Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U05479-1 (Contig-U05479-1Q) /CSM_Contig/Contig-U05479-1Q.Seq.d (456 letters)
Database: ddbj_B 105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C90544) Dictyostelium discoideum slug cDNA, clone SSI704. 234 1e-75 3 (EY389813) CAXA8049.rev CAXA Helobdella robusta Subtracted L... 44 0.002 2 (EY378032) CAXA17043.rev CAXA Helobdella robusta Subtracted ... 42 0.008 2 (EY369466) CAXA12377.rev CAXA Helobdella robusta Subtracted ... 42 0.008 2 (EY389176) CAXA7706.fwd CAXA Helobdella robusta Subtracted L... 42 0.009 2 (EY389814) CAXA8049.fwd CAXA Helobdella robusta Subtracted L... 34 0.060 2 (EY345673) CAWZ14195.fwd CAWZ Helobdella robusta Primary Lat... 34 0.060 2 (EY383998) CAXA4904.fwd CAXA Helobdella robusta Subtracted L... 34 0.060 2 (EY367644) CAXA11366.fwd CAXA Helobdella robusta Subtracted ... 34 0.060 2 (EY378349) CAXA1721.rev CAXA Helobdella robusta Subtracted L... 34 0.060 2 (EY384358) CAXA5105.fwd CAXA Helobdella robusta Subtracted L... 34 0.060 2 (EY373368) CAXA14519.rev CAXA Helobdella robusta Subtracted ... 34 0.060 2 (AY189898) Candida albicans chitin synthase 8 (CHS8) gene, c... 50 0.076 1 (EA265189) Sequence 203 from patent US 7241613. 50 0.076 1 (AR548060) Sequence 3191 from patent US 6747137. 50 0.076 1 (AC180045) Strongylocentrotus purpuratus clone R3-25D13, WOR... 34 0.17 2 (AC178677) Strongylocentrotus purpuratus clone R3-3007E13, W... 34 0.18 2 (AC181464) Strongylocentrotus purpuratus clone R3-51D5, WORK... 34 0.18 2 (GE578065) CCPU2147.b1_E10.ab1 CCP(UWX) Globe Artichoke Cyna... 34 0.22 2 (AZ151688) SP_0036_B1_H06_SP6E Strongylocentrotus purpuratus... 34 0.23 2 (AC134226) Rattus norvegicus clone CH230-9L15, *** SEQUENCIN... 48 0.30 1 (AC094949) Rattus norvegicus clone CH230-6H11, WORKING DRAFT... 48 0.30 1 (AC181599) Strongylocentrotus purpuratus clone R3-1108N19, W... 48 0.30 1 (AC179081) Strongylocentrotus purpuratus clone R3-1108B03, W... 48 0.30 1 (DB627786) Halocynthia roretzi cDNA clone:man17b07, 5' end. 48 0.30 1 (CV458452) aof02-6ms3-b10 Aof02 Asparagus officinalis cDNA c... 48 0.30 1 (AI976588) EST271182 Schistosoma mansoni female, Phil LoVerd... 48 0.30 1 (CD200768) MS1-0123U-A359-B01-U.G MS1-0123 Schistosoma manso... 48 0.30 1 (BG140282) EST480724 wild tomato pollen Solanum pennellii cD... 48 0.30 1 (BG139661) EST480019 wild tomato pollen Solanum pennellii cD... 48 0.30 1 (BG138860) EST479302 wild tomato pollen Solanum pennellii cD... 48 0.30 1 (BG137665) EST478107 wild tomato pollen Solanum pennellii cD... 48 0.30 1 (BG137051) EST477493 wild tomato pollen Solanum pennellii cD... 48 0.30 1 (BG136504) EST477042 wild tomato pollen Solanum pennellii cD... 48 0.30 1 (GH261914) EST_eluc_evq_996189 elucevq mixed_tissue Esox luc... 48 0.30 1 (GH261913) EST_eluc_evq_996957 elucevq mixed_tissue Esox luc... 48 0.30 1 (GH259367) EST_eluc_evq_1019442 elucevq mixed_tissue Esox lu... 48 0.30 1 (GH259366) EST_eluc_evq_1003698 elucevq mixed_tissue Esox lu... 48 0.30 1 (GH254520) EST_eluc_evq_1013034 elucevq mixed_tissue Esox lu... 48 0.30 1 (GH254519) EST_eluc_evq_1013418 elucevq mixed_tissue Esox lu... 48 0.30 1 (GH250656) EST_eluc_evq_1002171 elucevq mixed_tissue Esox lu... 48 0.30 1 (GH243539) EST_eluc_evq_995318 elucevq mixed_tissue Esox luc... 48 0.30 1 (GH243538) EST_eluc_evq_1021430 elucevq mixed_tissue Esox lu... 48 0.30 1 (GH241779) EST_eluc_evq_1009757 elucevq mixed_tissue Esox lu... 48 0.30 1 (EY361066) CAWZ7519.rev CAWZ Helobdella robusta Primary Late... 48 0.30 1 (EY357694) CAWZ5389.rev CAWZ Helobdella robusta Primary Late... 48 0.30 1 (AC173632) Strongylocentrotus purpuratus clone R3-3104P17, W... 42 0.43 2 (FM992694) Candida dubliniensis CD36 chromosome 7, complete ... 