Contig-U05479-1
Contig ID Contig-U05479-1
Contig update 2002. 9.13
Contig sequence
>Contig-U05479-1 (Contig-U05479-1Q) /CSM_Contig/Contig-U05479-1Q.Seq.d
AGCTAATCAATTACAATCGTCATCATCATCACCATCGCCTTCTTTACAGT
CACAATCACAATCACCCTCTTTACAATCATCTTCAAAATCAACTCCAAAT
CTATCCTCTTCTTTATTAGAAAATCCTGTAAAAGAAGAATTAGAATATAA
AAACCAAACTGAAAATGAAGTTGAAATTAAAAAAGAAAACGAAAGTGGGG
AAATTCAATCATTAAGAGATCAATTAAAAGAAATTATAATTTATGAAGAT
TATGACCAAGAATATAGTATATAGTAAAAAAAAAAAAAAAAAAAAAAAAA
ATTAAGAGAATTAAACTTTTTGTAAATGATTAATTTCAAAACAAAAAAGA
ATTTTTTCCATCACTTTCCAAAAATACCAAAAATTATTGTGTACTTTAAC
ACAGTAAATGACAAATAAATAAAAAATTATATTTCTCTATTGTAATATAA
AAAAAA

Gap no gap
Contig length 456
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2503303
End point 2503759
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05479
List of clone(s)

est1=SSI704E,1,457
Translated Amino Acid sequence
ANQLQSSSSSPSPSLQSQSQSPSLQSSSKSTPNLSSSLLENPVKEELEYKNQTENEVEIK
KENESGEIQSLRDQLKEIIIYEDYDQEYSI**kkkkkkkklrelnfl*minfktkknffh
hfpkipkiivyfntvndk*iknyisll*ykk


Translated Amino Acid sequence (All Frames)
Frame A:
s*sitiviiitiafftvtititlftiifkinsksilffirksckrriri*kpn*k*s*n*
krkrkwgnsiikrsikrnynl*rl*pri*yivkkkkkkkkikriklfvnd*fqnkkeffp
slskntknycvl*hsk*qinkklyfsivi*kk


Frame B:
ANQLQSSSSSPSPSLQSQSQSPSLQSSSKSTPNLSSSLLENPVKEELEYKNQTENEVEIK
KENESGEIQSLRDQLKEIIIYEDYDQEYSI**kkkkkkkklrelnfl*minfktkknffh
hfpkipkiivyfntvndk*iknyisll*ykk


Frame C:
linynrhhhhhrllyshnhnhplynhlqnqlqiyplly*kil*kkn*niktklkmklklk
kktkvgkfnh*ein*kkl*fmkimtknivyskkkkkkkkn*en*tfck*liskqkrifsi
tfqkyqkllctltq*mtnk*kiiflycnikk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05479-1 (Contig-U05479-1Q)
/CSM_Contig/Contig-U05479-1Q.Seq.d
(456 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05479-1 (Contig-U05479-1Q) /CSM_Contig/Conti... 291 3e-79
Contig-U00799-1 (Contig-U00799-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U09721-1 (Contig-U09721-1Q) /CSM_Contig/Conti... 42 5e-04
Contig-U08858-1 (Contig-U08858-1Q) /CSM_Contig/Conti... 42 5e-04
Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U12037-1 (Contig-U12037-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U09490-1 (Contig-U09490-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U05448-1 (Contig-U05448-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U03751-1 (Contig-U03751-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U14684-1 (Contig-U14684-1Q) /CSM_Contig/Conti... 36 0.032

>Contig-U05479-1 (Contig-U05479-1Q) /CSM_Contig/Contig-U05479-1Q.Seq.d
Length = 456

Score = 291 bits (147), Expect = 3e-79
Identities = 147/147 (100%)
Strand = Plus / Plus


Query: 302 ttaagagaattaaactttttgtaaatgattaatttcaaaacaaaaaagaattttttccat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttaagagaattaaactttttgtaaatgattaatttcaaaacaaaaaagaattttttccat 361


