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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05467-1
Contig ID Contig-U05467-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05467-1 (Contig-U05467-1Q) /CSM_Contig/Contig-U05467-1Q.Seq.d
GAAAAAACAAAAAAAAAAAATGATAAAAAAAGGAACTACTAAAACTGTAA
AAATAACAAGCTTTTTTGTTTATGGTACATTAAGACCTGATGATAATAGT
CAAGCACCATGGACAAAAGATTTTGTAAAAGGGTTAAAATTTAAAAAAGC
ACATTTTAGGGATGGAATTTTATTTTTNGATGAGTTTCCTACAGTATCTT
TATTATATAGTGATNATGACCATTACCATTCAGATGAGAGTAACCCTTCA
ATTAAGAAATTTGATGAAACCCTTATGAACCTATATAATGATAATCAGTG
TAATGGTATTGTTGGATATTTGGCAACTATTGACGAAACTTTATTGAGCG
ACACAAATGACATTGAAAAATTATTTGAAGAGAAATTGAAAGAGGCTGAT
ATAATTGAAGAGTATCCTGAAATTTATAAAAGATCAATCATTAAGGTGAA
ACATTTAAATGAAGATGGTGGTGATGCCAACAAGGATGGAGTTGTTGATG
GTAACCAAACTCAAAATGACCATACATATTGTTACATTTACCATAGAGAA
GATTGTAATAGAGAAACAATTATAGCACATGGTGATTGGGTAAAGAGAAA
CTTTTAAAAAAAAAATAAAAAAGAAAAAAAAAATTTTTTAAATGTTAAAA
TAAAAAAATAAAAAACACATAATAGAATTTTTTGATTAAATTAAAAA
Gap no gap
Contig length 697
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2128742
End point 2128045
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05467
List of clone(s) 

est1=SSI606E,1,698
Translated Amino Acid sequence 
KKQKKKMIKKGTTKTVKITSFFVYGTLRPDDNSQAPWTKDFVKGLKFKKAHFRDGILFXD
EFPTVSLLYSDXDHYHSDESNPSIKKFDETLMNLYNDNQCNGIVGYLATIDETLLSDTND
IEKLFEEKLKEADIIEEYPEIYKRSIIKVKHLNEDGGDANKDGVVDGNQTQNDHTYCYIY
HREDCNRETIIAHGDWVKRNF*kknkkekknflnvkikk*kthnrif*ln*k
Translated Amino Acid sequence (All Frames) 
Frame A:
ektkkkndkkrny*ncknnklfclwyikt****sstmdkrfckrvki*kstf*gwnfifx
*vsysifii**x*plpfr*e*pfn*ei**npyepi***sv*wycwifgny*rnfierhk*
h*kii*reierg*yn*rvs*nl*kinh*getfk*rww*cqqgwsc*w*pnsk*pyillhl
p*rrl**rnnystw*lgkekllkkk*krkkkffkc*nkkiknt**nfliklk


Frame B:
KKQKKKMIKKGTTKTVKITSFFVYGTLRPDDNSQAPWTKDFVKGLKFKKAHFRDGILFXD
EFPTVSLLYSDXDHYHSDESNPSIKKFDETLMNLYNDNQCNGIVGYLATIDETLLSDTND
IEKLFEEKLKEADIIEEYPEIYKRSIIKVKHLNEDGGDANKDGVVDGNQTQNDHTYCYIY
HREDCNRETIIAHGDWVKRNF*kknkkekknflnvkikk*kthnrif*ln*k


Frame C:
knkkkk**kkellkl*k*qaflfmvh*dlmiivkhhgqkil*kg*nlkkhilgmefyfxm
sflqylyyivxmtitiqmrvtlqlrnlmkpl*tyimiisvmvlldiwqlltkly*atqmt
lknylkrn*krli*lksilkfikdqslr*ni*mkmvvmptrmellmvtklkmtihivtft
iekiviekql*hmvig*retfkkkikkkkkif*mlk*knkkhiieffd*ik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05467-1 (Contig-U05467-1Q)
/CSM_Contig/Contig-U05467-1Q.Seq.d
         (697 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05467-1 (Contig-U05467-1Q) /CSM_Contig/Conti...  1126  0.0
Contig-U06827-1 (Contig-U06827-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14190-1 (Contig-U14190-1Q) /CSM_Contig/Conti...    36  0.049
Contig-U12866-1 (Contig-U12866-1Q) /CSM_Contig/Conti...    36  0.049
Contig-U12382-1 (Contig-U12382-1Q) /CSM_Contig/Conti...    36  0.049
Contig-U11325-1 (Contig-U11325-1Q) /CSM_Contig/Conti...    36  0.049
Contig-U12542-1 (Contig-U12542-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U11923-1 (Contig-U11923-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U11450-1 (Contig-U11450-1Q) /CSM_Contig/Conti...    34  0.19

