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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05449-1
Contig ID Contig-U05449-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05449-1 (Contig-U05449-1Q) /CSM_Contig/Contig-U05449-1Q.Seq.d
GGAATTTTTTTTGAAGTAGATGAAGAAACAATTTTAAATGGGGTTCCAAT
TGCTGATAATGCCGCCCAATCACTTAATGAAGCAATTGAAATGGCAAAAG
GAAAGGCAAAAGGATTTGGATTTGGATTCTTTTAAATAATATAAAATATA
AAATATAGATAATTTTTTTTTTTTTTTTTTCCCCAAACTTAATTATTTTT
TTCCAAAAAAAAGATAGAAATTTTAAAAAGATCAATTTCCAAAGAATGTA
AATAAATAAATAAATATTAAAAATTGTATATAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
Gap no gap
Contig length 316
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2436021
End point 2436304
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05449
List of clone(s) 

est1=SSI422Z,1,317
Translated Amino Acid sequence 
GIFFEVDEETILNGVPIADNAAQSLNEAIEMAKGKAKGFGFGFF*ii*nikyr*ffffff
pqt*lffskkkieilkrsiskeck*inky*klyikkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
GIFFEVDEETILNGVPIADNAAQSLNEAIEMAKGKAKGFGFGFF*ii*nikyr*ffffff
pqt*lffskkkieilkrsiskeck*inky*klyikkkkkkkkkkk


Frame B:
efflk*mkkqf*mgfqllimppnhlmkqlkwqkerqkdldldsfk*yki*nidnffffff
pklnyffpkkr*kf*kdqfpknvnk*iniknci*kkkkkkkkkkk


Frame C:
nff*sr*rnnfkwgsnc**crpit**sn*ngkrkgkriwiwillnnikyki*iifffffs
pnliiffqkkdrnfkkinfqrm*ink*ilkivykkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05449-1 (Contig-U05449-1Q)
/CSM_Contig/Contig-U05449-1Q.Seq.d
         (316 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05449-1 (Contig-U05449-1Q) /CSM_Contig/Conti...   297  4e-81
Contig-U11298-1 (Contig-U11298-1Q) /CSM_Contig/Conti...    42  4e-04
Contig-U10389-1 (Contig-U10389-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U09429-1 (Contig-U09429-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U01509-1 (Contig-U01509-1Q) /CSM_Contig/Conti...    38  0.005
Contig-U12816-1 (Contig-U12816-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U12673-1 (Contig-U12673-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U12240-1 (Contig-U12240-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U09721-1 (Contig-U09721-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U09367-1 (Contig-U09367-1Q) /CSM_Contig/Conti...    36  0.022

>Contig-U05449-1 (Contig-U05449-1Q) /CSM_Contig/Contig-U05449-1Q.Seq.d
          Length = 316

 Score =  297 bits (150), Expect = 4e-81
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                       
Query: 13  gaagtagatgaagaaacaattttaaatggggttccaattgctgataatgccgcccaatca 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13  gaagtagatgaagaaacaattttaaatggggttccaattgctgataatgccgcccaatca 72

                                                                       
Query: 73  cttaatgaagcaattgaaatggcaaaaggaaaggcaaaaggatttggatttggattcttt 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  cttaatgaagcaattgaaatggcaaaaggaaaggcaaaaggatttggatttggattcttt 132

                                         
Query: 133 taaataatataaaatataaaatatagataa 162
           ||||||||||||||||||||||||||||||
Sbjct: 133 taaataatataaaatataaaatatagataa 162


 Score = 48.1 bits (24), Expect = 6e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 181 ccccaaacttaattatttttttcc 204
           ||||||||||||||||||||||||
Sbjct: 181 ccccaaacttaattatttttttcc 204


>Contig-U11298-1 (Contig-U11298-1Q) /CSM_Contig/Contig-U11298-1Q.Seq.d
          Length = 2244

 Score = 42.1 bits (21), Expect = 4e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 130 ttttaaataatataaaatataaaat 154
           |||||||||||| ||||||||||||
Sbjct: 7   ttttaaataataaaaaatataaaat 31


>Contig-U10389-1 (Contig-U10389-1Q) /CSM_Contig/Contig-U10389-1Q.Seq.d
          Length = 1028

 Score = 40.1 bits (20), Expect = 0.001
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  aatataaaatataaaatata 157
            ||||||||||||||||||||
Sbjct: 1007 aatataaaatataaaatata 1026


 Score = 34.2 bits (17), Expect = 0.085
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 141  ataaaatataaaatata 157
            |||||||||||||||||
Sbjct: 1003 ataaaatataaaatata 1019


 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 138  aatataaaatataaa 152
            |||||||||||||||
Sbjct: 1014 aatataaaatataaa 1028