Query: 362 cactttccaaaaataccaaaaattattgtgtactttaacacagtaaatgacaaataaata 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cactttccaaaaataccaaaaattattgtgtactttaacacagtaaatgacaaataaata 421


Query: 422 aaaaattatatttctctattgtaatat 448
|||||||||||||||||||||||||||
Sbjct: 422 aaaaattatatttctctattgtaatat 448


Score = 254 bits (128), Expect = 7e-68
Identities = 128/128 (100%)
Strand = Plus / Plus


Query: 1 agctaatcaattacaatcgtcatcatcatcaccatcgccttctttacagtcacaatcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctaatcaattacaatcgtcatcatcatcaccatcgccttctttacagtcacaatcaca 60


Query: 61 atcaccctctttacaatcatcttcaaaatcaactccaaatctatcctcttctttattaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaccctctttacaatcatcttcaaaatcaactccaaatctatcctcttctttattaga 120


Query: 121 aaatcctg 128
||||||||
Sbjct: 121 aaatcctg 128


Score = 170 bits (86), Expect = 8e-43
Identities = 86/86 (100%)
Strand = Plus / Plus


Query: 190 cgaaagtggggaaattcaatcattaagagatcaattaaaagaaattataatttatgaaga 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cgaaagtggggaaattcaatcattaagagatcaattaaaagaaattataatttatgaaga 249


Query: 250 ttatgaccaagaatatagtatatagt 275
||||||||||||||||||||||||||
Sbjct: 250 ttatgaccaagaatatagtatatagt 275


>Contig-U00799-1 (Contig-U00799-1Q) /CSM_Contig/Contig-U00799-1Q.Seq.d
Length = 1180

Score = 44.1 bits (22), Expect = 1e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 413 aaataaataaaaaattatattt 434
||||||||||||||||||||||
Sbjct: 1148 aaataaataaaaaattatattt 1169


Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 413 aaataaataaaaaat 427
|||||||||||||||
Sbjct: 1137 aaataaataaaaaat 1151


Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 413 aaataaataaaaaa 426
||||||||||||||
Sbjct: 1124 aaataaataaaaaa 1137


>Contig-U09721-1 (Contig-U09721-1Q) /CSM_Contig/Contig-U09721-1Q.Seq.d
Length = 1230

Score = 42.1 bits (21), Expect = 5e-04
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 16 atcgtcatcatcatcaccatc 36
|||||||||||||||||||||
Sbjct: 522 atcgtcatcatcatcaccatc 502


Score = 28.2 bits (14), Expect = 7.7
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 21 catcatcatcaccatcgc 38
||||||||||| ||||||
Sbjct: 745 catcatcatcatcatcgc 728


Score = 28.2 bits (14), Expect = 7.7
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 21 catcatcatcacca 34
||||||||||||||
Sbjct: 505 catcatcatcacca 492


