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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05410-1
Contig ID Contig-U05410-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05410-1 (Contig-U05410-1Q) /CSM_Contig/Contig-U05410-1Q.Seq.d
ATATAATATAATTTAATATATATTTACAGAAATTTTTTGATTGGTCTTCC
ATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAA
ATTAAATAAATAAAATGTTTTTAAGTCTTCTTATATTACTTAGTTATGCA
TTAGGGTTTGTTTTTTGTGTTGTCTGTTTAGCATGTGGGTTATATTATTC
AGAATTGGTCGAAGAACATGCAACAGTAGCAAAAAGATGGATTAAGTATA
CTATGTGGTTTGTAATGGGAATTATATTTTTGTTAGGAATATTTGAAGAT
TTAGATTTTACAAGTTTATTATTTAGTTTTATAGGTCATTGCTGTTATTA
TACATTATTAACAGAATTTCCATTTGTAACTTTAACTGGTTATAAATTTA
TATTAAGCGTTTTATCATTTATAATTAGTCATATTTCATGGTTTATTTAT
TTTAGAAATACAGAGAATTGGTATCNATTTGGCGAAATCATTGCAATATT
TACATTTTGTGTTTGGTTAATTCCATTAATATTCTTTATTTCATTAGCTG
CTAATGATAATTCTTTACAATGGCAAATAGCTATTCATCACATTCAAATT
CAAATATAATTGGAGTTGATAGCGAATTTACAAAAAAGAAATCAAGAATA
AGTGTTTTAAAATCAATGTTTGCGTGGGCAAAAGAAAAGACCTCTGATAT
TACTGGTCAAAAATCAATGAAACATTATTATTAAAAAGAAGAAAAGAAAA
ATAATACAA
Gap no gap
Contig length 759
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 201528
End point 200765
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05410
List of clone(s) 

est1=SSI133E,1,760
Translated Amino Acid sequence 
i*ynliyiyrnfliglpskkkkkkkkkkkkkk*n*INKMFLSLLILLSYALGFVFCVVCL
ACGLYYSELVEEHATVAKRWIKYTMWFVMGIIFLLGIFEDLDFTSLLFSFIGHCCYYTLL
TEFPFVTLTGYKFILSVLSFIISHISWFIYFRNTENWYXFGEIIAIFTFCVWLIPLIFFI
SLAANDNSLQWQIAIHHIQIQI*lelianlqkrnqe*vf*nqclrgqkkrplillvknq*
niiikkkkrkiiq
Translated Amino Acid sequence (All Frames) 
Frame A:
i*ynliyiyrnfliglpskkkkkkkkkkkkkk*n*INKMFLSLLILLSYALGFVFCVVCL
ACGLYYSELVEEHATVAKRWIKYTMWFVMGIIFLLGIFEDLDFTSLLFSFIGHCCYYTLL
TEFPFVTLTGYKFILSVLSFIISHISWFIYFRNTENWYXFGEIIAIFTFCVWLIPLIFFI
SLAANDNSLQWQIAIHHIQIQI*lelianlqkrnqe*vf*nqclrgqkkrplillvknq*
niiikkkkrkiiq


Frame B:
ynii*yifteif*lvfhqkkkkkkkkkkkkknkik*ikcf*vflyylvmh*glffvlsv*
hvgyiiqnwsknmqq*qkdglsilcgl*welyfc*eylki*ilqvyylvl*viaviihy*
qnfhl*l*lvinly*afyhl*lvifhglfileiqrigixlakslqylhfvfg*fh*yslf
h*llmiilyngk*lfitfkfkynws**riykkeiknkcfkinvcvgkrkdl*yywskine
tlllkrrkek*y


Frame C:
ii*fniylqkffdwssikkkkkkkkkkkkkkiklnk*nvfkssyit*lcirvcflcclfs
mwvilfrigrrtcnsskkmd*vyyvvcngnyifvrni*rfrfykfii*fyrsllllyiin
risicnfnwl*iyikrfiiyn*syfmvylf*kyrelvsiwrnhcniyilclvnsinilyf
isc***fftmansysshsnsniigvdseftkkksrisvlksmfawakektsditgqksmk
hyy*keekknnt
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05410-1 (Contig-U05410-1Q)
/CSM_Contig/Contig-U05410-1Q.Seq.d
         (759 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05410-1 (Contig-U05410-1Q) /CSM_Contig/Conti...  1255  0.0
Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U10784-1 (Contig-U10784-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U04993-1 (Contig-U04993-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12512-1 (Contig-U12512-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U11746-1 (Contig-U11746-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U10276-1 (Contig-U10276-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U07060-1 (Contig-U07060-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U06680-1 (Contig-U06680-1Q) /CSM_Contig/Conti...    38  0.013

>Contig-U05410-1 (Contig-U05410-1Q) /CSM_Contig/Contig-U05410-1Q.Seq.d
          Length = 759

 Score = 1255 bits (633), Expect = 0.0
 Identities = 636/636 (100%)
 Strand = Plus / Plus

                                                                       
Query: 97  taaaattaaataaataaaatgtttttaagtcttcttatattacttagttatgcattaggg 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  taaaattaaataaataaaatgtttttaagtcttcttatattacttagttatgcattaggg 156

                                                                       
Query: 157 tttgttttttgtgttgtctgtttagcatgtgggttatattattcagaattggtcgaagaa 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tttgttttttgtgttgtctgtttagcatgtgggttatattattcagaattggtcgaagaa 216

                                                                       
Query: 217 catgcaacagtagcaaaaagatggattaagtatactatgtggtttgtaatgggaattata 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 catgcaacagtagcaaaaagatggattaagtatactatgtggtttgtaatgggaattata 276

                                                                       
Query: 277 tttttgttaggaatatttgaagatttagattttacaagtttattatttagttttataggt 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttttgttaggaatatttgaagatttagattttacaagtttattatttagttttataggt 336

                                                                       
Query: 337 cattgctgttattatacattattaacagaatttccatttgtaactttaactggttataaa 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cattgctgttattatacattattaacagaatttccatttgtaactttaactggttataaa 396