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5551
Number of Sequences: 6905
Number of extensions: 5551
Number of successful extensions: 764
Number of sequences better than 10.0: 311
length of query: 316
length of database: 5,674,871
effective HSP length: 15
effective length of query: 301
effective length of database: 5,571,296
effective search space: 1676960096
effective search space used: 1676960096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.21
Homology vs DNA 
Query= Contig-U05449-1 (Contig-U05449-1Q) /CSM_Contig/Contig-U05449-1Q.Seq.d
         (316 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90426) Dictyostelium discoideum slug cDNA, clone SSI422.        297   2e-79  2
(CR284513) Oryza sativa  cDNA clone:y731d06p3.                     52   0.013  1
(AC199289) Spermophilus tridecemlineatus clone VMRC20-392I14...    50   0.041  2
(AC154568) Mus musculus BAC clone RP23-246L11 from chromosom...    50   0.051  1
(AL844507) Plasmodium falciparum 3D7 chromosome 8.                 50   0.051  1
(AC198854) Spermophilus tridecemlineatus clone VMRC20-614P8,...    50   0.051  1
(AZ137022) SP_0173_B1_F11_T7A Strongylocentrotus purpuratus,...    50   0.051  1
(ER792838) PPTHA01TF Solanum tuberosum RHPOTKEY BAC ends Sol...    50   0.051  1
(CP001407) Bacillus cereus 03BB102, complete genome.               50   0.051  1
(CP001177) Bacillus cereus AH187, complete genome.                 50   0.051  1
(CP000485) Bacillus thuringiensis str. Al Hakam, complete ge...    50   0.051  1
(CP000227) Bacillus cereus Q1, complete genome.                    50   0.051  1
(AE017194) Bacillus cereus ATCC 10987, complete genome.            50   0.051  1
(ET882215) CHO_OF074xg18r1.ab1 CHO_OF Nicotiana tabacum geno...    38   0.057  2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    44   0.087  3
(CP001081) Clostridium botulinum Ba4 str. 657 plasmid pCLJ, ...    46   0.16   3
(BH926269) odi58c02.g1 B.oleracea002 Brassica oleracea genom...    44   0.19   2
(CT573001) Zebrafish DNA sequence from clone CH211-180A12 in...    48   0.20   1
(BV076248) S208P6492FG8.T0 129S1/SvImJ Mus musculus STS geno...    48   0.20   1
(AC122468) Mus musculus BAC clone RP24-315E7 from chromosome...    48   0.20   1
(CU302345) Medicago truncatula chromosome 5 clone mth2-106f5...    48   0.20   1
(AM992918) Debaryomyces hansenii var. hansenii 26S rRNA (par...    48   0.20   1
(AM480579) Vitis vinifera contig VV78X203903.3, whole genome...    48   0.20   1
(AC189369) Brassica rapa subsp. pekinensis clone KBrB047D06,...    48   0.20   1
(AF467678) Acidiella issikii 16S ribosomal RNA gene, partial...    48   0.20   1
(AF467677) Acidiella circumvaga isolate AcidCirc-2 16S ribos...    48   0.20   1
(AF467676) Acidiella circumvaga isolate AcidCirc-1 16S ribos...    48   0.20   1
(AC093217) Homo sapiens chromosome 5 clone CTD-2120M21, comp...    48   0.20   1
(AC018422) Homo sapiens, clone RP11-19G4, complete sequence.       48   0.20   1
(AC136591) Homo sapiens chromosome 16 clone CTD-2547F9, WORK...    48   0.20   1
(AC026209) Homo sapiens chromosome 3 clone RP11-665L14 map 3...    48   0.20   1
(AC212881) Zea mays chromosome 2 clone CH201-124B20; ZMMBBc0...    48   0.20   1
(AC189535) Brassica rapa subsp. pekinensis clone KBrH001M22,...    48   0.20   1
(AC172868) Brassica rapa subsp. campestris clone KBrH003F06,...    48   0.20   1
(EK576006) 1095521184457 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.20   1
(CZ501688) GMW2-9D16a.g1 GMW2 Glycine max genomic, genomic s...    48   0.20   1
(CU755795) A BAC library has been constructed from PN40024 g...    48   0.20   1
(CE394511) tigr-gss-dog-17000334490886 Dog Library Canis lup...    48   0.20   1
(GO302985) AHSB508.rev AHSB Teleopsis dalmanni Late larval e...    48   0.20   1
(EF015625) Borrelia bissettii strain SCGT2 rrf-rrl intergeni...    48   0.20   1
(AF221675) Borrelia sp. MI-9 rrf-rrl intergenic spacer, part...    48   0.20   1
(AF221673) Borrelia sp. SCW-30h rrf-rrl intergenic spacer, p...    48   0.20   1
(AF221672) Borrelia sp. FD-1 rrf-rrl intergenic spacer, part...    48   0.20   1
(AC006412) Homo sapiens, *** SEQUENCING IN PROGRESS ***, 3 u...    40   0.21   3
(AM485821) Vitis vinifera contig VV78X244528.7, whole genome...    44   0.29   2
(DB776831) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.54   2
(AC023715) Drosophila melanogaster X BAC RP98-17H6 (Roswell ...    44   0.55   2
(CE497860) tigr-gss-dog-17000327314338 Dog Library Canis lup...    34   0.60   2
(AC212312) Solanum lycopersicum cv. Heinz 1706, chromosome 5...    42   0.63   3
(BH990278) oei21e05.b1 B.oleracea002 Brassica oleracea genom...    40   0.73   2
(CT573787) Zebrafish DNA sequence from clone CH73-126O18 in ...    46   0.80   1
(CR925728) Zebrafish DNA sequence from clone DKEY-96G2 in li...    46   0.80   1
(BK005671) TPA_exp: Entamoeba histolytica tRNA-encoding arra...    46   0.80   1
(CT009630) Mouse DNA sequence from clone RP23-12B13 on chrom...    46   0.80   1
(BX640400) Mouse DNA sequence from clone RP23-294N21 on chro...    46   0.80   1
(AL845160) Mouse DNA sequence from clone RP23-303O15 on chro...    46   0.80   1
(AC164554) Mus musculus BAC clone RP23-351O14 from chromosom...    46   0.80   1
(AC188306) Pongo abelii BAC clone CH276-71H12 from chromosom...    46   0.80   1
(FM995165) Candida castellii complete mitochondrial genome, ...    46   0.80   1
(CR955004) Medicago truncatula chromosome 5 clone mte1-9e19,...    46   0.80   1
(CR932963) Medicago truncatula chromosome 5 clone mth2-115p2...    46   0.80   1
(AP007154) Aspergillus oryzae RIB40 genomic DNA, SC001.            46   0.80   1
(AP006663) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   0.80   1
(AM464504) Vitis vinifera contig VV78X106021.6, whole genome...    46   0.80   1
(AM446939) Vitis vinifera contig VV78X227684.18, whole genom...    46   0.80   1
(AM427698) Vitis vinifera contig VV78X033427.2, whole genome...    46   0.80   1
(AC146559) Medicago truncatula clone mth2-12e5, complete seq...    46   0.80   1
(EA333170) Sequence 5662 from patent US 7306913.                   46   0.80   1
(GN008391) Sequence 832 from Patent EP2014669.                     46   0.80   1
(FN357324) Schistosoma mansoni genome sequence supercontig S...    46   0.80   1
(DQ471401) Xanthaciura tetraspina 16S ribosomal RNA gene, pa...    46   0.80   1
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         46   0.80   1
(AL132987) Human chromosome 14 DNA sequence BAC R-188I13 of ...    46   0.80   1
(AF003627) Homo sapiens chromosome X multiple clones map q28...    46   0.80   1
(AC160591) Sorex araneus clone SA_Ba-191B3, WORKING DRAFT SE...    46   0.80   1
