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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05483-1
Contig ID Contig-U05483-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05483-1 (Contig-U05483-1Q) /CSM_Contig/Contig-U05483-1Q.Seq.d
ATCTATTGTTTATTTTAAAAAATGTCAGATACAAATTCACATACAATTAC
AGATGAAAGTAAAGTAGGACCACCACCATTCCACAGTGATTCAGATGATG
ATGATGGTTGGGACAACAATAACAATAATAATAACAATAACAATAACAAT
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAATAA
TACTGATGGTAATAATGATGGTAATAATACTAATCCATATCATGGAGGTG
GTAAAGACAAAGATGATTTCAATATGGACAACGCCCAAATTGGATATACC
GACCATGATGTTGATGTCAATTTATTCCTTAAGGATAAATTTGATCCATG
TTTTATTATTAATAATTCAAAATATGTTTCATGGAGAAGTGATGCTTCCC
AAGGCCAACTTCAACTAGGAAACACTTTAATTAGTTACACTTGTTACCCA
GTTGGTGCCCTTCTTGTAAAGGTTTATGGTAATACACCCACCCAAGTGTT
ACAGATTTCGGTGTTCAAAGAACTACTGGGTTATAGTTCCTCTGAAACAA
AAGAAGTTCAAAGAGATTATCGATTTAGTGTTGGTATCACAGGTGCAAGC
TTAGGATTCAAAGTTACCACCAGAAGTATTCTTACAACAAATTTGGAGAG
TAAAAGTGATATTGCATGGACTCAAGATTTACCAGGCCTCCAAAAATACT
ACGTATACCCAAAGTTGTTGGTATTCTGTTTTTGCTCTAAATAGTAATGA
TTCCCTCCTTGCCTCTAAAAACACAAGTTATAAAATTAAATATATTAATG
GTAAAAATTATCTTTTCGTTGGTTTTAACAGAAATGATACTTGTATTTCA
AAAAAAGATTGTGTTGTTAATATTCCAACAGAAAAAGATTTTATTGATTA
TCTTGCTGCAAACCCATCCAAATGGGTTTTGTCTTAAATCTTTAAAGGTT
AATCTGTTTATAAAATTATAAATTAATAATAATTTTAAAACTTCATTAAA
AAATTAATAAAATTTTAAAAATTAATTCTTTTTTTTCTTTATTTATTATC
TTAAAAAAAAAAAA
Gap no gap
Contig length 1064
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2997395
End point 2996331
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 5
Link to clone list U05483
List of clone(s) 

est1=VFC342F,-16,399
est2=SSI757E,12,1053
est3=VSF617Z,467,1034
est4=VSF617F,479,1061
est5=VFC342Z,528,1023
Translated Amino Acid sequence 
iyclf*KMSDTNSHTITDESKVGPPPFHSDSDDDDGWDNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTDGNNDGNNTNPYHGGGKDKDDFNMDNAQIGYTDHDVDVNLFLKDKFDPCFII
NNSKYVSWRSDASQGQLQLGNTLISYTCYPVGALLVKVYGNTPTQVLQISVFKELLGYSS
SETKEVQRDYRFSVGITGASLGFKVTTRSILTTNLESKSDIAWTQDLPGLQKYYVYPKLL
VFCFCSK***fppcl*khkl*n*iy*w*klsfrwf*qk*ylyfkkrlcc*ysnrkrfy*l
scckpiqmgfvlnl*rlicl*nykliiilklh*kinkilkinsffslfiilkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iyclf*KMSDTNSHTITDESKVGPPPFHSDSDDDDGWDNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTDGNNDGNNTNPYHGGGKDKDDFNMDNAQIGYTDHDVDVNLFLKDKFDPCFII
NNSKYVSWRSDASQGQLQLGNTLISYTCYPVGALLVKVYGNTPTQVLQISVFKELLGYSS
SETKEVQRDYRFSVGITGASLGFKVTTRSILTTNLESKSDIAWTQDLPGLQKYYVYPKLL
VFCFCSK***fppcl*khkl*n*iy*w*klsfrwf*qk*ylyfkkrlcc*ysnrkrfy*l
scckpiqmgfvlnl*rlicl*nykliiilklh*kinkilkinsffslfiilkkk


Frame B:
sivyfkkcqiqihiqlqmkvk*dhhhstviqmmmmvgttitiiititititttttttttt
tttttiilmvimmviilihimevvktkmisiwttpkldiptmmlmsiyslrinlihvlll
iiqnmfhgevmlpkanfn*etl*lvtlvtqlvpfl*rfmvihppkcyrfrcsknywvivp
lkqkkfkeiidlvlvsqvqa*dsklppevflqqiwrvkvilhglkiyqasknttytqscw
ysvfalnsndsllaskntsykikyingknylfvgfnrndtciskkdcvvniptekdfidy
laanpskwvls*ifkg*svykiin***f*nfikklikf*klilfflylls*kkk