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,528
Number of Sequences: 6905
Number of extensions: 15528
Number of successful extensions: 2759
Number of sequences better than 10.0: 924
length of query: 456
length of database: 5,674,871
effective HSP length: 16
effective length of query: 440
effective length of database: 5,564,391
effective search space: 2448332040
effective search space used: 2448332040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.22
Homology vs DNA
Query= Contig-U05479-1 (Contig-U05479-1Q) /CSM_Contig/Contig-U05479-1Q.Seq.d
(456 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C90544) Dictyostelium discoideum slug cDNA, clone SSI704. 234 1e-75 3
(EY389813) CAXA8049.rev CAXA Helobdella robusta Subtracted L... 44 0.002 2
(EY378032) CAXA17043.rev CAXA Helobdella robusta Subtracted ... 42 0.008 2
(EY369466) CAXA12377.rev CAXA Helobdella robusta Subtracted ... 42 0.008 2
(EY389176) CAXA7706.fwd CAXA Helobdella robusta Subtracted L... 42 0.009 2
(EY389814) CAXA8049.fwd CAXA Helobdella robusta Subtracted L... 34 0.060 2
(EY345673) CAWZ14195.fwd CAWZ Helobdella robusta Primary Lat... 34 0.060 2
(EY383998) CAXA4904.fwd CAXA Helobdella robusta Subtracted L... 34 0.060 2
(EY367644) CAXA11366.fwd CAXA Helobdella robusta Subtracted ... 34 0.060 2
(EY378349) CAXA1721.rev CAXA Helobdella robusta Subtracted L... 34 0.060 2
(EY384358) CAXA5105.fwd CAXA Helobdella robusta Subtracted L... 34 0.060 2
(EY373368) CAXA14519.rev CAXA Helobdella robusta Subtracted ... 34 0.060 2
(AY189898) Candida albicans chitin synthase 8 (CHS8) gene, c... 50 0.076 1
(EA265189) Sequence 203 from patent US 7241613. 50 0.076 1
(AR548060) Sequence 3191 from patent US 6747137. 50 0.076 1
(AC180045) Strongylocentrotus purpuratus clone R3-25D13, WOR... 34 0.17 2
(AC178677) Strongylocentrotus purpuratus clone R3-3007E13, W... 34 0.18 2
(AC181464) Strongylocentrotus purpuratus clone R3-51D5, WORK... 34 0.18 2
(GE578065) CCPU2147.b1_E10.ab1 CCP(UWX) Globe Artichoke Cyna... 34 0.22 2
(AZ151688) SP_0036_B1_H06_SP6E Strongylocentrotus purpuratus... 34 0.23 2
(AC134226) Rattus norvegicus clone CH230-9L15, *** SEQUENCIN... 48 0.30 1
(AC094949) Rattus norvegicus clone CH230-6H11, WORKING DRAFT... 48 0.30 1
(AC181599) Strongylocentrotus purpuratus clone R3-1108N19, W... 48 0.30 1
(AC179081) Strongylocentrotus purpuratus clone R3-1108B03, W... 48 0.30 1
(DB627786) Halocynthia roretzi cDNA clone:man17b07, 5' end. 48 0.30 1
(CV458452) aof02-6ms3-b10 Aof02 Asparagus officinalis cDNA c... 48 0.30 1
(AI976588) EST271182 Schistosoma mansoni female, Phil LoVerd... 48 0.30 1
(CD200768) MS1-0123U-A359-B01-U.G MS1-0123 Schistosoma manso... 48 0.30 1
(BG140282) EST480724 wild tomato pollen Solanum pennellii cD... 48 0.30 1
(BG139661) EST480019 wild tomato pollen Solanum pennellii cD... 48 0.30 1
(BG138860) EST479302 wild tomato pollen Solanum pennellii cD... 48 0.30 1
(BG137665) EST478107 wild tomato pollen Solanum pennellii cD... 48 0.30 1
(BG137051) EST477493 wild tomato pollen Solanum pennellii cD... 48 0.30 1
(BG136504) EST477042 wild tomato pollen Solanum pennellii cD... 48 0.30 1
(GH261914) EST_eluc_evq_996189 elucevq mixed_tissue Esox luc... 48 0.30 1