>Contig-U05467-1 (Contig-U05467-1Q) /CSM_Contig/Contig-U05467-1Q.Seq.d
          Length = 697

 Score = 1126 bits (568), Expect = 0.0
 Identities = 574/574 (100%)
 Strand = Plus / Plus

                                                                       
Query: 32  ggaactactaaaactgtaaaaataacaagcttttttgtttatggtacattaagacctgat 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32  ggaactactaaaactgtaaaaataacaagcttttttgtttatggtacattaagacctgat 91

                                                                       
Query: 92  gataatagtcaagcaccatggacaaaagattttgtaaaagggttaaaatttaaaaaagca 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  gataatagtcaagcaccatggacaaaagattttgtaaaagggttaaaatttaaaaaagca 151

                                                                       
Query: 152 cattttagggatggaattttatttttngatgagtttcctacagtatctttattatatagt 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 cattttagggatggaattttatttttngatgagtttcctacagtatctttattatatagt 211

                                                                       
Query: 212 gatnatgaccattaccattcagatgagagtaacccttcaattaagaaatttgatgaaacc 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gatnatgaccattaccattcagatgagagtaacccttcaattaagaaatttgatgaaacc 271

                                                                       
Query: 272 cttatgaacctatataatgataatcagtgtaatggtattgttggatatttggcaactatt 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cttatgaacctatataatgataatcagtgtaatggtattgttggatatttggcaactatt 331

                                                                       
Query: 332 gacgaaactttattgagcgacacaaatgacattgaaaaattatttgaagagaaattgaaa 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gacgaaactttattgagcgacacaaatgacattgaaaaattatttgaagagaaattgaaa 391

                                                                       
Query: 392 gaggctgatataattgaagagtatcctgaaatttataaaagatcaatcattaaggtgaaa 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaggctgatataattgaagagtatcctgaaatttataaaagatcaatcattaaggtgaaa 451

                                                                       
Query: 452 catttaaatgaagatggtggtgatgccaacaaggatggagttgttgatggtaaccaaact 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 catttaaatgaagatggtggtgatgccaacaaggatggagttgttgatggtaaccaaact 511

                                                                       
Query: 512 caaaatgaccatacatattgttacatttaccatagagaagattgtaatagagaaacaatt 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 caaaatgaccatacatattgttacatttaccatagagaagattgtaatagagaaacaatt 571

                                             
Query: 572 atagcacatggtgattgggtaaagagaaactttt 605
           ||||||||||||||||||||||||||||||||||
Sbjct: 572 atagcacatggtgattgggtaaagagaaactttt 605


 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 666 cacataatagaattttttgattaaattaaaaa 697
           ||||||||||||||||||||||||||||||||
Sbjct: 666 cacataatagaattttttgattaaattaaaaa 697


>Contig-U06827-1 (Contig-U06827-1Q) /CSM_Contig/Contig-U06827-1Q.Seq.d
          Length = 486

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 457 aaatgaagatggtggtgatg 476
           ||||||||||||||||||||
Sbjct: 199 aaatgaagatggtggtgatg 218


>Contig-U14190-1 (Contig-U14190-1Q) /CSM_Contig/Contig-U14190-1Q.Seq.d
          Length = 1316

 Score = 36.2 bits (18), Expect = 0.049
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                     
Query: 367 aaaattatttgaagagaaattgaaag 392
           ||||||||||||| ||||||| ||||
Sbjct: 309 aaaattatttgaaaagaaatttaaag 284


