Contig-U05453-1
Contig ID Contig-U05453-1
Contig update 2001. 8.30
Contig sequence
>Contig-U05453-1 (Contig-U05453-1Q) /CSM_Contig/Contig-U05453-1Q.Seq.d
CAACAACTCTATTAATAGCCACAACATAAATTTTACTGGGGGTGATGGCG
ACATACCAAATAATGATAATTTAAATAATTTTGAAAATAATTTCAAAAAA
AAAAATAATTTAATTTTTAACACAAATAATTTTAATAATAATAATAATAA
TAATAATAATAATAATAA

Gap no gap
Contig length 168
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2052352
End point 2052520
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05453
List of clone(s)

est1=SSI486F,1,169
Translated Amino Acid sequence
NNSINSHNINFTGGDGDIPNNDNLNNFENNFKKKNNLIFNTNNFNNNNNNNNNNN


Translated Amino Acid sequence (All Frames)
Frame A:
qqly**pqhkfywg*wrhtk***fk*f*k*fqkkk*fnf*hk*f************


Frame B:
NNSINSHNINFTGGDGDIPNNDNLNNFENNFKKKNNLIFNTNNFNNNNNNNNNNN


Frame C:
ttlliatt*illgvmatyqimii*iilkiiskkkii*fltqiiliiiiiiiiiii


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05453-1 (Contig-U05453-1Q)
/CSM_Contig/Contig-U05453-1Q.Seq.d
(168 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05453-1 (Contig-U05453-1Q) /CSM_Contig/Conti... 186 5e-48
Contig-U11350-1 (Contig-U11350-1Q) /CSM_Contig/Conti... 40 7e-04
Contig-U10981-1 (Contig-U10981-1Q) /CSM_Contig/Conti... 40 7e-04
Contig-U03911-1 (Contig-U03911-1Q) /CSM_Contig/Conti... 38 0.003
Contig-U06638-1 (Contig-U06638-1Q) /CSM_Contig/Conti... 36 0.011
Contig-U05976-1 (Contig-U05976-1Q) /CSM_Contig/Conti... 36 0.011
Contig-U14858-1 (Contig-U14858-1Q) /CSM_Contig/Conti... 34 0.043
Contig-U14749-1 (Contig-U14749-1Q) /CSM_Contig/Conti... 34 0.043
Contig-U14637-1 (Contig-U14637-1Q) /CSM_Contig/Conti... 34 0.043
Contig-U14114-1 (Contig-U14114-1Q) /CSM_Contig/Conti... 34 0.043

>Contig-U05453-1 (Contig-U05453-1Q) /CSM_Contig/Contig-U05453-1Q.Seq.d
Length = 168

Score = 186 bits (94), Expect = 5e-48
Identities = 94/94 (100%)
Strand = Plus / Plus


Query: 1 caacaactctattaatagccacaacataaattttactgggggtgatggcgacataccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacaactctattaatagccacaacataaattttactgggggtgatggcgacataccaaa 60


Query: 61 taatgataatttaaataattttgaaaataatttc 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 taatgataatttaaataattttgaaaataatttc 94


>Contig-U11350-1 (Contig-U11350-1Q) /CSM_Contig/Contig-U11350-1Q.Seq.d
Length = 1881

Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 51 acataccaaataatgataat 70
||||||||||||||||||||
Sbjct: 1047 acataccaaataatgataat 1028


>Contig-U10981-1 (Contig-U10981-1Q) /CSM_Contig/Contig-U10981-1Q.Seq.d
Length = 1510

Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 68 aatttaaataattttgaaaataat 91
||||||||||||||| ||||||||
Sbjct: 141 aatttaaataattttaaaaataat 164