(AC136051) Rattus norvegicus clone CH230-293A4, *** SEQUENCI...    46   0.80   1
(AC124840) Rattus norvegicus clone CH230-115H24, *** SEQUENC...    46   0.80   1
(AC120842) Mus musculus clone RP23-365N19, WORKING DRAFT SEQ...    46   0.80   1
(AC111464) Rattus norvegicus clone CH230-74E2, *** SEQUENCIN...    46   0.80   1
(AC096278) Rattus norvegicus clone CH230-11L24, WORKING DRAF...    46   0.80   1
(AC095818) Rattus norvegicus clone CH230-10A2, *** SEQUENCIN...    46   0.80   1
(FP340236) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.80   1
(FP243380) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(FP085483) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.80   1
(AC234784) Solanum tuberosum chromosome 6 clone RHPOTKEY179H...    46   0.80   1
(AC234707) Solanum tuberosum chromosome 6 clone RHPOTKEY125I...    46   0.80   1
(AC232813) Solanum tuberosum chromosome 6 clone RHPOTKEY199K...    46   0.80   1
(AC225463) Medicago truncatula clone mth2-170h21, WORKING DR...    46   0.80   1
(AC195034) Colobus guereza clone CH272-428A8, WORKING DRAFT ...    46   0.80   1
(AC193716) Colobus guereza clone CH272-215P2, WORKING DRAFT ...    46   0.80   1
(AC166028) Oryctolagus cuniculus clone LB1-74P1, WORKING DRA...    46   0.80   1
(AC166014) Oryctolagus cuniculus clone LB1-155K21, WORKING D...    46   0.80   1
(BH541820) BOGCW03TR BOGC Brassica oleracea genomic clone BO...    46   0.80   1
(BH159604) ENTTF80TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH159585) ENTTF80TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH159061) ENTTF34TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH157668) ENTTH16TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH157660) ENTTH16TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH157106) ENTRA62TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH153154) ENTSC25TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH153143) ENTSC25TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH151342) ENTQD49TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH151191) ENTPF88TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH149163) ENTPG64TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH149154) ENTPG64TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH139613) ENTOB48TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH137422) ENTOS39TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH135477) ENTOL89TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH135470) ENTOL89TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH135062) ENTOB41TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH135051) ENTOB41TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH134896) ENTNB51TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH132378) ENTMY93TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(BH132370) ENTMY93TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ693492) ENTHD30TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ693484) ENTHD30TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ691302) ENTJZ25TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ691293) ENTJZ25TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ688713) ENTJY42TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ686437) ENTHX20TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ686428) ENTHX20TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ686161) ENTLH79TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ686151) ENTLH79TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ685364) ENTLE44TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ682487) ENTMI24TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ682473) ENTMI24TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ681098) ENTKX95TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ679289) ENTIA87TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ679278) ENTIA87TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ678037) ENTLQ85TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ678031) ENTLQ85TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ677215) ENTHZ28TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ670946) ENTMA41TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ670703) ENTIB36TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ670502) ENTIV48TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ551051) ENTEG55TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ551042) ENTEG55TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ550959) ENTFM63TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ550600) ENTDJ76TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ549948) ENTES67TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ549936) ENTES67TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ549881) ENTFJ57TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ547676) ENTDV86TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ547666) ENTDV86TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ547566) ENTGI87TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ545632) ENTEG42TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ545624) ENTEI96TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ545186) ENTEQ37TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ545175) ENTEQ37TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ542523) ENTFF57TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ542517) ENTFF57TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ542420) ENTEK89TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ542407) ENTEK89TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ541719) ENTFJ34TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ541541) ENTFO35TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ541174) ENTGQ65TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ541163) ENTGQ65TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ540831) ENTEC52TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ540825) ENTEC52TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ540601) ENTEI26TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ535837) ENTAC63TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ535830) ENTAC63TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ535628) ENTDJ76TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ534600) ENTBR41TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ534592) ENTBR41TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ532822) ENTCQ20TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ532577) ENTBP56TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ528866) ENTBU44TR Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(AZ528861) ENTBU44TF Entamoeba histolytica Sheared DNA Entam...    46   0.80   1
