Contig-U05473-1
Contig ID Contig-U05473-1
Contig update 2001. 8.30
Contig sequence
>Contig-U05473-1 (Contig-U05473-1Q) /CSM_Contig/Contig-U05473-1Q.Seq.d
ATTTATATTTATTTAGATAGATAAATATTAGGAAAAAAAAAAATAAAAAA
TAAAAAAAATAAAAATAAAAATAAATAAATCAAAAAATAATAAAAAATAA
TAATAAATAAATTAAAAATAAAAATGTCAATTTTAGCACCAATTACTTCA
ACCTATGCAGGAATTCTAGGTATTTATTACCTTAAATTAACATTTGATAT
TGGCACAGAAAGAAGAAAAGCAAAAACTTCTATTGGTGATGGTTCACAAC
AATTAATTCAAAAGATAGTTGATGCTGGTAAAAGTGGAAAAACTGAAAAT
TTTTCAAAAATTCCTTTCATATGATGATCTTTTGNGATCAATTNGNGCAC
ATGGAAATTTTGCNGAATTTGTACCATTNGCATTNTTATTTTCATTAATT
TGTGAAATTAATGGAATTTCAAGTAAATTNTTAACTGGAATACTATTTAC
ATTAACAGTTTCAAGATTTTCTCATGCAACAGGACTAAGNGCAAGTAATG
TTGGNCGTAAAATTGGTGTCTCTCTTNCACTACTTTCAATTTTAATCCTT
TCAATTCTTTCTNTTTNTNTTCCAAATAAAGATACTATTTTTAATTTNTT
TAATTAAAAATTAAAATTAAAATTAAAATTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 694
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3089661
End point 3090360
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05473
List of clone(s)

est1=SSI640E,1,695
Translated Amino Acid sequence
fifi*idky*ekkk*kikkikikinksknnkk***in*k*kcqf*hqllqpmqef*vfit
ln*hlilaqkeekqklllvmvhnn*fkr*LMLVKVEKLKIFQKFLSYDDLLXSIXAHGNF
AEFVPXAXLFSLICEINGISSKXLTGILFTLTVSRFSHATGLXASNVGRKIGVSLXLLSI
LILSILSXXXPNKDTIFNXFN*klklklklkkkkkkkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
iyiyldr*ilgkkkiknkknknknk*ikk**kiiinklkikmsilapitstyagilgiyy
lkltfdigterrkaktsigdgsqqliqkivdagksgktenfskipfi**sfxinxxtwkf
cxictixixifinl*n*wnfk*ixnwntiyinsfkifscnrtkxk*cwx*nwclsxttfn
fnpfnsfxxxsk*ryyf*fx*lkikikikikkkkkkkkkkkkkkkkkkkkk


Frame B:
fifi*idky*ekkk*kikkikikinksknnkk***in*k*kcqf*hqllqpmqef*vfit
ln*hlilaqkeekqklllvmvhnn*fkr*LMLVKVEKLKIFQKFLSYDDLLXSIXAHGNF
AEFVPXAXLFSLICEINGISSKXLTGILFTLTVSRFSHATGLXASNVGRKIGVSLXLLSI
LILSILSXXXPNKDTIFNXFN*klklklklkkkkkkkkkkkkkkkkkkkkk


Frame C:
lylfr*inirkkknkk*kk*k*k*inqkiiknnnk*iknknvnfstnyfnlcrnsryllp
*ini*ywhrkkksknfyw*wfttinskds*cw*kwkn*kffknsfhmmifxdqxxhmeil
xnlyhxhxyfh*fvklmefqvnx*leyylh*qfqdflmqqd*xqvmlxvklvslxhyfqf
*sfqfflfxfqikilflixlikn*n*n*n*kkkkkkkkkkkkkkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05473-1 (Contig-U05473-1Q)
/CSM_Contig/Contig-U05473-1Q.Seq.d
(694 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05473-1 (Contig-U05473-1Q) /CSM_Contig/Conti... 817 0.0
Contig-U11929-1 (Contig-U11929-1Q) /CSM_Contig/Conti... 42 8e-04
Contig-U13044-1 (Contig-U13044-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U11429-1 (Contig-U11429-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U11254-1 (Contig-U11254-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U03923-1 (Contig-U03923-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U14703-1 (Contig-U14703-1Q) /CSM_Contig/Conti... 34 0.19
Contig-U11022-1 (Contig-U11022-1Q) /CSM_Contig/Conti... 34 0.19
Contig-U09599-1 (Contig-U09599-1Q) /CSM_Contig/Conti... 34 0.19
Contig-U09575-1 (Contig-U09575-1Q) /CSM_Contig/Conti... 34 0.19