Frame C:
llfilknvrykftynyr*k*srtttipq*fr***wlgqq*q***q*q*q*qqqqqqqqqq
qqqqq*y*w***w**y*siswrw*rqr*fqygqrpnwiyrp*c*cqfip*g*i*smfyy*
*fkicfmek*cfprptstrkhfn*lhllpswcpsckglw*ythpsvtdfgvqrttgl*fl
*nkrsskrlsi*cwyhrcklriqsyhqkysynkfge*k*ycmdsrftrppkilripkvvg
ilfll*ivmipslplktqviklnilmvkiifslvltemilvfqkkivllifqqkkillii
llqthpngfclkslkvnlfikl*innnfktslkn**nfkn*fffffiyylkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05483-1 (Contig-U05483-1Q)
/CSM_Contig/Contig-U05483-1Q.Seq.d
         (1064 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05483-1 (Contig-U05483-1Q) /CSM_Contig/Conti...  1461  0.0
Contig-U11135-1 (Contig-U11135-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U10899-1 (Contig-U10899-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14130-1 (Contig-U14130-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U12036-1 (Contig-U12036-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U12605-1 (Contig-U12605-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12453-1 (Contig-U12453-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12038-1 (Contig-U12038-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U08866-1 (Contig-U08866-1Q) /CSM_Contig/Conti...    36  0.075

>Contig-U05483-1 (Contig-U05483-1Q) /CSM_Contig/Contig-U05483-1Q.Seq.d
          Length = 1064

 Score = 1461 bits (737), Expect = 0.0
 Identities = 751/758 (99%)
 Strand = Plus / Plus

                                                                       
Query: 198 taatactgatggtaataatgatggtaataatactaatccatatcatggaggtggtaaaga 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 taatactgatggtaataatgatggtaataatactaatccatatcatggaggtggtaaaga 257

                                                                       
Query: 258 caaagatgatttcaatatggacaacgcccaaattggatataccgaccatgatgttgatgt 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 caaagatgatttcaatatggacaacgcccaaattggatataccgaccatgatgttgatgt 317

                                                                       
Query: 318 caatttattccttaaggataaatttgatccatgttttattattaataattcaaaatatgt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caatttattccttaaggataaatttgatccatgttttattattaataattcaaaatatgt 377

                                                                       
Query: 378 ttcatggagaagtgatgcttcccaaggccaacttcaactaggaaacactttaattagtta 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttcatggagaagtgatgcttcccaaggccaacttcaactaggaaacactttaattagtta 437

                                                                       
Query: 438 cacttgttacccagttggtgcccttcttgtaaaggtttatggtaatacacccacccaagt 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cacttgttacccagttggtgcccttcttgtaaaggtttatggtaatacacccacccaagt 497

                                                                       
Query: 498 gttacagatttcggtgttcaaagaactactgggttatagttcctctgaaacaaaagaagt 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gttacagatttcggtgttcaaagaactactgggttatagttcctctgaaacaaaagaagt 557

                                                                       
Query: 558 tcaaagagattatcgatttagtgttggtatcacaggtgcaagcttaggattcaaagttac 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcaaagagattatcgatttagtgttggtatcacaggtgcaagcttaggattcaaagttac 617

                                                                       
Query: 618 caccagaagtattcttacaacaaatttggagagtaaaagtgatattgcatggactcaaga 677
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caccagaagtattcttacaacaaatttggagagtaaaagtgatattgcatggactcaaga 677

                                                                       
Query: 678 tttaccaggcctccaaaaatactacgtatacccaaagttgttggtattctgtttttgctc 737
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttaccaggcctccaaaaatactacgtatacccaaagttgttggtattctgtttttgctc 737

                                                                       
Query: 738 taaatagtaatgattccctccttgcctctaaaaacacaagttataaaattaaatatatta 797
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 taaatagtaatgattccctccttgcctctaaaaacacaagttataaaattaaatatatta 797

                                                                       
Query: 798 atggtaaaaattatcttttcgttggttttaacagaaatgatacttgtatttcnnnnnnng 857
           ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 798 atggtaaaaattatcttttcgttggttttaacagaaatgatacttgtatttcaaaaaaag 857

                                                                       
Query: 858 attgtgttgttaatattccaacagaaaaagattttattgattatcttgctgcaaacccat 917
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 attgtgttgttaatattccaacagaaaaagattttattgattatcttgctgcaaacccat 917

                                                 
Query: 918 ccaaatgggttttgtcttaaatctttaaaggttaatct 955
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ccaaatgggttttgtcttaaatctttaaaggttaatct 955


 Score =  222 bits (112), Expect = 6e-58
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctattgtttattttaaaaaatgtcagatacaaattcacatacaattacagatgaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atctattgtttattttaaaaaatgtcagatacaaattcacatacaattacagatgaaagt 60

                                                               
Query: 61  aaagtaggaccaccaccattccacagtgattcagatgatgatgatggttggg 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaagtaggaccaccaccattccacagtgattcagatgatgatgatggttggg 112


>Contig-U11135-1 (Contig-U11135-1Q) /CSM_Contig/Contig-U11135-1Q.Seq.d
          Length = 1959

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 773  acaagttataaaattaaata 792
            ||||||||||||||||||||
Sbjct: 1540 acaagttataaaattaaata 1559


>Contig-U10899-1 (Contig-U10899-1Q) /CSM_Contig/Contig-U10899-1Q.Seq.d
          Length = 1468

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  tgattcagatgatgatgatg 106
           ||||||||||||||||||||
Sbjct: 558 tgattcagatgatgatgatg 577