                                                                       
Query: 397 tttatattaagcgttttatcatttataattagtcatatttcatggtttatttattttaga 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tttatattaagcgttttatcatttataattagtcatatttcatggtttatttattttaga 456

                                                                       
Query: 457 aatacagagaattggtatcnatttggcgaaatcattgcaatatttacattttgtgtttgg 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatacagagaattggtatcnatttggcgaaatcattgcaatatttacattttgtgtttgg 516

                                                                       
Query: 517 ttaattccattaatattctttatttcattagctgctaatgataattctttacaatggcaa 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttaattccattaatattctttatttcattagctgctaatgataattctttacaatggcaa 576

                                                                       
Query: 577 atagctattcatcacattcaaattcaaatataattggagttgatagcgaatttacaaaaa 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atagctattcatcacattcaaattcaaatataattggagttgatagcgaatttacaaaaa 636

                                                                       
Query: 637 agaaatcaagaataagtgttttaaaatcaatgtttgcgtgggcaaaagaaaagacctctg 696
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agaaatcaagaataagtgttttaaaatcaatgtttgcgtgggcaaaagaaaagacctctg 696

                                               
Query: 697 atattactggtcaaaaatcaatgaaacattattatt 732
           ||||||||||||||||||||||||||||||||||||
Sbjct: 697 atattactggtcaaaaatcaatgaaacattattatt 732


 Score =  105 bits (53), Expect = 7e-23
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                               
Query: 1  atataatataatttaatatatatttacagaaattttttgattggtcttccatc 53
          |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atataatataatttaatatatatttacagaaattttttgattggtcttccatc 53


>Contig-U11267-1 (Contig-U11267-1Q) /CSM_Contig/Contig-U11267-1Q.Seq.d
          Length = 1604

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 97   taaaattaaataaataaaatgtttt 121
            |||||| ||||||||||||||||||
Sbjct: 1558 taaaatgaaataaataaaatgtttt 1582


>Contig-U10784-1 (Contig-U10784-1Q) /CSM_Contig/Contig-U10784-1Q.Seq.d
          Length = 2735

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 592 attcaaattcaaatataatt 611
           ||||||||||||||||||||
Sbjct: 244 attcaaattcaaatataatt 263


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 592  attcaaattcaaatataatt 611
            ||||||||||||||||||||
Sbjct: 1362 attcaaattcaaatataatt 1381


 Score = 32.2 bits (16), Expect = 0.83
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                  
Query: 1  atataatataatttaatatatatt 24
          ||||||||||||| ||||| ||||
Sbjct: 93 atataatataattcaatatttatt 70