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,798
Number of Sequences: 6905
Number of extensions: 11798
Number of successful extensions: 1196
Number of sequences better than 10.0: 128
length of query: 697
length of database: 5,674,871
effective HSP length: 16
effective length of query: 681
effective length of database: 5,564,391
effective search space: 3789350271
effective search space used: 3789350271
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.21
Homology vs DNA 
Query= Contig-U05467-1 (Contig-U05467-1Q) /CSM_Contig/Contig-U05467-1Q.Seq.d
         (697 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90274) Dictyostelium discoideum slug cDNA, clone SSI606.        841   0.0    2
(AU073872) Dictyostelium discoideum slug cDNA, clone SSI606.      359   1e-94  1
(AC205539) Tribolium castaneum 3 BAC MEDEA BAC 22J23 complet...    48   0.47   1
(AC005959) Homo sapiens, *** SEQUENCING IN PROGRESS ***, 2 o...    48   0.47   1
(FC832622) CBHI4623.fwd CBHI Metridium senile tentacle Metri...    48   0.47   1
(AC009627) Homo sapiens chromosome 8 clone RP11-322N9 map 8,...    46   0.48   4
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    32   0.81   9
(CT573310) Zebrafish DNA sequence from clone DKEY-168M18 in ...    42   0.85   2
(AC211052) Solanum lycopersicum chromosome 6 clone C06HBa012...    38   0.90   4
(DY766070) 24H_new13_H11 Bicyclus anynana wings - 24H pupae ...    34   1.3    2
(AM425466) Vitis vinifera contig VV78X022497.11, whole genom...    42   1.3    3
(EK269673) 1095462250885 Global-Ocean-Sampling_GS-31-01-01-1...    30   1.5    3
(CT573172) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   1.7    2
(AM485795) Vitis vinifera contig VV78X103884.18, whole genom...    30   1.8    7
(AL929290) Zebrafish DNA sequence from clone CH211-67N1.           46   1.8    1
(AC117834) Homo sapiens chromosome 8, clone CTD-3239E11, com...    46   1.8    1
(CT027712) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.8    1
(AC013508) Homo sapiens clone RP11-115I6, WORKING DRAFT SEQU...    46   1.8    1
(DE896417) Macropus eugenii DNA, BAC clone: MEB1-074P14_F, 5...    46   1.8    1
(BP623406) Arabidopsis thaliana cDNA clone:RAFL17-06-K20, 3'...    46   1.8    1
(FE522234) mat2921785 Radiata pine mature earlywood cDNA lib...    46   1.8    1
(EY760988) CR05-C1-100-034-D12-CT.F Mandarin leaf, greenhous...    46   1.8    1
(EA654251) Sequence 33130 from patent US 7365185.                  38   2.0    2
(EA654246) Sequence 33125 from patent US 7365185.                  38   2.0    2
(AL353581) Human DNA sequence from clone RP11-65L19 on chrom...    42   2.2    4
(BJ445978) Dictyostelium discoideum cDNA clone:ddv61b11, 3' ...    36   3.8    2
(EI340799) GM_WBc0084I24.f GM_WBc Glycine max genomic clone ...    32   4.6    3
(AU072755) Dictyostelium discoideum slug cDNA, clone SSA758.       36   4.7    2
(FE967594) PLATE_T3_039_H12_02DEC2004_082 Opium poppy elicit...    34   4.8    2
(EK098542) 1092962056484 Global-Ocean-Sampling_GS-31-01-01-1...    36   5.1    3
(EA102644) Sequence 27 from patent US 7195870.                     32   5.6    5
(BD428883) Method and nucleic acids for pharmacogenomic meth...    32   5.6    5
(AX348362) Sequence 57 from Patent WO0202806.                      32   5.6    5
(AX323549) Sequence 37 from Patent WO0192565.                      32   5.6    5
(AX277864) Sequence 27 from Patent WO0177375.                      32   5.6    5
(GM995897) Sequence 37 from Patent EP2014776.                      32   5.6    5
(EJ362344) 1092963691813 Global-Ocean-Sampling_GS-28-01-01-1...    32   6.1    3
(DR573457) WS00734.B21_P07 WS-PS-N-A-8 Picea glauca cDNA clo...    36   6.3    2
(DR572542) WS00732.B21_E23 WS-PS-N-A-8 Picea glauca cDNA clo...    36   6.3    2
(AC221242) Bos taurus clone CH240-400I9, WORKING DRAFT SEQUE...    36   6.4    8
(AU269343) Dictyostelium discoideum vegetative cDNA clone:VS...    36   6.5    2
(AC004061) Homo sapiens chromosome 4 clone B299F15 map 4q21,...    40   7.1    5
(BX649302) Zebrafish DNA sequence from clone CH211-248I6 in ...    44   7.3    1
(BX323071) Zebrafish DNA sequence from clone DKEYP-51F12 in ...    44   7.3    1
(BC167476) Danio rerio desmocollin 2 like, mRNA (cDNA clone ...    44   7.3    1
(AL805912) Mouse DNA sequence from clone RP23-425K3 on chrom...    44   7.3    1
(AC218846) Bos taurus clone CH240-292F18, WORKING DRAFT SEQU...    44   7.3    1
(AC175798) Atelerix albiventris clone LB4-454C21, WORKING DR...    44   7.3    1