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,047
Number of Sequences: 6905
Number of extensions: 17047
Number of successful extensions: 2838
Number of sequences better than 10.0: 297
length of query: 1064
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1048
effective length of database: 5,564,391
effective search space: 5831481768
effective search space used: 5831481768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.28
Homology vs DNA 
Query= Contig-U05483-1 (Contig-U05483-1Q) /CSM_Contig/Contig-U05483-1Q.Seq.d
         (1064 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...   577   0.0    7
(AU265507) Dictyostelium discoideum vegetative cDNA clone:VS...   460   0.0    3
(AU265506) Dictyostelium discoideum vegetative cDNA clone:VS...   359   0.0    4
(BJ429897) Dictyostelium discoideum cDNA clone:ddv5d11, 3' e...   353   0.0    3
(BJ411660) Dictyostelium discoideum cDNA clone:ddv5d11, 5' e...   391   e-163  2
(C90293) Dictyostelium discoideum slug cDNA, clone SSI757.        280   e-151  3
(AU073924) Dictyostelium discoideum slug cDNA, clone SSI757.      200   1e-71  2
(AL844503) Plasmodium falciparum 3D7 chromosome 4.                 40   0.027  2
(AC235119) Glycine max strain Williams 82 clone GM_WBa0029B2...    36   0.040  10
(AC204738) Pan troglodytes BAC clone CH251-325B3 from chromo...    52   0.046  1
(AF114820) Homo sapiens smoothened (SMO) gene, exon 2.             52   0.046  1
(AC083866) Homo sapiens chromosome 7 clone RP11-702D16, comp...    52   0.046  1
(AC011005) Homo sapiens chromosome 7 clone RP11-286H14, comp...    52   0.046  1
(AC114888) Pan troglodytes clone RP43-159M22, WORKING DRAFT ...    52   0.046  1
(AC079047) Homo sapiens clone CTD-2225P22, WORKING DRAFT SEQ...    52   0.046  1
(AC078901) Homo sapiens chromosome 13 clone RP11-474E23 map ...    52   0.046  1
(AC073549) Homo sapiens chromosome UNK clone RP11-396H10, WO...    52   0.046  1
(EI704118) IGBR02B10TR BAC library from the recurrent gliobl...    52   0.046  1
(BM040662) 603614104F1 NIH_MGC_108 Homo sapiens cDNA clone I...    52   0.046  1
(AC150687) Bos taurus BAC CH240-243M2 (Children's Hospital O...    42   0.085  5
(AC235354) Glycine max strain Williams 82 clone GM_WBb0094M1...    36   0.11   9
(AC171336) Mus musculus  BAC RP24-286O17 (Roswell Park Cance...    50   0.18   1
(AC155834) Mus musculus 10 BAC RP24-93K4 (Roswell Park Cance...    50   0.18   1
(M63270) P.falciparum malaria antigen (M26-32-2) gene, parti...    50   0.18   1
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                50   0.18   1
(AC116869) Mus musculus chromosome 10 clone RP24-414K13 map ...    50   0.18   1
(CR256925) Forward strand read from insert in 5'HPRT inserti...    50   0.18   1
(CR226771) Forward strand read from insert in 5'HPRT inserti...    50   0.18   1
(CD076578) MA3-0001U-M340-E03-U.G MA3-0001 Schistosoma manso...    50   0.18   1
(EX708764) GF_AW200151f04.esd.z AW2 Schistosoma mansoni cDNA...    50   0.18   1
(EX708694) GF_AW200131f04.esd.y AW2 Schistosoma mansoni cDNA...    50   0.18   1
(FH708225) CHO_OF5202xi19f1.ab1 CHO_OF5 Nicotiana tabacum ge...    38   0.30   2
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...    40   0.32   7
(AC181441) Strongylocentrotus purpuratus clone R3-1111O13, W...    36   0.41   2
(AC201573) Strongylocentrotus purpuratus clone R3-4008D6, WO...    36   0.41   2
(AC235107) Glycine max strain Williams 82 clone GM_WBa0013B0...    36   0.41   8
(AC187356) Medicago truncatula chromosome 2 BAC clone mth2-8...    48   0.46   3
(AC235142) Glycine max strain Williams 82 clone GM_WBa0073N0...    36   0.54   8
(AC160184) Bos taurus clone CH240-87A21, WORKING DRAFT SEQUE...    48   0.72   1
(AC223091) Bos taurus clone CH240-429J13, WORKING DRAFT SEQU...    48   0.72   1
(AC171860) Bos taurus clone CH240-310F24, WORKING DRAFT SEQU...    48   0.72   1
(CR326828) mte1-55O3FM1 BAC end, cultivar Jemalong A17 of Me...    48   0.72   1
(EH303602) UAHYP_14D_F_F07 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH303584) UAHYP_14D_R_F07 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH302866) UAHYP_13C_R_E06 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH300700) UAHYP_10B_R_E01 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH299347) UAHYP_08B_F_D11 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH299342) UAHYP_08B_R_D11 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH297014) UAHYP_04B_F_D12 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH297011) UAHYP_04B_R_D12 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH296120) UAHYP_02D_R_D04 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH295656) UAHYP_02A_F_D04 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EH295649) UAHYP_02A_R_D04 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(EB636631) AGENCOURT_57303007 D. grimshawi EST Drosophila gr...    48   0.72   1
(EB631668) AGENCOURT_56959992 D. grimshawi EST Drosophila gr...    48   0.72   1
(EB627248) AGENCOURT_57291994 D. grimshawi EST Drosophila gr...    48   0.72   1
(EB600588) AGENCOURT_56929977 D. grimshawi EST Drosophila gr...    48   0.72   1
(EB599506) AGENCOURT_54721478 D. grimshawi EST Drosophila gr...    48   0.72   1
(GR206777) CBPI7857.g1 CBPI Mimulus lewisii floral buds (L) ...    48   0.72   1