(GH261913) EST_eluc_evq_996957 elucevq mixed_tissue Esox luc... 48 0.30 1
(GH259367) EST_eluc_evq_1019442 elucevq mixed_tissue Esox lu... 48 0.30 1
(GH259366) EST_eluc_evq_1003698 elucevq mixed_tissue Esox lu... 48 0.30 1
(GH254520) EST_eluc_evq_1013034 elucevq mixed_tissue Esox lu... 48 0.30 1
(GH254519) EST_eluc_evq_1013418 elucevq mixed_tissue Esox lu... 48 0.30 1
(GH250656) EST_eluc_evq_1002171 elucevq mixed_tissue Esox lu... 48 0.30 1
(GH243539) EST_eluc_evq_995318 elucevq mixed_tissue Esox luc... 48 0.30 1
(GH243538) EST_eluc_evq_1021430 elucevq mixed_tissue Esox lu... 48 0.30 1
(GH241779) EST_eluc_evq_1009757 elucevq mixed_tissue Esox lu... 48 0.30 1
(EY361066) CAWZ7519.rev CAWZ Helobdella robusta Primary Late... 48 0.30 1
(EY357694) CAWZ5389.rev CAWZ Helobdella robusta Primary Late... 48 0.30 1
(AC173632) Strongylocentrotus purpuratus clone R3-3104P17, W... 42 0.43 2
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ... 36 0.58 2
(AC201649) Strongylocentrotus purpuratus clone R3-4018A2, WO... 36 0.63 3
(AC098281) Rattus norvegicus clone CH230-1J7, WORKING DRAFT ... 32 0.63 2
(AC135834) Rattus norvegicus strain Brown Norway clone CH230... 32 0.63 2
(FD541477) RR2EX52TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2
(EV538199) RR2B337TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2
(EV567248) RR4AK27TF RR4(PB) Raphanus raphanistrum subsp. la... 32 0.84 2
(EY914232) RR3DG08TF RR3(NY) Raphanus raphanistrum subsp. ra... 32 0.84 2
(EY915522) RR3DV21TF RR3(NY) Raphanus raphanistrum subsp. ra... 32 0.84 2
(FD979082) RR3G815TF RR3(NY) Raphanus raphanistrum subsp. ra... 32 0.84 2
(FD971290) RR2GD01TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2
(FD968317) RR2GP73JQ RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2
(FD968883) RR2GY04JQ RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2
(FD973875) RR2H671TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2
(FD972422) RR2GP73TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.84 2
(EV572226) RR4AK27JQ RR4(PB) Raphanus raphanistrum subsp. la... 32 0.85 2
(EV542266) RR2B337JQ RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.85 2
(EY907452) RR2DW05TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.85 2
(FD973137) RR2GY04TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.85 2
(FD960175) RR1GM06JQ RR1(CS) Raphanus raphanistrum subsp. ma... 32 0.85 2
(EY905325) RR2D712TF RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.86 2
(FD788273) 07VANA7_T7_003_G10_17FEB2006_068 07VANA7 Phaseolu... 32 0.86 2
(EY903386) RR2DW05JQ RR2(MS) Raphanus raphanistrum subsp. ra... 32 0.87 2
(AG988678) Hemicentrotus pulcherrimus BAC clone: BUB1-12C03_... 32 0.87 2
(AC181652) Strongylocentrotus purpuratus clone R3-10K16, WOR... 42 1.2 2
(AC184501) Strongylocentrotus purpuratus clone R3-16H10, WOR... 46 1.2 1
(AC181171) Strongylocentrotus purpuratus clone R3-15H9, WORK... 46 1.2 1
(AC180850) Strongylocentrotus purpuratus clone R3-3067P21, W... 46 1.2 1
(AC167377) Bos taurus clone CH240-192C22, WORKING DRAFT SEQU... 46 1.2 1
(EC607253) Y15E08 YLX600 Hevea brasiliensis cDNA clone Y15E0... 46 1.2 1
