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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05401-1
Contig ID Contig-U05401-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05401-1 (Contig-U05401-1Q) /CSM_Contig/Contig-U05401-1Q.Seq.d
AAATAATAATAAATTTTTATTACCAGGAGTTTTAATAAGTGGATTTACAA
TTTTAAGTGGATTAACAGCAACAACAGTATCATGTGATACAATTAATAAA
GATAAAGATGCAACAGTTGTTACACATCATGTTGAAATTAAAAATGTTCC
AACAACAACACAAAAGATTCAAAAAGTTGCAGGTGTTACAACAATGGGTG
GTGCATTAGGATATTGTTGTGGTATTGCCACTAGAAAGATTGGTACAATG
GTATTAGTTTTCGTTGGTGCCATTTTCATTGTAGTTCAATTATTATCTTC
AAAAGGTTATATCGTTGTTAAATGGGATAAAGTTAGTGAAGAACATTCAC
CAAAATTCACAAAAGAAAAAAGACGTCAATACATTCGTTCCTTTTATAAT
TTATTAACTAGTAATTTACCATTTAAAGTTGGTTTTGGTAGTGGTTTCCT
TTTAGGTTTTAAACAATAAACAATAAACA
Gap no gap
Contig length 479
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 8348291
End point 8347812
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05401
List of clone(s) 

est1=SSH846E,1,480
Translated Amino Acid sequence 
NNNKFLLPGVLISGFTILSGLTATTVSCDTINKDKDATVVTHHVEIKNVPTTTQKIQKVA
GVTTMGGALGYCCGIATRKIGTMVLVFVGAIFIVVQLLSSKGYIVVKWDKVSEEHSPKFT
KEKRRQYIRSFYNLLTSNLPFKVGFGSGFLLGFKQ*tin
Translated Amino Acid sequence (All Frames) 
Frame A:
k***ifitrsfnkwiynfkwinsnnsim*yn**r*rcnscytsc*n*kcsnnntkdsksc
rcynngwcirillwych*kdwyngisfrwchfhcssiiifkrlyrc*mg*s**rtftkih
krkktsihsfll*fin**fti*swfw*wfpfrf*tinnk


Frame B:
NNNKFLLPGVLISGFTILSGLTATTVSCDTINKDKDATVVTHHVEIKNVPTTTQKIQKVA
GVTTMGGALGYCCGIATRKIGTMVLVFVGAIFIVVQLLSSKGYIVVKWDKVSEEHSPKFT
KEKRRQYIRSFYNLLTSNLPFKVGFGSGFLLGFKQ*tin


Frame C:
iiinfyyqef**vdlqf*vd*qqqqyhviqlikikmqqllhimlklkmfqqqhkrfkklq
vlqqwvvh*divvvlplerlvqwy*fslvpfsl*fnyylqkvisllngiklvknihqnsq
kkkdvntfvpfiiy*lviyhlklvlvvvsf*vlnnkq*t
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05401-1 (Contig-U05401-1Q)
/CSM_Contig/Contig-U05401-1Q.Seq.d
         (479 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05401-1 (Contig-U05401-1Q) /CSM_Contig/Conti...   950  0.0
Contig-U05711-1 (Contig-U05711-1Q) /CSM_Contig/Conti...    42  5e-04
Contig-U03047-1 (Contig-U03047-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U11158-1 (Contig-U11158-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U09638-1 (Contig-U09638-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U06420-1 (Contig-U06420-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U05441-1 (Contig-U05441-1Q) /CSM_Contig/Conti...    36  0.033
Contig-U14081-1 (Contig-U14081-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U13811-1 (Contig-U13811-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U12605-1 (Contig-U12605-1Q) /CSM_Contig/Conti...    34  0.13

>Contig-U05401-1 (Contig-U05401-1Q) /CSM_Contig/Contig-U05401-1Q.Seq.d
          Length = 479

 Score =  950 bits (479), Expect = 0.0
 Identities = 479/479 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataataataaatttttattaccaggagttttaataagtggatttacaattttaagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaataataataaatttttattaccaggagttttaataagtggatttacaattttaagtgg 60