(FE667416) UAHYP_27A_R_G09 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE666426) UAHYP_25B_R_B08 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE665915) UAHYP_24B_R_G02 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE665855) UAHYP_24B_F_G02 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE665792) UAHYP_24A_R_E12 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE665458) UAHYP_23B_R_H12 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE664425) UAHYP_21C_R_E07 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE664349) UAHYP_21C_F_E07 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE664148) UAHYP_21A_R_H03 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE664080) UAHYP_21A_F_H03 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE663970) UAHYP_20D_R_C04 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE663900) UAHYP_20D_F_C04 UaHyphae_ARS Uromyces appendicula...    48   0.72   1
(FE662113) UAHAUST_06A_R_E01 UaHaust_ARS Uromyces appendicul...    48   0.72   1
(FE661910) UAHAUST_05C_R_E01 UaHaust_ARS Uromyces appendicul...    48   0.72   1
(FE661816) UAHAUST_05B_R_G01 UaHaust_ARS Uromyces appendicul...    48   0.72   1
(FE661446) UAHAUST_04B_R_A09 UaHaust_ARS Uromyces appendicul...    48   0.72   1
(FE661387) UAHAUST_04A_R_F04 UaHaust_ARS Uromyces appendicul...    48   0.72   1
(FE660823) UAHAUST_02B_R_G07 UaHaust_ARS Uromyces appendicul...    48   0.72   1
(FE660690) UAHAUST_02A_R_C02 UaHaust_ARS Uromyces appendicul...    48   0.72   1
(FE660637) UAHAUST_02A_F_C02 UaHaust_ARS Uromyces appendicul...    48   0.72   1
(EY305077) CAWX19134.fwd CAWX Helobdella robusta Primary Ear...    48   0.72   1
(AF410153) Swinepox virus isolate 17077-99, complete genome.       40   0.88   4
(GC701795) Sequence 17040 from patent US 6812339.                  44   1.2    3
(AC179913) Strongylocentrotus purpuratus clone R3-1003E15, W...    42   1.2    2
(AF482758) Cowpox virus strain Brighton Red, complete genome.      32   1.5    2
(FG264368) cDN38P0002N23 Seabream cDN38 Library Sparus aurat...    40   1.5    2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   1.9    11
(CU463082) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.0    3
(AC235230) Glycine max strain Williams 82 clone GM_WBb0026I1...    42   2.0    4
(AC168340) Strongylocentrotus purpuratus clone R3-58F3, WORK...    46   2.0    3
(ER799420) PPTA506TF Solanum tuberosum RHPOTKEY BAC ends Sol...    36   2.1    2
(FM144715) Sparus aurata EST, 5'-end sequence, clone cDN16P0...    40   2.2    2
(AC184237) Strongylocentrotus purpuratus clone R3-3061A4, WO...    40   2.2    6
(FD450003) EGGA275TF Haematobia irritans eggs Haematobia irr...    34   2.3    3
(FD450004) EGGA275TR Haematobia irritans eggs Haematobia irr...    34   2.5    3
(BX537116) Zebrafish DNA sequence from clone DKEY-235I4 in l...    36   2.6    6
(AC235396) Glycine max strain Williams 82 clone GM_WBb0118K1...    38   2.7    8
(CU633396) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.8    4
(DQ374024) Beta vulgaris chromosome 9 clone BAC62 genomic se...    46   2.8    1
(AC143758) Macaca mulatta clone CH250-268M13, WORKING DRAFT ...    46   2.8    1
(FP340173) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.8    1
(FP236130) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.8    1
(CT009752) Trypanosoma brucei chromosome 10, unassembled con...    46   2.8    1
(AC194709) Zea mays chromosome 1 clone ZMMBBb-17F13; ZMMBBb0...    46   2.8    1
(AC184484) Strongylocentrotus purpuratus clone R3-1110I13, W...    46   2.8    1
(AC181315) Strongylocentrotus purpuratus clone R3-4017M11, W...    46   2.8    1
(CL322373) RPCI44_404F4.f RPCI-44 Sus scrofa genomic clone R...    46   2.8    1
(CG833054) ZMMBBc0128A17r ZMMBBc (EcoRI) Zea mays subsp. may...    46   2.8    1
(CE115108) tigr-gss-dog-17000325019631 Dog Library Canis lup...    46   2.8    1
(BZ722982) PUDAY25TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   2.8    1
(DY225136) ID0AAI4YO07RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    46   2.8    1
(DW010419) w10k10_M13F Myzus persicae, tobacco lineage, whol...    46   2.8    1
(DC957895) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC957638) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC954160) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC948881) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC948211) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC943908) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC923446) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC923348) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC917340) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC915420) Physcomitrella patens subsp. patens cDNA, clone:p...    46   2.8    1
(DC229503) Plasmodium berghei strain ANKA cDNA clone:SG01568...    46   2.8    1
(CV847467) ID0AEE2DF11RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    46   2.8    1
(CV847185) ID0AEE2AF04RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    46   2.8    1
(CV846925) ID0AEE1BF10RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    46   2.8    1
(CV845160) ID0AEE11CA01RM1 ID0AEE Acyrthosiphon pisum cDNA c...    46   2.8    1
(CV838295) ID0ACC7CC12RM1 ID0ACC Acyrthosiphon pisum cDNA cl...    46   2.8    1
(CV835150) ID0ACC27CF05RM1 ID0ACC Acyrthosiphon pisum cDNA c...    46   2.8    1
(CN749825) ApAL3SD-XVIII-B9 ApAL3SD Acyrthosiphon pisum cDNA...    46   2.8    1