>Contig-U05473-1 (Contig-U05473-1Q) /CSM_Contig/Contig-U05473-1Q.Seq.d
Length = 694

Score = 817 bits (412), Expect = 0.0
Identities = 465/472 (98%)
Strand = Plus / Plus


Query: 126 gtcaattttagcaccaattacttcaacctatgcaggaattctaggtatttattaccttaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtcaattttagcaccaattacttcaacctatgcaggaattctaggtatttattaccttaa 185


Query: 186 attaacatttgatattggcacagaaagaagaaaagcaaaaacttctattggtgatggttc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 attaacatttgatattggcacagaaagaagaaaagcaaaaacttctattggtgatggttc 245


Query: 246 acaacaattaattcaaaagatagttgatgctggtaaaagtggaaaaactgaaaatttttc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 acaacaattaattcaaaagatagttgatgctggtaaaagtggaaaaactgaaaatttttc 305


Query: 306 aaaaattcctttcatatgatgatcttttgngatcaattngngcacatggaaattttgcng 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaaattcctttcatatgatgatcttttgngatcaattngngcacatggaaattttgcng 365


Query: 366 aatttgtaccattngcattnttattttcattaatttgtgaaattaatggaatttcaagta 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aatttgtaccattngcattnttattttcattaatttgtgaaattaatggaatttcaagta 425


Query: 426 aattnttaactggaatactatttacattaacagtttcaagattttctcatgcaacaggac 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aattnttaactggaatactatttacattaacagtttcaagattttctcatgcaacaggac 485


Query: 486 taagngcaagtaatgttggncgtaaaattggtgtctctcttncactactttcaattttaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 taagngcaagtaatgttggncgtaaaattggtgtctctcttncactactttcaattttaa 545


Query: 546 tcctttcaattctttcnnnnnnnnnnccaaataaagatactatttttaattt 597
|||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 546 tcctttcaattctttctntttntnttccaaataaagatactatttttaattt 597


Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 1 atttatatttatttagatagataaatattagg 32
||||||||||||||||||||||||||||||||
Sbjct: 1 atttatatttatttagatagataaatattagg 32


>Contig-U11929-1 (Contig-U11929-1Q) /CSM_Contig/Contig-U11929-1Q.Seq.d
Length = 1567

Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 537 caattttaatcctttcaattctttc 561
|||||||||||||||||||| ||||
Sbjct: 182 caattttaatcctttcaattatttc 158


>Contig-U13044-1 (Contig-U13044-1Q) /CSM_Contig/Contig-U13044-1Q.Seq.d
Length = 570

Score = 36.2 bits (18), Expect = 0.049
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 246 acaacaattaattcaaaa 263
||||||||||||||||||
Sbjct: 375 acaacaattaattcaaaa 392


