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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05423-1
Contig ID Contig-U05423-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05423-1 (Contig-U05423-1Q) /CSM_Contig/Contig-U05423-1Q.Seq.d
TACTAATTGGATAATAAAAAAAAAATAAAAAAAATAGTAAAAAAAAATTA
AAATAAAAATAAAAAAAAATAAATAAAAAAAAAAAAAAATAAATAATTAA
ATAATTATATAAAANTAAATNAAAAATGAAAATGGAGGAATACACATTCA
TAAAAAGGGGTGATGGATATACATTAGACTCTAAATTTCCAAATCAATTA
AATGGTGTTATTACACATCAAGAATTTAATAGTATTATACAAGAATTTCA
CTCAACAGTAAATAGACTCCCAACACTTCTTTATTTAGTTTTACCAGTTT
TAGCCATTCTTATTTTTCTCGTAAAATTTTTAGGTTTAAGTTTCTTACAT
TTTTTGGTTGTAATGGGAATTATTTTAGCATTTGATTTAGGAATATTAAT
TTTTATCATAGTATTTTATATAGTTAATAAAGTTAAATTTGGTGATCTTA
TAAAATCATTAAATCAACAATATCAACATAGATCAATATCATTTTCTTCT
GCATCTTTTTTCCTTTTCAAAATTAAAATGCATTATAATATCATAGGTGT
AGCCAATGATACTCCATTTGGTCCAACCTCTGAAACTTCACCACTCATCG
CATCCGTACATAATGTTTAGGTGTTTAGGATATTTTTTTTTTTTTTTTAT
AGATTTAAATTAAAACTATAATGCAAAATAAAAATAAAAATAAAAATAAA
AATAAAAATAA
Gap no gap
Contig length 711
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2602260
End point 2602972
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05423
List of clone(s) 

est1=SSI262E,1,712
Translated Amino Acid sequence 
lig**kknkknskkklk*k*kkinkkkkk*iik*LYKXKXKMKMEEYTFIKRGDGYTLDS
KFPNQLNGVITHQEFNSIIQEFHSTVNRLPTLLYLVLPVLAILIFLVKFLGLSFLHFLVV
MGIILAFDLGILIFIIVFYIVNKVKFGDLIKSLNQQYQHRSISFSSASFFLFKIKMHYNI
IGVANDTPFGPTSETSPLIASVHNV*vfrifffffyrfklkl*ckikikikikiki
Translated Amino Acid sequence (All Frames) 
Frame A:
y*ldnkkkikkivkkn*nknkkk*ikkkknk*lnnyikxnxk*kwrnths*kgvmdih*t
lnfqin*mvllhiknlivlyknftqq*idsqhffi*fyqf*pflffs*nf*v*vsyifwl
*welf*hli*ey*fls*yfi*liklnlvil*nh*inninidqyhfllhlfsfsklkciii
s*v*pmilhlvqplklhhsshpyimfrclgyfffffidln*nynak*k*k*k*k*k*


Frame B:
tnwiikkk*kk**kkikikikknk*kkkkinn*iii*x*xknenggihihkkg*wiyirl
*isksikwcyytsri**yytrislnsk*tpntslfsftsfshsyfsrkifrfkfltffgc
ngnyfsi*frninfyhsilys**s*iw*sykiikstist*iniiffciffpfqn*nal*y
hrcsq*ysiwsnl*nftthrirt*clgv*diffffl*i*iktimqnknknknknkn


Frame C:
lig**kknkknskkklk*k*kkinkkkkk*iik*LYKXKXKMKMEEYTFIKRGDGYTLDS
KFPNQLNGVITHQEFNSIIQEFHSTVNRLPTLLYLVLPVLAILIFLVKFLGLSFLHFLVV
MGIILAFDLGILIFIIVFYIVNKVKFGDLIKSLNQQYQHRSISFSSASFFLFKIKMHYNI
IGVANDTPFGPTSETSPLIASVHNV*vfrifffffyrfklkl*ckikikikikiki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05423-1 (Contig-U05423-1Q)
/CSM_Contig/Contig-U05423-1Q.Seq.d
         (711 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05423-1 (Contig-U05423-1Q) /CSM_Contig/Conti...   989  0.0
Contig-U11443-1 (Contig-U11443-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U08409-1 (Contig-U08409-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U03858-1 (Contig-U03858-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U14177-1 (Contig-U14177-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U14053-1 (Contig-U14053-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U12677-1 (Contig-U12677-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11536-1 (Contig-U11536-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U08172-1 (Contig-U08172-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U06713-1 (Contig-U06713-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U05423-1 (Contig-U05423-1Q) /CSM_Contig/Contig-U05423-1Q.Seq.d
          Length = 711