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3524
Number of Sequences: 6905
Number of extensions: 3524
Number of successful extensions: 1586
Number of sequences better than 10.0: 278
length of query: 168
length of database: 5,674,871
effective HSP length: 15
effective length of query: 153
effective length of database: 5,571,296
effective search space: 852408288
effective search space used: 852408288
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.21
Homology vs DNA
Query= Contig-U05453-1 (Contig-U05453-1Q) /CSM_Contig/Contig-U05453-1Q.Seq.d
(168 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU073832) Dictyostelium discoideum slug cDNA, clone SSI486. 186 2e-43 1
(CK573331) 137 Plasmodium yoelii liver stage LCM cDNA librar... 52 0.006 1
(BM164216) EST566739 PyBS Plasmodium yoelii yoelii cDNA clon... 52 0.006 1
(BM159779) EST562302 PyBS Plasmodium yoelii yoelii cDNA clon... 52 0.006 1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 50 0.026 1
(EK219256) 1095460134502 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.026 1
(EK014353) 1092955221132 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.026 1
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 48 0.060 2
(EJ864030) 1093018242228 Global-Ocean-Sampling_GS-30-02-01-1... 36 0.079 2
(EJ891984) 1093018447980 Global-Ocean-Sampling_GS-30-02-01-1... 36 0.079 2
(GO067167) PmTwI11B12.scf PmTwI Penaeus monodon cDNA 3', mRN... 48 0.10 1
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 48 0.10 1
(DQ682332) Synthetic construct Francisella tularensis clone ... 40 0.11 2
(DQ682147) Synthetic construct Francisella tularensis clone ... 40 0.11 2
(AC140127) Homo sapiens chromosome 5 clone RP11-1085P23, WOR... 34 0.22 2
(AC141595) Homo sapiens chromosome 5 clone RP11-1299M21, WOR... 34 0.23 2
(AC139790) Homo sapiens chromosome 5 clone RP11-1207A8, WORK... 34 0.23 2
(AC139792) Homo sapiens chromosome 5 clone RP11-1250I15, com... 34 0.23 2
(AC138856) Homo sapiens chromosome 5 clone RP11-1343J14, WOR... 34 0.23 2
(AC109475) Homo sapiens chromosome 5 clone RP11-416F23, comp... 34 0.23 2
(AC139797) Homo sapiens chromosome 5 clone RP11-1301O4, WORK... 34 0.23 2
(AC138409) Homo sapiens chromosome 5 clone RP11-1023L17, com... 34 0.23 2
(AC138868) Homo sapiens chromosome 5 clone RP11-1431A5, WORK... 34 0.23 2
(AC138858) Homo sapiens chromosome 5 clone RP11-1360E24, WOR... 34 0.23 2
(AC140012) Homo sapiens chromosome 5 clone RP11-1290F3, WORK... 34 0.23 2
(AC138411) Homo sapiens chromosome 5 clone RP11-864N22, comp... 34 0.23 2
(AC138933) Homo sapiens chromosome 5 clone RP11-684I13, WORK... 34 0.23 2
(AC138938) Homo sapiens chromosome 5 clone RP11-697E23, comp... 34 0.23 2
(AL157879) Human DNA sequence from clone RP11-110H4 on chrom... 34 0.23 2
(AC093243) Homo sapiens chromosome 5 clone RP11-110H4, compl... 34 0.23 2
(AC010637) Homo sapiens chromosome 5 clone CTD-2343I4, WORKI... 34 0.23 2
(AC010421) Homo sapiens chromosome 5 clone CTD-2191P18, comp... 34 0.23 2
(AC124850) Homo sapiens chromosome 5 clone CTD-2166H5, compl... 34 0.24 2
(EJ626173) 1092963177065 Global-Ocean-Sampling_GS-29-01-01-1... 34 0.29 2
(EJ630444) 1092963359835 Global-Ocean-Sampling_GS-29-01-01-1... 34 0.29 2
(EJ304447) 1095390067717 Global-Ocean-Sampling_GS-27-01-01-1... 34 0.30 2
(ED082828) AUAC-aah21f04.g1 Ascaris suum whole genome shotgu... 36 0.30 2
(BF061510) 7j52d11.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie... 34 0.30 2
(AM446970) Vitis vinifera contig VV78X109667.3, whole genome... 46 0.40 1
(GP410938) Sequence 57670 from patent US 7511127. 46 0.40 1
(GP124113) Sequence 57670 from patent US 7468248. 46 0.40 1
(AC153438) Bos taurus clone CH240-20M11, WORKING DRAFT SEQUE... 46 0.40 1
(CR940353) Theileria annulata genomic DNA chromosome 4. 46 0.40 1
(AC223034) Bos taurus clone CH240-431K1, WORKING DRAFT SEQUE... 46 0.40 1
(AC179599) Strongylocentrotus purpuratus clone R3-1029E15, W... 46 0.40 1
(EJ683950) 1092955160480 Global-Ocean-Sampling_GS-30-02-01-1... 46 0.40 1