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8487
Number of Sequences: 6905
Number of extensions: 8487
Number of successful extensions: 971
Number of sequences better than 10.0: 113
length of query: 694
length of database: 5,674,871
effective HSP length: 16
effective length of query: 678
effective length of database: 5,564,391
effective search space: 3772657098
effective search space used: 3772657098
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.22
Homology vs DNA
Query= Contig-U05473-1 (Contig-U05473-1Q) /CSM_Contig/Contig-U05473-1Q.Seq.d
(694 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C90503) Dictyostelium discoideum slug cDNA, clone SSI640. 466 e-127 1
(AU073888) Dictyostelium discoideum slug cDNA, clone SSI640. 228 3e-67 2
(BJ426921) Dictyostelium discoideum cDNA clone:ddv60n17, 5' ... 52 1e-07 2
(AC111406) Rattus norvegicus clone CH230-158L13, *** SEQUENC... 46 2e-04 3
(AC128422) Rattus norvegicus clone CH230-31D13, WORKING DRAF... 46 3e-04 2
(CU896605) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.010 6
(AC154772) Mus musculus BAC clone RP24-448H7 from chromosome... 48 0.46 1
(AC147807) Mus musculus chromosome 9 clone RP23-114K10 map 9... 48 0.46 1
(EA380946) Sequence 29770 from patent US 7314974. 40 1.4 2
(FG289389) 1108793297217 New World Screwworm Egg 9261 ESTs C... 34 1.6 3
(CU856133) Zebrafish DNA sequence from clone CH1073-230G10 i... 46 1.8 1
(CR925753) Zebrafish DNA sequence from clone CH211-222B21 in... 46 1.8 1
(CR848021) Zebrafish DNA sequence from clone DKEY-219E21 in ... 46 1.8 1
(DX204125) OR_ABa0074F07.f OR_ABa Oryza ridleyi genomic clon... 46 1.8 1
(CU195857) Equus caballus GSS, BAC clone CH241-366F16, T7 en... 46 1.8 1
(CT999516) Equus caballus GSS, BAC clone CH241-65F8, SP6 end... 46 1.8 1
(CE042507) tigr-gss-dog-17000350332970 Dog Library Canis lup... 46 1.8 1
(BB558221) Mus musculus 2 days pregnant adult female ovary c... 46 1.8 1
(FH248528) CHO_OF3148xo11f1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 3.6 2
(CL678046) PRI0121d_G02_2 - PRI0121d.BR (803) Mixed stage fo... 42 4.0 2
(EJ164143) 1092344059233 Global-Ocean-Sampling_GS-27-01-01-1... 30 4.5 3
(CO121046) GR__Eb02A22.f GR__Eb Gossypium raimondii cDNA clo... 32 4.7 2
(CO114411) GR__Eb015I17.r GR__Eb Gossypium raimondii cDNA cl... 32 4.7 2
(CO122204) GR__Eb03L12.f GR__Eb Gossypium raimondii cDNA clo... 32 4.7 2
(CO121299) GR__Eb02G20.f GR__Eb Gossypium raimondii cDNA clo... 32 4.7 2
(DT466485) GH_CHX18P03.r GH_CHX Gossypium hirsutum cDNA clon... 32 4.7 2
(DR453153) CM010B11 Cotton Lambda Zap Express Library Gossyp... 32 4.8 2
(CO115595) GR__Eb017G16.r GR__Eb Gossypium raimondii cDNA cl... 32 4.8 2
(DN802893) G.hir-15-20 DAA bolls irrigated 1096 15-20 DAA bo... 32 4.9 2
(EV491133) 202E11 Cotton Lambda Zap Express Library Gossypiu... 32 4.9 2
(AM482574) Vitis vinifera contig VV78X172130.3, whole genome... 36 5.5 3
(AC087082) Caenorhabditis elegans cosmid Y92H12BM, complete ... 42 6.4 2
(CR936497) Zebrafish DNA sequence from clone DKEYP-30D5 in l... 44 7.2 1
(BV441075) S237P6104FF6.T0 PortugueseWaterDog Canis familiar... 44 7.2 1
(BV073000) S212P60323FG8.T0 CZECHII/Ei Mus musculus STS geno... 44 7.2 1
(AF291754) Mus musculus retinitis pigmentosa-1 (Rp1) gene, c... 44 7.2 1
(AC153959) Mus musculus 10 BAC RP24-511J14 (Roswell Park Can... 44 7.2 1
(AC113280) Mus musculus chromosome 1, clone RP23-391E12, com... 44 7.2 1
(AC090529) Rattus norvegicus strain Brown Norway clone RP31-... 44 7.2 1
(EF647608) Solanum lycopersicum chromosome 9 clone C09HBa027... 44 7.2 1
(DL143735) ALDOS AS MODIFIERS OF THE IGF PATHWAY AND METHODS... 44 7.2 1
(DL143734) ALDOS AS MODIFIERS OF THE IGF PATHWAY AND METHODS... 44 7.2 1
(DL067015) Cancer Gene Determination and Therapeutic Screeni... 44 7.2 1
(DL063327) Cancer Gene Determination and Therapeutic Screeni... 44 7.2 1
(BD428975) Method and nucleic acids for pharmacogenomic meth... 44 7.2 1
(AX348454) Sequence 149 from Patent WO0202806. 44 7.2 1
(AX335619) Sequence 6128 from Patent WO0194629. 44 7.2 1
(AX331931) Sequence 2440 from Patent WO0194629. 44 7.2 1
(GM887737) Sequence 204 from Patent WO2008137089. 44 7.2 1
(X07292) Homo sapiens gene for fructose bisphosphate aldolase. 44 7.2 1
(X05196) Human aldolase C gene. 44 7.2 1
(CR936850) Human DNA sequence from clone XX-HCC1954_35G04. 44 7.2 1
(AL162578) Human DNA sequence from clone RP11-2J18 on chromo... 44 7.2 1
(AC005726) Homo sapiens chromosome 17, clone hRPK.192_H_23,... 44 7.2 1
(AC162388) Mus musculus clone RP24-213N18, WORKING DRAFT SEQ... 44 7.2 1
(AC160412) Mus musculus clone RP24-511J14, WORKING DRAFT SEQ... 44 7.2 1
(AC109242) Mus musculus chromosome 10 clone RP23-140E15 map ... 44 7.2 1
(CU914394) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.2 1
(AC058792) Homo sapiens chromosome 6 clone RP11-769D19 map 6... 44 7.2 1
(CR936537) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 7.2 1
(AP000878) Homo sapiens genomic DNA, chromosome 11q25 clone:... 44 7.2 1
(AC190273) Macaca mulatta clone CH250-139H22, WORKING DRAFT ... 44 7.2 1
(DH522999) Rattus norvegicus DNA, BAC clone: RNB1-021B14, 5'... 44 7.2 1
(CE206858) tigr-gss-dog-17000372660975 Dog Library Canis lup... 44 7.2 1
(CE011194) tigr-gss-dog-17000321025073 Dog Library Canis lup... 44 7.2 1
(CC790667) ZMMBBb0160O02.f ZMMBBb Zea mays subsp. mays genom... 44 7.2 1
(AU261943) Dictyostelium discoideum vegetative cDNA clone:VS... 44 7.2 1
(BU507793) AGENCOURT_10095853 NIH_MGC_71 Homo sapiens cDNA c... 44 7.2 1
(BJ370870) Dictyostelium discoideum cDNA clone:ddc55c24, 5' ... 44 7.2 1
(GD588839) 454PCS0216530 Scarlet Runner Bean globular-stage ... 44 7.2 1
(FF441933) G178P60008RH12.T0 Acorn worm gastrula/neurula pCM... 44 7.2 1
(EY710672) CS00-C3-701-083-H04-CT.F Sweet orange fruit, deve... 44 7.2 1
(BX890610) Zebrafish DNA sequence from clone DKEY-122C9. 42 9.3 3