36 0.58 2 (AC201649) Strongylocentrotus purpuratus clone R3-4018A2, WO... 36 0.63 3 (AC098281) Rattus norvegicus clone CH230-1J7, WORKING DRAFT ... 32 0.63 2 (AC135834) Rattus norvegicus strain Brown Norway clone CH230... 32 0.63 2 (FD541477) RR2EX52TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2 (EV538199) RR2B337TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2 (EV567248) RR4AK27TF RR4(PB) Raphanus raphanistrum subsp. la... 32 0.84 2 (EY914232) RR3DG08TF RR3(NY) Raphanus raphanistrum subsp. ra... 32 0.84 2 (EY915522) RR3DV21TF RR3(NY) Raphanus raphanistrum subsp. ra... 32 0.84 2 (FD979082) RR3G815TF RR3(NY) Raphanus raphanistrum subsp. ra... 32 0.84 2 (FD971290) RR2GD01TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2 (FD968317) RR2GP73JQ RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2 (FD968883) RR2GY04JQ RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2 (FD973875) RR2H671TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2 (FD972422) RR2GP73TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2 (EV572226) RR4AK27JQ RR4(PB) Raphanus raphanistrum subsp. la... 32 0.85 2 (EV542266) RR2B337JQ RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.85 2 (EY907452) RR2DW05TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.85 2 (FD973137) RR2GY04TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.85 2 (FD960175) RR1GM06JQ RR1(CS) Raphanus raphanistrum subsp. ma... 32 0.85 2 (EY905325) RR2D712TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.86 2 (FD788273) 07VANA7_T7_003_G10_17FEB2006_068 07VANA7 Phaseolu... 32 0.86 2 (EY903386) RR2DW05JQ RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.87 2 (AG988678) Hemicentrotus pulcherrimus BAC clone: BUB1-12C03_... 32 0.87 2 (AC181652) Strongylocentrotus purpuratus clone R3-10K16, WOR... 42 1.2 2 (AC184501) Strongylocentrotus purpuratus clone R3-16H10, WOR... 46 1.2 1 (AC181171) Strongylocentrotus purpuratus clone R3-15H9, WORK... 46 1.2 1 (AC180850) Strongylocentrotus purpuratus clone R3-3067P21, W... 46 1.2 1 (AC167377) Bos taurus clone CH240-192C22, WORKING DRAFT SEQU... 46 1.2 1 (EC607253) Y15E08 YLX600 Hevea brasiliensis cDNA clone Y15E0... 46 1.2 1 (EC604655) Y64H02 YLX600 Hevea brasiliensis cDNA clone Y64H0... 46 1.2 1 (CJ720689) Triticum aestivum cDNA clone whvd9a13 5', Y.Ogiha... 46 1.2 1 (BI875629) fl73b07.y1 Sugano Kawakami zebrafish DRA Danio re... 46 1.2 1 (AE014134) Drosophila melanogaster chromosome 2L, complete s... 32 1.7 2 (AC011063) Drosophila melanogaster, chromosome 2L, region 25... 32 2.4 2 (AC177286) Strongylocentrotus purpuratus clone R3-44I15, WOR... 34 2.4 2 (AC177291) Strongylocentrotus purpuratus clone R3-44M14, WOR... 34 2.4 2 (AC015158) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 32 2.4 2 (AC010572) Drosophila melanogaster clone RPCI98-11N15, *** S... 32 2.4 2 (AC173624) Strongylocentrotus purpuratus clone R3-30L15, ***... 34 2.6 2 (CQ586445) Sequence 14203 from Patent WO0171042. 32 2.7 2 (CS133215) Sequence 37 from Patent WO2005061736. 32 2.7 2 (BT022140) Drosophila melanogaster IP01538 full insert cDNA. 32 2.9 2 (X98766) D.melanogaster mRNA for H15 protein. 