Canis lup...    34   0.66   2
(FP102950) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.66   3
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    40   0.67   8
(FF320739) 280410143 Pea aphid whole body normalized full le...    34   0.69   2
(EX634943) 256597946 Pea aphid whole body normalized full le...    30   0.70   3
(DX410060) SOYFU94TV LargeInsertSoybeanGenLibBuild4 Glycine ...    38   0.71   2
(CU329671) Schizosaccharomyces pombe chromosome II.                36   0.71   2
(EX647496) 256717848 Pea aphid whole body normalized full le...    34   0.73   2
(CN758717) ID0AAA22DH12RM1 ApMS Acyrthosiphon pisum cDNA clo...    34   0.73   2
(CN586475) USDA-FP_129547 Acyrthosiphon pisum, Pea Aphid Acy...    34   0.74   2
(FI502277) AHT1B5RGH004-C21TP AHT1BS-Rearray Arachis hypogae...    36   0.75   3
(FF325273) 280424503 Pea aphid whole body normalized full le...    30   0.75   3
(FF325690) 280424799 Pea aphid whole body normalized full le...    34   0.75   2
(FF326194) 280428058 Pea aphid whole body normalized full le...    34   0.76   2
(FF327163) 280433050 Pea aphid whole body normalized full le...    34   0.77   2
(EX643806) 256654316 Pea aphid whole body normalized full le...    34   0.77   2
(EX625091) 255429582 Pea aphid whole body normalized full le...    34   0.77   2
(BZ019051) oei56c08.g1 B.oleracea002 Brassica oleracea genom...    32   0.78   3
(EX625225) 255429898 Pea aphid whole body normalized full le...    34   0.78   2
(EX627909) 255451349 Pea aphid whole body normalized full le...    30   0.78   3
(EX631538) 255508788 Pea aphid whole body normalized full le...    30   0.80   3
(AC225483) Medicago truncatula clone mth2-25o13, complete se...    40   0.80   4
(EX642716) 256647978 Pea aphid whole body normalized full le...    30   0.80   3
(FF316789) 280382408 Pea aphid whole body normalized full le...    34   0.81   2
(EX612134) 255379893 Pea aphid whole body normalized full le...    34   0.81   2
(EX604287) 255344080 Pea aphid whole body normalized full le...    34   0.82   2
(EX618248) 255403549 Pea aphid whole body normalized full le...    34   0.82   2
(FF339236) 280473446 Pea aphid whole body normalized full le...    34   0.83   2
(FF319869) 280405439 Pea aphid whole body normalized full le...    34   0.83   2
(EK342219) 1095467066734 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.83   2
(CE239944) tigr-gss-dog-17000333422184 Dog Library Canis lup...    34   0.83   2
(AC183496) Brassica oleracea, *** SEQUENCING IN PROGRESS ***.      36   0.83   2
(AC134823) Medicago truncatula chromosome 6 clone mth2-20d18...    40   0.84   4
(EK030048) 1092955400420 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.85   2
(EX618353) 255403987 Pea aphid whole body normalized full le...    34   0.85   2
(CU694797) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.87   2
(AC152428) Bos taurus clone CH240-6A5, WORKING DRAFT SEQUENC...    32   0.88   2
(AP002993) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    32   0.88   2
(EK135365) 1093012217997 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.88   2
(AC232061) Solanum tuberosum chromosome 5 clone RH081H19, **...    36   0.88   2
(AC235619) Solanum tuberosum strain Diploid genotype RH89-03...    34   0.89   2
(FP016155) Medicago truncatula chromosome 5 clone mte1-16i20...    32   0.90   2
(AP000860) Homo sapiens genomic DNA, chromosome 11q, clone:C...    32   0.90   2
(FP102213) Medicago truncatula chromosome 5 clone mtrs-161b8...    32   0.91   2
(AL953876) Human DNA sequence *** SEQUENCING CANCELLED *** f...    36   0.92   5
(AM460618) Vitis vinifera contig VV78X277577.6, whole genome...    34   0.92   3
(AM443944) Vitis vinifera, whole genome shotgun sequence, co...    34   0.94   2
(AM456097) Vitis vinifera contig VV78X047607.12, whole genom...    34   0.96   2
(EK121984) 1092963637124 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.96   2
(EI389194) POTAM56TR Solanum tuberosum RHPOTKEY BAC ends Sol...    28   0.98   3
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    36   1.0    4