(FI817314) SIR-64B3TF Sisymbrium irio BAC library SIR Sisymb...    46   0.80   1
(FI007394) CHO_OF6900xf08r1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   0.80   1
(FH020150) CHO_OF395xm01f2.ab1 CHO_OF Nicotiana tabacum geno...    46   0.80   1
(ET075169) QM0AAB1DF07RM1 CCER1 Citrus clementina genomic cl...    46   0.80   1
(DX529620) GH_MBb0069M16r GH_MBb Gossypium hirsutum genomic ...    46   0.80   1
(DU108194) JBnY022H12R Brassica napus BAC library JBnY Brass...    46   0.80   1
(CU819951) A BAC library has been constructed from PN40024 g...    46   0.80   1
(CU267298) Equus caballus GSS, BAC clone CH241-421P24, T7 en...    46   0.80   1
(CL063471) CH216-100F21_Sp6.1 CH216 Xenopus (Silurana) tropi...    46   0.80   1
(CL042538) CH216-54L18_Sp6.1 CH216 Xenopus (Silurana) tropic...    46   0.80   1
(CL040530) CH216-50A15_RM1.1 CH216 Xenopus (Silurana) tropic...    46   0.80   1
(BZ577630) msh2_550.y2 msh Pseudomonas aeruginosa genomic cl...    46   0.80   1
(BZ255614) CH230-428B21.TV CHORI-230 Segment 2 Rattus norveg...    46   0.80   1
(EH116196) HA_MX0_90b03_SP6 Lobster Multiple Tissues, Normal...    46   0.80   1
(CV044009) ca42 Capsicum annuum L. fruit placenta specific s...    46   0.80   1
(BI946458) bEST57.5' Honeybee brain cDNA library Apis mellif...    46   0.80   1
(EX813070) CBNA3287.rev CBNA Phycomyces blakesleeanus NRRL15...    46   0.80   1
(EX811185) CBNA1854.rev CBNA Phycomyces blakesleeanus NRRL15...    46   0.80   1
(L30130) Borrelia garinii (strain NT29) internal transcribed...    46   0.80   1
(FJ790497) Borrelia garinii strain J1 5S-23S ribosomal RNA i...    46   0.80   1
(FJ707483) Borrelia sp. 07-5A24D_P982 5S-23S ribosomal RNA i...    46   0.80   1
(FJ172758) Borrelia garinii isolate T29 5S-23S ribosomal RNA...    46   0.80   1
(EU931569) Borrelia garinii strain C14 5S-23S ribosomal RNA ...    46   0.80   1
(EU931567) Borrelia garinii strain M829 5S-23S ribosomal RNA...    46   0.80   1
(EU635984) Borrelia garinii strain Nov 14606 5S-23S ribosoma...    46   0.80   1
(EU635983) Borrelia garinii strain Nov 2006 5S-23S ribosomal...    46   0.80   1
(EU635982) Borrelia garinii strain Nov 1006 5S-23S ribosomal...    46   0.80   1
(EU160461) Borrelia garinii isolate R77 5S-23S ribosomal RNA...    46   0.80   1
(EF488986) Borrelia garinii strain Nov9906 5S-23S ribosomal ...    46   0.80   1
(D84403) Borrelia garinii (strain ASF) DNA, internal transcr...    46   0.80   1
(DQ469903) Borrelia garinii strain Tom 3803 5S-23S ribosomal...    46   0.80   1
(DQ469901) Borrelia garinii strain Tom 1003 5S-23S ribosomal...    46   0.80   1
(DQ469897) Borrelia garinii strain Tom 5102 5S-23S ribosomal...    46   0.80   1
(DQ469895) Borrelia garinii strain Mng 1602 5S-23S ribosomal...    46   0.80   1
(DQ469893) Borrelia garinii strain BgVir-1 5S-23S ribosomal ...    46   0.80   1
(DQ469891) Borrelia garinii strain Nov 2005 5S-23S ribosomal...    46   0.80   1
(DQ469890) Borrelia garinii strain Nov 405 5S-23S ribosomal ...    46   0.80   1
(DQ319191) Borrelia garinii strain TP 5S-23S ribosomal RNA i...    46   0.80   1
(DQ319190) Borrelia garinii strain HQ 5S-23S ribosomal RNA i...    46   0.80   1
(DQ188935) Borrelia garinii strain nms3 5S-23S ribosomal RNA...    46   0.80   1
(DQ188934) Borrelia garinii strain nms2 5S-23S ribosomal RNA...    46   0.80   1
(DQ156526) Borrelia garinii isolate VH20 5S-23S ribosomal RN...    46   0.80   1
(DQ156525) Borrelia garinii isolate JW3 5S-23S ribosomal RNA...    46   0.80   1
(DQ150546) Borrelia garinii clone VH11 5S-23S ribosomal RNA ...    46   0.80   1
(DQ150542) Borrelia garinii clone VH1 5S-23S ribosomal RNA i...    46   0.80   1
(DQ150539) Borrelia garinii clone ALH1 5S-23S ribosomal RNA ...    46   0.80   1
(DQ150536) Borrelia garinii clone JW1 5S-23S ribosomal RNA i...    46   0.80   1
(DQ102468) Borrelia garinii isolate HLJ-111 5S-23S ribosomal...    46   0.80   1
(DQ102467) Borrelia garinii isolate HLJ-35 5S-23S ribosomal ...    46   0.80   1
(DQ102463) Borrelia garinii strain NMK3 5S-23S ribosomal RNA...    46   0.80   1
(DQ102458) Borrelia garinii isolate HLJ-25 5S-23S ribosomal ...    46   0.80   1
(AY862886) Borrelia burgdorferi isolate Hb-35 5S-23S ribosom...    46   0.80   1
(AY862885) Borrelia burgdorferi isolate Ip-29 5S-23S ribosom...    46   0.80   1
(AY772206) Borrelia garinii isolate Itn-4630 5S-23S ribosoma...    46   0.80   1
(AY741546) Borrelia garinii isolate B-568 5S-23S ribosomal R...    46   0.80   1
(AY741545) Borrelia garinii isolate U-15 5S-23S ribosomal RN...    46   0.80   1
(AY741544) Borrelia garinii isolate Hm11 5S-23S ribosomal RN...    46   0.80   1
(AY603350) Borrelia garinii isolate D-28 5S-23S ribosomal RN...    46   0.80   1
(AY603349) Borrelia garinii isolate Ip-51 5S-23S ribosomal R...    46   0.80   1
(AY583238) Borrelia burgdorferi isolate P-2 5S-23S ribosomal...    46   0.80   1
(AY583237) Borrelia burgdorferi isolate P-12 5S-23S ribosoma...    46   0.80   1
(AY429015) Borrelia garinii from adult tick 5S-23S ribosomal...    46   0.80   1
(AY429014) Borrelia garinii from Homo sapiens 5S-23S ribosom...    46   0.80   1
(AY363451) Borrelia burgdorferi isolate ON96T673 5S-23S ribo...    46   0.80   1
(AY363449) Borrelia burgdorferi isolate ON01T1218 5S-23S rib...    46   0.80   1
(AY363444) Borrelia burgdorferi isolate ON01T1303 5S-23S rib...    46   0.80   1
(AY363430) Borrelia burgdorferi isolate ON02T1431 5S-23S rib...    46   0.80   1
(AY363422) Borrelia burgdorferi isolate ON95T402 5S-23S ribo...    46   0.80   1
(AY363420) Borrelia burgdorferi isolate ON96T650 5S-23S ribo...    46   0.80   1
(AY363417) Borrelia burgdorferi isolate ON96T658 5S-23S ribo...    46   0.80   1
(AY182058) Borrelia burgdorferi isolate CA530 rrf-rrl interg...    46   0.80   1
(AY163784) Borrelia garinii strain LVBT990001 5S-23S ribosom...    46   0.80   1
(AY077824) Borrelia burgdorferi isolate BC97W14 5S-23S ribos...    46   0.80   1
(AY032917) Borrelia burgdorferi strain N40 5S-23S ribosomal ...    46   0.80   1
(AM932202) Borrelia garinii partial IGS, strain Hs-163.            46   0.80   1
(AM932201) Borrelia garinii partial IGS, strain Hs-140.            46   0.80   1
(AM932200) Borrelia garinii partial IGS, strain Hs-131.            46   0.80   1
(AM932199) Borrelia garinii partial IGS, strain Hs-102.            46   0.80   1
(AM748066) Borrelia garinii 5S-23S rRNA IGS, strain Crf-204.       46   0.80   1
(AM748059) Borrelia garinii 5S-23S rRNA IGS, strain Itl-4655.      46   0.80   1
(AM748058) Borrelia garinii 5S-23S rRNA IGS, strain Itn-3248.      46   0.80   1
(AM748057) Borrelia garinii 5S-23S rRNA IGS, strain Ipn-1051.      46   0.80   1