 Score =  989 bits (499), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Plus

                                                                       
Query: 134 ggaggaatacacattcataaaaaggggtgatggatatacattagactctaaatttccaaa 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ggaggaatacacattcataaaaaggggtgatggatatacattagactctaaatttccaaa 193

                                                                       
Query: 194 tcaattaaatggtgttattacacatcaagaatttaatagtattatacaagaatttcactc 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tcaattaaatggtgttattacacatcaagaatttaatagtattatacaagaatttcactc 253

                                                                       
Query: 254 aacagtaaatagactcccaacacttctttatttagttttaccagttttagccattcttat 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aacagtaaatagactcccaacacttctttatttagttttaccagttttagccattcttat 313

                                                                       
Query: 314 ttttctcgtaaaatttttaggtttaagtttcttacattttttggttgtaatgggaattat 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttttctcgtaaaatttttaggtttaagtttcttacattttttggttgtaatgggaattat 373

                                                                       
Query: 374 tttagcatttgatttaggaatattaatttttatcatagtattttatatagttaataaagt 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tttagcatttgatttaggaatattaatttttatcatagtattttatatagttaataaagt 433

                                                                       
Query: 434 taaatttggtgatcttataaaatcattaaatcaacaatatcaacatagatcaatatcatt 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 taaatttggtgatcttataaaatcattaaatcaacaatatcaacatagatcaatatcatt 493

                                                                       
Query: 494 ttcttctgcatcttttttccttttcaaaattaaaatgcattataatatcataggtgtagc 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttcttctgcatcttttttccttttcaaaattaaaatgcattataatatcataggtgtagc 553

                                                                       
Query: 554 caatgatactccatttggtccaacctctgaaacttcaccactcatcgcatccgtacataa 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 caatgatactccatttggtccaacctctgaaacttcaccactcatcgcatccgtacataa 613

                              
Query: 614 tgtttaggtgtttaggata 632
           |||||||||||||||||||
Sbjct: 614 tgtttaggtgtttaggata 632


 Score = 52.0 bits (26), Expect = 8e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 649 atagatttaaattaaaactataatgc 674
           ||||||||||||||||||||||||||
Sbjct: 649 atagatttaaattaaaactataatgc 674


>Contig-U11443-1 (Contig-U11443-1Q) /CSM_Contig/Contig-U11443-1Q.Seq.d
          Length = 2083

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 455 atcattaaatcaacaatatcaaca 478
           ||||||||||||||| ||||||||
Sbjct: 43  atcattaaatcaacattatcaaca 66


>Contig-U08409-1 (Contig-U08409-1Q) /CSM_Contig/Contig-U08409-1Q.Seq.d
          Length = 445

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 424 ttaataaagttaaatttggtgatcttat 451
           |||||||| |||||||||||||| ||||
Sbjct: 273 ttaataaaattaaatttggtgattttat 300