(BP175164) Cryptomeria japonica mRNA, clone: CC2522R, 3'end,...    46   2.8    1
(BM169005) EST571528 PyBS Plasmodium yoelii yoelii cDNA clon...    46   2.8    1
(BJ953052) Physcomitrella patens subsp. patens cDNA clone:pp...    46   2.8    1
(BJ605427) Physcomitrella patens subsp. patens cDNA clone:pp...    46   2.8    1
(BJ579645) Physcomitrella patens subsp. patens cDNA clone:pp...    46   2.8    1
(BJ168000) Physcomitrella patens subsp. patens cDNA clone:pp...    46   2.8    1
(BJ167981) Physcomitrella patens subsp. patens cDNA clone:pp...    46   2.8    1
(Z98120) Physcomitrella patens mRNA; expressed sequence tag;...    46   2.8    1
(FF320633) 280408330 Pea aphid whole body normalized full le...    46   2.8    1
(FF316020) 279418982 Pea aphid whole body normalized full le...    46   2.8    1
(FC455398) CBAX9336.fwd CBAX Physcomitrella patens subsp. pa...    46   2.8    1
(FC455397) CBAX9336.rev CBAX Physcomitrella patens subsp. pa...    46   2.8    1
(FC452579) CBAX7315.rev CBAX Physcomitrella patens subsp. pa...    46   2.8    1
(FC449010) CBAX5403.rev CBAX Physcomitrella patens subsp. pa...    46   2.8    1
(FC436472) CBAX11301.rev CBAX Physcomitrella patens subsp. p...    46   2.8    1
(FC431992) CBAW2000.fwd CBAW Physcomitrella patens subsp. pa...    46   2.8    1
(FC431991) CBAW2000.rev CBAW Physcomitrella patens subsp. pa...    46   2.8    1
(FC402417) CAYZ25108.fwd CAYZ Physcomitrella patens subsp. p...    46   2.8    1
(FC402416) CAYZ25108.rev CAYZ Physcomitrella patens subsp. p...    46   2.8    1
(FC349194) CAYY25623.rev CAYY Physcomitrella patens subsp. p...    46   2.8    1
(EX629632) 255458762 Pea aphid whole body normalized full le...    46   2.8    1
(EX629175) 255457295 Pea aphid whole body normalized full le...    46   2.8    1
(EX627845) 255446304 Pea aphid whole body normalized full le...    46   2.8    1
(CP000969) Thermotoga sp. RQ2, complete genome.                    46   2.8    1
(BX950229) Methanococcus maripaludis strain S2, complete seq...    46   2.8    1
(AC164395) Medicago truncatula clone mth2-69h11, complete se...    40   2.9    4
(CR626924) Zebrafish DNA sequence from clone DKEY-65K19 in l...    38   3.0    4
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   3.5    7
(FC840397) CBHN10812.rev CBHN Metridium senile tentacle Metr...    34   3.7    3
(AC021180) Homo sapiens BAC clone RP11-727M10 from 4, comple...    44   3.8    6
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    40   3.8    8
(FC840398) CBHN10812.fwd CBHN Metridium senile tentacle Metr...    34   3.9    3
(AC224554) Bos taurus clone CH240-482I23, WORKING DRAFT SEQU...    44   4.3    4
(CT573247) Zebrafish DNA sequence from clone DKEY-179O14 in ...    40   4.4    4
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 32   4.6    2
(AC181553) Strongylocentrotus purpuratus clone R3-7G5, WORKI...    44   4.9    5
(CU861497) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.2    5
(AC108225) Rattus norvegicus clone CH230-7E21, *** SEQUENCIN...    32   5.2    2
(EY308837) CAWX21252.rev CAWX Helobdella robusta Primary Ear...    32   5.3    3
(BX537259) Zebrafish DNA sequence from clone CH211-241P10 in...    32   5.3    2
(AC236558) Zonotrichia albicollis clone CH264-32J17, WORKING...    34   5.4    2
(AC184383) Strongylocentrotus purpuratus clone R3-3100K13, W...    34   5.4    2
(AC236553) Zonotrichia albicollis clone CH264-164G23, WORKIN...    34   5.4    2
(AC180873) Strongylocentrotus purpuratus clone R3-3067L20, W...    34   5.4    2
(CU633449) M.truncatula DNA sequence from clone MTH2-80I14 o...    34   5.5    2
(BX538353) Cryptosporidium parvum chromosome 6, complete seq...    34   5.8    9
(AC018894) Homo sapiens chromosome 14 clone RP11-565J15, WOR...    40   5.9    5
(AC156206) Bos taurus clone CH240-39N6, WORKING DRAFT SEQUEN...    40   6.0    6
(AC146553) Medicago truncatula clone mth2-9e24, complete seq...    40   7.1    5
(EJ323300) 1095403437713 Global-Ocean-Sampling_GS-27-01-01-1...    34   7.2    2
(FI594996) CH264-468E16.S6Wu CHORI-264 Zonotrichia albicolli...    34   7.2    2
(FI594443) CH264-132C13.C7 CHORI-264 Zonotrichia albicollis ...    34   7.2    2
(EI474197) PV_GBa0084A11.f PV_GBa Phaseolus vulgaris genomic...    34   7.3    2
(BJ332348) Dictyostelium discoideum cDNA clone:dda38f20, 5' ...    42   7.4    2
(AC234959) Medicago truncatula clone mth2-193p21, WORKING DR...    36   7.4    3
(G99934) S208P6005FC6.T0 129S1/SvImJ Mus musculus STS genomi...    38   7.4    2
(FP236664) Brassica rapa subsp. pekinensis clone KBrH086A21,...    40   7.5    5
(EY486734) CBBP15367.rev CBBP Hirudo medicinalis hermaphrodi...    42   7.7    2
(AM438117) Vitis vinifera contig VV78X162837.6, whole genome...    38   7.9    2
(BX005232) Zebrafish DNA sequence from clone CH211-172G24 in...    34   8.1    4
(AF104919) Arabidopsis thaliana BAC T15B16.                        36   8.7    7
(EA704052) Sequence 82931 from patent US 7365185.                  42   8.9    2
(AM475217) Vitis vinifera contig VV78X156255.2, whole genome...    40   9.0    3
(BW938672) Branchiostoma floridae cDNA, neurula clone:bfne09...    38   9.4    2
(ER982231) MUGQ_CH252P306G11T7_CP494_042 CHORI-252 Vervet Mo...    40   9.5    2
(DU112218) KBrH114M04F Brassica rapa BAC library KBrH Brassi...    36   9.9    2
(AC179712) Strongylocentrotus purpuratus clone R3-1021G18, W...    38   9.9    7