(AM748055) Borrelia garinii 5S-23S rRNA IGS, strain Mo-2141.       46   0.80   1
(AM748053) Borrelia garinii 5S-23S rRNA IGS, strain Ipn-1397.      46   0.80   1
(AM748052) Borrelia garinii 5S-23S rRNA IGS, strain Ipn-2465.      46   0.80   1
(AM748050) Borrelia garinii 5S-23S rRNA IGS, strain Cg-2692.       46   0.80   1
(AM748049) Borrelia garinii 5S-23S rRNA IGS, strain Sb-3174.       46   0.80   1
(AF538267) Borrelia garinii isolate 34 5S-23S ribosomal RNA ...    46   0.80   1
(AF538266) Borrelia garinii isolate 05 5S-23S ribosomal RNA ...    46   0.80   1
(AF221671) Borrelia sp. AI-1 rrf-rrl intergenic spacer, part...    46   0.80   1
(AE004439) Pasteurella multocida subsp. multocida str. Pm70,...    46   0.80   1
(AB178385) Borrelia garinii DNA, 5S-23S rRNA intergenic spac...    46   0.80   1
(AB178384) Borrelia garinii DNA, 5S-23S rRNA intergenic spac...    46   0.80   1
(AB035964) Borrelia garinii DNA, 5S-23S rRNA gene intergenic...    46   0.80   1
(AB035963) Borrelia garinii DNA, 5S-23S rRNA gene intergenic...    46   0.80   1
(AB035962) Borrelia garinii DNA, 5S-23S rRNA gene intergenic...    46   0.80   1
(AB015911) Borrelia garinii DNA, 5S-23S rRNA intergenic spac...    46   0.80   1
(AC015532) Homo sapiens chromosome 18 clone RP11-497J22 map ...    38   0.97   3
(AC009717) Homo sapiens chromosome 18, clone RP11-534N16, co...    38   0.98   3
(AC109203) Mus musculus chromosome 18, clone RP23-2B18, comp...    44   1.0    4
(AC216944) Populus trichocarpa clone POP072-L18, complete se...    40   1.1    3
(BX284651) Mouse DNA sequence from clone RP23-308C21 on chro...    40   1.4    3
(AC189644) Brassica rapa subsp. pekinensis clone KBrS008K03,...    40   1.6    2
(CT572993) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    32   1.6    2
(AC069297) Mus musculus strain C57BL6/J chromosome 12 clone ...    32   1.6    2
(CT571245) Mouse DNA sequence from clone RP23-2N7 on chromos...    32   1.6    2
(AC174232) Mus musculus BAC clone RP24-66G1 from chromosome ...    34   1.6    2
(AC106722) Homo sapiens 3 BAC RP11-107G13 (Roswell Park Canc...    42   1.6    2
(AC114758) Homo sapiens chromosome 4 clone RP11-339C11, WORK...    32   1.6    2
(AC142409) Mus musculus BAC clone RP24-185L20 from chromosom...    34   1.6    2
(AC182840) Mus musculus chromosome Y clone RP24-115I18, WORK...    34   1.6    2
(AP003761) Oryza sativa Japonica Group genomic DNA, chromoso...    38   1.8    2
(FH252548) CHO_OF3212xl22f1.ab1 CHO_OF3 Nicotiana tabacum ge...    40   1.8    2
(AC233418) Solanum tuberosum chromosome 1 clone RH067F18, **...    40   1.9    2
(AY582139) Panax ginseng chloroplast, complete genome.             38   2.0    2
(AC209796) MACACA MULATTA BAC clone CH250-540A18 from chromo...    38   2.0    2
(AC009809) Homo sapiens chromosome 3 clone RP11-246A10 map 3...    42   2.1    2
(DX541460) GH_MBb0028B17f GH_MBb Gossypium hirsutum genomic ...    34   2.1    2
(BB644072) Mus musculus adult male corpora quadrigemina cDNA...    32   2.2    2
(AC023732) Drosophila melanogaster X BAC RP98-42M11 (Roswell...    42   2.2    2
(AP003621) Oryza sativa Japonica Group genomic DNA, chromoso...    38   2.2    2
(EU028329) Glycine max clone BAC gmw1-24M16 genomic sequence.      40   2.4    4
(AC232021) Solanum tuberosum chromosome 1 clone RH049G02, **...    44   2.5    3
(BH991768) oed16c01.b1 B.oleracea002 Brassica oleracea genom...    40   2.8    2
(EU561659) Aphidius colemani isolate Aco internal transcribe...    38   2.8    2
(EJ949016) 1093018932160 Global-Ocean-Sampling_GS-30-02-01-1...    38   2.8    2
(FJ495549) Aphidius colemani clone Ac4 5.8S ribosomal RNA ge...    38   2.9    2
(AC163474) Bos taurus clone CH240-103F14, WORKING DRAFT SEQU...    44   2.9    2
(EJ987995) 1093023025410 Global-Ocean-Sampling_GS-30-02-01-1...    34   3.0    2
(AP009356) Onion yellows phytoplasma OY-W genomic DNA, parti...    34   3.1    4
(CT573499) Zebrafish DNA sequence from clone DKEYP-106G6 in ...    44   3.2    1
(CT573067) Zebrafish DNA sequence from clone CH211-57D2 in l...    44   3.2    1
(CR855301) Zebrafish DNA sequence from clone CH211-193K8 in ...    44   3.2    1
(CR848742) Zebrafish DNA sequence from clone DKEY-181C1 in l...    44   3.2    1
(CR847873) Zebrafish DNA sequence from clone DKEY-283N20 in ...    44   3.2    1
(CR407555) Zebrafish DNA sequence from clone DKEY-260H8 in l...    44   3.2    1
(CR388221) Zebrafish DNA sequence from clone DKEY-18L16.           44   3.2    1
(CR381605) Zebrafish DNA sequence from clone CH211-156J19 in...    44   3.2    1
(CR352242) Zebrafish DNA sequence from clone CH211-218G4 in ...    44   3.2    1
(BX470131) Zebrafish DNA sequence from clone CH211-175M2 in ...    44   3.2    1
(BX322616) Zebrafish DNA sequence from clone DKEY-21K24 in l...    44   3.2    1
(AL929005) Zebrafish DNA sequence from clone CH211-223P8 in ...    44   3.2    1
(GF045891) pRRL2:Newb:20080411:48851 USMARC Pig Breed SNP Di...    44   3.2    1
(BV963482) pRRL2:Newb:20080411:343729 USMARC Pig Breed SNP D...    44   3.2    1
(BV422409) S229P611RC4.T0 GermanShepherd Canis familiaris ST...    44   3.2    1
(BV225547) S233P6430RD7.T0 LabradorRetriever Canis familiari...    44   3.2    1
(AL772216) Mouse DNA sequence from clone RP23-153M22 on chro...    44   3.2    1
(AC163273) Mus musculus chromosome 5, clone RP24-396E18, com...    44   3.2    1
(AC155272) Mus musculus BAC clone RP23-79N13 from chromosome...    44   3.2    1
(AC125448) Mus musculus chromosome 10, clone RP23-122D10, co...    44   3.2    1
(AC124134) Mus musculus chromosome 12, clone RP23-235G12, co...    44   3.2    1
(AC123935) Mus musculus BAC clone RP23-354J3 from chromosome...    44   3.2    1
(AC115288) Mus musculus BAC clone RP23-47P24 from 9, complet...    44   3.2    1
(AC112925) Mus musculus chromosome 5, clone RP23-136I18, com...    44   3.2    1
(AC110898) Mus musculus chromosome 18, clone RP24-114C6, com...    44   3.2    1
(AC102009) Mus musculus chromosome 10, clone RP24-512D20, co...    44   3.2    1
(CR974436) M.murinus DNA sequence from clone CH257-25J2.           44   3.2    1
(AC201839) Pongo abelii BAC clone CH276-455H17 from chromoso...    44   3.2    1
(AC199097) Pongo abelii BAC clone CH276-76L8 from chromosome...    44   3.2    1
(FJ565680) Caulerpa filiformis ATP synthase CF0 C subunit (a...    44   3.2    1
(CU914524) S.lycopersicum DNA sequence from clone LE_HBa-107...    44   3.2    1
(CU633897) Podospora anserina genomic DNA chromosome 1, supe...    44   3.2    1
(CT573051) Medicago truncatula chromosome 5 clone mth2-15e15...    44   3.2    1
(CR382131) Yarrowia lipolytica strain CLIB122 chromosome E c...    44   3.2    1
(AP010932) Solanum lycopersicum DNA, chromosome 8, clone: C0...    44   3.2    1