(EA771798) Sequence 82 from patent US 7381808.                     32   1.0    2
(DD080792) Method and nucleic acids for the differentiation ...    32   1.0    2
(AX659111) Sequence 82 from Patent WO02103041.                     32   1.0    2
(AX657837) Sequence 82 from Patent WO02103042.                     32   1.0    2
(CC320352) TAM32-19A16_Sp6.1 TAM32 Gallus gallus genomic clo...    36   1.1    2
(CC567089) CH240_441G1.TARBAC13P2 CHORI-240 Bos taurus genom...    32   1.1    2
(BZ427551) BONOH23TR BO_1.6_2_KB_tot Brassica oleracea genom...    36   1.1    2
(ET794966) CHO_OF658xf24f1.ab1 CHO_OF Nicotiana tabacum geno...    34   1.1    2
(DX403133) GK_Sa0003I16.b1 Gossypioides kirkii WGS library G...    36   1.1    2
(BZ075858) lkg61h04.b1 B.oleracea002 Brassica oleracea genom...    36   1.1    2
(AC129430) Rattus norvegicus clone CH230-204C4, *** SEQUENCI...    36   1.2    4
(CZ935281) 259192 Tomato EcoRI BAC Library Solanum lycopersi...    30   1.2    3
(BD452784) Diagnosis of Diseases Associated with tumor suppr...    30   1.2    4
(AX251263) Sequence 231 from Patent WO0168912.                     30   1.2    4
(CU590631) Theobroma cacao, mRNA sequence (KZ0ACR4YN19FM1).        40   1.2    2
(FB571370) Sequence 237 from Patent EP1865317.                     38   1.2    4
(FB571314) Sequence 181 from Patent EP1865317.                     38   1.2    4
(AY573131) Prochyliza xanthostoma 16S ribosomal RNA gene, pa...    36   1.3    2
(EB824105) 1091753 CC04 Plodia interpunctella cDNA clone 569...    34   1.3    3
(AC136130) Rattus norvegicus clone CH230-67B4, *** SEQUENCIN...    36   1.4    4
(AX345165) Sequence 236 from Patent WO0200928.                     42   1.4    2
(AX458633) Sequence 179 from Patent WO0246454.                     32   1.5    5
(AP009298) Solanum lycopersicum genomic DNA, chromosome 8, c...    36   1.5    6
(BI971788) sag98e02.y1 Gm-c1084 Glycine max cDNA clone GENOM...    32   1.6    3
(BX664747) Zebrafish DNA sequence from clone CH211-149D1 in ...    44   1.6    1
(BV522454) G591P68553RD5.T0 Clint Pan troglodytes verus STS ...    44   1.6    1
(AM478536) Vitis vinifera contig VV78X135118.12, whole genom...    44   1.6    1
(AM458177) Vitis vinifera, whole genome shotgun sequence, co...    44   1.6    1
(AC235230) Glycine max strain Williams 82 clone GM_WBb0026I1...    44   1.6    1
(AC216407) Populus trichocarpa clone POP002-K09, complete se...    44   1.6    1
(AC182694) Populus trichocarpa clone Pop1-45E19, complete se...    44   1.6    1
(CQ588842) Sequence 16600 from Patent WO0171042.                   44   1.6    1
(DQ656408) Oleria fumata isolate ND4OF40_35 NADH dehydrogena...    44   1.6    1
(DQ656407) Oleria fumata isolate ND4OF49_62 NADH dehydrogena...    44   1.6    1
(DQ656406) Oleria fumata isolate ND4OF44_61 NADH dehydrogena...    44   1.6    1
(DQ656405) Oleria fumata isolate ND4OF52_43 NADH dehydrogena...    44   1.6    1
(DQ656404) Oleria fumata isolate ND4OF54_44 NADH dehydrogena...    44   1.6    1
(DQ656403) Oleria fumata isolate ND4OF50_41 NADH dehydrogena...    44   1.6    1
(DQ656402) Oleria fumata isolate ND4OF48_40 NADH dehydrogena...    44   1.6    1
(DQ656401) Oleria fumata isolate ND4OF45_39 NADH dehydrogena...    44   1.6    1
(DQ656400) Oleria fumata isolate ND4OF43_38 NADH dehydrogena...    44   1.6    1
(DQ656399) Oleria fumata isolate ND4OF41_36 NADH dehydrogena...    44   1.6    1
(DQ656398) Oleria fumata isolate ND4OF39_34 NADH dehydrogena...    44   1.6    1
(DQ656397) Oleria fumata isolate ND4OF38_33 NADH dehydrogena...    44   1.6    1
(DQ656396) Oleria fumata isolate ND4OF70_64 NADH dehydrogena...    44   1.6    1
(DQ656395) Oleria fumata isolate ND4OF61_45 NADH dehydrogena...    44   1.6    1
(DQ656394) Oleria fumata isolate ND4OF34_29 NADH dehydrogena...    44   1.6    1
(DQ656393) Oleria fumata isolate ND4OF33_28 NADH dehydrogena...    44   1.6    1
(DQ656392) Oleria fumata isolate ND4OF35_30 NADH dehydrogena...    44   1.6    1
(DQ656391) Oleria fumata isolate ND4OF32_27 NADH dehydrogena...    44   1.6    1
(DQ656390) Oleria fumata isolate ND4OF30_25 NADH dehydrogena...    44   1.6    1