>(C90503) Dictyostelium discoideum slug cDNA, clone SSI640.
Length = 385

Score = 466 bits (235), Expect = e-127
Identities = 261/274 (95%)
Strand = Plus / Plus


Query: 313 cctttcatatgatgatcttttgngatcaattngngcacatggaaattttgcngaatttgt 372
|||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||
Sbjct: 1 cctttcatatgatgatcttttgggatcaattggggcacatggaaattttgcggaatttgt 60


Query: 373 accattngcattnttattttcattaatttgtgaaattaatggaatttcaagtaaattntt 432
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 61 accattggcatttttattttcattaatttgtgaaattaatggaatttcaagtaaattttt 120


Query: 433 aactggaatactatttacattaacagtttcaagattttctcatgcaacaggactaagngc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 aactggaatactatttacattaacagtttcaagattttctcatgcaacaggactaagggc 180


Query: 493 aagtaatgttggncgtaaaattggtgtctctcttncactactttcaattttaatcctttc 552
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 181 aagtaatgttgggcgtaaaattggtgtctctctttcactactttcaattttaatcctttc 240


Query: 553 aattctttctntttntnttccaaataaagatact 586
|||||||||| ||| | |||||||||||||||||
Sbjct: 241 aattctttcttttttttttccaaataaagatact 274