                                                                       
Query: 61  attaacagcaacaacagtatcatgtgatacaattaataaagataaagatgcaacagttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attaacagcaacaacagtatcatgtgatacaattaataaagataaagatgcaacagttgt 120

                                                                       
Query: 121 tacacatcatgttgaaattaaaaatgttccaacaacaacacaaaagattcaaaaagttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacacatcatgttgaaattaaaaatgttccaacaacaacacaaaagattcaaaaagttgc 180

                                                                       
Query: 181 aggtgttacaacaatgggtggtgcattaggatattgttgtggtattgccactagaaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtgttacaacaatgggtggtgcattaggatattgttgtggtattgccactagaaagat 240

                                                                       
Query: 241 tggtacaatggtattagttttcgttggtgccattttcattgtagttcaattattatcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggtacaatggtattagttttcgttggtgccattttcattgtagttcaattattatcttc 300

                                                                       
Query: 301 aaaaggttatatcgttgttaaatgggataaagttagtgaagaacattcaccaaaattcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaggttatatcgttgttaaatgggataaagttagtgaagaacattcaccaaaattcac 360

                                                                       
Query: 361 aaaagaaaaaagacgtcaatacattcgttccttttataatttattaactagtaatttacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaagaaaaaagacgtcaatacattcgttccttttataatttattaactagtaatttacc 420

                                                                      
Query: 421 atttaaagttggttttggtagtggtttccttttaggttttaaacaataaacaataaaca 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atttaaagttggttttggtagtggtttccttttaggttttaaacaataaacaataaaca 479


>Contig-U05711-1 (Contig-U05711-1Q) /CSM_Contig/Contig-U05711-1Q.Seq.d
          Length = 1056

 Score = 42.1 bits (21), Expect = 5e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 194 atgggtggtgcattaggatattgtt 218
           ||||||||||||||||||| |||||
Sbjct: 148 atgggtggtgcattaggatgttgtt 172


>Contig-U03047-1 (Contig-U03047-1Q) /CSM_Contig/Contig-U03047-1Q.Seq.d
          Length = 1604

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 7   taataaatttttattacca 25
           |||||||||||||||||||
Sbjct: 218 taataaatttttattacca 200