(EJ584527) 1092961007695 Global-Ocean-Sampling_GS-29-01-01-1... 46 0.40 1
(EI942701) VUH2-89N22TR VUUBBa (VUH2) Vigna unguiculata geno... 46 0.40 1
(AJ859237) Brassica rapa subsp. pekinensis GSS, clone KBrH05... 46 0.40 1
(CZ762861) OC__Ba0117B09.r OC__Ba Oryza coarctata genomic cl... 46 0.40 1
(CC579906) CH240_374A22.TARBAC13P2 CHORI-240 Bos taurus geno... 46 0.40 1
(AP005096) Oryza sativa Japonica Group genomic DNA, chromoso... 40 0.41 2
(AP004618) Oryza sativa Japonica Group genomic DNA, chromoso... 40 0.54 2
(EJ929788) 1093018800814 Global-Ocean-Sampling_GS-30-02-01-1... 42 0.69 2
(EJ838023) 1093017812439 Global-Ocean-Sampling_GS-30-02-01-1... 42 0.80 2
(AC097971) Rattus norvegicus clone CH230-141J12, WORKING DRA... 34 0.83 2
(AC131395) Rattus norvegicus clone CH230-106K15, *** SEQUENC... 34 0.83 2
(AC183689) Pan troglodytes BAC clone CH251-3C11 from chromos... 34 0.85 2
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 34 0.92 2
(CF182013) ISO5F8F Iso cDNA Isotricha sp. BBF-2003 cDNA simi... 32 1.1 2
(AU072701) Dictyostelium discoideum slug cDNA, clone SSA565. 34 1.2 2
(AC171532) Medicago truncatula chromosome 7 BAC clone mth2-5... 36 1.2 3
(AY293579) Francisella tularensis subsp. novicida strain U11... 40 1.4 2
(CU694811) Zebrafish DNA sequence from clone CH73-367C9 in l... 44 1.6 1
(CR847905) Zebrafish DNA sequence from clone CH211-244M18 in... 44 1.6 1
(BV235793) S234P6526FH9.T0 EnglishShepherd Canis familiaris ... 44 1.6 1
(AC147475) Mus musculus BAC clone RP23-161B8 from 1, complet... 44 1.6 1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 44 1.6 1
(EF625817) Carica papaya clone MSY BAC PH41F24 complete sequ... 44 1.6 1
(AY306789) Neodicladiella pendula isolate SB711 tRNA-Leu (tr... 44 1.6 1
(AY306746) Floribundaria sparsa var. pilifer isolate SB727 t... 44 1.6 1
(AY306744) Floribundaria aurea isolate SB758 tRNA-Leu (trnL)... 44 1.6 1
(AY306716) Chrysocladium flammeum isolate SB1333 tRNA-Leu (t... 44 1.6 1
(AY306700) Barbellopsis trichophora isolate SB1327 tRNA-Leu ... 44 1.6 1
(AY306699) Barbella pendula isolate SB704 tRNA-Leu (trnL) an... 44 1.6 1
(AY184790) Eurhynchium pumilum chloroplast tRNA-Leu (trnL) g... 44 1.6 1
(AY044075) Neodicladiella pendula tRNA-Leu (trnL) gene, part... 44 1.6 1
(AY044071) Barbella flagellifera tRNA-Leu (trnL) gene, parti... 44 1.6 1
(AY044062) Barbellopsis trichophora tRNA-Leu (trnL) gene, pa... 44 1.6 1
(AP010470) Lotus japonicus genomic DNA, chromosome 6, clone:... 44 1.6 1
(AM462762) Vitis vinifera contig VV78X249650.8, whole genome... 44 1.6 1
(AM462578) Vitis vinifera contig VV78X214041.4, whole genome... 44 1.6 1
(AM453480) Vitis vinifera contig VV78X051967.5, whole genome... 44 1.6 1
(AF509547) Barbella flagellifera tRNA-Leu (trnL) gene, parti... 44 1.6 1
(AF509538) Neodicladiella pendula tRNA-Leu (trnL) gene, part... 44 1.6 1
(AF397848) Neodicladiella pendula tRNA-Leu (trnL) gene, part... 44 1.6 1
(AF397822) Sinskea phaea tRNA-Leu (trnL) gene, partial seque... 44 1.6 1
(AF397778) Trachycladiella aurea tRNA-Leu (trnL) gene, parti... 44 1.6 1
(AC202357) Medicago truncatula clone mth2-52g1, complete seq... 44 1.6 1
(AC174370) Medicago truncatula chromosome 8 clone mth2-50f20... 44 1.6 1
(DD010736) Diagnosis of known genetic Parameters within the ... 44 1.6 1
(AX344573) Sequence 24 from Patent WO0200932. 44 1.6 1
(GP221762) Sequence 11593 from patent US 7491813. 44 1.6 1
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 44 1.6 1
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 44 1.6 1
(AC152793) Bos taurus clone CH240-14J16, *** SEQUENCING IN P... 44 1.6 1
(AC126197) Rattus norvegicus clone CH230-145E6, WORKING DRAF... 44 1.6 1
(AC101382) Mus musculus clone RP23-118H8, LOW-PASS SEQUENCE ... 44 1.6 1
(AC230303) Bos taurus clone CH240-513H18, WORKING DRAFT SEQU... 44 1.6 1
(AC223870) Bos taurus clone CH240-456A2, WORKING DRAFT SEQUE... 44 1.6 1
(AC214663) Zea mays chromosome 9 clone CH201-87O8; ZMMBBc008... 44 1.6 1