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,322
Number of Sequences: 6905
Number of extensions: 21322
Number of successful extensions: 2878
Number of sequences better than 10.0: 358
length of query: 759
length of database: 5,674,871
effective HSP length: 16
effective length of query: 743
effective length of database: 5,564,391
effective search space: 4134342513
effective search space used: 4134342513
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.19
Homology vs DNA 
Query= Contig-U05410-1 (Contig-U05410-1Q) /CSM_Contig/Contig-U05410-1Q.Seq.d
         (759 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90137) Dictyostelium discoideum slug cDNA, clone SSI133.        327   0.0    4
(AU073712) Dictyostelium discoideum slug cDNA, clone SSI133.      165   2e-78  3
(CU856001) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.13   1
(ER535755) 1093015839183 Global-Ocean-Sampling_GS-35-01-01-1...    32   0.18   3
(BX248577) Zebrafish DNA sequence from clone CH211-162H21 in...    40   0.31   4
(AC216365) Solanum lycopersicum chromosome 12 clone LE_HBa-1...    38   0.32   5
(CR450795) Zebrafish DNA sequence from clone CH211-203J19 in...    38   0.34   4
(BX248581) Zebrafish DNA sequence from clone CH211-208O6 in ...    38   0.42   6
(CR854844) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.43   7
(FM995165) Candida castellii complete mitochondrial genome, ...    48   0.51   1
(AM428816) Vitis vinifera contig VV78X010815.4, whole genome...    48   0.51   1
(AC159610) Rhinolophus ferrumequinum clone VMRC7-85B22, WORK...    48   0.51   1
(AC156967) Bos taurus clone CH240-68H3, WORKING DRAFT SEQUEN...    48   0.51   1
(AC123189) Rattus norvegicus clone CH230-128H9, *** SEQUENCI...    48   0.51   1
(AC114836) Rattus norvegicus clone CH230-219B19, WORKING DRA...    48   0.51   1
(AC231166) Bos taurus clone CH240-68I22, WORKING DRAFT SEQUE...    48   0.51   1
(DU049432) 149288 Tomato HindIII BAC Library Solanum lycoper...    48   0.51   1
(BH678721) BOMDQ71TF BO_2_3_KB Brassica oleracea genomic clo...    48   0.51   1
(EX612746) 255380911 Pea aphid whole body normalized full le...    48   0.51   1
(EJ577180) 1092960119140 Global-Ocean-Sampling_GS-29-01-01-1...    32   0.53   3
(EJ856220) 1093017942233 Global-Ocean-Sampling_GS-30-02-01-1...    32   0.55   3
(BX470098) Zebrafish DNA sequence from clone DKEY-148D16 in ...    34   0.56   7
(EJ516126) 1092955094397 Global-Ocean-Sampling_GS-29-01-01-1...    32   0.56   3
(AC109781) Homo sapiens 3 BAC RP11-317G9 (Roswell Park Cance...    44   0.63   3
(AC098885) Mus musculus BAC clone RP23-122L17 from 5, comple...    42   0.65   4
(EK460700) 1095469264969 Global-Ocean-Sampling_GS-32-01-01-1...    32   0.68   3
(AC121475) Rattus norvegicus clone CH230-114I20, *** SEQUENC...    40   0.87   5
(BX247944) Zebrafish DNA sequence from clone CH211-227L2 in ...    42   1.0    4
(AL928707) Zebrafish DNA sequence from clone CH211-207M2 in ...    36   1.1    2
(AM475640) Vitis vinifera contig VV78X003579.10, whole genom...    34   1.2    5
(FF333676) 280454224 Pea aphid whole body normalized full le...    40   1.3    2
(AC004915) Homo sapiens PAC clone RP5-888A21 from 7, complet...    40   1.7    3
(AC155126) Bos taurus clone CH240-42P13, WORKING DRAFT SEQUE...    40   1.8    4
(CU550716) Zebrafish DNA sequence from clone CH73-221F6 in l...    46   2.0    1
(CR318652) Zebrafish DNA sequence from clone CH211-128O18 in...    46   2.0    1
(BX005197) Mouse DNA sequence from clone RP23-216H19 on chro...    46   2.0    1
(AC127688) Mus musculus BAC clone RP24-200F13 from chromosom...    46   2.0    1
(AC157482) Pan troglodytes BAC clone CH251-366D6 from chromo...    46   2.0    1
(U72146) Camptotheca acuminata 3-hydroxy-3-methylglutaryl co...    46   2.0    1
(AM426650) Vitis vinifera contig VV78X244043.10, whole genom...    46   2.0    1
(AC212850) Populus trichocarpa clone POP046-C03, complete se...    46   2.0    1
(EF650228) Eudioctria albius 28S ribosomal RNA gene, partial...    46   2.0    1
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         46   2.0    1
(AC135444) Rattus norvegicus clone CH230-368P15, WORKING DRA...    46   2.0    1
(AC109377) Rattus norvegicus clone CH230-159A16, *** SEQUENC...    46   2.0    1
(FP236211) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.0    1
(CU929912) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.0    1
(CU861901) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.0    1
(CU694817) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.0    1
(CU656034) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.0    1
(CT025901) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.0    1
(AC173273) Bos taurus clone CH240-308J16, WORKING DRAFT SEQU...    46   2.0    1
(BH548193) BOGFK88TR BOGF Brassica oleracea genomic clone BO...    46   2.0    1
(DX523350) GH_MBb0042F08f GH_MBb Gossypium hirsutum genomic ...    46   2.0    1
(DU182417) 1098553680280 CHORI-243 Ovis aries genomic clone ...    46   2.0    1
(AG970923) Drosophila simulans DNA, clone: DSM1-009L13.F.fa,...    46   2.0    1
(CZ451950) MCF733d03TF Human MCF7 breast cancer cell line li...    46   2.0    1
(AG510503) Mus musculus molossinus DNA, clone:MSMg01-414C04....    46   2.0    1
(AG477663) Mus musculus molossinus DNA, clone:MSMg01-371B01....    46   2.0    1
(DY684367) TTEAU80THB Tetrahymena thermophila EST library, c...    46   2.0    1
(DY683353) TTEAJ79THC Tetrahymena thermophila EST library, c...    46   2.0    1
(CX585397) TTE00035161 Amplicon Express - Conjugative Form T...    46   2.0    1
(CX571517) TTE00017542 Amplicon Express - Conjugative Form T...    46   2.0    1
(CX571479) TTE00018534 Amplicon Express - Conjugative Form T...    46   2.0    1
(CV839440) ID0ADD11AA04RM1 ID0ADD Acyrthosiphon pisum cDNA c...    46   2.0    1
(CN762108) ID0AAA3CD10RM1 ApMS Acyrthosiphon pisum cDNA clon...    46   2.0    1
(CN757597) ID0AAA1DH02FM1 ApMS Acyrthosiphon pisum cDNA clon...    46   2.0    1
(CN755631) ID0AAA16BF02RM1 ApMS Acyrthosiphon pisum cDNA clo...    46   2.0    1
(CN584538) USDA-FP_127606 Acyrthosiphon pisum, Pea Aphid Acy...    46   2.0    1
(BQ973893) QHI14C03.yg.ab1 QH_ABCDI sunflower RHA801 Heliant...    46   2.0    1
(FF573694) TTEG136THC Tetrahymena thermophila conjugation cD...    46   2.0    1
(FF337617) 280466742 Pea aphid whole body normalized full le...    46   2.0    1
(FF330821) 280443318 Pea aphid whole body normalized full le...    46   2.0    1
(FF328869) 280437912 Pea aphid whole body normalized full le...    46   2.0    1
(FF328148) 280435434 Pea aphid whole body normalized full le...    46   2.0    1