(DQ656389) Oleria fumata isolate ND4OF31_26 NADH dehydrogena...    44   1.6    1
(DQ656388) Oleria fumata isolate ND4OF80_65 NADH dehydrogena...    44   1.6    1
(DQ656387) Oleria fumata isolate ND4OF29_24 NADH dehydrogena...    44   1.6    1
(DQ656386) Oleria fumata isolate ND4OF37_32 NADH dehydrogena...    44   1.6    1
(DQ656385) Oleria fumata isolate ND4OF92_67 NADH dehydrogena...    44   1.6    1
(DQ656384) Oleria fumata isolate ND4OF101_49 NADH dehydrogen...    44   1.6    1
(DQ656383) Oleria fumata isolate ND4OF25_20 NADH dehydrogena...    44   1.6    1
(DQ656382) Oleria fumata isolate ND4OF24_19 NADH dehydrogena...    44   1.6    1
(DQ656381) Oleria fumata isolate ND4OF102_50 NADH dehydrogen...    44   1.6    1
(DQ656380) Oleria fumata isolate ND4OF20_15 NADH dehydrogena...    44   1.6    1
(DQ656379) Oleria fumata isolate ND4OF110_70 NADH dehydrogen...    44   1.6    1
(DQ656378) Oleria fumata isolate ND4OF23_18 NADH dehydrogena...    44   1.6    1
(DQ656377) Oleria fumata isolate ND4OF22_17 NADH dehydrogena...    44   1.6    1
(DQ656376) Oleria fumata isolate ND4OF16_11 NADH dehydrogena...    44   1.6    1
(DQ656375) Oleria fumata isolate ND4OF19_14 NADH dehydrogena...    44   1.6    1
(DQ656374) Oleria fumata isolate ND4OF18_13 NADH dehydrogena...    44   1.6    1
(DQ656373) Oleria fumata isolate ND4OF15_10 NADH dehydrogena...    44   1.6    1
(DQ656372) Oleria fumata isolate ND4OF17_12 NADH dehydrogena...    44   1.6    1
(DQ656371) Oleria fumata isolate ND4OF9_6 NADH dehydrogenase...    44   1.6    1
(DQ656370) Oleria fumata isolate ND4OF7_4 NADH dehydrogenase...    44   1.6    1
(DQ656369) Oleria fumata isolate ND4OF139_79 NADH dehydrogen...    44   1.6    1
(DQ656368) Oleria fumata isolate ND4OF138_78 NADH dehydrogen...    44   1.6    1
(DQ656367) Oleria fumata isolate ND4OF11_8 NADH dehydrogenas...    44   1.6    1
(DQ656366) Oleria fumata isolate ND4OF10_7 NADH dehydrogenas...    44   1.6    1
(DQ656365) Oleria fumata isolate ND4OF8_5 NADH dehydrogenase...    44   1.6    1
(DQ656364) Oleria fumata isolate ND4OF130_73 NADH dehydrogen...    44   1.6    1
(DQ656363) Oleria fumata isolate ND4OF131_74 NADH dehydrogen...    44   1.6    1
(DQ656362) Oleria fumata isolate ND4OF132_75 NADH dehydrogen...    44   1.6    1
(DQ656361) Oleria fumata isolate ND4OF6_60 NADH dehydrogenas...    44   1.6    1
(DQ656360) Oleria fumata isolate ND4OF5_3 NADH dehydrogenase...    44   1.6    1
(DQ656359) Oleria fumata isolate ND4OF3_2 NADH dehydrogenase...    44   1.6    1
(DQ656358) Oleria fumata isolate ND4OF1_1 NADH dehydrogenase...    44   1.6    1
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 44   1.6    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    44   1.6    1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    44   1.6    1
(AC010574) Drosophila melanogaster 3L BAC RP98-7L7 (Roswell ...    44   1.6    1
(AC018659) Homo sapiens 12 BAC RP11-528M18 (Roswell Park Can...    44   1.6    1
(AC163078) Bos taurus clone CH240-122D4, WORKING DRAFT SEQUE...    44   1.6    1
(AC123415) Rattus norvegicus clone CH230-159P3, *** SEQUENCI...    44   1.6    1
(AC115557) Rattus norvegicus clone CH230-112J24, *** SEQUENC...    44   1.6    1
(FP340182) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.6    1
(AC091950) Homo sapiens chromosome 5 clone RP11-404K21, WORK...    44   1.6    1
(CU442709) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.6    1
(AC222524) Macaca mulatta clone CH250-49B4, WORKING DRAFT SE...    44   1.6    1
(AC218865) Gorilla gorilla gorilla clone CH255-461J5, WORKIN...    44   1.6    1
(AC218863) Gorilla gorilla gorilla clone CH255-284C2, WORKIN...    44   1.6    1
(AC218860) Macaca mulatta clone CH250-33J14, WORKING DRAFT S...    44   1.6    1
(AC200880) Zea mays chromosome 10 clone CH201-24I21; ZMMBBc0...    44   1.6    1
(AC173331) Bos taurus clone CH240-88B11, WORKING DRAFT SEQUE...    44   1.6    1
(AC168642) Strongylocentrotus purpuratus clone R3-3018C18, W...    44   1.6    1
(AC014107) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   1.6    1