(AC211256) Zea mays chromosome 5 clone CH201-388O14; ZMMBBc0... 44 1.6 1
(AC202018) Zea mays chromosome 6 clone CH201-38D5; ZMMBBc003... 44 1.6 1
(AC193668) Zea mays chromosome 9 clone CH201-461K19; ZMMBBc0... 44 1.6 1
(AC187824) Zea mays chromosome 6 clone CH201-154L12; ZMMBBc0... 44 1.6 1
(AC187776) Zea mays chromosome 8 clone CH201-12I21; ZMMBBc00... 44 1.6 1
(AZ319107) 1M0038L02R Mouse 10kb plasmid UUGC1M library Mus ... 44 1.6 1
(EJ883351) 1093018406303 Global-Ocean-Sampling_GS-30-02-01-1... 44 1.6 1
(EJ808797) 1093017477123 Global-Ocean-Sampling_GS-30-02-01-1... 44 1.6 1
(AM639787) Entamoeba dispar GSS, clone dispar69d02.q1k. 44 1.6 1
(EJ459346) 1093018427739 Global-Ocean-Sampling_GS-28-01-01-1... 44 1.6 1
(EI186609) ZMMBBc0087O08.rq ZMMBB_VAL Zea mays genomic clone... 44 1.6 1
(ED287485) AUAC-aam00e04.b1 Ascaris suum whole genome shotgu... 44 1.6 1
(DX433248) BE1074_N20_R IASMA L1 HindIII BAC library Vitis v... 44 1.6 1
(DU234107) 1098574026029 CHORI-243 Ovis aries genomic clone ... 44 1.6 1
(CW007337) ZMMBLa0008O17.f ZMMBLa Zea mays genomic clone ZMM... 44 1.6 1
(CU838323) A BAC library has been constructed from PN40024 g... 44 1.6 1
(CT525490) A BAC library has been constructed from cultivar ... 44 1.6 1
(CG359117) OG5BU39TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 1.6 1
(CE306781) tigr-gss-dog-17000360545049 Dog Library Canis lup... 44 1.6 1
(CC618727) OGUAB65TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 1.6 1
(CC618723) OGUAB65TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 1.6 1
(BZ712239) OGEAE93TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 1.6 1
(BZ682226) PUBCT14TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 1.6 1
(BZ550792) pacs1-60_2831.x1 pacs1-60 Pseudomonas aeruginosa ... 44 1.6 1
(BZ369243) Cot100.1.2.H19 Maize Cot100 library Zea mays geno... 44 1.6 1
(EL492757) A01_PFBAMHI-M-T7-PLATE4A.AB1 Blood stage Plasmodi... 44 1.6 1
(EC822274) SME00007580 esmbsro2 Sawyeria marylandensis cDNA,... 44 1.6 1
(EC819793) SME00006933 esmbsro2 Sawyeria marylandensis cDNA,... 44 1.6 1
(EC191928) SSE00001083 Streblomastix strix Non-normalized St... 44 1.6 1
(DT608114) ACAG-aaa44h10.g1 Hydra_EST_UCI-9 Hydra magnipapil... 44 1.6 1
(CX152187) 1292676 NCCCWA 03RT Oncorhynchus mykiss cDNA clon... 44 1.6 1
(CX146055) 1285908 NCCCWA 03RT Oncorhynchus mykiss cDNA clon... 44 1.6 1
(CN774718) tae73b08.y1 Hydra EST Darmstadt I Hydra magnipapi... 44 1.6 1
(BM439300) GIT0000114 Root-induced cDNA library from Glomus ... 44 1.6 1
(EY384551) CAXA5209.fwd CAXA Helobdella robusta Subtracted L... 44 1.6 1
(CP001581) Clostridium botulinum A2 str. Kyoto, complete gen... 44 1.6 1
(CP000728) Clostridium botulinum F str. Langeland, complete ... 44 1.6 1
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 44 1.6 1
(AM474615) Vitis vinifera contig VV78X077156.4, whole genome... 38 2.2 2
(AC173601) Bos taurus clone CH240-280G24, WORKING DRAFT SEQU... 40 2.2 2
(EH009844) USDA-FP_183001 Lysiphlebus testaceipes adult whol... 36 2.5 2
(EK225635) 1095460157933 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.1 2
(AC162764) Rhinolophus ferrumequinum clone VMRC7-116K10, WOR... 34 3.1 2
(AC163262) Rhinolophus ferrumequinum clone VMRC7-144M20, WOR... 34 3.1 2
(EJ330430) 1092963432034 Global-Ocean-Sampling_GS-28-01-01-1... 40 3.4 2
(DX553695) GH_MBb0083I23f GH_MBb Gossypium hirsutum genomic ... 36 3.8 2
(DN576739) 93892247 Sea Urchin primary mesenchyme cell cDNA ... 32 4.1 2
(AC007825) Drosophila melanogaster, chromosome 3R, region 96... 36 5.7 3
(CU928054) Brassica rapa subsp. pekinensis clone KBrH132N04,... 42 6.1 2
(CU469519) Zebrafish DNA sequence from clone CH211-71N6 in l... 42 6.2 1
(CT573079) Zebrafish DNA sequence from clone CH73-149G16 in ... 42 6.2 1
(BX901914) Zebrafish DNA sequence from clone DKEY-27F18 in l... 42 6.2 1
(BX004862) Zebrafish DNA sequence from clone DKEY-200M9 in l... 42 6.2 1
(EF067326) Cotesia plutellae polydnavirus segment S36, compl... 42 6.2 1
(AC158966) Mus musculus chromosome 1, clone RP23-382I8, comp... 42 6.2 1