(AC169608) Bos taurus clone CH240-208L3, WORKING DRAFT SEQUE...    44   7.3    1
(AZ033830) RPCI-23-246A12.TV RPCI-23 Mus musculus genomic cl...    44   7.3    1
(FH778304) OSB_1169004xl03f1.ab1 OSB_1169 Nicotiana tabacum ...    44   7.3    1
(FH777474) OSB_1169002xk12f1.ab1 OSB_1169 Nicotiana tabacum ...    44   7.3    1
(FH777009) OSB_1169005xf15r1.ab1 OSB_1169 Nicotiana tabacum ...    44   7.3    1
(FH776194) OSB_1169003xo02r1.ab1 OSB_1169 Nicotiana tabacum ...    44   7.3    1
(FH776181) OSB_1169003xk20r1.ab1 OSB_1169 Nicotiana tabacum ...    44   7.3    1
(FH715947) CHO_OF5050xh13f1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   7.3    1
(FH337867) CHO_OF4598xf03r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.3    1
(FH175703) CHO_OF3400xd13r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   7.3    1
(ER581648) 1093015843215 Global-Ocean-Sampling_GS-36-01-01-2...    44   7.3    1
(EJ481026) 1095403469323 Global-Ocean-Sampling_GS-28-01-01-1...    44   7.3    1
(EI312111) GM_WBc0043H08.r GM_WBc Glycine max genomic clone ...    44   7.3    1
(CU005253) Equus caballus GSS, BAC clone CH241-73F3, T7 end ...    44   7.3    1
(CL856943) OR_CBa0087E20.r OR_CBa Oryza rufipogon genomic cl...    44   7.3    1
(EH529129) FDR107-P00053-DEPE-R_O15 FDR107 Danio rerio cDNA ...    44   7.3    1
(EH502931) FDR107-P00053-DEPE-F_O15 FDR107 Danio rerio cDNA ...    44   7.3    1
(EB922808) 12371047 ZF31 Danio rerio cDNA clone 3269706, mRN...    44   7.3    1
(EB922699) 12366520 ZF31 Danio rerio cDNA clone 3269706, mRN...    44   7.3    1
(DW346289) PP_LEc0007L17f Peach shoot Prunus persica cDNA cl...    44   7.3    1
(DR946121) EST1137660 Aquilegia cDNA library Aquilegia formo...    44   7.3    1
(DR919009) EST1110548 Aquilegia cDNA library Aquilegia formo...    44   7.3    1
(DN869553) nac40g06.x1 Dog eye lens. Unnormalized (nac) Cani...    44   7.3    1
(DN857895) naa19f05.y1 Zebrafish whole eye. Unnormalized (na...    44   7.3    1
(CK832996) 4056833 BARC 8BOV Bos taurus cDNA clone 8BOV_20A1...    44   7.3    1
(CK400140) AGENCOURT_17517282 NIH_ZGC_4 Danio rerio cDNA clo...    44   7.3    1
(CJ402297) Molgula tectiformis cDNA, gonad clone:mtgd017g22,...    44   7.3    1
(CJ391700) Molgula tectiformis cDNA, gonad clone:mtgd017g22,...    44   7.3    1
(CJ356207) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   7.3    1
(CJ133665) Mus musculus adult retina cDNA, RIKEN full-length...    44   7.3    1
(CJ061191) Mus musculus 10 days neonate cerebellum cDNA, RIK...    44   7.3    1
(CB443625) 694537 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.     44   7.3    1
(CB443271) 694141 MARC 6BOV Bos taurus cDNA 5', mRNA sequence.     44   7.3    1
(BQ259537) faa01c08.y1 zebrafish fin day1 regeneration Danio...    44   7.3    1
(BQ259227) fz96g07.y1 zebrafish fin day1 regeneration Danio ...    44   7.3    1
(AI396831) fb15f03.x1 zebrafish fin day0 regeneration Danio ...    44   7.3    1
(AI331220) fa94h05.x1 zebrafish fin day1 regeneration Danio ...    44   7.3    1
(AI330625) fa96h12.x1 zebrafish fin day3 regeneration Danio ...    44   7.3    1
(AI330582) fa96d03.x1 zebrafish fin day3 regeneration Danio ...    44   7.3    1
(BI888550) ZF637-2-000305 Zebrafish shield stage whole embry...    44   7.3    1
(BI880980) fm83a05.y1 Zebrafish Research Genetics C32 fin Da...    44   7.3    1
(BE605460) fl10b06.x1 Zebrafish Research Genetics C32 fin Da...    44   7.3    1
(BE557133) fk94g10.y1 Zebrafish Research Genetics C32 fin Da...    44   7.3    1
(BE557110) fk94e02.y1 Zebrafish Research Genetics C32 fin Da...    44   7.3    1
(BB900093) Macaca fascicularis cDNA clone: Qlv-U330A-E9, 3'e...    44   7.3    1
(GO187011) CAGB11022.fwd CAGB Alvinella pompejana Normalized...    44   7.3    1
(GO164480) CAGA40990.fwd CAGA Alvinella pompejana Normalized...    44   7.3    1
(GO161023) CAGA39380.fwd CAGA Alvinella pompejana Normalized...    44   7.3    1
(GO118088) CAGA18358.fwd CAGA Alvinella pompejana Normalized...    44   7.3    1
(GE612248) CCPX9021.b1_J23.ab1 CCP(UWX) Globe Artichoke Cyna...    44   7.3    1
(GE597378) CCPW5921.b1_B17.ab1 CCP(UWX) Globe Artichoke Cyna...    44   7.3    1
(FG907354) UCRVU08_CCNS5101_b1 Cowpea IT97K-461-4 Mixed Tiss...    44   7.3    1
(FC461591) UCRVU11_CCNW740_b1 Cowpea UCR 41 Mixed Tissue and...    44   7.3    1
(AW567007) fk30g01.x1 zebrafish fin day1 regeneration Danio ...    44   7.3    1
(EY008485) CBAI2861.g1:P T. versicolor root tip enriched SSH...    44   7.3    1
(DQ364632) Gibberella zeae mitochondrion, complete genome.         36   7.8    4