(BH452974) BOHIK93TF BOHI Brassica oleracea genomic clone BO...    44   1.6    1
(FI682469) BOT01-20N18TF BOT01 Brassica oleracea genomic clo...    44   1.6    1
(FI212785) CccaBa035-E23TR CccABa Cajanus cajan genomic clon...    44   1.6    1
(FI040128) CHO_OF6463xh12r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   1.6    1
(FH532471) CHO_OF4135xg08r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   1.6    1
(ET850427) CHO_OF099xe23f1.ab1 CHO_OF Nicotiana tabacum geno...    44   1.6    1
(ET634351) DG23507-5prime P{wHy} element transposon insertio...    44   1.6    1
(ER480937) 1093015263665 Global-Ocean-Sampling_GS-35-01-01-1...    44   1.6    1
(ER438233) 1092963804298 Global-Ocean-Sampling_GS-35-01-01-1...    44   1.6    1
(ER419854) 1092963696775 Global-Ocean-Sampling_GS-35-01-01-1...    44   1.6    1
(EK361794) 1095469087645 Global-Ocean-Sampling_GS-31-01-01-1...    44   1.6    1
(EK309253) 1095462391321 Global-Ocean-Sampling_GS-31-01-01-1...    44   1.6    1
(ED283019) AUAC-aaz83g12.g1 Ascaris suum whole genome shotgu...    44   1.6    1
(DX540837) GH_MBb0013J22r GH_MBb Gossypium hirsutum genomic ...    44   1.6    1
(DU386609) 1098313121379 CHORI-243 Ovis aries genomic clone ...    44   1.6    1
(AG915087) Drosophila auraria DNA, clone: DAB1-012A15.F.fa, ...    44   1.6    1
(CG199485) PUFVI77TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   1.6    1
(BH945745) obu91a09.b1 B.oleracea002 Brassica oleracea genom...    44   1.6    1
(BH816372) AM__Ba0021H17f Apis mellifera Apis mellifera geno...    44   1.6    1
(EL927694) NY4Tr1_12_E08.b1_A039 NY4 trophonts (NY4Tr1) Icht...    44   1.6    1
(EL927223) NY4Tr1_7_F03.b1_A039 NY4 trophonts (NY4Tr1) Ichth...    44   1.6    1
(EL925300) NY4Th2_154_G06.b1_A039 NY4 theronts Ichthyophthir...    44   1.6    1
(EL923924) NY4Th2_112_G10.b1_A039 NY4 theronts Ichthyophthir...    44   1.6    1
(EL923141) NY4Th2_89_G05.b1_A039 NY4 theronts Ichthyophthiri...    44   1.6    1
(EL921378) NY4Th2_58_F02.b1_A039 NY4 theronts Ichthyophthiri...    44   1.6    1
(EL919297) NY4Th2_29_C08.b2_A039 NY4 theronts Ichthyophthiri...    44   1.6    1
(EL918871) NY4Th2_25_D10.b2_A039 NY4 theronts Ichthyophthiri...    44   1.6    1
(EL916665) NY4Th2_4_C10.b2_A039 NY4 theronts Ichthyophthiriu...    44   1.6    1
(EL916652) NY4Th2_4_B05.b2_A039 NY4 theronts Ichthyophthiriu...    44   1.6    1
(EL916407) NY4Th2_2_E02.b2_A039 NY4 theronts Ichthyophthiriu...    44   1.6    1
(EL916255) NY4Th2_1_C01.b2_A039 NY4 theronts Ichthyophthiriu...    44   1.6    1
(EL908981) INIT2_28_B05.g1_A006 G5 trophont cDNA (INIT2) Ich...    44   1.6    1
(EL908669) INIT2_26_A11.g1_A006 G5 trophont cDNA (INIT2) Ich...    44   1.6    1
(AU073896) Dictyostelium discoideum slug cDNA, clone SSI661.       44   1.6    1
(CN586141) USDA-FP_129213 Acyrthosiphon pisum, Pea Aphid Acy...    44   1.6    1
(BQ135041) INIT1_2_E03.g1_A006 G5 trophont cDNA (INIT1) Icht...    44   1.6    1
(FF321848) 280413171 Pea aphid whole body normalized full le...    44   1.6    1
(FF320408) 280406283 Pea aphid whole body normalized full le...    44   1.6    1
(FF316355) 280383547 Pea aphid whole body normalized full le...    44   1.6    1
(FF298377) 279319336 Pea aphid whole body normalized full le...    44   1.6    1
(FF294826) 279302983 Pea aphid whole body normalized full le...    44   1.6    1
(FC805903) CBGC7466.fwd CBGC Lottia gigantea 15h 18h embryos...    44   1.6    1
(FC805902) CBGC7466.rev CBGC Lottia gigantea 15h 18h embryos...    44   1.6    1
(FC804064) CBGC6204.fwd CBGC Lottia gigantea 15h 18h embryos...    44   1.6    1
(FC802451) CBGC5097.fwd CBGC Lottia gigantea 15h 18h embryos...    44   1.6    1
(FC802450) CBGC5097.rev CBGC Lottia gigantea 15h 18h embryos...    44   1.6    1
(FC780828) CBGC12685.fwd CBGC Lottia gigantea 15h 18h embryo...    44   1.6    1
(FC780827) CBGC12685.rev CBGC Lottia gigantea 15h 18h embryo...    44   1.6    1
(FC779937) CBGC12128.fwd CBGC Lottia gigantea 15h 18h embryo...    44   1.6    1
(FC779936) CBGC12128.rev CBGC Lottia gigantea 15h 18h embryo...    44   1.6    1
(FC778457) CBGC11145.fwd CBGC Lottia gigantea 15h 18h embryo...    44   1.6    1