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,530
Number of Sequences: 6905
Number of extensions: 27530
Number of successful extensions: 2121
Number of sequences better than 10.0: 551
length of query: 479
length of database: 5,674,871
effective HSP length: 16
effective length of query: 463
effective length of database: 5,564,391
effective search space: 2576313033
effective search space used: 2576313033
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.19
Homology vs DNA 
Query= Contig-U05401-1 (Contig-U05401-1Q) /CSM_Contig/Contig-U05401-1Q.Seq.d
         (479 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115608) Dictyostelium discoideum chromosome 2 map 6199819...   950   0.0    1
(AU038540) Dictyostelium discoideum slug cDNA, clone SSH846.      950   0.0    1
(U31631) Dictyostelium discoideum class II apurinic/apyrimid...   688   0.0    3
(AM428625) Vitis vinifera contig VV78X048623.11, whole genom...    38   0.011  5
(AP004954) Lotus japonicus genomic DNA, chromosome 4, clone:...    40   0.055  4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.059  11
(AP010297) Lotus japonicus genomic DNA, chromosome 6, clone:...    38   0.12   4
(AC189893) Cavia porcellus clone CH234-213E3, WORKING DRAFT ...    38   0.16   6
(AC235245) Glycine max strain Williams 82 clone GM_WBb0033D0...    40   0.17   6
(AC235232) Glycine max strain Williams 82 clone GM_WBb0027H2...    40   0.17   6
(AC201469) Strongylocentrotus purpuratus clone R3-3047H12, W...    48   0.21   4
(CP000382) Clostridium novyi NT, complete genome.                  34   0.21   16
(EB441391) KN6B.109A22F.060106T7 KN6B Nicotiana tabacum cDNA...    36   0.23   2
(ET675261) CHO_OF467xf11f2.ab1 CHO_OF Nicotiana tabacum geno...    36   0.24   2
(FG191816) AGN_PNL218bf1_b4.trimmed.seq AGN_PNL Nicotiana ta...    36   0.24   2
(AC189808) Cavia porcellus clone CH234-216M11, WORKING DRAFT...    38   0.25   4
(AC066615) Homo sapiens chromosome 15 clone RP11-90J19 map 1...    40   0.26   4
(AC201212) Strongylocentrotus purpuratus clone R3-15D9, WORK...    48   0.32   1
(ER831235) PPTCX31TRB Solanum tuberosum RHPOTKEY BAC ends So...    48   0.32   1
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       32   0.36   14
(FH656842) CHO_OF4405xk03f1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   0.53   2
(AX458490) Sequence 36 from Patent WO0246454.                      38   0.59   3
(CR361569) Zebrafish DNA sequence from clone CH211-99I20 in ...    36   0.66   4
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.69   11
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    34   0.72   13
(AC199648) Cavia porcellus clone CH234-19M13, WORKING DRAFT ...    38   0.81   3
(AC196878) Cavia porcellus clone CH234-512F8, WORKING DRAFT ...    38   0.84   5
(AC008092) Drosophila melanogaster clone BACR22F22, complete...    42   0.85   3
(FH742181) CHO_OF5161xh11r1.ab1 CHO_OF5 Nicotiana tabacum ge...    32   0.89   2
(DB777662) Apis mellifera head cDNA, RIKEN full-length enric...    32   0.90   2
(DB766089) Apis mellifera head cDNA, RIKEN full-length enric...    32   0.90   2
(DB758288) Apis mellifera head cDNA, RIKEN full-length enric...    32   0.90   2
(DB778109) Apis mellifera head cDNA, RIKEN full-length enric...    32   0.90   2
(DB772072) Apis mellifera head cDNA, RIKEN full-length enric...    32   0.90   2
(AC018230) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    42   0.92   2
(DJ000976) Prediction method of carcinogenicity of chemicals.      30   0.92   3
(DD492700) Prediction method of carcinogenicity of chemicals.      30   0.92   3
(EC822032) SME00006858 esmbsro2 Sawyeria marylandensis cDNA,...    36   0.94   3
(CR318654) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   1.1    5
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    32   1.1    8
(EC823090) SME00005434 esmbsro2 Sawyeria marylandensis cDNA,...    36   1.1    3
(BX897661) Zebrafish DNA sequence from clone DKEY-261N7 in l...    38   1.1    5
(EC823533) SME00001158 esmbsro2 Sawyeria marylandensis cDNA,...    36   1.2    3
(EC823786) SME00004187 esmbsro2 Sawyeria marylandensis cDNA,...    36   1.2    3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   1.2    10
(AC182501) Cavia porcellus clone CH234-157J7, WORKING DRAFT ...    46   1.2    1