32 3.0 2 (CQ586446) Sequence 14204 from Patent WO0171042. 32 3.0 2 (DN791993) 90198601 Sea Urchin primary mesenchyme cell cDNA ... 34 3.1 2 (EY387521) CAXA6806.fwd CAXA Helobdella robusta Subtracted L... 34 3.1 2 (CV745721) SJAL_060_07.T7 SJL Schistosoma japonicum cDNA, mR... 34 3.1 2 (BJ338020) Dictyostelium discoideum cDNA clone:dda59e23, 5' ... 32 3.1 2 (AC168348) Strongylocentrotus purpuratus clone R3-56O12, WOR... 42 4.1 2 (EE658670) CHES3504.b1_O11.ab1 CHE(LMS) serpentine sunflower... 36 4.7 2 (AY702468) Oxyuranus scutellatus scutellatus clone R50 endoc... 44 4.7 1 (AY094427) Arabidopsis thaliana AT5g22640/MDJ22_6 mRNA, comp... 44 4.7 1 (AC189318) Brassica rapa subsp. pekinensis clone KBrB036G18,... 44 4.7 1 (AC155883) Medicago truncatula chromosome 2 clone mte1-80o18... 44 4.7 1 (AB006699) Arabidopsis thaliana genomic DNA, chromosome 5, P... 44 4.7 1 (AC097410) Rattus norvegicus clone CH230-142D10, WORKING DRA... 44 4.7 1 (FJ789650) Brassica rapa subsp. pekinensis, pooled multiple ... 44 4.7 1 (CU695294) Brassica rapa subsp. pekinensis clone KBrH028G06,... 44 4.7 1 (AC201674) Strongylocentrotus purpuratus clone R3-1040H2, WO... 44 4.7 1 (AC201369) Strongylocentrotus purpuratus clone R3-17D12, WOR... 44 4.7 1 (AC181438) Strongylocentrotus purpuratus clone R3-50K16, WOR... 44 4.7 1 (AC181072) Strongylocentrotus purpuratus clone R3-3029F12, W... 44 4.7 1 (AC180745) Strongylocentrotus purpuratus clone R3-3083B24, W... 44 4.7 1 (AC180317) Strongylocentrotus purpuratus clone R3-3119D24, W... 44 4.7 1 (AC179351) Strongylocentrotus purpuratus clone R3-59C12, WOR... 44 4.7 1 (AC178292) Strongylocentrotus purpuratus clone R3-3095E21, W... 44 4.7 1 (AC177610) Strongylocentrotus purpuratus clone R3-1023J22, W... 44 4.7 1 (AC177064) Strongylocentrotus purpuratus clone R3-4004H24, W... 44 4.7 1 (AC175967) Strongylocentrotus purpuratus clone R3-3035E6, WO... 44 4.7 1 (AC175861) Strongylocentrotus purpuratus clone R3-15H21, WOR... 44 4.7 1 (AC175857) Strongylocentrotus purpuratus clone R3-15H22, WOR... 44 4.7 1 (AC165978) Bos taurus clone CH240-173C17, WORKING DRAFT SEQU... 44 4.7 1 (AK223784) Oryza punctata cDNA, clone: BBS02H01, expressed i... 44 4.7 1 (BH378376) AG-ND-172H16.TR ND-TAM Anopheles gambiae genomic ... 44 4.7 1 (AZ199563) SP_1039_B2_E02_SP6E Strongylocentrotus purpuratus... 44 4.7 1 (FI184233) MUGQ_CH252P032H03Sp6_GL434_010 CHORI-252 Vervet M... 44 4.7 1 (ET017081) MUGQ_CH252P322I01T7_CP602_007 CHORI-252 Vervet Mo... 44 4.7 1 (AL769015) Arabidopsis thaliana T-DNA flanking sequence GK-0... 44 4.7 1 (ED512237) KBrB095M04R KBrB, Brassica rapa BamHI BAC library... 44 4.7 1 (DX082457) KBrB095M04F KBrB, Brassica rapa BamHI BAC library... 44 4.7 1 (DX025589) KBrB020K02R KBrB, Brassica rapa BamHI BAC library... 44 4.7 1 (AL088038) Arabidopsis thaliana genome survey sequence SP6 e... 44 4.7 1 (CC000177) pPGSseq-9D12 pPGS Arachis hypogaea subsp. hypogae... 44 4.7 1 (DY396011) PES1036 Petunia embryosac SMART cDNA library Petu... 44 4.7 1 (DT260373) JGI_CAAU10880.fwd CAAU Pimephales promelas brain ... 44 4.7 1 (DT256612) JGI_CAAU7676.fwd CAAU Pimephales promelas brain 7... 44 4.7 1 (DT241491) JGI_CAAT11998.fwd CAAT Pimephales promelas brain ... 44 4.7 1 (DT204308) JGI_CAAS12395.fwd CAAS Pimephales promelas brain ... 44 4.7 1 (DT147266) JGI_ANNO27748.fwd ANNO Pimephales promelas Whole ... 44 4.7 1 (BG337653) 602435213F1 NIH_MGC_46 Homo sapiens cDNA clone IM... 44 4.7 1 (GO645764) EST_afim_evh_1055030 afimevh mixed_tissue Anoplop... 