(FF325910) 280427844 Pea aphid whole body normalized full le...    46   2.0    1
(FF321416) 280410980 Pea aphid whole body normalized full le...    46   2.0    1
(FF321341) 280412664 Pea aphid whole body normalized full le...    46   2.0    1
(FF315312) 279408119 Pea aphid whole body normalized full le...    46   2.0    1
(FF315147) 279403724 Pea aphid whole body normalized full le...    46   2.0    1
(FF314470) 279396417 Pea aphid whole body normalized full le...    46   2.0    1
(FF313930) 279392207 Pea aphid whole body normalized full le...    46   2.0    1
(FF313725) 279388315 Pea aphid whole body normalized full le...    46   2.0    1
(FF311165) 279381398 Pea aphid whole body normalized full le...    46   2.0    1
(FF309664) 279375392 Pea aphid whole body normalized full le...    46   2.0    1
(FF307165) 279368147 Pea aphid whole body normalized full le...    46   2.0    1
(FF304031) 279357517 Pea aphid whole body normalized full le...    46   2.0    1
(FF301463) 279347280 Pea aphid whole body normalized full le...    46   2.0    1
(FF294192) 279299100 Pea aphid whole body normalized full le...    46   2.0    1
(FC476109) CAXH8116.fwd CAXH Mnemiopsis leidyi whole animal ...    46   2.0    1
(EY889901) TS27-C2-300-068-H03-CT.F Sunki mandarin bark, gre...    46   2.0    1
(EX654374) 256869041 Pea aphid whole body normalized full le...    46   2.0    1
(EX652833) 256774528 Pea aphid whole body normalized full le...    46   2.0    1
(EX651968) 256757359 Pea aphid whole body normalized full le...    46   2.0    1
(EX650573) 256744040 Pea aphid whole body normalized full le...    46   2.0    1
(EX642557) 256643286 Pea aphid whole body normalized full le...    46   2.0    1
(EX638545) 256623091 Pea aphid whole body normalized full le...    46   2.0    1
(EX637068) 256614549 Pea aphid whole body normalized full le...    46   2.0    1
(EX636125) 256605117 Pea aphid whole body normalized full le...    46   2.0    1
(EX634976) 256599566 Pea aphid whole body normalized full le...    46   2.0    1
(EX634937) 256597896 Pea aphid whole body normalized full le...    46   2.0    1
(EX632204) 256335449 Pea aphid whole body normalized full le...    46   2.0    1
(EX628801) 255455586 Pea aphid whole body normalized full le...    46   2.0    1
(EX623975) 255426428 Pea aphid whole body normalized full le...    46   2.0    1
(EX623153) 255423890 Pea aphid whole body normalized full le...    46   2.0    1
(EX621880) 255417004 Pea aphid whole body normalized full le...    46   2.0    1
(EX621874) 255418144 Pea aphid whole body normalized full le...    46   2.0    1
(EX620290) 255412917 Pea aphid whole body normalized full le...    46   2.0    1
(EX615499) 255392172 Pea aphid whole body normalized full le...    46   2.0    1
(EX615045) 255390835 Pea aphid whole body normalized full le...    46   2.0    1
(EX610441) 255374776 Pea aphid whole body normalized full le...    46   2.0    1
(EX610021) 255371557 Pea aphid whole body normalized full le...    46   2.0    1
(EX604833) 255348119 Pea aphid whole body normalized full le...    46   2.0    1
(EX603987) 255343670 Pea aphid whole body normalized full le...    46   2.0    1
(EX602309) 255328627 Pea aphid whole body normalized full le...    46   2.0    1
(AC068287) Homo sapiens BAC clone RP11-532L9 from 2, complet...    36   2.8    5
(U02970) Prototheca wickerhamii 263-11 complete mitochondria...    40   3.0    5
(CR314319) mte1-37N22FM1 BAC end, cultivar Jemalong A17 of M...    36   3.3    2
(AC229907) Oryza minuta clone OM__Ba0209P10, *** SEQUENCING ...    42   3.3    5
(AC093177) Drosophila melanogaster, chromosome 2L, region 36...    40   3.7    5
(AC184088) Populus trichocarpa clone Pop1-58J8, complete seq...    40   3.8    3
(AC105419) Homo sapiens BAC clone RP11-502O9 from 2, complet...    34   3.8    6
(AQ288634) nbxb0017F13f CUGI Rice BAC Library Oryza sativa J...    36   3.8    3
(CR381542) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   3.8    2
(CR759781) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   3.9    2
(AC147238) Mus musculus BAC clone RP23-377L7 from chromosome...    32   3.9    2
(CU468091) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   3.9    2
(AC123035) Mus musculus BAC clone RP24-497E22 from 10, compl...    32   3.9    2
(CU571127) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   3.9    2
(AC079614) Homo sapiens BAC clone RP11-424I4 from 2, complet...    34   3.9    2
(CT583671) Zebrafish DNA sequence from clone DKEY-122A15 in ...    32   4.1    2
(FP312776) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   4.3    6
(AX346573) Sequence 1644 from Patent WO0200928.                    34   4.6    2
(CR759818) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   4.6    4
(CU457494) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.7    6
(AZ502036) 1M0341F09F Mouse 10kb plasmid UUGC1M library Mus ...    32   5.2    2
(EH701138) CCIS13254.b1_K02.ab1 CCI(LMS) chicory Cichorium i...    32   5.2    2
(CU463258) Zebrafish DNA sequence from clone DKEY-169A9 in l...    40   5.7    5
(CR376801) Zebrafish DNA sequence from clone CH211-13K18 in ...    38   6.0    4
(AC022853) Homo sapiens chromosome 11 clone RP11-304B20 map ...    40   6.2    5
(CR352327) Zebrafish DNA sequence from clone CH211-194C22 in...    40   6.2    4
(AL844502) Plasmodium falciparum 3D7 chromosome 3.                 32   6.3    10
(CT030737) Zebrafish DNA sequence from clone CH211-130P15 in...    36   6.8    4
(CU278516) Zebrafish DNA sequence from clone DKEY-42D18 in l...    44   6.9    5
(CR759883) Zebrafish DNA sequence from clone DKEY-56K23 in l...    34   7.0    7
(AM451799) Vitis vinifera, whole genome shotgun sequence, co...    34   7.1    4
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    44   7.1    6
(CU633668) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.2    4
(CR388158) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   7.3    4
(AC225475) Medicago truncatula clone mth2-189o5, complete se...    38   7.7    3
(AM108333) Lutzomyia longipalpis EST clone NSFM-121d06, sequ...    36   7.7    2
(AC015496) Homo sapiens clone RP11-21E5, WORKING DRAFT SEQUE...    36   7.8    3
(DQ058007) Danio rerio leucine zipper and ICAT homologous do...    44   7.9    1
(CU693448) Zebrafish DNA sequence from clone CH1073-314G16 i...    44   7.9    1
(CU302205) Zebrafish DNA sequence from clone DKEY-79L8 in li...    44   7.9    1
(CR855206) Zebrafish DNA sequence from clone DKEY-87O12 in l...    44   7.9    1
(CR405711) Zebrafish DNA sequence from clone DKEY-166C18 in ...    44   7.9    1