(FC778456) CBGC11145.rev CBGC Lottia gigantea 15h 18h embryo...    44   1.6    1
(FC777243) CBGC10271.fwd CBGC Lottia gigantea 15h 18h embryo...    44   1.6    1
(FC777242) CBGC10271.rev CBGC Lottia gigantea 15h 18h embryo...    44   1.6    1
(FC765204) CBBN2330.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv...    44   1.6    1
(FC765203) CBBN2330.rev CBBN Lottia gigantea 3,4,5,6.5d Larv...    44   1.6    1
(FC755041) CBBI8445.fwd CBBI Lottia gigantea 26h,37h,61h Lar...    44   1.6    1
(FC755040) CBBI8445.rev CBBI Lottia gigantea 26h,37h,61h Lar...    44   1.6    1
(FC749126) CBBI4336.fwd CBBI Lottia gigantea 26h,37h,61h Lar...    44   1.6    1
(FC749125) CBBI4336.rev CBBI Lottia gigantea 26h,37h,61h Lar...    44   1.6    1
(FC748257) CBBI3800.fwd CBBI Lottia gigantea 26h,37h,61h Lar...    44   1.6    1
(FC743525) CBBI13755.fwd CBBI Lottia gigantea 26h,37h,61h La...    44   1.6    1
(FC743524) CBBI13755.rev CBBI Lottia gigantea 26h,37h,61h La...    44   1.6    1
(FC731316) CBBG6559.fwd CBBG Lottia gigantea 12,15,18h embry...    44   1.6    1
(FC731315) CBBG6559.rev CBBG Lottia gigantea 12,15,18h embry...    44   1.6    1
(FC731232) CBBG6507.fwd CBBG Lottia gigantea 12,15,18h embry...    44   1.6    1
(FC731231) CBBG6507.rev CBBG Lottia gigantea 12,15,18h embry...    44   1.6    1
(FC727786) CBBG4381.fwd CBBG Lottia gigantea 12,15,18h embry...    44   1.6    1
(FC727785) CBBG4381.rev CBBG Lottia gigantea 12,15,18h embry...    44   1.6    1
(FC725288) CBBG2724.fwd CBBG Lottia gigantea 12,15,18h embry...    44   1.6    1
(FC725287) CBBG2724.rev CBBG Lottia gigantea 12,15,18h embry...    44   1.6    1
(FC717218) CBBG11356.fwd CBBG Lottia gigantea 12,15,18h embr...    44   1.6    1
(FC712725) CAXY7607.fwd CAXY Lottia gigantea from male gonad...    44   1.6    1
(FC712724) CAXY7607.rev CAXY Lottia gigantea from male gonad...    44   1.6    1
(FC710168) CAXY6200.fwd CAXY Lottia gigantea from male gonad...    44   1.6    1
(FC710167) CAXY6200.rev CAXY Lottia gigantea from male gonad...    44   1.6    1
(FC702993) CAXY1718.fwd CAXY Lottia gigantea from male gonad...    44   1.6    1
(FC702992) CAXY1718.rev CAXY Lottia gigantea from male gonad...    44   1.6    1
(FC693381) CAXX3799.fwd CAXX Lottia gigantea from male gonad...    44   1.6    1
(FC693380) CAXX3799.rev CAXX Lottia gigantea from male gonad...    44   1.6    1
(FC670196) CAXW741.fwd CAXW Lottia gigantea from female gona...    44   1.6    1
(FC670195) CAXW741.rev CAXW Lottia gigantea from female gona...    44   1.6    1
(FC668510) CAXW6438.fwd CAXW Lottia gigantea from female gon...    44   1.6    1
(FC668509) CAXW6438.rev CAXW Lottia gigantea from female gon...    44   1.6    1
(FC667544) CAXW5514.fwd CAXW Lottia gigantea from female gon...    44   1.6    1
(FC665695) CAXW4507.fwd CAXW Lottia gigantea from female gon...    44   1.6    1
(FC664860) CAXW4056.fwd CAXW Lottia gigantea from female gon...    44   1.6    1
(FC664859) CAXW4056.rev CAXW Lottia gigantea from female gon...    44   1.6    1
(FC661308) CAXW1975.fwd CAXW Lottia gigantea from female gon...    44   1.6    1
(FC658604) CAXW16053.fwd CAXW Lottia gigantea from female go...    44   1.6    1
(FC653600) CAXW13145.fwd CAXW Lottia gigantea from female go...    44   1.6    1
(FC653599) CAXW13145.rev CAXW Lottia gigantea from female go...    44   1.6    1
(FC652760) CAXW12656.fwd CAXW Lottia gigantea from female go...    44   1.6    1
(FC652759) CAXW12656.rev CAXW Lottia gigantea from female go...    44   1.6    1
(FC651340) CAXW11870.fwd CAXW Lottia gigantea from female go...    44   1.6    1
(FC651339) CAXW11870.rev CAXW Lottia gigantea from female go...    44   1.6    1
(FC650913) CAXW11624.rev CAXW Lottia gigantea from female go...    44   1.6    1