(AP010434) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   3.2    1
(AP007151) Aspergillus oryzae RIB40 genomic DNA, SC005.            44   3.2    1
(AP006393) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   3.2    1
(AP004474) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   3.2    1
(AM479377) Vitis vinifera, whole genome shotgun sequence, co...    44   3.2    1
(AM474919) Vitis vinifera contig VV78X095527.10, whole genom...    44   3.2    1
(AM468463) Vitis vinifera contig VV78X070825.3, whole genome...    44   3.2    1
(AM468287) Vitis vinifera contig VV78X169457.16, whole genom...    44   3.2    1
(AM466835) Vitis vinifera contig VV78X021873.3, whole genome...    44   3.2    1
(AM455611) Vitis vinifera contig VV78X255663.12, whole genom...    44   3.2    1
(AM436088) Vitis vinifera contig VV78X035910.5, whole genome...    44   3.2    1
(AM430240) Vitis vinifera contig VV78X066936.6, whole genome...    44   3.2    1
(AM427142) Vitis vinifera contig VV78X210664.6, whole genome...    44   3.2    1
(AL132960) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    44   3.2    1
(AF361587) Arabidopsis thaliana AT3g53960/F5K20_260 mRNA, co...    44   3.2    1
(AF303689) Zigadenus paniculatus chloroplast tRNA-Leu (trnL)...    44   3.2    1
(EA414760) Sequence 16868 from patent US 7319142.                  44   3.2    1
(EA406289) Sequence 2281 from patent US 7319142.                   44   3.2    1
(CQ870178) Sequence 599 from Patent WO2004074320.                  44   3.2    1
(CQ610992) Sequence 38750 from Patent WO0171042.                   44   3.2    1
(CQ610991) Sequence 38749 from Patent WO0171042.                   44   3.2    1
(AC235096) Felis catus BAC clone FCAB-35H12 from chromosome ...    44   3.2    1
(U39384) Dacus cf. vertebratus 16S ribosomal RNA gene, mitoc...    44   3.2    1
(EU926936) Parastenopa sp. B HYH-2008 16S ribosomal RNA gene...    44   3.2    1
(EU926919) Acrotaeniostola sexvittata voucher YSUW98071108 1...    44   3.2    1
(EU679268) Dacus vertebratus isolate Tanzania 589 16S riboso...    44   3.2    1
(EU679267) Dacus vertebratus isolate Nigeria 1400 16S riboso...    44   3.2    1
(DQ471422) Xyphosia miliaria 16S ribosomal RNA gene, partial...    44   3.2    1
(DQ471416) Neaspilota albidipennis 16S ribosomal RNA gene, p...    44   3.2    1
(CP000208) Drosophila melanogaster genomic scaffold 21100002...    44   3.2    1
(BT022622) Drosophila melanogaster IP06943 full insert cDNA.       44   3.2    1
(BT022601) Drosophila melanogaster IP06843 full insert cDNA.       44   3.2    1
(AY190947) Drosophila pseudoobscura clone DPSF01_40_G23 (D14...    44   3.2    1
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 44   3.2    1
(AF425337) Paralithodes brevipes NADH dehydrogenase subunit ...    44   3.2    1
(AF357008) Drosophila melanogaster 5.9 kb tandem repeat sequ...    44   3.2    1
(AF152091) Toxotrypana littoralis 16S ribosomal RNA gene, pa...    44   3.2    1
(AF152057) Anastrepha bezzii 16S ribosomal RNA gene, partial...    44   3.2    1
(AE014298) Drosophila melanogaster chromosome X, complete se...    44   3.2    1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    44   3.2    1
(AC104627) Drosophila melanogaster X BAC RP98-4A11 (Roswell ...    44   3.2    1
(AC093543) Trypanosoma brucei chromosome 3 clone RPCI93-5L5,...    44   3.2    1
(AC023741) Drosophila melanogaster X BAC RP98-23O9 (Roswell ...    44   3.2    1
(AC023695) Drosophila melanogaster X BAC RP98-25I9 (Roswell ...    44   3.2    1
(AP003064) Homo sapiens genomic DNA, chromosome 11q, clone:C...    44   3.2    1
(AL163052) Human chromosome 14 DNA sequence BAC R-769B21 of ...    44   3.2    1
(AL162732) Human DNA sequence from clone RP11-32M23 on chrom...    44   3.2    1
(AL161912) Human DNA sequence from clone RP11-403N16 on chro...    44   3.2    1
(AL161782) Human DNA sequence from clone RP11-327L9 on chrom...    44   3.2    1
(AL138773) Human DNA sequence from clone RP4-660B20 on chrom...    44   3.2    1
(AF170801) Homo sapiens chromosome 8 clone CTA-392B3 map p23...    44   3.2    1
(AC107970) Homo sapiens chromosome 11, clone CTD-2238L16, co...    44   3.2    1
(AC087441) Homo sapiens chromosome 11, clone RP11-438N5, com...    44   3.2    1
(AC067902) Homo sapiens chromosome 11, clone RP11-72C9, comp...    44   3.2    1
(AC011302) Homo sapiens BAC clone RP11-333E9 from Y, complet...    44   3.2    1
(AC007222) Homo sapiens chromosome 16 clone RP11-441K8, comp...    44   3.2    1
(AC162839) Bos taurus clone CH240-124I2, WORKING DRAFT SEQUE...    44   3.2    1
(AC159726) Bos taurus clone CH240-78M6, WORKING DRAFT SEQUEN...    44   3.2    1
(AC158780) Mus musculus chromosome 1 clone RP23-182E14 map 1...    44   3.2    1
(AC151150) Bos taurus clone CH240-404J10, WORKING DRAFT SEQU...    44   3.2    1
(AC149624) Papio anubis clone RP41-414H9, WORKING DRAFT SEQU...    44   3.2    1
(AC148565) Papio anubis clone RP41-260B21, WORKING DRAFT SEQ...    44   3.2    1
(AC145101) Homo sapiens chromosome 5 clone RP11-1401J3, WORK...    44   3.2    1
(AC143625) Macaca mulatta clone CH250-269H19, *** SEQUENCING...    44   3.2    1
(AC141818) Apis mellifera clone CH224-62B21, *** SEQUENCING ...    44   3.2    1
(AC137181) Rattus norvegicus clone CH230-unknown, WORKING DR...    44   3.2    1
(AC134493) Rattus norvegicus clone CH230-246E21, *** SEQUENC...    44   3.2    1
(AC133667) Rattus norvegicus clone CH230-274K12, WORKING DRA...    44   3.2    1
(AC127969) Rattus norvegicus clone CH230-308B24, *** SEQUENC...    44   3.2    1
(AC126597) Rattus norvegicus clone CH230-182L13, WORKING DRA...    44   3.2    1
(AC121181) Rattus norvegicus clone CH230-341F13, *** SEQUENC...    44   3.2    1
(AC117288) Rattus norvegicus clone CH230-271K18, *** SEQUENC...    44   3.2    1
(AC115195) Rattus norvegicus clone CH230-251C19, WORKING DRA...    44   3.2    1
(AC106310) Rattus norvegicus clone CH230-123B14, *** SEQUENC...    44   3.2    1
(AC104401) Rattus norvegicus clone CH230-132A21, *** SEQUENC...    44   3.2    1
(AC099478) Rattus norvegicus clone CH230-225J11, *** SEQUENC...    44   3.2    1
(AC097553) Rattus norvegicus clone CH230-191F24, *** SEQUENC...    44   3.2    1
(FP102800) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   3.2    1
(FP017210) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.2    1
(CU928646) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.2    1
(CU861575) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.2    1
(CU633683) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.2    1
(CU633565) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.2    1