(EC604655) Y64H02 YLX600 Hevea brasiliensis cDNA clone Y64H0... 46 1.2 1
(CJ720689) Triticum aestivum cDNA clone whvd9a13 5', Y.Ogiha... 46 1.2 1
(BI875629) fl73b07.y1 Sugano Kawakami zebrafish DRA Danio re... 46 1.2 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 32 1.7 2
(AC011063) Drosophila melanogaster, chromosome 2L, region 25... 32 2.4 2
(AC177286) Strongylocentrotus purpuratus clone R3-44I15, WOR... 34 2.4 2
(AC177291) Strongylocentrotus purpuratus clone R3-44M14, WOR... 34 2.4 2
(AC015158) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 32 2.4 2
(AC010572) Drosophila melanogaster clone RPCI98-11N15, *** S... 32 2.4 2
(AC173624) Strongylocentrotus purpuratus clone R3-30L15, ***... 34 2.6 2
(CQ586445) Sequence 14203 from Patent WO0171042. 32 2.7 2
(CS133215) Sequence 37 from Patent WO2005061736. 32 2.7 2
(BT022140) Drosophila melanogaster IP01538 full insert cDNA. 32 2.9 2
(X98766) D.melanogaster mRNA for H15 protein. 32 3.0 2
(CQ586446) Sequence 14204 from Patent WO0171042. 32 3.0 2
(DN791993) 90198601 Sea Urchin primary mesenchyme cell cDNA ... 34 3.1 2
(EY387521) CAXA6806.fwd CAXA Helobdella robusta Subtracted L... 34 3.1 2
(CV745721) SJAL_060_07.T7 SJL Schistosoma japonicum cDNA, mR... 34 3.1 2
(BJ338020) Dictyostelium discoideum cDNA clone:dda59e23, 5' ... 32 3.1 2
(AC168348) Strongylocentrotus purpuratus clone R3-56O12, WOR... 42 4.1 2
(EE658670) CHES3504.b1_O11.ab1 CHE(LMS) serpentine sunflower... 36 4.7 2
(AY702468) Oxyuranus scutellatus scutellatus clone R50 endoc... 44 4.7 1
(AY094427) Arabidopsis thaliana AT5g22640/MDJ22_6 mRNA, comp... 44 4.7 1
(AC189318) Brassica rapa subsp. pekinensis clone KBrB036G18,... 44 4.7 1
(AC155883) Medicago truncatula chromosome 2 clone mte1-80o18... 44 4.7 1
(AB006699) Arabidopsis thaliana genomic DNA, chromosome 5, P... 44 4.7 1
(AC097410) Rattus norvegicus clone CH230-142D10, WORKING DRA... 44 4.7 1
(FJ789650) Brassica rapa subsp. pekinensis, pooled multiple ... 44 4.7 1
(CU695294) Brassica rapa subsp. pekinensis clone KBrH028G06,... 44 4.7 1
(AC201674) Strongylocentrotus purpuratus clone R3-1040H2, WO... 44 4.7 1
(AC201369) Strongylocentrotus purpuratus clone R3-17D12, WOR... 44 4.7 1
(AC181438) Strongylocentrotus purpuratus clone R3-50K16, WOR... 44 4.7 1
(AC181072) Strongylocentrotus purpuratus clone R3-3029F12, W... 44 4.7 1
(AC180745) Strongylocentrotus purpuratus clone R3-3083B24, W... 44 4.7 1
(AC180317) Strongylocentrotus purpuratus clone R3-3119D24, W... 44 4.7 1
(AC179351) Strongylocentrotus purpuratus clone R3-59C12, WOR... 44 4.7 1
(AC178292) Strongylocentrotus purpuratus clone R3-3095E21, W... 44 4.7 1
(AC177610) Strongylocentrotus purpuratus clone R3-1023J22, W... 44 4.7 1
(AC177064) Strongylocentrotus purpuratus clone R3-4004H24, W... 44 4.7 1
(AC175967) Strongylocentrotus purpuratus clone R3-3035E6, WO... 44 4.7 1
(AC175861) Strongylocentrotus purpuratus clone R3-15H21, WOR... 44 4.7 1
(AC175857) Strongylocentrotus purpuratus clone R3-15H22, WOR... 44 4.7 1
(AC165978) Bos taurus clone CH240-173C17, WORKING DRAFT SEQU... 44 4.7 1
(AK223784) Oryza punctata cDNA, clone: BBS02H01, expressed i... 44 4.7 1
(BH378376) AG-ND-172H16.TR ND-TAM Anopheles gambiae genomic ... 44 4.7 1