(FC634973) CAXT9538.fwd CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC632042) CAXT7971.fwd CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC632041) CAXT7971.rev CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC631360) CAXT7621.fwd CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC631359) CAXT7621.rev CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC631305) CAXT7592.fwd CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC631304) CAXT7592.rev CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC627728) CAXT5695.fwd CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC627727) CAXT5695.rev CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC626240) CAXT4904.fwd CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC626239) CAXT4904.rev CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC623041) CAXT3110.rev CAXT Lottia gigantea from mantle Lot...    44   1.6    1
(FC618569) CAXS9500.fwd CAXS Lottia gigantea from head, foot...    44   1.6    1
(FC618568) CAXS9500.rev CAXS Lottia gigantea from head, foot...    44   1.6    1
(FC618370) CAXS9378.fwd CAXS Lottia gigantea from head, foot...    44   1.6    1
(FC618369) CAXS9378.rev CAXS Lottia gigantea from head, foot...    44   1.6    1
(FC618351) CAXS9367.rev CAXS Lottia gigantea from head, foot...    44   1.6    1
(FC617592) CAXS8935.fwd CAXS Lottia gigantea from head, foot...    44   1.6    1
(FC617591) CAXS8935.rev CAXS Lottia gigantea from head, foot...    44   1.6    1
(FC616776) CAXS8457.fwd CAXS Lottia gigantea from head, foot...    44   1.6    1
(FC608287) CAXS3844.fwd CAXS Lottia gigantea from head, foot...    44   1.6    1
(FC601025) CAXS13247.fwd CAXS Lottia gigantea from head, foo...    44   1.6    1
(FC601024) CAXS13247.rev CAXS Lottia gigantea from head, foo...    44   1.6    1
(FC600319) CAXS12820.fwd CAXS Lottia gigantea from head, foo...    44   1.6    1
(FC600318) CAXS12820.rev CAXS Lottia gigantea from head, foo...    44   1.6    1
(FC597719) CAXS10632.fwd CAXS Lottia gigantea from head, foo...    44   1.6    1
(FC597718) CAXS10632.rev CAXS Lottia gigantea from head, foo...    44   1.6    1
(FC564187) CAWF5366.fwd CAWF Lottia gigantea from mantle (H)...    44   1.6    1
(FC564186) CAWF5366.rev CAWF Lottia gigantea from mantle (H)...    44   1.6    1
(EX640236) 256632979 Pea aphid whole body normalized full le...    44   1.6    1
(EX634954) 256595906 Pea aphid whole body normalized full le...    44   1.6    1
(EX610876) 255372846 Pea aphid whole body normalized full le...    44   1.6    1
(EX603343) 255339611 Pea aphid whole body normalized full le...    44   1.6    1
(EX602791) 255333786 Pea aphid whole body normalized full le...    44   1.6    1
(AC034233) Homo sapiens chromosome 5 clone CTD-2251M10, comp...    40   1.7    3
(AX346357) Sequence 1428 from Patent WO0200928.                    32   1.7    4
(AC078994) Homo sapiens chromosome 2 clone RP11-16B4 contain...    38   1.7    5
(FP326659) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   1.7    4
(AC016599) Homo sapiens chromosome 5 clone CTD-2054D19, comp...    40   1.7    3
(EB828988) 1088818 KZ03 Plodia interpunctella cDNA clone 555...    34   1.8    3
(EB828713) 1087468 KZ03 Plodia interpunctella cDNA clone 553...    34   1.8    3
(EB825248) 1087752 KZ01 Plodia interpunctella cDNA clone 556...    34   1.8    3
(DH292557) Oryzias latipes Fosmid clone:GOLWFno637_p05, reve...    38   1.8    2
(EB824763) 992741 KZ01 Plodia interpunctella cDNA clone 5291...    34   1.8    3
(EB824472) 1150458 CC04 Plodia interpunctella cDNA clone 578...    34   1.8    3
(AC129379) Rattus norvegicus clone CH230-194D2, *** SEQUENCI...    36   1.9    4
(EB825041) 1082837 KZ01 Plodia interpunctella cDNA clone 552...    34   1.9    3
(AC103092) Rattus norvegicus clone CH230-55N2, *** SEQUENCIN...    36   1.9    4
(AL138649) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    36   1.9    3
(AL731550) Human DNA sequence from clone RP11-94H3 on chromo...    36   1.9    4
(EB826408) 1082723 KZ01 Plodia interpunctella cDNA clone 553...    34   1.9    3
(DX822765) GH_MBb0019F14r GH_MBb Gossypium hirsutum genomic ...    28   2.0    4
(CC968156) BOIGH70TF BO_1.4_1.6_KB_nuc Brassica oleracea gen...    32   2.2    2
(BW593071) Ciona savignyi cDNA, clone:csef026h02, 3'end, sin...    38   2.2    2
(CU951487) Brassica napus GSS, clone JBnB032D06, end read, p...    38   2.2    2
(EL926194) NY4ThAmp1_1_A08.b1_A039 NY4 theronts: amplified l...    34   2.2    3