(AC139054) Mus musculus chromosome 15, clone RP23-14D20, com... 42 6.2 1
(AC125219) Mus musculus BAC clone RP23-67O7 from 1, complete... 42 6.2 1
(AC122140) Mus musculus BAC clone RP24-270F2 from 17, comple... 42 6.2 1
(AC114916) Mus musculus BAC clone RP23-68E10 from 15, comple... 42 6.2 1
(AC109279) Mus musculus chromosome 1, clone RP23-333O12, com... 42 6.2 1
(CT485994) RP43-077B08, complete sequence. 42 6.2 1
(CT485605) RP43-010N04, complete sequence. 42 6.2 1
(AC198463) Pan troglodytes BAC clone CH251-352B8 from chromo... 42 6.2 1
(AC188172) Pan troglodytes BAC clone CH251-694H11 from chrom... 42 6.2 1
(FJ899562) Pinus thunbergii chloroplast, partial genome. 42 6.2 1
(D17510) Pinus thunbergii chloroplast DNA, complete genome. 42 6.2 1
(CT025840) Medicago truncatula chromosome 5 clone mth4-39c23... 42 6.2 1
(AM471025) Vitis vinifera contig VV78X121128.24, whole genom... 42 6.2 1
(AM454394) Vitis vinifera contig VV78X133763.7, whole genome... 42 6.2 1
(AM443575) Vitis vinifera contig VV78X228784.5, whole genome... 42 6.2 1
(AM441422) Vitis vinifera contig VV78X086521.4, whole genome... 42 6.2 1
(AM434998) Vitis vinifera contig VV79X009893.2, whole genome... 42 6.2 1
(AM426970) Vitis vinifera contig VV78X019375.5, whole genome... 42 6.2 1
(FB701774) Sequence 1 from Patent WO2007126975. 42 6.2 1
(DL005681) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 42 6.2 1
(CS459606) Sequence 87 from Patent WO2006117596. 42 6.2 1
(GC702051) Sequence 17296 from patent US 6812339. 42 6.2 1
(GC696729) Sequence 11973 from patent US 6812339. 42 6.2 1
(AC191165) Canis Familiaris chromosome 14, clone XX-78F2, co... 42 6.2 1
(AL844505) Plasmodium falciparum 3D7 chromosome 6. 42 6.2 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 42 6.2 1
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 42 6.2 1
(AC023674) Drosophila melanogaster 3L BAC RP98-11E6 (Roswell... 42 6.2 1
(AF017104) Homo sapiens chromosome 7 common fragile site, co... 42 6.2 1
(AC114741) Homo sapiens BAC clone RP11-62N21 from 4, complet... 42 6.2 1
(AC016831) Homo sapiens clone RP11-36B6 from 7q31, complete ... 42 6.2 1
(AC012490) Homo sapiens BAC clone RP11-164G2 from 7, complet... 42 6.2 1
(AC011747) Homo sapiens BAC clone RP11-434B12 from 2, comple... 42 6.2 1
(AC147043) Pan troglodytes chromosome UNK clone RP43-124F21,... 42 6.2 1
(AC140000) Rattus norvegicus clone CH230-122B23, WORKING DRA... 42 6.2 1
(AC139890) Rattus norvegicus clone CH230-113J5, WORKING DRAF... 42 6.2 1
(AC117859) Rattus norvegicus clone CH230-345L6, *** SEQUENCI... 42 6.2 1
(AC115199) Rattus norvegicus clone CH230-391K18, *** SEQUENC... 42 6.2 1
(AC111926) Rattus norvegicus clone CH230-103H18, *** SEQUENC... 42 6.2 1
(AC111429) Rattus norvegicus clone CH230-146A22, WORKING DRA... 42 6.2 1
(AC099447) Rattus norvegicus clone CH230-203H4, WORKING DRAF... 42 6.2 1
(AC099150) Rattus norvegicus clone CH230-64M12, WORKING DRAF... 42 6.2 1
(CU694871) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.2 1
(CU498984) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.2 1
(CR774191) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 6.2 1
(CR388048) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 6.2 1
(AC232481) Brassica rapa subsp. pekinensis clone KBrB037E22,... 42 6.2 1
(AC213631) Zea mays chromosome 8 clone CH201-464M7; ZMMBBc04... 42 6.2 1
(AC201423) Strongylocentrotus purpuratus clone R3-21E21, WOR... 42 6.2 1
(AC193267) Cavia porcellus clone CH234-253D11, WORKING DRAFT... 42 6.2 1
(AC191903) Sorex araneus clone SA_Ba-268O21, WORKING DRAFT S... 42 6.2 1
(AC191497) Sorex araneus clone SA_Ba-307C20, WORKING DRAFT S... 42 6.2 1
(AC191390) Zea mays chromosome 7 clone ZMMBBb-156I15; ZMMBBb... 42 6.2 1
(AC188351) Atelerix albiventris clone LB4-380N14, WORKING DR... 42 6.2 1
(AC186706) Atelerix albiventris clone LB4-181E18, WORKING DR... 42 6.2 1
(AC184560) Strongylocentrotus purpuratus clone R3-62M6, WORK... 42 6.2 1
(AC181959) Strongylocentrotus purpuratus clone R3-1003E20, W... 42 6.2 1