>(C90274) Dictyostelium discoideum slug cDNA, clone SSI606.
          Length = 523

 Score =  841 bits (424), Expect(2) = 0.0
 Identities = 426/427 (99%)
 Strand = Plus / Plus


Query: 179 gatgagtttcctacagtatctttattatatagtgatnatgaccattaccattcagatgag 238
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4   gatgagtttcctacagtatctttattatatagtgatcatgaccattaccattcagatgag 63


Query: 239 agtaacccttcaattaagaaatttgatgaaacccttatgaacctatataatgataatcag 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  agtaacccttcaattaagaaatttgatgaaacccttatgaacctatataatgataatcag 123


Query: 299 tgtaatggtattgttggatatttggcaactattgacgaaactttattgagcgacacaaat 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgtaatggtattgttggatatttggcaactattgacgaaactttattgagcgacacaaat 183


Query: 359 gacattgaaaaattatttgaagagaaattgaaagaggctgatataattgaagagtatcct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gacattgaaaaattatttgaagagaaattgaaagaggctgatataattgaagagtatcct 243


Query: 419 gaaatttataaaagatcaatcattaaggtgaaacatttaaatgaagatggtggtgatgcc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gaaatttataaaagatcaatcattaaggtgaaacatttaaatgaagatggtggtgatgcc 303


Query: 479 aacaaggatggagttgttgatggtaaccaaactcaaaatgaccatacatattgttacatt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aacaaggatggagttgttgatggtaaccaaactcaaaatgaccatacatattgttacatt 363