(CU619306) Theobroma cacao, mRNA sequence (KZ0AAA14YE12FM1).       40   2.3    2
(EK219710) 1095460136876 Global-Ocean-Sampling_GS-31-01-01-1...    28   2.3    4
(AX345723) Sequence 794 from Patent WO0200928.                     32   2.3    4
(CR377226) Zebrafish DNA sequence from clone DKEY-120I4 in l...    32   2.3    6
(EL926262) NY4ThAmp1_1_A08.g1_A039 NY4 theronts: amplified l...    34   2.4    3
(EB828985) 1088925 KZ03 Plodia interpunctella cDNA clone 554...    34   2.4    3
(EB823220) 1091666 CC04 Plodia interpunctella cDNA clone 569...    34   2.4    3
(FP017243) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.6    3
(X07073) Euglena gracilis chloroplast genes for psbE, psbF, ...    40   2.6    2
(CP000312) Clostridium perfringens SM101, complete genome.         34   2.6    2
(AC159706) Medicago truncatula chromosome 8 clone mth2-187h4...    34   2.7    6
(BX908798) Parachlamydia-related symbiont UWE25, complete ge...    30   2.7    2
(CZ171381) MIAA-10C06b.b1 Meloidogyne incognita BAC end sequ...    34   2.7    2
(AX346949) Sequence 2020 from Patent WO0200928.                    36   2.7    3
(ED716255) GM_WBb0066A08.f GM_WBb Glycine max genomic clone ...    34   2.7    2
(CZ178102) MIAA-26P18b.b1 Meloidogyne incognita BAC end sequ...    34   2.8    2
(AR777056) Sequence 211 from patent US 6972197.                    32   2.8    2
(AL844502) Plasmodium falciparum 3D7 chromosome 3.                 30   2.8    2
(CU586261) Theobroma cacao, mRNA sequence (KZ0AAB9YG19FM2).        40   2.8    2
(AC153579) Mus musculus 6 BAC RP23-21F2 (Roswell Park Cancer...    36   2.9    2
(BH675864) BOMKT96TF BO_2_3_KB Brassica oleracea genomic clo...    32   2.9    2
(AC176415) Strongylocentrotus purpuratus clone R3-12I22, WOR...    42   2.9    2
(ET926319) CHO_OF226xp07f1.ab1 CHO_OF Nicotiana tabacum geno...    38   2.9    2
(CE006508) tigr-gss-dog-17000320917108 Dog Library Canis lup...    36   3.0    2
(EF383190) Toxoderopsis taurus isolate MN068 12S ribosomal R...    30   3.0    3
(FI694794) BOT01-24H24TF BOT01 Brassica oleracea genomic clo...    34   3.1    2
(AC162602) Bos taurus clone CH240-112C24, WORKING DRAFT SEQU...    30   3.1    2
(AC173406) Bos taurus clone CH240-225F13, *** SEQUENCING IN ...    32   3.1    2
(DY226821) ID0AAI9YH01RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    38   3.1    2
(AC230367) Bos taurus clone CH240-511A10, WORKING DRAFT SEQU...    32   3.1    2
(AC167160) Bos taurus clone CH240-183F18, WORKING DRAFT SEQU...    30   3.1    2
(AC157369) Bos taurus clone CH240-67F10, WORKING DRAFT SEQUE...    32   3.2    2
(CK315944) SB02028B1B05.f1 normalized Keck-Tagu Library SB02...    30   3.2    3
(AL161503) Arabidopsis thaliana DNA chromosome 4, contig fra...    32   3.2    2
(AC221675) Bos taurus clone CH240-388K9, WORKING DRAFT SEQUE...    34   3.2    2
(CU074421) Zebrafish DNA sequence from clone DKEY-172O7 in l...    36   3.2    4
(BX470116) Zebrafish DNA sequence from clone DKEY-244B23 in ...    34   3.2    2
(AC157552) Mus musculus chromosome 7, clone RP23-89C10, comp...    32   3.2    2
(AC073696) Mus musculus clone RP23-160L22, WORKING DRAFT SEQ...    32   3.2    2
(AC168146) Bos taurus clone CH240-196N9, WORKING DRAFT SEQUE...    34   3.2    2
(AC190896) Zea mays chromosome unknown clone CH201-546D6; ZM...    32   3.2    2
(AC098592) Homo sapiens BAC clone RP11-403N12 from 7, comple...    34   3.2    2
(AC168172) Bos taurus clone CH240-198B13, WORKING DRAFT SEQU...    34   3.2    2
(FP326681) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.2    2
(CR933758) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   3.2    2
(AC026887) Homo sapiens chromosome 10 clone RP11-544P1, comp...    32   3.2    2
(AC101889) Mus musculus chromosome 3, clone RP23-465M13, com...    34   3.2    2
(CT954332) Zebrafish DNA sequence from clone DKEY-57G18 in l...    34   3.2    2
(BX005248) Zebrafish DNA sequence from clone CH211-155H12 in...    32   3.2    2
(EK430203) 1095516143070 Global-Ocean-Sampling_GS-31-01-01-1...    38   3.2    2