(AZ199563) SP_1039_B2_E02_SP6E Strongylocentrotus purpuratus... 44 4.7 1
(FI184233) MUGQ_CH252P032H03Sp6_GL434_010 CHORI-252 Vervet M... 44 4.7 1
(ET017081) MUGQ_CH252P322I01T7_CP602_007 CHORI-252 Vervet Mo... 44 4.7 1
(AL769015) Arabidopsis thaliana T-DNA flanking sequence GK-0... 44 4.7 1
(ED512237) KBrB095M04R KBrB, Brassica rapa BamHI BAC library... 44 4.7 1
(DX082457) KBrB095M04F KBrB, Brassica rapa BamHI BAC library... 44 4.7 1
(DX025589) KBrB020K02R KBrB, Brassica rapa BamHI BAC library... 44 4.7 1
(AL088038) Arabidopsis thaliana genome survey sequence SP6 e... 44 4.7 1
(CC000177) pPGSseq-9D12 pPGS Arachis hypogaea subsp. hypogae... 44 4.7 1
(DY396011) PES1036 Petunia embryosac SMART cDNA library Petu... 44 4.7 1
(DT260373) JGI_CAAU10880.fwd CAAU Pimephales promelas brain ... 44 4.7 1
(DT256612) JGI_CAAU7676.fwd CAAU Pimephales promelas brain 7... 44 4.7 1
(DT241491) JGI_CAAT11998.fwd CAAT Pimephales promelas brain ... 44 4.7 1
(DT204308) JGI_CAAS12395.fwd CAAS Pimephales promelas brain ... 44 4.7 1
(DT147266) JGI_ANNO27748.fwd ANNO Pimephales promelas Whole ... 44 4.7 1
(BG337653) 602435213F1 NIH_MGC_46 Homo sapiens cDNA clone IM... 44 4.7 1
(GO645764) EST_afim_evh_1055030 afimevh mixed_tissue Anoplop... 44 4.7 1
(GO619246) EST_afim_evh_744610 afimevh mixed_tissue Anoplopo... 44 4.7 1
(GO618865) EST_afim_evh_744394 afimevh mixed_tissue Anoplopo... 44 4.7 1
(FN009685) Petunia axillaris subsp. axillaris EST, clone dr0... 44 4.7 1
(FN008851) Petunia axillaris subsp. axillaris EST, clone dr0... 44 4.7 1
(FN006958) Petunia axillaris subsp. axillaris EST, clone dr0... 44 4.7 1
(FN003116) Petunia axillaris subsp. axillaris EST, clone dr0... 44 4.7 1
(FD814854) CBGZ18062.rev CBGZ Volvox carteri f. nagariensis ... 44 4.7 1
(FD807953) CBGZ13429.rev CBGZ Volvox carteri f. nagariensis ... 44 4.7 1
(FD708800) CAAA15051.fwd CAAA Petromyzon marinus Petromyzon ... 44 4.7 1
(EY392378) CAXA978.rev CAXA Helobdella robusta Subtracted La... 44 4.7 1
(EY389175) CAXA7706.rev CAXA Helobdella robusta Subtracted L... 44 4.7 1
(EY385489) CAXA5717.rev CAXA Helobdella robusta Subtracted L... 44 4.7 1
(EY384357) CAXA5105.rev CAXA Helobdella robusta Subtracted L... 44 4.7 1
(EY383997) CAXA4904.rev CAXA Helobdella robusta Subtracted L... 44 4.7 1
(EY373232) CAXA14450.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1
(EY373168) CAXA14414.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1
(EY372690) CAXA14144.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1
(EY371465) CAXA13460.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1
(EY367643) CAXA11366.rev CAXA Helobdella robusta Subtracted ... 44 4.7 1
(EY336625) CAWY7809.fwd CAWY Helobdella robusta Subtracted E... 44 4.7 1
(EY310158) CAWX21992.fwd CAWX Helobdella robusta Primary Ear... 44 4.7 1
(EY293044) CAWX10903.rev CAWX Helobdella robusta Primary Ear... 44 4.7 1
(BJ421626) Dictyostelium discoideum cDNA clone:ddv43f08, 5' ... 38 5.1 2
(DY892395) CeleSEQ10611 Cunninghamella elegans pBluescript (... 40 7.2 2
(AC126318) Rattus norvegicus clone CH230-16D11, *** SEQUENCI... 32 8.3 2
(AC197820) Macaca mulatta BAC CH250-426H12 (Children's Hosp... 30 8.5 2