(CU571005) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.2    1
(AC094386) Rattus norvegicus clone CH230-3N12, WORKING DRAFT...    44   3.2    1
(AC091101) Homo sapiens chromosome 11 clone RP11-191P12 map ...    44   3.2    1
(AC090831) Homo sapiens chromosome 11 clone CTD-2337N9 map 1...    44   3.2    1
(AC090777) Homo sapiens chromosome 11 clone CTD-2280G14 map ...    44   3.2    1
(CU019633) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   3.2    1
(CT573278) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   3.2    1
(CR388043) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   3.2    1
(AP008087) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   3.2    1
(AL928844) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   3.2    1
(AC236616) Spermophilus tridecemlineatus clone VMRC20-548O2,...    44   3.2    1
(AC232962) Tupaia belangeri clone CH275-282P5, WORKING DRAFT...    44   3.2    1
(AC229958) Tupaia belangeri clone CH275-170D24, WORKING DRAF...    44   3.2    1
(AC226019) Solanum lycopersicum chromosome 6 clone C06SLm012...    44   3.2    1
(AC218317) Bos taurus clone CH240-287J19, WORKING DRAFT SEQU...    44   3.2    1
(AC216312) Nomascus leucogenys leucogenys clone CH271-426O22...    44   3.2    1
(AC208295) Spermophilus tridecemlineatus clone VMRC20-200C4,...    44   3.2    1
(AC202486) Medicago truncatula clone mth2-176c14, WORKING DR...    44   3.2    1
(AC199451) Macaca mulatta clone CH250-169L23, WORKING DRAFT ...    44   3.2    1
(AC191220) Spermophilus tridecemlineatus clone VMRC20-320F21...    44   3.2    1
(AC190814) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    44   3.2    1
(AC189837) Colobus guereza clone CH272-18K21, WORKING DRAFT ...    44   3.2    1
(AC186218) Canis lupus familiaris chromosome 9 clone XX-137N...    44   3.2    1
(AC181737) Strongylocentrotus purpuratus clone R3-1037L12, W...    44   3.2    1
(AC178867) Strongylocentrotus purpuratus clone R3-26P12, WOR...    44   3.2    1
(AC178809) Strongylocentrotus purpuratus clone R3-29J10, WOR...    44   3.2    1
(AC172083) Bos taurus clone CH240-305O8, WORKING DRAFT SEQUE...    44   3.2    1
(AC164475) Bos taurus clone CH240-149A14, *** SEQUENCING IN ...    44   3.2    1
(AC021715) Homo sapiens chromosome 14 clone RP11-171C4 map 1...    44   3.2    1
(AC020019) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   3.2    1
(AC019192) Homo sapiens chromosome 14 clone RP11-328E13, WOR...    44   3.2    1
(AC018888) Homo sapiens chromosome 11 clone RP11-438N5, WORK...    44   3.2    1
(AC013869) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   3.2    1
(AC011307) Homo sapiens clone RP11-493M14, *** SEQUENCING IN...    44   3.2    1
(BH555397) BOGXQ05TR BOGX Brassica oleracea genomic clone BO...    44   3.2    1
(BH488035) BOHJA16TF BOHJ Brassica oleracea genomic clone BO...    44   3.2    1
(BH148898) ENTPE09TF Entamoeba histolytica Sheared DNA Entam...    44   3.2    1
(AZ688705) ENTJY42TF Entamoeba histolytica Sheared DNA Entam...    44   3.2    1
(AY897461) Wolbachia endosymbiont of Drosophila mojavensis, ...    44   3.2    1
(AQ639390) 927P1-2B6.TV 927P1 Trypanosoma brucei genomic clo...    44   3.2    1
(FI342912) CH321-25M18.y CHORI-321 Drosophila melanogaster g...    44   3.2    1
(FI299465) AdH1155-CPY2-E4TR AdH1 Arachis duranensis genomic...    44   3.2    1
(FH482799) CHO_OF4573xo21f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   3.2    1
(FH132531) CHO_OF3508xm02f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   3.2    1
(ET106927) QM0AAC13BH08FM1 CCH3 Citrus clementina genomic cl...    44   3.2    1
(ER946282) CH260-2E10_T7 CHORI-260 Meleagris gallopavo genom...    44   3.2    1
(ER660560) SB_BBc60-O07.F SB_BBc Sorghum bicolor genomic 5',...    44   3.2    1
(EK125488) 1092976900372 Global-Ocean-Sampling_GS-31-01-01-1...    44   3.2    1
(EJ503889) 1095403672266 Global-Ocean-Sampling_GS-28-01-01-1...    44   3.2    1
(ED809453) ML__Ba0044D01f ML__Ba Mimulus lewisii genomic, ge...    44   3.2    1
(DX549385) GH_MBb0080K23f GH_MBb Gossypium hirsutum genomic ...    44   3.2    1
(DX533272) GH_MBb0030N12f GH_MBb Gossypium hirsutum genomic ...    44   3.2    1
(DX441009) BE1086_H24_R IASMA L1 HindIII BAC library Vitis v...    44   3.2    1
(AL055002) Drosophila melanogaster genome survey sequence TE...    44   3.2    1
(DE477980) Bombyx mori genomic DNA, Fosmid clone:GBMFno80_m2...    44   3.2    1
(DE477262) Bombyx mori genomic DNA, Fosmid clone:GBMFno79_m2...    44   3.2    1
(DE476903) Bombyx mori genomic DNA, Fosmid clone:GBMFno79_f0...    44   3.2    1
(CZ536029) SRAA-aad01a04.b1 Strongyloides ratti whole genome...    44   3.2    1
(CZ521891) GMW2-87K11a.b1 GMW2 Glycine max genomic, genomic ...    44   3.2    1
(CW488769) fsbb001f265f14k0 Sorghum methylation filtered lib...    44   3.2    1
(CW373647) fsbb001f050c05k0 Sorghum methylation filtered lib...    44   3.2    1
(CW024935) 104_226_10487864_116_30525 Sorghum methylation fi...    44   3.2    1
(CT840453) Equus caballus GSS, BAC clone CH241-11I19, SP6 en...    44   3.2    1
(CT839285) Equus caballus GSS, BAC clone CH241-9O1, T7 end s...    44   3.2    1
(CT497571) A BAC library has been constructed from cultivar ...    44   3.2    1
(CT417941) Sus scrofa genomic clone CH242-450B20, genomic su...    44   3.2    1
(CG973091) MBENP75TR mth2 Medicago truncatula genomic clone ...    44   3.2    1
(CE835246) tigr-gss-dog-17000332387585 Dog Library Canis lup...    44   3.2    1
(CE835237) tigr-gss-dog-17000332387290 Dog Library Canis lup...    44   3.2    1
(CE066548) tigr-gss-dog-17000322644022 Dog Library Canis lup...    44   3.2    1
(CC236392) CH261-190K5_Sp6.1 CH261 Gallus gallus genomic clo...    44   3.2    1
(CC235709) CH261-109K11_Sp6.1 CH261 Gallus gallus genomic cl...    44   3.2    1
(BZ877133) CH240_214D10.TV CHORI-240 Bos taurus genomic clon...    44   3.2    1
(BZ519710) BOMRR38TF BO_2_3_KB Brassica oleracea genomic clo...    44   3.2    1
(BZ111276) CH230-218L19.TJ CHORI-230 Segment 1 Rattus norveg...    44   3.2    1
(BX202064) Danio rerio genomic clone DKEY-225N17, genomic su...    44   3.2    1
(AG390499) Mus musculus molossinus DNA, clone:MSMg01-207C17....    44   3.2    1
(EL877097) IP07043.5prime IP Drosophila melanogaster iPCR Am...    44   3.2    1
(EL877009) IP06943.5prime IP Drosophila melanogaster iPCR Am...    44   3.2    1
(EL877008) IP06943.3prime IP Drosophila melanogaster iPCR Am...    44   3.2    1
(EL876926) IP06843.5prime IP Drosophila melanogaster iPCR Am...    44   3.2    1
(EL876925) IP06843.3prime IP Drosophila melanogaster iPCR Am...    44   3.2    1
(EC393639) CcLS2a82m17f1 Carp skin library 2 Cyprinus carpio...    44   3.2    1