(BX957240) Zebrafish DNA sequence from clone DKEY-39A4 in li...    44   7.9    1
(BX649492) Zebrafish DNA sequence from clone DKEY-13P3 in li...    44   7.9    1
(BX649333) Zebrafish DNA sequence from clone DKEY-200F3 in l...    44   7.9    1
(BX571850) Zebrafish DNA sequence from clone DKEY-259L18 in ...    44   7.9    1
(BX511190) Zebrafish DNA sequence from clone RP71-80D18 in l...    44   7.9    1
(BX000462) Zebrafish DNA sequence from clone DKEY-114F6 in l...    44   7.9    1
(BC075997) Danio rerio leucine zipper and CTNNBIP1 domain co...    44   7.9    1
(AC154851) Mus musculus BAC clone RP23-28P10 from chromosome...    44   7.9    1
(AC153357) Mus musculus BAC clone RP24-124N8 from chromosome...    44   7.9    1
(AC140381) Mus musculus BAC clone RP23-176M4 from 10, comple...    44   7.9    1
(AC125538) Mus musculus BAC clone RP24-178B2 from chromosome...    44   7.9    1
(AC186556) Pan troglodytes BAC clone CH251-295F15 from chrom...    44   7.9    1
(AC183669) Pan troglodytes BAC clone CH251-549L23 from chrom...    44   7.9    1
(AC148696) Macaca mulatta Major Histocompatibility Complex B...    44   7.9    1
(AC147978) Pan troglodytes BAC clone CH251-94E4 from 7, comp...    44   7.9    1
(AC142341) Pan troglodytes BAC clone RP43-43C1 from chromoso...    44   7.9    1
(AB128049) Macaca mulatta genes, MHC class I region, partial...    44   7.9    1
(EU852811) Saccharomyces pastorianus Weihenstephan 34/70 mit...    44   7.9    1
(CR382132) Yarrowia lipolytica strain CLIB122 chromosome F c...    44   7.9    1
(AM486047) Vitis vinifera, whole genome shotgun sequence, co...    44   7.9    1
(AM454382) Vitis vinifera contig VV78X008621.10, whole genom...    44   7.9    1
(AM442624) Vitis vinifera contig VV78X100643.8, whole genome...    44   7.9    1
(AF114933) Saccharomyces bayanus CBS395 small subunit riboso...    44   7.9    1
(AF114927) Saccharomyces pastorianus CBS1538 small subunit r...    44   7.9    1
(AF114918) Saccharomyces pastorianus CBS1503 small subunit r...    44   7.9    1
(AF114904) Saccharomyces pastorianus CBS1513 small subunit r...    44   7.9    1
(AF114901) Saccharomyces bayanus CBS380 small subunit riboso...    44   7.9    1
(AB182459) Saccharomyces pastorianus mitochondrial gene for ...    44   7.9    1
(AB182457) Saccharomyces bayanus mitochondrial gene for smal...    44   7.9    1
(DL236052) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              44   7.9    1
(DL234391) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              44   7.9    1
(DD220902) NOVEL COMPOSITIONS AND METHODS IN CANCER ASSOCIAT...    44   7.9    1
(BD160575) Primer for synthesizing full-length cDNA and use ...    44   7.9    1
(AX883863) Sequence 18768 from Patent EP1074617.                   44   7.9    1
(AX695971) Sequence 1598 from Patent WO03008583.                   44   7.9    1
(GN071042) Sequence 1598 from Patent EP2034030.                    44   7.9    1
(AL844505) Plasmodium falciparum 3D7 chromosome 6.                 44   7.9    1
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    44   7.9    1
(AL731858) Human DNA sequence from clone RP11-396A22 on chro...    44   7.9    1
(AL354704) Human DNA sequence from clone RP11-630H9 on chrom...    44   7.9    1
(AK024304) Homo sapiens cDNA FLJ14242 fis, clone OVARC1000678.     44   7.9    1
(AC104814) Homo sapiens BAC clone RP11-683C4 from 4, complet...    44   7.9    1
(AC103736) Homo sapiens chromosome 11, clone RP11-703E9, com...    44   7.9    1
(AC103681) Homo sapiens chromosome 11, clone CTD-2560E9, com...    44   7.9    1
(AC093790) Homo sapiens BAC clone RP11-250F14 from 4, comple...    44   7.9    1
(AC092590) Homo sapiens BAC clone RP11-45K3 from 7, complete...    44   7.9    1
(AC013602) Homo sapiens, clone RP11-10C6, complete sequence.       44   7.9    1
(AC009975) Homo sapiens BAC clone RP11-460M2 from 2, complet...    44   7.9    1
(AC004909) Homo sapiens PAC clone RP5-856O24 from 7, complet...    44   7.9    1
(AC157224) Bos taurus clone CH240-46J7, WORKING DRAFT SEQUEN...    44   7.9    1
(AC153648) Mus musculus chromosome 13 clone RP24-342B18, WOR...    44   7.9    1
(AC150448) Pan troglodytes clone CH251-35E6, WORKING DRAFT S...    44   7.9    1
(AC139393) Rattus norvegicus clone CH230-49L12, WORKING DRAF...    44   7.9    1
(AC132511) Rattus norvegicus clone CH230-322E17, *** SEQUENC...    44   7.9    1
(AC128445) Rattus norvegicus clone CH230-120A9, *** SEQUENCI...    44   7.9    1
(AC127062) Rattus norvegicus clone CH230-40M6, WORKING DRAFT...    44   7.9    1
(AC116081) Rattus norvegicus chromosome 18 clone CH230-170J1...    44   7.9    1
(AC115399) Rattus norvegicus chromosome 18 clone CH230-215B1...    44   7.9    1
(AC114025) Rattus norvegicus clone CH230-33E7, WORKING DRAFT...    44   7.9    1
(AC106528) Rattus norvegicus clone CH230-40B7, *** SEQUENCIN...    44   7.9    1
(AC103220) Rattus norvegicus clone CH230-48M6, *** SEQUENCIN...    44   7.9    1
(AC098543) Rattus norvegicus clone CH230-102M19, *** SEQUENC...    44   7.9    1
(AC095553) Rattus norvegicus clone CH230-8B22, *** SEQUENCIN...    44   7.9    1
(CU914391) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.9    1
(CU856173) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.9    1
(CU855511) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.9    1
(CU695317) Brassica rapa subsp. pekinensis clone KBrH094N07,...    44   7.9    1
(CU694834) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.9    1
(CU469174) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.9    1
(AC094305) Rattus norvegicus clone CH230-3F23, WORKING DRAFT...    44   7.9    1
(AC084869) Homo sapiens chromosome RPCI-11 clone RP11-508E4,...    44   7.9    1
(CU234145) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.9    1
(CR354546) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   7.9    1
(BX927301) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   7.9    1
(AC230539) Bos taurus clone CH240-505I19, WORKING DRAFT SEQU...    44   7.9    1
(AC224073) Bos taurus clone CH240-450O23, WORKING DRAFT SEQU...    44   7.9    1
(AC219999) Bos taurus clone CH240-316J9, WORKING DRAFT SEQUE...    44   7.9    1
(AC218592) Bos taurus clone CH240-311E16, WORKING DRAFT SEQU...    44   7.9    1
(AC191445) Macaca mulatta clone CH250-212N23, WORKING DRAFT ...    44   7.9    1
(AC185902) Bos taurus clone RP42-135G24, WORKING DRAFT SEQUE...    44   7.9    1
(AC168172) Bos taurus clone CH240-198B13, WORKING DRAFT SEQU...    44   7.9    1
(AC015621) Homo sapiens clone RP11-45J4, LOW-PASS SEQUENCE S...    44   7.9    1