(AC181789) Strongylocentrotus purpuratus clone R3-1029L3, WO... 42 6.2 1
(AC180304) Strongylocentrotus purpuratus clone R3-3119N03, W... 42 6.2 1
(AC174122) Strongylocentrotus purpuratus clone R3-3012A21, W... 42 6.2 1
(AC171766) Atelerix albiventris clone LB4-510B9, WORKING DRA... 42 6.2 1
(AC171765) Atelerix albiventris clone LB4-501D9, WORKING DRA... 42 6.2 1
(AC021669) Homo sapiens chromosome 2 clone RP11-129F9 map 2,... 42 6.2 1
(AC013219) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 42 6.2 1
(AC010758) Homo sapiens chromosome 2 clone RP11-1B18 map 2, ... 42 6.2 1
(FH843293) OSB_1260001xb08r1.ab1 OSB_1260 Nicotiana tabacum ... 42 6.2 1
(FH746148) CHO_OF5014xp23r1.ab1 CHO_OF5 Nicotiana tabacum ge... 42 6.2 1
(FH730832) CHO_OF5108xg04r1.ab1 CHO_OF5 Nicotiana tabacum ge... 42 6.2 1
(FH685984) CHO_OF5081xa12f1.ab1 CHO_OF5 Nicotiana tabacum ge... 42 6.2 1
(FH229944) CHO_OF3404xf07r1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 6.2 1
(FH229859) CHO_OF3404xf07f1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 6.2 1
(FH088970) CHO_OF3034xc14r1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 6.2 1
(ET872500) CHO_OF242xn16r1.ab1 CHO_OF Nicotiana tabacum geno... 42 6.2 1
(EK425200) 1095516013735 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK173710) 1095458087531 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK173698) 1095458087518 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EJ935577) 1093018835917 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.2 1
(EJ851857) 1093017893955 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.2 1
(EJ310308) 1095390197445 Global-Ocean-Sampling_GS-27-01-01-1... 42 6.2 1
(EJ041791) 1095454097004 Global-Ocean-Sampling_GS-26-01-01-1... 42 6.2 1
(EJ034610) 1095454065485 Global-Ocean-Sampling_GS-26-01-01-1... 42 6.2 1
(DX466149) Cpl08013 Papaya Genomic DNA BAC Library Carica pa... 42 6.2 1
(DX465299) Cpl07141 Papaya Genomic DNA BAC Library Carica pa... 42 6.2 1
(CZ173835) MIAA-27B01b.g1 Meloidogyne incognita BAC end sequ... 42 6.2 1
(CW449394) fsbb001f183i09k0 Sorghum methylation filtered lib... 42 6.2 1
(CU851812) A BAC library has been constructed from PN40024 g... 42 6.2 1
(CU846544) A BAC library has been constructed from PN40024 g... 42 6.2 1
(CL354110) RPCI44_405I24.r RPCI-44 Sus scrofa genomic clone ... 42 6.2 1
(BZ068435) ljt34h11.b1 B.oleracea002 Brassica oleracea genom... 42 6.2 1
(BH658903) BOMGQ78TF BO_2_3_KB Brassica oleracea genomic clo... 42 6.2 1
(EL503929) A12_2086_302.AB1 Blood stage Plasmodium falciparu... 42 6.2 1
(EL501537) 079_PFLAB1-M-P23B.AB1 Blood stage Plasmodium falc... 42 6.2 1
(EC821930) SME00010019 esmbsro2 Sawyeria marylandensis cDNA,... 42 6.2 1
(EC817664) SME00004982 esmbsro2 Sawyeria marylandensis cDNA,... 42 6.2 1
(DY677073) TT1A235TV Tetrahymena thermophila EST library str... 42 6.2 1
(DT615954) ACAH-aab13c06.g1 Hydra_EST_UCI-10 Hydra magnipapi... 42 6.2 1
(AU263255) Dictyostelium discoideum vegetative cDNA clone:VS... 42 6.2 1
(DB740513) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.2 1
(CX581262) TTE00028373 Amplicon Express - Conjugative Form T... 42 6.2 1
(CX579560) TTE00021209 Amplicon Express - Conjugative Form T... 42 6.2 1
(CB933423) ri29f12.y1 Meloidogyne chitwoodi egg pAMP1 v1 Mel... 42 6.2 1
(BU025048) QHF7G08.yg.ab1 QH_EFGHJ sunflower RHA280 Helianth... 42 6.2 1
(BM274026) PfESToaa62g11.y1 Plasmodium falciparum 3D7 gameto... 42 6.2 1
(BM170499) EST573022 PyBS Plasmodium yoelii yoelii cDNA clon... 42 6.2 1
(BM162832) EST565355 PyBS Plasmodium yoelii yoelii cDNA clon... 42 6.2 1
(BJ978815) Reticulitermes speratus gut symbiotic protist cDN... 42 6.2 1
(BI814303) PfESToaa12h09.y2 Plasmodium falciparum 3D7 asexua... 42 6.2 1
(FF576024) TTEDV94THB Tetrahymena thermophila conjugation cD... 42 6.2 1
(FF571650) TTEBO77THB Tetrahymena thermophila conjugation cD... 42 6.2 1
(EY354343) CAWZ3022.fwd CAWZ Helobdella robusta Primary Late... 42 6.2 1
(EY344817) CAWZ13502.fwd CAWZ Helobdella robusta Primary Lat... 42 6.2 1