>(AC116330) Dictyostelium discoideum chromosome 2 map 3191214-3323468
              strain AX4, complete sequence.
          Length = 132254

 Score =  577 bits (291), Expect(7) = 0.0
 Identities = 291/291 (100%)
 Strand = Plus / Plus


Query: 198    taatactgatggtaataatgatggtaataatactaatccatatcatggaggtggtaaaga 257
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124755 taatactgatggtaataatgatggtaataatactaatccatatcatggaggtggtaaaga 124814


Query: 258    caaagatgatttcaatatggacaacgcccaaattggatataccgaccatgatgttgatgt 317
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124815 caaagatgatttcaatatggacaacgcccaaattggatataccgaccatgatgttgatgt 124874


Query: 318    caatttattccttaaggataaatttgatccatgttttattattaataattcaaaatatgt 377
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124875 caatttattccttaaggataaatttgatccatgttttattattaataattcaaaatatgt 124934


Query: 378    ttcatggagaagtgatgcttcccaaggccaacttcaactaggaaacactttaattagtta 437
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124935 ttcatggagaagtgatgcttcccaaggccaacttcaactaggaaacactttaattagtta 124994


Query: 438    cacttgttacccagttggtgcccttcttgtaaaggtttatggtaatacacc 488
              |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124995 cacttgttacccagttggtgcccttcttgtaaaggtttatggtaatacacc 125045

 Score =  577 bits (291), Expect(7) = 0.0
 Identities = 291/291 (100%)
 Strand = Plus / Minus


Query: 198    taatactgatggtaataatgatggtaataatactaatccatatcatggaggtggtaaaga 257
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130677 taatactgatggtaataatgatggtaataatactaatccatatcatggaggtggtaaaga 130618


Query: 258    caaagatgatttcaatatggacaacgcccaaattggatataccgaccatgatgttgatgt 317
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130617 caaagatgatttcaatatggacaacgcccaaattggatataccgaccatgatgttgatgt 130558


Query: 318    caatttattccttaaggataaatttgatccatgttttattattaataattcaaaatatgt 377
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130557 caatttattccttaaggataaatttgatccatgttttattattaataattcaaaatatgt 130498


Query: 378    ttcatggagaagtgatgcttcccaaggccaacttcaactaggaaacactttaattagtta 437
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130497 ttcatggagaagtgatgcttcccaaggccaacttcaactaggaaacactttaattagtta 130438


Query: 438    cacttgttacccagttggtgcccttcttgtaaaggtttatggtaatacacc 488
              |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130437 cacttgttacccagttggtgcccttcttgtaaaggtttatggtaatacacc 130387