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    44   7.9    1
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    44   7.9    1
(BH486029) BOHQX89TR BOHQ Brassica oleracea genomic clone BO...    44   7.9    1
(BH379272) AG-ND-121C5.TF ND-TAM Anopheles gambiae genomic c...    44   7.9    1
(FT169790) Rattus norvegicus DNA, BAC clone: RNB2-367P15, 5'...    44   7.9    1
(AQ739606) HS_5381_B2_H12_T7A RPCI-11 Human Male BAC Library...    44   7.9    1
(FI039608) CHO_OF6463xe17f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   7.9    1
(FH349847) CHO_OF4655xi02r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.9    1
(FH349775) CHO_OF4655xi02f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.9    1
(ET212797) MUGQ_CH252P414B19T7_CP791_080 CHORI-252 Vervet Mo...    44   7.9    1
(AL737895) Danio rerio genomic clone DKEY-19O18, genomic sur...    44   7.9    1
(EJ418364) 1093012204555 Global-Ocean-Sampling_GS-28-01-01-1...    44   7.9    1
(EI679531) SB_BBd01-D20.F SB_BBd Sorghum bicolor genomic 5',...    44   7.9    1
(EI457191) PV_GBa0059D03.r PV_GBa Phaseolus vulgaris genomic...    44   7.9    1
(EI431391) PV_GBa0023H13.f PV_GBa Phaseolus vulgaris genomic...    44   7.9    1
(EI429825) PV_GBa0021F18.r PV_GBa Phaseolus vulgaris genomic...    44   7.9    1
(EI418535) PV_GBa0005F20.r PV_GBa Phaseolus vulgaris genomic...    44   7.9    1
(EI416487) PV_GBa0002E23.r PV_GBa Phaseolus vulgaris genomic...    44   7.9    1
(DU096930) 110150 Tomato HindIII BAC Library Solanum lycoper...    44   7.9    1
(DU054319) 144312 Tomato HindIII BAC Library Solanum lycoper...    44   7.9    1
(CZ449919) MCF730h06TF Human MCF7 breast cancer cell line li...    44   7.9    1
(CZ020424) CH240_514B05.TV CHORI-240 Bos taurus genomic clon...    44   7.9    1
(CW224977) 104_662_11204106_148_37205_073 Sorghum methylatio...    44   7.9    1
(CW224976) 104_662_11204106_116_37206_073 Sorghum methylatio...    44   7.9    1
(CW058541) 104_301_10518794_115_30164 Sorghum methylation fi...    44   7.9    1
(CU748398) A BAC library has been constructed from PN40024 g...    44   7.9    1
(CU178457) Equus caballus GSS, BAC clone CH241-311B11, T7 en...    44   7.9    1
(CT194820) Sus scrofa genomic clone CH242-160L15, genomic su...    44   7.9    1
(CR048429) Reverse strand read from insert in 5'HPRT inserti...    44   7.9    1
(AG870107) Oryza sativa Indica Group genomic DNA, BAC end se...    44   7.9    1
(CL706752) OR_BBa0024F05.r OR_BBa Oryza nivara genomic clone...    44   7.9    1
(CL505514) SAIL_751_F09.v1 SAIL Collection Arabidopsis thali...    44   7.9    1
(CL501343) SAIL_696_B04.v1 SAIL Collection Arabidopsis thali...    44   7.9    1
(CC288125) CH261-55L11_RM1.1 CH261 Gallus gallus genomic clo...    44   7.9    1
(BZ520391) BOMRN72TF BO_2_3_KB Brassica oleracea genomic clo...    44   7.9    1
(BH829155) BACPP28-D22.y Pristionchus pacificus BAC ends Pri...    44   7.9    1
(AG350207) Mus musculus molossinus DNA, clone:MSMg01-146M01....    44   7.9    1
(EH691447) CCIM3627.b1_F19.ab1 CCI(LMS) chicory Cichorium in...    44   7.9    1
(EH577091) FDR202-P00055-DEPE-R_E02 FDR202 Danio rerio cDNA ...    44   7.9    1
(EH569349) FDR202-P00034-DEPE-R_C06 FDR202 Danio rerio cDNA ...    44   7.9    1
(EH561442) FDR202-P00012-DEPE-R_K03 FDR202 Danio rerio cDNA ...    44   7.9    1
(EH555990) FDR202-P00055-DEPE-F_E02 FDR202 Danio rerio cDNA ...    44   7.9    1
(EH548231) FDR202-P00034-DEPE-F_C06 FDR202 Danio rerio cDNA ...    44   7.9    1
(EH472163) FDR103-P00041-DEPE-R_G23 FDR103 Danio rerio cDNA ...    44   7.9    1
(EH469990) FDR103-P00035-DEPE-R_F19 FDR103 Danio rerio cDNA ...    44   7.9    1
(EH468265) FDR103-P00030-DEPE-R_J17 FDR103 Danio rerio cDNA ...    44   7.9    1
(EH446304) FDR103-P00041-DEPE-F_G23 FDR103 Danio rerio cDNA ...    44   7.9    1
(EH444104) FDR103-P00035-DEPE-F_F19 FDR103 Danio rerio cDNA ...    44   7.9    1
(EB853891) 7852131 KZ68 Danio rerio cDNA clone 2844986, mRNA...    44   7.9    1
(DY931409) CHAZ6322.b1_D21.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY931301) CHAZ6223.b1_M19.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY930575) CHAZ5552.b1_P19.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY930366) CHAZ5361.b1_B22.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY927718) CHAZ2425.b1_B07.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY927572) CHAZ2273.b1_B18.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY927543) CHAZ2244.b1_H10.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY927491) CHAZ2191.b1_M20.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY927219) CHAZ1912.b1_P22.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY927140) CHAZ1832.b1_P02.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY919553) CHAY2912.b1_O08.ab1 CHA(XYZ) common wild sunflowe...    44   7.9    1
(DY305465) KN0AAM1AD02RM1 SLH Citrus sinensis cDNA 5', mRNA ...    44   7.9    1
(DN704473) CLJ53-F02.x1d-t SHGC-CLJ Gasterosteus aculeatus c...    44   7.9    1
(DN109805) 1107434 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence.    44   7.9    1
(DN109458) 1107050 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence.    44   7.9    1
(DC210370) Plasmodium berghei strain ANKA cDNA clone:MG01108...    44   7.9    1
(DC197586) Plasmodium berghei cDNA clone:LV005626, liver sta...    44   7.9    1
(DB780280) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.9    1
(DB762581) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.9    1
(BU494601) PfESToab65c07.y1 Plasmodium falciparum 3D7 asexua...    44   7.9    1
(BU034465) QHJ4C18.yg.ab1 QH_EFGHJ sunflower RHA280 Helianth...    44   7.9    1
(BQ978617) QHI5J17.yg.ab1 QH_ABCDI sunflower RHA801 Helianth...    44   7.9    1
(BQ974336) QHI15G01.yg.ab1 QH_ABCDI sunflower RHA801 Heliant...    44   7.9    1
(BQ600569) MI-P-E7-agy-f-01-1-UM.s1 MI-P-E7 Sus scrofa cDNA ...    44   7.9    1
(BF408130) UI-R-BJ1-aup-g-01-0-UI.s2 UI-R-BJ1 Rattus norvegi...    44   7.9    1
(FG086271) CMRC-FF-IH0-acd-k-03-0-CMRC.r1 Ceratitis capitata...    44   7.9    1
(FC922604) KN0AAM1AD02RM1 SLH Citrus sinensis cDNA clone KN0...    44   7.9    1
(EX158557) DR_UNI_FL58_F10_R 4-week-old gonad (TLL) Danio re...    44   7.9    1
(AC112882) Rattus norvegicus clone CH230-81I24, *** SEQUENCI...    36   8.2    5
(CR769784) Zebrafish DNA sequence from clone DKEY-3N10 in li...    40   8.4    4
(AM475270) Vitis vinifera contig VV78X140103.15, whole genom...    40   8.6    2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    36   9.0    4
(AC133052) Rattus norvegicus clone CH230-225L10, WORKING DRA...    36   10.0   4