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 660,597,889
Number of extensions: 43798275
Number of successful extensions: 3788281
Number of sequences better than 10.0: 73
Length of query: 694
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 670
Effective length of database: 102,084,959,077
Effective search space: 68396922581590
Effective search space used: 68396922581590
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05473-1 (Contig-U05473-1Q) /CSM_Contig/Contig-U05473-1Q.Seq.d
(694 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CR954246_1521(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 41 1e-08
CP000644_1688(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 44 7e-07
CP000388_2867(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 39 9e-07
AP007255_2570(AP007255|pid:none) Magnetospirillum magneticum AMB... 43 9e-06
CP001510_4864(CP001510|pid:none) Methylobacterium extorquens AM1... 42 4e-05
CP001298_5037(CP001298|pid:none) Methylobacterium chloromethanic... 42 4e-05
CP001029_5217(CP001029|pid:none) Methylobacterium populi BJ001, ... 42 1e-04
CP000447_395(CP000447|pid:none) Shewanella frigidimarina NCIMB 4... 37 7e-04
CP000697_1891(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 44 0.004
CU633895_600(CU633895|pid:none) Podospora anserina genomic DNA c... 44 0.005
CP000943_1591(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 43 0.008
CU468135_1482(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 32 0.016
AE017340_1832(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 42 0.018
AM286690_969(AM286690|pid:none) Alcanivorax borkumensis SK2, com... 42 0.024
CU928158_1141(CU928158|pid:none) Escherichia fergusonii ATCC 354... 34 0.027
CP000675_2103(CP000675|pid:none) Legionella pneumophila str. Cor... 41 0.040
CP001103_1100(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 40 0.069
BA000032_752(BA000032|pid:none) Vibrio parahaemolyticus RIMD 221... 30 0.077
AC0250(AC0250) probable membrane protein YPO2051 [imported] - Ye... 33 0.16
CP001291_2501(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 39 0.20
CP000243_2039(CP000243|pid:none) Escherichia coli UTI89, complet... 32 0.20
CU928161_1858(CU928161|pid:none) Escherichia coli S88 chromosome... 32 0.21
AE005174_2625(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 32 0.26
AE005674_1910(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 32 0.27
(P64515) RecName: Full=Inner membrane protein yecN; &(P64516) R... 32 0.27
CP000514_3641(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 38 0.34
FP236842_1558(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 31 0.35
CP000653_2416(CP000653|pid:none) Enterobacter sp. 638, complete ... 31 0.45
CP000946_1725(CP000946|pid:none) Escherichia coli ATCC 8739, com... 32 0.59
CP000647_2348(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 34 0.76
CP000507_3340(CP000507|pid:none) Shewanella amazonensis SB2B, co... 36 1.3
CP000826_2776(CP000826|pid:none) Serratia proteamaculans 568, co... 31 1.6
CP000472_2032(CP000472|pid:none) Shewanella piezotolerans WP3, c... 35 1.7
CP001600_1513(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 34 3.8
CP000606_231(CP000606|pid:none) Shewanella loihica PV-4, complet... 34 3.8
AC2238(AC2238) hypothetical protein all3458 [imported] - Nostoc ... 33 6.4

>CR954246_1521(CR954246|pid:none) Pseudoalteromonas haloplanktis
str. TAC125 chromosome I, complete sequence.
Length = 124

Score = 41.2 bits (95), Expect(2) = 1e-08
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1

Query: 142 ITSTYAGILGIYYLKLTFDIGTERRKAKTSIGDGSQQLIQKIVDA 276
I STYA +L YY+ L+F++ RR A+ S+G+G +Q+ + A
Sbjct: 2 IISTYAALLAFYYIYLSFNVINVRRAAQISLGEGENPQLQRAIRA 46

Score = 41.2 bits (95), Expect(2) = 1e-08
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2

Query: 329 LLXSIXAHGNFAEFVPXAXLFSLICEINGISSKXLTGILFTLTVSRFSHATGLXASNVG- 505
L +I AHGNF E+VP A + + E G++S + L + R H G+ N+
Sbjct: 40 LQRAIRAHGNFMEYVPFAIILLFLAEYQGLASHYCHALGAMLLIGRVFHNFGIVEKNLKY 99

Query: 506 RKIGV 520
R+IGV
Sbjct: 100 RQIGV 104

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 559,575,707
Number of extensions: 7538386
Number of successful extensions: 14423
Number of sequences better than 10.0: 36
Number of HSP's gapped: 14423
Number of HSP's successfully gapped: 58
Length of query: 231
Length of database: 1,061,185,681
Length adjustment: 124
Effective length of query: 107
Effective length of database: 655,898,129
Effective search space: 70181099803
Effective search space used: 70181099803
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.76 gvh: 0.63 alm: 0.23 top: 0.37 tms: 0.07 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.06 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U05473-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0