 Score =  248 bits (125), Expect(7) = 0.0
 Identities = 137/141 (97%)
 Strand = Plus / Plus


Query: 709    ccaaagttgttggtattctgtttttgctctaaatagtaatgattccctccttgcctctaa 768
              ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 125349 ccaaagttgtttgtattatgtttttgctctaaataataatgattccctccttgcatctaa 125408


Query: 769    aaacacaagttataaaattaaatatattaatggtaaaaattatcttttcgttggttttaa 828
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125409 aaacacaagttataaaattaaatatattaatggtaaaaattatcttttcgttggttttaa 125468


Query: 829    cagaaatgatacttgtatttc 849
              |||||||||||||||||||||
Sbjct: 125469 cagaaatgatacttgtatttc 125489

 Score =  248 bits (125), Expect(7) = 0.0
 Identities = 137/141 (97%)
 Strand = Plus / Minus


Query: 709    ccaaagttgttggtattctgtttttgctctaaatagtaatgattccctccttgcctctaa 768
              ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 130083 ccaaagttgtttgtattatgtttttgctctaaataataatgattccctccttgcatctaa 130024


Query: 769    aaacacaagttataaaattaaatatattaatggtaaaaattatcttttcgttggttttaa 828
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130023 aaacacaagttataaaattaaatatattaatggtaaaaattatcttttcgttggttttaa 129964


Query: 829    cagaaatgatacttgtatttc 849
              |||||||||||||||||||||
Sbjct: 129963 cagaaatgatacttgtatttc 129943

 Score =  222 bits (112), Expect(7) = 0.0
 Identities = 112/112 (100%)
 Strand = Plus / Plus


Query: 1      atctattgtttattttaaaaaatgtcagatacaaattcacatacaattacagatgaaagt 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124558 atctattgtttattttaaaaaatgtcagatacaaattcacatacaattacagatgaaagt 124617


Query: 61     aaagtaggaccaccaccattccacagtgattcagatgatgatgatggttggg 112
              ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124618 aaagtaggaccaccaccattccacagtgattcagatgatgatgatggttggg 124669

 Score =  222 bits (112), Expect(7) = 0.0
 Identities = 112/112 (100%)
 Strand = Plus / Minus


Query: 1      atctattgtttattttaaaaaatgtcagatacaaattcacatacaattacagatgaaagt 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130874 atctattgtttattttaaaaaatgtcagatacaaattcacatacaattacagatgaaagt 130815


Query: 61     aaagtaggaccaccaccattccacagtgattcagatgatgatgatggttggg 112
              ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130814 aaagtaggaccaccaccattccacagtgattcagatgatgatgatggttggg 130763

 Score =  208 bits (105), Expect(7) = 0.0
 Identities = 105/105 (100%)
 Strand = Plus / Plus


Query: 605    gattcaaagttaccaccagaagtattcttacaacaaatttggagagtaaaagtgatattg 664
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125246 gattcaaagttaccaccagaagtattcttacaacaaatttggagagtaaaagtgatattg 125305


Query: 665    catggactcaagatttaccaggcctccaaaaatactacgtatacc 709
              |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125306 catggactcaagatttaccaggcctccaaaaatactacgtatacc 125350

 Score =  208 bits (105), Expect(7) = 0.0
 Identities = 105/105 (100%)
 Strand = Plus / Minus


Query: 605    gattcaaagttaccaccagaagtattcttacaacaaatttggagagtaaaagtgatattg 664
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130186 gattcaaagttaccaccagaagtattcttacaacaaatttggagagtaaaagtgatattg 130127


Query: 665    catggactcaagatttaccaggcctccaaaaatactacgtatacc 709
              |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130126 catggactcaagatttaccaggcctccaaaaatactacgtatacc 130082

 Score =  153 bits (77), Expect(7) = 0.0
 Identities = 77/77 (100%)
 Strand = Plus / Plus


Query: 529    ggttatagttcctctgaaacaaaagaagttcaaagagattatcgatttagtgttggtatc 588
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125083 ggttatagttcctctgaaacaaaagaagttcaaagagattatcgatttagtgttggtatc 125142


Query: 589    acaggtgcaagcttagg 605
              |||||||||||||||||
Sbjct: 125143 acaggtgcaagcttagg 125159

 Score =  153 bits (77), Expect(7) = 0.0
 Identities = 77/77 (100%)
 Strand = Plus / Plus


Query: 857    gattgtgttgttaatattccaacagaaaaagattttattgattatcttgctgcaaaccca 916
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125497 gattgtgttgttaatattccaacagaaaaagattttattgattatcttgctgcaaaccca 125556


Query: 917    tccaaatgggttttgtc 933
              |||||||||||||||||
Sbjct: 125557 tccaaatgggttttgtc 125573

 Score =  153 bits (77), Expect(7) = 0.0
 Identities = 77/77 (100%)
 Strand = Plus / Minus


Query: 857    gattgtgttgttaatattccaacagaaaaagattttattgattatcttgctgcaaaccca 916
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129935 gattgtgttgttaatattccaacagaaaaagattttattgattatcttgctgcaaaccca 129876


Query: 917    tccaaatgggttttgtc 933
              |||||||||||||||||
Sbjct: 129875 tccaaatgggttttgtc 129859