Query: 539 taccatagagaagattgtaatagagaaacaattatagcacatggtgattgggtaaagaga 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taccatagagaagattgtaatagagaaacaattatagcacatggtgattgggtaaagaga 423


Query: 599 aactttt 605
           |||||||
Sbjct: 424 aactttt 430

 Score = 63.9 bits (32), Expect(2) = 0.0
 Identities = 32/32 (100%)
 Strand = Plus / Plus


Query: 666 cacataatagaattttttgattaaattaaaaa 697
           ||||||||||||||||||||||||||||||||
Sbjct: 491 cacataatagaattttttgattaaattaaaaa 522

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 865,867,980
Number of extensions: 57418847
Number of successful extensions: 4638800
Number of sequences better than 10.0: 105
Length of query: 697
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 673
Effective length of database: 102,084,959,077
Effective search space: 68703177458821
Effective search space used: 68703177458821
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05467-1 (Contig-U05467-1Q) /CSM_Contig/Contig-U05467-1Q.Seq.d
         (697 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014187_151(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.7
AJ938182_1350(AJ938182|pid:none) Staphylococcus aureus RF122 com...    35   2.2
CP001107_469(CP001107|pid:none) Eubacterium rectale ATCC 33656, ...    34   3.8
Z98547_1(Z98547|pid:none) Plasmodium falciparum MAL3P3, complete...    34   5.0
AL844507_268(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    34   5.0
AE014187_607(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   5.0
AL034558_44(AL034558|pid:none) Plasmodium falciparum MAL3P2, com...    34   5.0
AF1482(AF1482) hypothetical protein lin0397 [imported] - Listeri...    34   5.0
AE014186_388(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.5
(B0R748) RecName: Full=Peptide chain release factor subunit 1; A...    33   6.5
NRL(2NADB) Nad-dependent formate dehydrogenase (EC 1.2.1.2) (hol...    33   6.5
AE001362_146(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.5
AE004437_1626(AE004437|pid:none) Halobacterium sp. NRC-1, comple...    33   6.5
NRL(2NADA) Nad-dependent formate dehydrogenase (EC 1.2.1.2) (hol...    33   6.5
NRL(2NACA) Nad-dependent formate dehydrogenase (EC 1.2.1.2) (apo...    33   6.5
FN359299_9(FN359299|pid:none) Schistosoma mansoni genome sequenc...    33   6.5
AL844503_32(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    33   8.5
A84404(A84404) hypothetical protein Vng2539h [imported] - Haloba...    33   8.5
AL034557_32(AL034557|pid:none) Plasmodium falciparum MAL4P1.           33   8.5
FJ531865_1(FJ531865|pid:none) Streptococcus sp. 'group C' isolat...    33   8.5

>AE014187_151(AE014187|pid:none) Plasmodium falciparum 3D7 chromosome
            14, complete sequence.  &AE014818_31(AE014818|pid:none)
          Length = 1151

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 31/116 (26%), Positives = 56/116 (48%)
 Frame = +2

Query: 203  LYSDXDHYHSDESNPSIKKFDETLMNLYNDNQCNGIVGYLATIDETLLSDTNDIEKLFEE 382
            L+SD   Y ++ +NP +  +       Y +N  NG        D+  L   N + K F++
Sbjct: 811  LFSDNQRYFTN-NNPYVNNY------YYKNNNHNG--------DDKNLHMMNKL-KYFDQ 854

Query: 383  KLKEADIIEEYPEIYKRSIIKVKHLNEDGGDANKDGVVDGNQTQNDHTYCYIYHRE 550
               E  I E  P+ +  +I K+ H N +G + NK+ +   NQ +N++    IY+++
Sbjct: 855  ---EHFINEVNPKYFNSNINKINHYNYNGKNNNKNNI---NQYENENDNINIYNKK 904

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 822,402,471
Number of extensions: 13768792
Number of successful extensions: 75636
Number of sequences better than 10.0: 20
Number of HSP's gapped: 75567
Number of HSP's successfully gapped: 20
Length of query: 232
Length of database: 1,061,185,681
Length adjustment: 124
Effective length of query: 108
Effective length of database: 655,898,129
Effective search space: 70836997932
Effective search space used: 70836997932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.68  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U05467-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0