(EY334333) CAWY6293.fwd CAWY Helobdella robusta Subtracted E... 42 6.2 1
(EY332804) CAWY5181.fwd CAWY Helobdella robusta Subtracted E... 42 6.2 1
(EY323569) CAWX9075.fwd CAWX Helobdella robusta Primary Earl... 42 6.2 1
(EY322707) CAWX8595.fwd CAWX Helobdella robusta Primary Earl... 42 6.2 1
(EY319595) CAWX6966.fwd CAWX Helobdella robusta Primary Earl... 42 6.2 1
(EY317241) CAWX27456.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY316932) CAWX27288.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY316800) CAWX26828.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY315879) CAWX26303.rev CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY313647) CAWX25071.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY313199) CAWX24823.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY310972) CAWX23215.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY309966) CAWX21887.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY301181) CAWX15436.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY301136) CAWX15412.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY300635) CAWX15127.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY299889) CAWX14718.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY299784) CAWX14659.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY299748) CAWX14639.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EY292025) CAWX10327.fwd CAWX Helobdella robusta Primary Ear... 42 6.2 1
(EX623100) 255420142 Pea aphid whole body normalized full le... 42 6.2 1
(EV830036) TT1D087TV Tetrahymena thermophila SB210 cDNA libr... 42 6.2 1
(AP009510) Uncultured Termite group 1 bacterium phylotype Rs... 42 6.2 1
(CP001548) Borrelia burgdorferi 29805 plasmid 29805_lp38, co... 42 6.2 1
(CP001539) Borrelia burgdorferi 118a plasmid 118a_lp38, comp... 42 6.2 1
(CP001476) Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_lp... 42 6.2 1
(CP001458) Borrelia burgdorferi WI91-23 plasmid WI91-23_lp38... 42 6.2 1
(CP001440) Borrelia valaisiana VS116 plasmid VS116_lp28-3, c... 42 6.2 1
(CP001419) Borrelia burgdorferi 64b plasmid 64b_lp38, comple... 42 6.2 1
(CP001377) Borrelia burgdorferi 72a plasmid 72a_lp38, comple... 42 6.2 1
(CP001315) Borrelia garinii Far04 plasmid Far04_lp17, comple... 42 6.2 1
(CP001309) Borrelia garinii PBr plasmid PBr_lp17, complete s... 42 6.2 1
(CP001267) Borrelia burgdorferi 156a plasmid 156a_lp38, comp... 42 6.2 1
(CP001185) Thermosipho africanus TCF52B, complete genome. 42 6.2 1
(CP000746) Actinobacillus succinogenes 130Z, complete genome. 42 6.2 1
(CP000673) Clostridium kluyveri DSM 555, complete genome. 42 6.2 1
(CP000395) Borrelia afzelii PKo, complete genome. 42 6.2 1
(CP000394) Granulibacter bethesdensis CGDNIH1, complete genome. 42 6.2 1
(BX248583) Blochmannia floridanus complete genome. 42 6.2 1
(AP009049) Clostridium kluyveri NBRC 12016 DNA, complete gen... 42 6.2 1
(AM942759) Proteus mirabilis strain HI4320, complete genome. 42 6.2 1
(AF250389) Carsonella ruddii elongation factor Tu (tufA) gen... 42 6.2 1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 42 6.2 1
(AE000787) Borrelia burgdorferi B31 plasmid lp38, complete s... 42 6.2 1
(AC023597) Homo sapiens chromosome 3 clone RP11-136H24, WORK... 34 6.7 3
(AC032000) Homo sapiens clone RP11-598I8, WORKING DRAFT SEQU... 36 7.2 2
(AC091564) Homo sapiens chromosome 11, clone RP11-732A19, co... 36 7.5 3
(CR762391) Zebrafish DNA sequence from clone DKEYP-52F4 in l... 38 7.8 2
(CF181888) ISO2E6R Iso cDNA Isotricha sp. BBF-2003 cDNA simi... 32 8.1 2
(GH269604) LE_MX1_57E04_SP6 Skate Multiple Tissues, Normaliz... 34 8.5 2
(AC187847) Zea mays chromosome UNKNOWN clone ZMMBBb-606N10; ... 34 8.8 3
(FF332607) 280450878 Pea aphid whole body normalized full le... 38 9.2 2
(EH016693) USDA-FP_189168 Lysiphlebus testaceipes adult whol... 28 9.3 3
(BQ426514) CgHem 012-I-23 C. gigas Hemocytes Lambda Zap Expr... 38 9.7 2
(EC823759) SME00003800 esmbsro2 Sawyeria marylandensis cDNA,... 32 9.7 2