 Score =  153 bits (77), Expect(7) = 0.0
 Identities = 77/77 (100%)
 Strand = Plus / Minus


Query: 529    ggttatagttcctctgaaacaaaagaagttcaaagagattatcgatttagtgttggtatc 588
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130349 ggttatagttcctctgaaacaaaagaagttcaaagagattatcgatttagtgttggtatc 130290


Query: 589    acaggtgcaagcttagg 605
              |||||||||||||||||
Sbjct: 130289 acaggtgcaagcttagg 130273

 Score = 75.8 bits (38), Expect(7) = 0.0
 Identities = 38/38 (100%)
 Strand = Plus / Plus


Query: 492    ccaagtgttacagatttcggtgttcaaagaactactgg 529
              ||||||||||||||||||||||||||||||||||||||
Sbjct: 125047 ccaagtgttacagatttcggtgttcaaagaactactgg 125084

 Score = 75.8 bits (38), Expect(7) = 0.0
 Identities = 38/38 (100%)
 Strand = Plus / Minus


Query: 492    ccaagtgttacagatttcggtgttcaaagaactactgg 529
              ||||||||||||||||||||||||||||||||||||||
Sbjct: 130385 ccaagtgttacagatttcggtgttcaaagaactactgg 130348

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,161,725,301
Number of extensions: 75546032
Number of successful extensions: 7442823
Number of sequences better than 10.0: 196
Length of query: 1064
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 1040
Effective length of database: 102,084,959,077
Effective search space: 106168357440080
Effective search space used: 106168357440080
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05483-1 (Contig-U05483-1Q) /CSM_Contig/Contig-U05483-1Q.Seq.d
         (1064 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso...   340   e-130
AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso...    36   0.003
CP000500_441(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    36   2.6
CU928176_134(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    34   7.7
CP000411_1234(CP000411|pid:none) Oenococcus oeni PSU-1, complete...    34   7.7
AE001437_3188(AE001437|pid:none) Clostridium acetobutylicum ATCC...    34   10.0

>AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromosome
           2 map 3191214-3323468 strain AX4, complete sequence.
           &AC116330_45(AC116330|pid:none)
          Length = 303

 Score =  340 bits (871), Expect(2) = e-130
 Identities = 173/237 (72%), Positives = 175/237 (73%)
 Frame = +1

Query: 22  MSDTNSHTITDESKVGPPPFHXXXXXXXGWDXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 201
           MSDTNSHTITDESKVGPPPFH       GWD
Sbjct: 1   MSDTNSHTITDESKVGPPPFHSDSDDDDGWDNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 60

Query: 202 XXXXXXXXXXXPYHGGGKDKDDFNMDNAQIGYTDHDVDVNLFLKDKFDPCFIINNSKYVS 381
                      PYHGGGKDKDDFNMDNAQIGYTDHDVDVNLFLKDKFDPCFIINNSKYVS
Sbjct: 61  TDGNNDGNNTNPYHGGGKDKDDFNMDNAQIGYTDHDVDVNLFLKDKFDPCFIINNSKYVS 120

Query: 382 WRSDASQGQLQLGNTLISYTCYPVGALLVKVYGNTPTQVLQISVFKELLGYSSSETKEVQ 561
           WRSDASQGQLQLGNTLISYTCYPVGALLVKVYGNTP  V    V +   GYSSSETKEVQ
Sbjct: 121 WRSDASQGQLQLGNTLISYTCYPVGALLVKVYGNTPPSVTDFGV-QRTTGYSSSETKEVQ 179

Query: 562 RDYRFSVGITGASLGFKVTTRSILTTNLESKSDIAWTQDLPGLQKYYVYPKLLVFCF 732
           RDYRFSVGITGASLGFKVTTRSILTTNLESKSDIAWTQDLPGLQKYYVY   L + F
Sbjct: 180 RDYRFSVGITGASLGFKVTTRSILTTNLESKSDIAWTQDLPGLQKYYVYQSCLYYVF 236

 Score =  151 bits (382), Expect(2) = e-130
 Identities = 72/75 (96%), Positives = 73/75 (97%)
 Frame = +2

Query: 710 QSCWYSVFALNSNDSLLASKNTSYKIKYINGKNYLFVGFNRNDTCISKKDCVVNIPTEKD 889
           QSC Y VFALN+NDSLLASKNTSYKIKYINGKNYLFVGFNRNDTCISKKDCVVNIPTEKD
Sbjct: 229 QSCLYYVFALNNNDSLLASKNTSYKIKYINGKNYLFVGFNRNDTCISKKDCVVNIPTEKD 288

Query: 890 FIDYLAANPSKWVLS 934
           FIDYLAANPSKWVLS
Sbjct: 289 FIDYLAANPSKWVLS 303

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,532,987,922
Number of extensions: 28194371
Number of successful extensions: 64798
Number of sequences better than 10.0: 6
Number of HSP's gapped: 64779
Number of HSP's successfully gapped: 9
Length of query: 354
Length of database: 1,061,185,681
Length adjustment: 130
Effective length of query: 224
Effective length of database: 636,287,441
Effective search space: 142528386784
Effective search space used: 142528386784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.65  gvh: 0.08  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for Contig-U05483-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0