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9955
Number of Sequences: 6905
Number of extensions: 9955
Number of successful extensions: 1089
Number of sequences better than 10.0: 120
length of query: 711
length of database: 5,674,871
effective HSP length: 16
effective length of query: 695
effective length of database: 5,564,391
effective search space: 3867251745
effective search space used: 3867251745
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.20
Homology vs DNA 
Query= Contig-U05423-1 (Contig-U05423-1Q) /CSM_Contig/Contig-U05423-1Q.Seq.d
         (711 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90643) Dictyostelium discoideum slug cDNA, clone SSI262.        527   0.0    3
(AU073748) Dictyostelium discoideum slug cDNA, clone SSI262.      165   4e-38  2
(AC216438) Oryza punctata clone OP__Ba0080P01, *** SEQUENCIN...    58   5e-04  1
(CU462865) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.12   1
(CZ510217) GMW2-68E24a.g1 GMW2 Glycine max genomic, genomic ...    50   0.12   1
(AC162967) Bos taurus clone CH240-127N19, WORKING DRAFT SEQU...    40   0.29   3
(CT357111) Sus scrofa genomic clone CH242-396I6, genomic sur...    36   0.35   2
(FP236690) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.47   1
(DX147834) OG_ABa0184D24.r OG_ABa Oryza granulata genomic cl...    48   0.47   1
(DU166507) OG_ABa0029M11.r OG_ABa Oryza granulata genomic cl...    48   0.47   1
(DU165878) OG_ABa0025P05.f OG_ABa Oryza granulata genomic cl...    48   0.47   1
(DU160662) OG_ABa0012P17.r OG_ABa Oryza granulata genomic cl...    48   0.47   1
(DT787810) 126488598 TL1 Tribolium castaneum cDNA clone 77A2...    48   0.47   1
(BG443452) GA__Ea0020L24f Gossypium arboreum 7-10 dpa fiber ...    48   0.47   1
(AC231691) Tupaia belangeri clone CH275-425F20, WORKING DRAF...    36   0.48   5
(BU777913) SJEDPD05 SJE Schistosoma japonicum cDNA, mRNA seq...    44   0.82   2
(FH238075) CHO_OF3438xa01r2.ab1 CHO_OF3 Nicotiana tabacum ge...    32   1.3    3
(FH516552) CHO_OF4809xh09f1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   1.4    3
(AC129416) Homo sapiens 12 BAC RP11-464G3 (Roswell Park Canc...    46   1.9    1
(AC234389) Ochotona princeps clone VMRC40-107O12, WORKING DR...    46   1.9    1
(AC234288) Ochotona princeps clone VMRC40-49C24, WORKING DRA...    46   1.9    1
(AC169470) Sorex araneus clone SA_Ba-164N1, WORKING DRAFT SE...    46   1.9    1
(FI624356) BD_ABa0010E09.f BD_ABa Brachypodium distachyon ge...    46   1.9    1
(AM643963) Entamoeba moshkovskii FIC GSS, clone mosh004e10.q1k.    46   1.9    1
(CT518670) A BAC library has been constructed from cultivar ...    46   1.9    1
(AC218148) Zea mays chromosome 6 clone ZMMBBb-390A13; ZMMBBb...    38   2.6    2
(BH156969) ENTQZ58TR Entamoeba histolytica Sheared DNA Entam...    38   4.5    2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    30   4.8    9
(AM424415) Vitis vinifera contig VV78X145199.14, whole genom...    34   4.9    3
(ER351766) 1092347003951 Global-Ocean-Sampling_GS-34-01-01-1...    40   4.9    2
(DX532476) GH_MBb0079M13f GH_MBb Gossypium hirsutum genomic ...    36   5.6    2
(CR936464) Zebrafish DNA sequence from clone CH73-221H3 in l...    44   7.4    1
(BX088566) Zebrafish DNA sequence from clone DKEY-63E5 in li...    44   7.4    1
(BX004839) Zebrafish DNA sequence from clone DKEY-18A23 in l...    44   7.4    1
(AL928922) Mouse DNA sequence from clone RP23-431J22 on chro...    44   7.4    1
(AF005939) Cavia porcellus L-type voltage-dependent calcium ...    44   7.4    1
(AC103609) Mus musculus chromosome 3, clone RP23-359D10, com...    44   7.4    1
(AB016288) Cavia porcellus mRNA for L-type calcium channel b...    44   7.4    1
(AY350711) Sisymbrium irio clone BAC Sio11E11, complete sequ...    44   7.4    1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    44   7.4    1
(AP004876) Oryza sativa Japonica Group genomic DNA, chromoso...    44   7.4    1
(GC551994) Sequence 64 from patent US 7414110.                     44   7.4    1
(GC551993) Sequence 62 from patent US 7414110.                     44   7.4    1