>(C90137) Dictyostelium discoideum slug cDNA, clone SSI133.
          Length = 571

 Score =  327 bits (165), Expect(4) = 0.0
 Identities = 165/165 (100%)
 Strand = Plus / Plus


Query: 568 caatggcaaatagctattcatcacattcaaattcaaatataattggagttgatagcgaat 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caatggcaaatagctattcatcacattcaaattcaaatataattggagttgatagcgaat 429


Query: 628 ttacaaaaaagaaatcaagaataagtgttttaaaatcaatgtttgcgtgggcaaaagaaa 687
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttacaaaaaagaaatcaagaataagtgttttaaaatcaatgtttgcgtgggcaaaagaaa 489


Query: 688 agacctctgatattactggtcaaaaatcaatgaaacattattatt 732
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agacctctgatattactggtcaaaaatcaatgaaacattattatt 534

 Score =  220 bits (111), Expect(4) = 0.0
 Identities = 113/114 (99%)
 Strand = Plus / Plus


Query: 455 gaaatacagagaattggtatcnatttggcgaaatcattgcaatatttacattttgtgttt 514
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaaatacagagaattggtatccatttggcgaaatcattgcaatatttacattttgtgttt 315


Query: 515 ggttaattccattaatattctttatttcattagctgctaatgataattctttac 568
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggttaattccattaatattctttatttcattagctgctaatgataattctttac 369

 Score =  141 bits (71), Expect(4) = 0.0
 Identities = 71/71 (100%)
 Strand = Plus / Plus


Query: 200 cagaattggtcgaagaacatgcaacagtagcaaaaagatggattaagtatactatgtggt 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagaattggtcgaagaacatgcaacagtagcaaaaagatggattaagtatactatgtggt 60


Query: 260 ttgtaatggga 270
           |||||||||||
Sbjct: 61  ttgtaatggga 71

 Score = 58.0 bits (29), Expect(4) = 0.0
 Identities = 29/29 (100%)
 Strand = Plus / Plus


Query: 361 acagaatttccatttgtaactttaactgg 389
           |||||||||||||||||||||||||||||
Sbjct: 162 acagaatttccatttgtaactttaactgg 190