>(C90426) Dictyostelium discoideum slug cDNA, clone SSI422.
          Length = 317

 Score =  297 bits (150), Expect(2) = 2e-79
 Identities = 150/150 (100%)
 Strand = Plus / Plus


Query: 13  gaagtagatgaagaaacaattttaaatggggttccaattgctgataatgccgcccaatca 72
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13  gaagtagatgaagaaacaattttaaatggggttccaattgctgataatgccgcccaatca 72


Query: 73  cttaatgaagcaattgaaatggcaaaaggaaaggcaaaaggatttggatttggattcttt 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  cttaatgaagcaattgaaatggcaaaaggaaaggcaaaaggatttggatttggattcttt 132


Query: 133 taaataatataaaatataaaatatagataa 162
           ||||||||||||||||||||||||||||||
Sbjct: 133 taaataatataaaatataaaatatagataa 162

 Score = 30.2 bits (15), Expect(2) = 2e-79
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 181 ccccaaacttaatta 195
           |||||||||||||||
Sbjct: 181 ccccaaacttaatta 195

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 279,367,285
Number of extensions: 21260068
Number of successful extensions: 2409063
Number of sequences better than 10.0: 596
Length of query: 316
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 293
Effective length of database: 102,190,702,835
Effective search space: 29941875930655
Effective search space used: 29941875930655
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05449-1 (Contig-U05449-1Q) /CSM_Contig/Contig-U05449-1Q.Seq.d
         (316 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 247,536,381
Number of extensions: 2419360
Number of successful extensions: 6277
Number of sequences better than 10.0: 0
Number of HSP's gapped: 6276
Number of HSP's successfully gapped: 0
Length of query: 105
Length of database: 1,061,185,681
Length adjustment: 73
Effective length of query: 32
Effective length of database: 822,588,977
Effective search space: 26322847264
Effective search space used: 26322847264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U05449-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0