(GC551983) Sequence 41 from patent US 7414110.                     44   7.4    1
(EA704355) Sequence 83234 from patent US 7365185.                  44   7.4    1
(EA063655) Sequence 1480 from patent US 7171311.                   44   7.4    1
(DL264360) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       44   7.4    1
(DJ130809) Method for identification of useful proteins deri...    44   7.4    1
(DJ032122) BIOMARKERS OF CYCLIN-DEPENDENT KINASE MODULATION.       44   7.4    1
(DJ003191) Compositions and methods for estimating the progn...    44   7.4    1
(DD416145) Diagnosis and Prognosis of Breast Cancer Patients.      44   7.4    1
(DD406836) HEART FAILURE GENE DETERMINATION AND THERAPEUTIC ...    44   7.4    1
(DD231912) METHODS AND COMPOSITIONS FOR DIAGNOSING AND MONIT...    44   7.4    1
(DD159519) Method of controlling electrical current volume g...    44   7.4    1
(DD159517) Method of controlling electrical current volume g...    44   7.4    1
(DD130894) Diagnosis and Prognosis of Breast Cancer Patients.      44   7.4    1
(DD029176) HUMAN CALCIUM CHANNEL COMPOSITIONS AND METHODS US...    44   7.4    1
(DD029175) HUMAN CALCIUM CHANNEL COMPOSITIONS AND METHODS US...    44   7.4    1
(DD029165) HUMAN CALCIUM CHANNEL COMPOSITIONS AND METHODS US...    44   7.4    1
(CS792102) Sequence 21 from Patent WO2007084486.                   44   7.4    1
(CS791683) Sequence 21 from Patent WO2007084485.                   44   7.4    1
(CQ721646) Sequence 7580 from Patent WO02068579.                   44   7.4    1
(CQ720261) Sequence 6195 from Patent WO02068579.                   44   7.4    1
(AX346835) Sequence 1906 from Patent WO0200928.                    44   7.4    1
(AX119931) Sequence 1 from Patent WO0129266.                       44   7.4    1
(HA139728) Sequence 1429 from Patent WO2006024892.                 44   7.4    1
(GP321807) Sequence 1480 from patent US 7514209.                   44   7.4    1
(GM682096) Sequence 25 from Patent WO2008081435.                   44   7.4    1
(GM010255) Sequence 21 from Patent WO2008051260.                   44   7.4    1
(GC698261) Sequence 13506 from patent US 6812339.                  44   7.4    1
(GC692391) Sequence 1764 from patent US 6812339.                   44   7.4    1
(AR892479) Sequence 26 from patent US 7063950.                     44   7.4    1
(AR594400) Sequence 15 from patent US 6812333.                     44   7.4    1
(AR594399) Sequence 14 from patent US 6812333.                     44   7.4    1
(AR594398) Sequence 13 from patent US 6812333.                     44   7.4    1
(AR594397) Sequence 12 from patent US 6812333.                     44   7.4    1
(AR594396) Sequence 11 from patent US 6812333.                     44   7.4    1
(AR594395) Sequence 9 from patent US 6812333.                      44   7.4    1
(AR594394) Sequence 7 from patent US 6812333.                      44   7.4    1
(AR594392) Sequence 1 from patent US 6812333.                      44   7.4    1
(AR431853) Sequence 38 from patent US 6653097.                     44   7.4    1
(AR431852) Sequence 37 from patent US 6653097.                     44   7.4    1
(AR431842) Sequence 26 from patent US 6653097.                     44   7.4    1
(AR105213) Sequence 38 from patent US 6096514.                     44   7.4    1
(AR105212) Sequence 37 from patent US 6096514.                     44   7.4    1
(AR105202) Sequence 26 from patent US 6096514.                     44   7.4    1
(X64298) O.cuniculus mRNA for cardiac calcium channel beta-s...    44   7.4    1
(X64297) O.cuniculus mRNA for cardiac calcium channel beta-s...    44   7.4    1
(AC234579) Felis catus BAC clone FCAB-24H12 from chromosome ...    44   7.4    1
(AC087421) Felis catus clone RP86-177C24, complete sequence.       44   7.4    1
(U95019) Human voltage-dependent calcium channel beta-2c sub...    44   7.4    1
(S60415) myasthenic syndrome antigen B [human, fetal brain, ...    44   7.4    1
(BC136409) Homo sapiens calcium channel, voltage-dependent, ...    44   7.4    1