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 799,216,759
Number of extensions: 54122856
Number of successful extensions: 4932070
Number of sequences better than 10.0: 324
Length of query: 759
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 735
Effective length of database: 102,084,959,077
Effective search space: 75032444921595
Effective search space used: 75032444921595
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05410-1 (Contig-U05410-1Q) /CSM_Contig/Contig-U05410-1Q.Seq.d
         (759 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041231_1(BC041231|pid:none) Xenopus laevis testis expressed ge...   112   2e-23
(Q6UWH6) RecName: Full=Protein TEX261;  &AY358783_1(AY358783|pid...   105   2e-21
AK303594_1(AK303594|pid:none) Homo sapiens cDNA FLJ56309 complet...   105   2e-21
BC133312_1(BC133312|pid:none) Bos taurus testis expressed 261, m...   104   3e-21
(Q5RFE0) RecName: Full=Protein TEX261;  &CR857218_1(CR857218|pid...   102   1e-20
(P38869) RecName: Full=Protein SVP26; AltName: Full=Sed5 compart...   101   2e-20
(Q58DA4) RecName: Full=Protein TEX261;  &BT021693_1(BT021693|pid...   101   2e-20
BC095136_1(BC095136|pid:none) Danio rerio zgc:110022, mRNA (cDNA...    99   1e-19
BX842680_13(BX842680|pid:none) Neurospora crassa DNA linkage gro...    94   5e-18
FN392322_233(FN392322|pid:none) Pichia pastoris GS115 chromosome...    92   1e-17
BT077100_1(BT077100|pid:none) Caligus rogercresseyi clone crog-e...    91   3e-17
CU633438_621(CU633438|pid:none) Podospora anserina genomic DNA c...    90   7e-17
AM270414_18(AM270414|pid:none) Aspergillus niger contig An18c022...    90   7e-17
CP000497_366(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    89   1e-16
CR382121_384(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    89   1e-16
FM992688_1071(FM992688|pid:none) Candida dubliniensis CD36 chrom...    89   1e-16
AM989989_48(AM989989|pid:none) Zygosaccharomyces rouxii strain C...    89   2e-16
AP007155_10(AP007155|pid:none) Aspergillus oryzae RIB40 genomic ...    87   6e-16
AE013599_3797(AE013599|pid:none) Drosophila melanogaster chromos...    87   8e-16
AY222900_1(AY222900|pid:none) Schistosoma japonicum SJCHGC05758 ...    84   6e-15
AK315543_1(AK315543|pid:none) Homo sapiens cDNA, FLJ96610, Homo ...    80   5e-14
AB027827_1(AB027827|pid:none) Schizosaccharomyces pombe gene for...    72   2e-11
CP000590_226(CP000590|pid:none) Ostreococcus lucimarinus CCE9901...    68   3e-10
AF483067_1(AF483067|pid:none) Boltenia villosa tex261 protein-li...    68   4e-10
AK074840_1(AK074840|pid:none) Homo sapiens cDNA FLJ90359 fis, cl...    59   1e-07
U76419_1(U76419|pid:none) Rattus norvegicus steroidogenic acute ...    58   4e-07
AM494964_222(AM494964|pid:none) Leishmania braziliensis chromoso...    44   0.006
AM502245_131(AM502245|pid:none) Leishmania infantum chromosome 27.     44   0.007
CP000282_2920(CP000282|pid:none) Saccharophagus degradans 2-40, ...    40   0.062
AP009608_741(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    37   0.52
CP000847_345(CP000847|pid:none) Rickettsia akari str. Hartford, ...    37   0.68
CP000053_1027(CP000053|pid:none) Rickettsia felis URRWXCal2, com...    37   0.68
CP000771_549(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1...    37   0.68
CP000409_286(CP000409|pid:none) Rickettsia canadensis str. McKie...    36   1.2
CP001227_269(CP001227|pid:none) Rickettsia peacockii str. Rustic...    36   1.2
AE006914_341(AE006914|pid:none) Rickettsia conorii str. Malish 7...    36   1.5
AM114193_2492(AM114193|pid:none) Uncultured methanogenic archaeo...    35   2.0
AE008384_2114(AE008384|pid:none) Methanosarcina mazei strain Goe...    35   2.0
CP000683_254(CP000683|pid:none) Rickettsia massiliae MTU5, compl...    34   4.4
L10850_1(L10850|pid:none) Herpetomonas muscarum kinetoplast cyto...    34   4.4
L10848_1(L10848|pid:none) Herpetomonas megaseliae kinetoplast cy...    34   4.4
CP000940_145(CP000940|pid:none) Clostridium botulinum B1 str. Ok...    34   5.8
AE015928_175(AE015928|pid:none) Bacteroides thetaiotaomicron VPI...    34   5.8
A25877(A25877)cytochrome-c oxidase (EC 1.9.3.1) chain III - Crit...    34   5.8
CP000683_492(CP000683|pid:none) Rickettsia massiliae MTU5, compl...    34   5.8
AJ938182_2243(AJ938182|pid:none) Staphylococcus aureus RF122 com...    33   7.6
AE017226_1278(AE017226|pid:none) Treponema denticola ATCC 35405,...    33   7.6
A48298(A48298)sodium channel homolog - jellyfish (Cyanea capilla...    33   7.6
AP009324_2349(AP009324|pid:none) Staphylococcus aureus subsp. au...    33   7.6
CP001612_275(CP001612|pid:none) Rickettsia africae ESF-5, comple...    33   7.6
EU155442_1(EU155442|pid:none) Plectroctena ugandensis cytochrome...    33   9.9
BA000033_2285(BA000033|pid:none) Staphylococcus aureus subsp. au...    33   9.9
AE017355_3383(AE017355|pid:none) Bacillus thuringiensis serovar ...    33   9.9
AP009351_2276(AP009351|pid:none) Staphylococcus aureus subsp. au...    33   9.9
CP000485_3126(CP000485|pid:none) Bacillus thuringiensis str. Al ...    33   9.9

>BC041231_1(BC041231|pid:none) Xenopus laevis testis expressed gene
           261, mRNA (cDNA clone MGC:52748 IMAGE:4684015), complete
           cds.
          Length = 196

 Score =  112 bits (279), Expect = 2e-23
 Identities = 53/134 (39%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = +1

Query: 163 FCVVCLACGLYY-SELVEEHATVAKRWIKYTMWFVMGIIFLLGIFEDLDFTSLLFSFIGH 339
           F  + +A GLYY +EL+EE+     R IKY +WF  G++  L +FE      ++     +
Sbjct: 18  FVTLAIAAGLYYLAELIEEYTVATSRIIKYMIWFSTGVLICLYLFEKFPIIMIVVGLFTN 77

Query: 340 CCYYTLLTEFPFVTLTGYKFILSVLSFIISHISWFIYFRNTENWYXFGEIIAIFTFCVWL 519
             Y+ LL  FPF+ LT   FILS +  +++H   F YF   + +Y F E++  FTFC+WL
Sbjct: 78  VVYFGLLQTFPFIMLTSPNFILSCVLVVLNHYLAFQYF--ADEYYPFSEVLTYFTFCLWL 135

Query: 520 IPLIFFISLAANDN 561
           IP  FF+SL+A +N
Sbjct: 136 IPFSFFVSLSAGEN 149

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,050,949,804
Number of extensions: 19146185
Number of successful extensions: 41154
Number of sequences better than 10.0: 55
Number of HSP's gapped: 41073
Number of HSP's successfully gapped: 55
Length of query: 253
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 127
Effective length of database: 649,361,233
Effective search space: 82468876591
Effective search space used: 82468876591
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.98  gvh: 0.87  alm: 0.17  top: 0.43  tms: 0.27  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U05410-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0