>(C90544) Dictyostelium discoideum slug cDNA, clone SSI704.
Length = 457

Score = 234 bits (118), Expect(3) = 1e-75
Identities = 118/118 (100%)
Strand = Plus / Plus


Query: 1 agctaatcaattacaatcgtcatcatcatcaccatcgccttctttacagtcacaatcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agctaatcaattacaatcgtcatcatcatcaccatcgccttctttacagtcacaatcaca 60


Query: 61 atcaccctctttacaatcatcttcaaaatcaactccaaatctatcctcttctttatta 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaccctctttacaatcatcttcaaaatcaactccaaatctatcctcttctttatta 118

Score = 77.8 bits (39), Expect(3) = 1e-75
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 237 taatttatgaagattatgaccaagaatatagtatatagt 275
|||||||||||||||||||||||||||||||||||||||
Sbjct: 237 taatttatgaagattatgaccaagaatatagtatatagt 275

Score = 30.2 bits (15), Expect(3) = 1e-75
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 434 tctctattgtaatat 448
|||||||||||||||
Sbjct: 434 tctctattgtaatat 448

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 204,462,918
Number of extensions: 14124541
Number of successful extensions: 1790885
Number of sequences better than 10.0: 166
Length of query: 456
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 433
Effective length of database: 102,190,702,835
Effective search space: 44248574327555
Effective search space used: 44248574327555
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05479-1 (Contig-U05479-1Q) /CSM_Contig/Contig-U05479-1Q.Seq.d
(456 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54P47) RecName: Full=Probable serine/threonine-protein kinase ... 101 9e-21
AJ543649_1(AJ543649|pid:none) Pyrococcus furiosus smc gene. 35 0.83
CP001291_3219(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 34 1.8
(Q09560) RecName: Full=Uncharacterized protein F36G3.1; &T21865... 33 3.1
CP000529_1063(CP000529|pid:none) Polaromonas naphthalenivorans C... 32 5.4
CP000227_396(CP000227|pid:none) Bacillus cereus Q1, complete gen... 32 7.0
(B4TQ00) RecName: Full=Glutaminyl-tRNA synthetase; EC=6... 32 9.1
(Q8Z8F8) RecName: Full=Glutaminyl-tRNA synthetase; EC=6... 32 9.1
(A9MKA7) RecName: Full=Glutaminyl-tRNA synthetase; EC=6... 32 9.1
(A9MUG5) RecName: Full=Glutaminyl-tRNA synthetase; EC=6... 32 9.1
(A4W846) RecName: Full=Glutaminyl-tRNA synthetase; EC=6... 32 9.1

>(Q54P47) RecName: Full=Probable serine/threonine-protein kinase ndrC;
EC=2.7.11.1; AltName: Full=Nuclear DBF2-related
kinase C;
Length = 1335

Score = 101 bits (251), Expect = 9e-21
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +2

Query: 119 ENPVKEELEYKNQTENEVEIKKENESGEIQSLRDQLKEIIIYEDYDQEYSI 271
ENPVKEELEYKNQTENEVEIKKENES EIQSLRDQLKEIIIYEDYDQEYSI
Sbjct: 1285 ENPVKEELEYKNQTENEVEIKKENESEEIQSLRDQLKEIIIYEDYDQEYSI 1335

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 358,292,778
Number of extensions: 4264628
Number of successful extensions: 17257
Number of sequences better than 10.0: 11
Number of HSP's gapped: 17139
Number of HSP's successfully gapped: 11
Length of query: 152
Length of database: 1,061,185,681
Length adjustment: 114
Effective length of query: 38
Effective length of database: 688,582,609
Effective search space: 26166139142
Effective search space used: 26166139142
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.81 gvh: 0.52 alm: 0.64 top: 0.53 tms: 0.00 mit: 0.49 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: mitochondrial
20.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: cytoskeletal

>> prediction for Contig-U05479-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0