(AC103870) Homo sapiens chromosome 11, clone RP11-702L21, co...    32   3.2    2
(AC015907) Homo sapiens clone RP11-48A13, WORKING DRAFT SEQU...    32   3.2    2
(AC192409) Pan troglodytes chromosome 3 clone CH251-22K1, WO...    34   3.2    2
(AC222661) Bos taurus clone CH240-442I19, WORKING DRAFT SEQU...    32   3.2    2
(FP236711) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.2    2
(CR388185) Zebrafish DNA sequence from clone CH211-256G21 in...    34   3.2    2
(AC026392) Homo sapiens chromosome 10 clone RP11-238C10, com...    32   3.2    2
(AC072056) Homo sapiens chromosome 7 clone RP11-273F8, WORKI...    34   3.2    2
(AC069213) Homo sapiens 3 BAC RP11-338O10 (Roswell Park Canc...    34   3.2    2
(CU929410) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.2    2
(AC189201) Brassica rapa subsp. pekinensis clone KBrB005N03,...    34   3.2    2
(AC222396) Bos taurus clone CH240-417E17, WORKING DRAFT SEQU...    30   3.2    2
(AC004993) Homo sapiens PAC clone RP5-1194E14 from 7p21, com...    34   3.2    2
(CU182082) Zebrafish DNA sequence from clone DKEY-219M7.           34   3.2    2
(AC235294) Glycine max strain Williams 82 clone GM_WBb0059G0...    34   3.2    2
(AC091633) Homo sapiens 3 BAC RP11-506F8 (Roswell Park Cance...    34   3.2    2
(AC154396) Mus musculus chromosome 3, clone RP24-254D5, comp...    34   3.2    2
(AC127467) Atelerix albiventris clone LB4-4E15, complete seq...    34   3.2    2
(AF147263) Arabidopsis thaliana BAC T1J24.                         32   3.3    2
(DT793498) 126480468 TL1 Tribolium castaneum cDNA clone 17M2...    38   3.3    2
(AC157705) Xenopus (Silurana) tropicalis clone ISB1-237A19, ...    32   3.3    2
(AF295068) Homo sapiens neuroplastoma apoptosis-related RNA-...    32   3.3    2

>(C90305) Dictyostelium discoideum slug cDNA, clone SSI782.
          Length = 174

 Score =  119 bits (60), Expect(2) = 7e-43
 Identities = 60/60 (100%)
 Strand = Plus / Plus


Query: 73  gatatatttacaataaaactatttattttaaatcaaaaaccatttggtatttgatattaa 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  gatatatttacaataaaactatttattttaaatcaaaaaccatttggtatttgatattaa 132

 Score = 85.7 bits (43), Expect(2) = 7e-43
 Identities = 43/43 (100%)
 Strand = Plus / Plus


Query: 10 cctatttattttaacaatcaaataattatttattttttaaaac 52
          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 cctatttattttaacaatcaaataattatttattttttaaaac 52

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 280,169,989
Number of extensions: 25240443
Number of successful extensions: 8612489
Number of sequences better than 10.0: 891
Length of query: 173
Length of database: 104,622,809,269
Length adjustment: 22
Effective length of query: 151
Effective length of database: 102,296,446,593
Effective search space: 15446763435543
Effective search space used: 15446763435543
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05485-1 (Contig-U05485-1Q) /CSM_Contig/Contig-U05485-1Q.Seq.d
         (173 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U87145_10(U87145|pid:none) Toxoplasma gondii chloroplast, comple...    32   6.9

>U87145_10(U87145|pid:none) Toxoplasma gondii chloroplast, complete
           genome.
          Length = 268

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 24  QSNNYLFFXXXXXXXXRYIYNKTIYFKSKTIWYLILIF 137
           Q  N+LF+         +I+ K  +FK+KT WYLI IF
Sbjct: 35  QLYNFLFYLYILKD---FIFYKYFFFKNKTYWYLINIF 69

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 113,380,725
Number of extensions: 1009200
Number of successful extensions: 945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 944
Number of HSP's successfully gapped: 1
Length of query: 57
Length of database: 1,061,185,681
Length adjustment: 30
Effective length of query: 27
Effective length of database: 963,132,241
Effective search space: 26004570507
Effective search space used: 26004570507
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)
PSORT 

 psg: 0.20  gvh: 0.13  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.00
 nuc: 0.81  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for Contig-U05485-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0