(AY393859) Homo sapiens voltage-gated calcium channel beta 2...    44   7.4    1
(AY393858) Homo sapiens voltage-gated calcium channel beta 2...    44   7.4    1
(AY027898) Homo sapiens voltage-dependent calcium channel be...    44   7.4    1
(AL611962) Human DNA sequence from clone RP11-45J16 on chrom...    44   7.4    1
(AL450384) Human DNA sequence from clone RP11-383B4 on chrom...    44   7.4    1
(AL450364) Human DNA sequence from clone RP11-499P20 on chro...    44   7.4    1
(AL390865) Human DNA sequence from clone RP11-161L14 on chro...    44   7.4    1
(AL157766) Human DNA sequence from clone RP11-40O20 on chrom...    44   7.4    1
(AK299873) Homo sapiens cDNA FLJ50648 complete cds, highly s...    44   7.4    1
(AK296471) Homo sapiens cDNA FLJ61305 complete cds, highly s...    44   7.4    1
(AK098793) Homo sapiens cDNA FLJ25927 fis, clone CBR05227.         44   7.4    1
(AF423192) Homo sapiens calcium channel beta 2e subunit (CAC...    44   7.4    1
(AF423191) Homo sapiens calcium channel beta 2d subunit (CAC...    44   7.4    1
(AF423190) Homo sapiens calcium channel beta 2c subunit (CAC...    44   7.4    1
(AF423189) Homo sapiens calcium channel beta 2a subunit (CAC...    44   7.4    1
(AF285239) Homo sapiens calcium channel beta 2b subunit vari...    44   7.4    1
(AF193556) Homo sapiens sacsin (SACS) gene, complete cds.          44   7.4    1
(AF137377) Homo sapiens calcium channel beta2a subunit mRNA,...    44   7.4    1
(AF137376) Homo sapiens calcium channel beta2c subunit mRNA,...    44   7.4    1
(AB208917) Homo sapiens mRNA for calcium channel, voltage-de...    44   7.4    1
(AC158253) Neofelis nebulosa clone CH87-38M19, WORKING DRAFT...    44   7.4    1
(AC142552) Danio rerio strain Tue clone CH211-8M10, WORKING ...    44   7.4    1
(AC112888) Rattus norvegicus clone CH230-216H21, *** SEQUENC...    44   7.4    1
(AC111573) Rattus norvegicus clone CH230-64I16, *** SEQUENCI...    44   7.4    1
(FP102227) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU929575) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU695336) Brassica rapa subsp. pekinensis clone KBrB002M18,...    44   7.4    1
(AC079761) Homo sapiens chromosome UNK clone RP11-143G17, **...    44   7.4    1
(AC073368) Homo sapiens chromosome 10 clone RP11-361J1, WORK...    44   7.4    1
(AP004056) Oryza sativa Japonica Group genomic DNA, chromoso...    44   7.4    1
(AL596063) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   7.4    1
(AL356375) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   7.4    1
(AC231140) Oryza minuta clone OM__Ba0022G18, *** SEQUENCING ...    44   7.4    1
(AC198540) Myotis lucifugus clone CH235-247B10, WORKING DRAF...    44   7.4    1
(AC196310) Myotis lucifugus clone CH235-191B11, WORKING DRAF...    44   7.4    1
(AC189504) Brassica rapa subsp. pekinensis clone KBrB087P06,...    44   7.4    1
(AC185196) Felis catus clone RP86-86E21, WORKING DRAFT SEQUE...    44   7.4    1
(AC181174) Strongylocentrotus purpuratus clone R3-15G23, WOR...    44   7.4    1
(AC180669) Strongylocentrotus purpuratus clone R3-3089L16, W...    44   7.4    1
(AC168492) Strongylocentrotus purpuratus clone R3-3117H18, W...    44   7.4    1
(AC168474) Strongylocentrotus purpuratus clone R3-35A12, WOR...    44   7.4    1
(AC166009) Neofelis nebulosa clone CH87-29M3, WORKING DRAFT ...    44   7.4    1
(AC015623) Homo sapiens clone RP11-45J16, WORKING DRAFT SEQU...    44   7.4    1
(CR858773) Pongo abelii mRNA; cDNA DKFZp468H0713 (from clone...    44   7.4    1
(AK310943) Homo sapiens cDNA, FLJ17985.                            44   7.4    1
(AY410557) Pan troglodytes CACNB2 gene, VIRTUAL TRANSCRIPT, ...    44   7.4    1
(AY410556) Homo sapiens CACNB2 gene, VIRTUAL TRANSCRIPT, par...    44   7.4    1
(AY404089) Pan troglodytes SACS gene, VIRTUAL TRANSCRIPT, pa...    44   7.4    1
(AY404088) Homo sapiens SACS gene, VIRTUAL TRANSCRIPT, parti...    44   7.4    1
(FT220017) Rattus norvegicus DNA, BAC clone: RNB2-440G23, 3'...    44   7.4    1
(FT180780) Rattus norvegicus DNA, BAC clone: RNB2-385B05, 3'...    44   7.4    1