>(AU073832) Dictyostelium discoideum slug cDNA, clone SSI486.
Length = 169

Score = 186 bits (94), Expect = 2e-43
Identities = 94/94 (100%)
Strand = Plus / Plus


Query: 1 caacaactctattaatagccacaacataaattttactgggggtgatggcgacataccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacaactctattaatagccacaacataaattttactgggggtgatggcgacataccaaa 60


Query: 61 taatgataatttaaataattttgaaaataatttc 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 taatgataatttaaataattttgaaaataatttc 94

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 155,680,098
Number of extensions: 11124202
Number of successful extensions: 3582938
Number of sequences better than 10.0: 326
Length of query: 168
Length of database: 104,622,809,269
Length adjustment: 22
Effective length of query: 146
Effective length of database: 102,296,446,593
Effective search space: 14935281202578
Effective search space used: 14935281202578
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05453-1 (Contig-U05453-1Q) /CSM_Contig/Contig-U05453-1Q.Seq.d
(168 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 114,752,077
Number of extensions: 527063
Number of successful extensions: 869
Number of sequences better than 10.0: 0
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 0
Length of query: 56
Length of database: 1,061,185,681
Length adjustment: 29
Effective length of query: 27
Effective length of database: 966,400,689
Effective search space: 26092818603
Effective search space used: 26092818603
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

PSORT

psg: 0.73 gvh: 0.26 alm: 0.69 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial

>> prediction for Contig-U05453-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0