44 4.7 1 (GO619246) EST_afim_evh_744610 afimevh mixed_tissue Anoplopo... 44 4.7 1 (GO618865) EST_afim_evh_744394 afimevh mixed_tissue Anoplopo... 44 4.7 1 (FN009685) Petunia axillaris subsp. axillaris EST, clone dr0... 44 4.7 1 (FN008851) Petunia axillaris subsp. axillaris EST, clone dr0... 44 4.7 1 (FN006958) Petunia axillaris subsp. axillaris EST, clone dr0... 44 4.7 1 (FN003116) Petunia axillaris subsp. axillaris EST, clone dr0... 44 4.7 1 (FD814854) CBGZ18062.rev CBGZ Volvox carteri f. nagariensis ... 44 4.7 1 (FD807953) CBGZ13429.rev CBGZ Volvox carteri f. nagariensis ... 44 4.7 1 (FD708800) CAAA15051.fwd CAAA Petromyzon marinus Petromyzon ... 44 4.7 1 (EY392378) CAXA978.rev CAXA Helobdella robusta Subtracted La... 44 4.7 1 (EY389175) CAXA7706.rev CAXA Helobdella robusta Subtracted L... 44 4.7 1 (EY385489) CAXA5717.rev CAXA Helobdella robusta Subtracted L... 44 4.7 1 (EY384357) CAXA5105.rev CAXA Helobdella robusta Subtracted L... 44 4.7 1 (EY383997) CAXA4904.rev CAXA Helobdella robusta Subtracted L... 44 4.7 1 (EY373232) CAXA14450.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1 (EY373168) CAXA14414.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1 (EY372690) CAXA14144.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1 (EY371465) CAXA13460.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1 (EY367643) CAXA11366.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1 (EY336625) CAWY7809.fwd CAWY Helobdella robusta Subtracted E... 44 4.7 1 (EY310158) CAWX21992.fwd CAWX Helobdella robusta Primary Ear... 44 4.7 1 (EY293044) CAWX10903.rev CAWX Helobdella robusta Primary Ear... 44 4.7 1 (BJ421626) Dictyostelium discoideum cDNA clone:ddv43f08, 5' ... 38 5.1 2 (DY892395) CeleSEQ10611 Cunninghamella elegans pBluescript (... 40 7.2 2 (AC126318) Rattus norvegicus clone CH230-16D11, *** SEQUENCI... 32 8.3 2 (AC197820) Macaca mulatta BAC CH250-426H12 (Children's Hosp... 30 8.5 2
>(C90544) Dictyostelium discoideum slug cDNA, clone SSI704. Length = 457
Score = 234 bits (118), Expect(3) = 1e-75 Identities = 118/118 (100%) Strand = Plus / Plus
Query: 1 agctaatcaattacaatcgtcatcatcatcaccatcgccttctttacagtcacaatcaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agctaatcaattacaatcgtcatcatcatcaccatcgccttctttacagtcacaatcaca 60
Query: 61 atcaccctctttacaatcatcttcaaaatcaactccaaatctatcctcttctttatta 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 atcaccctctttacaatcatcttcaaaatcaactccaaatctatcctcttctttatta 118
Score = 77.8 bits (39), Expect(3) = 1e-75 Identities = 39/39 (100%) Strand = Plus / Plus
Query: 237 taatttatgaagattatgaccaagaatatagtatatagt 275 ||||||||||||||||||||||||||||||||||||||| Sbjct: 237 taatttatgaagattatgaccaagaatatagtatatagt 275
Score = 30.2 bits (15), Expect(3) = 1e-75 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 434 tctctattgtaatat 448 ||||||||||||||| Sbjct: 434 tctctattgtaatat 448
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 105743758 Number of Hits to DB: 204,462,918 Number of extensions: 14124541 Number of successful extensions: 1790885 Number of sequences better than 10.0: 166 Length of query: 456 Length of database: 104,622,809,269 Length adjustment: 23 Effective length of query: 433 Effective length of database: 102,190,702,835 Effective search space: 44248574327555 Effective search space used: 44248574327555 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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