(FH626432) CHO_OF4955xc24f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.4    1
(EK026924) 1092955374547 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(AG993137) Saccharomyces pastorianus DNA, clone: C1556-R22.        44   7.4    1
(CU955110) Brassica napus GSS, clone JBnB162J23, end read, p...    44   7.4    1
(CU392481) Equus caballus GSS, BAC clone CH241-326G3, T7 end...    44   7.4    1
(ES225714) MpSG_ag4_A14 Myzus persicae, tobacco lineage, aph...    44   7.4    1
(DV959923) SB03046A1A04.f1 Normalized subtracted Keck-Tagu L...    44   7.4    1
(DV946986) SB03006B2E12.f1 Normalized subtracted Keck-Tagu L...    44   7.4    1
(DT633036) EST1147967 Normalized pine embryo library, Lib_D ...    44   7.4    1
(DR685604) EST1075681 Normalized pine embryo library, Lib_D ...    44   7.4    1
(DR157007) HESC2_72_G02.g1_A035 NIH_MGC_258 Homo sapiens cDN...    44   7.4    1
(AM761856) Oopsacas minuta EST, 5' end sequence, clone IL0AF...    44   7.4    1
(AM761788) Oopsacas minuta EST, 5' end sequence, clone IL0AF...    44   7.4    1
(CN359238) 17000423991336 GRN_ES Homo sapiens cDNA 5', mRNA ...    44   7.4    1
(CN359237) 17000532580824 GRN_ES Homo sapiens cDNA 5', mRNA ...    44   7.4    1
(CK230915) ILLUMIGEN_MCQ_1300 Katze_MMPL2 Macaca mulatta cDN...    44   7.4    1
(CJ408489) Molgula tectiformis cDNA, gonad clone:mtgd031p17,...    44   7.4    1
(CJ403414) Molgula tectiformis cDNA, gonad clone:mtgd007i16,...    44   7.4    1
(CJ403306) Molgula tectiformis cDNA, gonad clone:mtgd007d16,...    44   7.4    1
(CJ400725) Molgula tectiformis cDNA, gonad clone:mtgd013a01,...    44   7.4    1
(CJ386558) Molgula tectiformis cDNA, gastrula/neurula clone:...    44   7.4    1
(CJ385066) Molgula tectiformis cDNA, gastrula/neurula clone:...    44   7.4    1
(CJ381486) Molgula tectiformis cDNA, gastrula/neurula clone:...    44   7.4    1
(CJ379271) Molgula tectiformis cDNA, gastrula/neurula clone:...    44   7.4    1
(CJ377741) Molgula tectiformis cDNA, gastrula/neurula clone:...    44   7.4    1
(CJ360538) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   7.4    1
(CJ357809) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   7.4    1
(CJ357186) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   7.4    1
(CJ356108) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   7.4    1
(CJ344737) Molgula tectiformis cDNA, embryo just before hatc...    44   7.4    1
(CJ341159) Molgula tectiformis cDNA, embryo just before hatc...    44   7.4    1
(CJ340224) Molgula tectiformis cDNA, embryo just before hatc...    44   7.4    1
(CJ339127) Molgula tectiformis cDNA, embryo just before hatc...    44   7.4    1
(CI210448) Oryza sativa Japonica Group cDNA, clone: 038-M052...    44   7.4    1
(CI208516) Oryza sativa Japonica Group cDNA, clone: 038-M027...    44   7.4    1
(CI178506) Oryza sativa Japonica Group cDNA, clone: 034-M052...    44   7.4    1
(CI171158) Oryza sativa Japonica Group cDNA, clone: 033-M037...    44   7.4    1
(AJ925571) Theileria annulata EST, clone tam006f10_q1k.            44   7.4    1
(BU902860) AGENCOURT_10180149 NIH_MGC_71 Homo sapiens cDNA c...    44   7.4    1
(BQ345420) MR4-NT0141-170401-217-g06 NT0141 Homo sapiens cDN...    44   7.4    1
(BP251818) Homo sapiens cDNA clone: HPR09346, Sugano cDNA li...    44   7.4    1
(BM461688) AGENCOURT_6418181 NIH_MGC_71 Homo sapiens cDNA cl...    44   7.4    1
(BM457998) AGENCOURT_6411526 NIH_MGC_71 Homo sapiens cDNA cl...    44   7.4    1
(FK669812) 871 cowpea buchid larval midgut cDNA library Call...    44   7.4    1
(EY865462) CM30-C1-401-078-G12-CT.F Sweet lime leaf, infecte...    44   7.4    1
(BX950229) Methanococcus maripaludis strain S2, complete seq...    44   7.4    1
(AM180355) Clostridium difficile 630 complete genome.              44   7.4    1
(AX345768) Sequence 839 from Patent WO0200928.                     36   7.4    2
(AX339152) Sequence 19 from Patent WO0176451.                      36   7.4    2
(CT737154) Zebrafish DNA sequence from clone DKEY-168A14 in ...    40   8.1    3
(AC084434) Homo sapiens chromosome 11 clone RP11-1083I3 map ...    40   9.8    2

>(C90643) Dictyostelium discoideum slug cDNA, clone SSI262.
          Length = 599

 Score =  527 bits (266), Expect(3) = 0.0
 Identities = 266/266 (100%)
 Strand = Plus / Plus


Query: 356 ggttgtaatgggaattattttagcatttgatttaggaatattaatttttatcatagtatt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggttgtaatgggaattattttagcatttgatttaggaatattaatttttatcatagtatt 301


Query: 416 ttatatagttaataaagttaaatttggtgatcttataaaatcattaaatcaacaatatca 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttatatagttaataaagttaaatttggtgatcttataaaatcattaaatcaacaatatca 361


Query: 476 acatagatcaatatcattttcttctgcatcttttttccttttcaaaattaaaatgcatta 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 acatagatcaatatcattttcttctgcatcttttttccttttcaaaattaaaatgcatta 421


Query: 536 taatatcataggtgtagccaatgatactccatttggtccaacctctgaaacttcaccact 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taatatcataggtgtagccaatgatactccatttggtccaacctctgaaacttcaccact 481


Query: 596 catcgcatccgtacataatgtttagg 621
           ||||||||||||||||||||||||||
Sbjct: 482 catcgcatccgtacataatgtttagg 507

 Score =  244 bits (123), Expect(3) = 0.0
 Identities = 123/123 (100%)
 Strand = Plus / Plus


Query: 157 ggggtgatggatatacattagactctaaatttccaaatcaattaaatggtgttattacac 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  ggggtgatggatatacattagactctaaatttccaaatcaattaaatggtgttattacac 102


Query: 217 atcaagaatttaatagtattatacaagaatttcactcaacagtaaatagactcccaacac 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 atcaagaatttaatagtattatacaagaatttcactcaacagtaaatagactcccaacac 162


Query: 277 ttc 279
           |||
Sbjct: 163 ttc 165

 Score = 52.0 bits (26), Expect(3) = 0.0
 Identities = 26/26 (100%)
 Strand = Plus / Plus


Query: 649 atagatttaaattaaaactataatgc 674
           ||||||||||||||||||||||||||
Sbjct: 527 atagatttaaattaaaactataatgc 552

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 638,957,470
Number of extensions: 42443284
Number of successful extensions: 3721461
Number of sequences better than 10.0: 196
Length of query: 711
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 687
Effective length of database: 102,084,959,077
Effective search space: 70132366885899
Effective search space used: 70132366885899
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05423-1 (Contig-U05423-1Q) /CSM_Contig/Contig-U05423-1Q.Seq.d
         (711 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 729,277,498
Number of extensions: 10454439
Number of successful extensions: 23484
Number of sequences better than 10.0: 0
Number of HSP's gapped: 23474
Number of HSP's successfully gapped: 0
Length of query: 237
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 112
Effective length of database: 652,629,681
Effective search space: 73094524272
Effective search space used: 73094524272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.54  gvh: 0.34  alm: 0.15  top: 0.67  tms: 0.13  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: nuclear
	 16.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U05423-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0