(AC178123) Strongylocentrotus purpuratus clone R3-3074L14, W...    46   1.2    1
(AC175990) Strongylocentrotus purpuratus clone R3-17I8, WORK...    46   1.2    1
(BH522408) BOHBP02TF BOHB Brassica oleracea genomic clone BO...    46   1.2    1
(BH464406) BOHEK88TR BOHE Brassica oleracea genomic clone BO...    46   1.2    1
(BH426541) BOHJS65TF BOHJ Brassica oleracea genomic clone BO...    46   1.2    1
(BH998892) oei15a05.b1 B.oleracea002 Brassica oleracea genom...    46   1.2    1
(BH995077) oek41d11.g1 B.oleracea002 Brassica oleracea genom...    46   1.2    1
(BH695461) BOHXC65TF BO_2_3_KB Brassica oleracea genomic clo...    46   1.2    1
(BH577661) BOGRN64TR BOGR Brassica oleracea genomic clone BO...    46   1.2    1
(BH566503) BOHEN50TR BOHE Brassica oleracea genomic clone BO...    46   1.2    1
(DT767916) EST1201765 Aquilegia cDNA library Aquilegia formo...    46   1.2    1
(GO300501) AGSB695.rev AGSB Teleopsis dalmanni Late larval e...    46   1.2    1
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    30   1.3    9
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    38   1.4    9
(DE004955) Branchiostoma floridae DNA, clone: CH302-009G16.R...    40   1.4    2
(BX510364) Zebrafish DNA sequence from clone CH211-81A17 in ...    36   1.4    6
(AC198537) Cavia porcellus clone CH234-402D19, WORKING DRAFT...    38   1.5    2
(CX593688) CT020006A10C09 Equine Articular Cartilage cDNA Li...    30   1.6    3
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         38   1.7    14
(BX072538) Zebrafish DNA sequence from clone DKEY-217K21 in ...    44   1.7    5
(BX548071) Zebrafish DNA sequence from clone DKEY-25L23 in l...    36   1.8    7
(FJ685653) Eriogyna pyretorum mitochondrion, complete genome.      36   1.9    3
(CR855309) Zebrafish DNA sequence from clone DKEY-35B7 in li...    44   1.9    5
(BG662564) DRAAAA02 Rat DRG Library Rattus norvegicus cDNA c...    30   1.9    3
(BY385394) Mus musculus blastocyst blastocyst cDNA, RIKEN fu...    30   2.0    3
(EI290310) GM_WBc0011L11.f GM_WBc Glycine max genomic clone ...    36   2.1    2
(BM195998) C0320F12-3 NIA Mouse Undifferentiated ES Cell cDN...    30   2.1    3
(CP000049) Borrelia turicatae 91E135, complete genome.             38   2.2    11
(BE623331) ut99e07.x1 Soares_mammary_gland_NMLMG Mus musculu...    30   2.3    3
(CV677867) vr45c11.k2 Knowles Solter mouse 2 cell Mus muscul...    30   2.3    3
(CP001301) Borrelia garinii PBr plasmid PBr_lp25, complete s...    32   2.4    6
(AC187644) Glycine max clone gmp1-13f22, WORKING DRAFT SEQUE...    40   2.4    5
(AC137440) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    32   2.4    2
(AC111731) Rattus norvegicus clone CH230-161O22, *** SEQUENC...    32   2.4    2
(BM197659) C0309G03-3 NIA Mouse Undifferentiated ES Cell cDN...    30   2.5    3
(AA859009) UI-R-A0-bi-d-09-0-UI.s1 UI-R-A0 Rattus norvegicus...    30   2.5    3
(CX601244) CT02029A1D11 Equine Articular Cartilage cDNA Libr...    30   2.5    3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    30   2.5    9
(BG084687) H3103G12-5 NIA Mouse 15K cDNA Clone Set Mus muscu...    30   2.5    3
(BG071846) H3103G12-3 NIA Mouse 15K cDNA Clone Set Mus muscu...    30   2.5    3
(EL962606) mouse_006887 mouse eyeball cDNA Library Mus muscu...    30   2.5    3
(CU856174) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   2.5    5
(CX217686) MNS31936 Mouse Neurosphere Normalized cDNA librar...    30   2.6    3
(BE655681) UI-M-BH0-ajp-c-10-0-UI.r1 NIH_BMAP_M_S1 Mus muscu...    30   2.7    3
(BX522426) RZPD Mus musculus cDNA clone IMAGp998N111391 = IM...    30   2.7    3
(AC105399) Homo sapiens BAC clone RP11-715P7 from 2, complet...    40   2.8    3
(EF204913) Pleurotus ostreatus mitochondrion, complete genome.     32   3.2    5
(AP007827) Lotus japonicus genomic DNA, chromosome 6, clone:...    38   3.2    3
(CD549373) B0298C04-3 NIA Mouse Embryonic Germ Cell cDNA Lib...    30   3.2    3
(EJ182730) 1092344134034 Global-Ocean-Sampling_GS-27-01-01-1...    34   3.3    2
(FH902219) CHO_ONF001xe12f2.ab1 CHO_ONF Nicotiana tabacum ge...    34   3.3    2
(AC191915) Spermophilus tridecemlineatus clone VMRC20-363H20...    34   3.3    6
(CA526921) 8023-74 Mouse E14.5 retina lambda ZAP II Library ...    30   3.4    3
(BE108193) UI-R-BS1-ayw-b-03-0-UI.s1 UI-R-BS1 Rattus norvegi...    30   3.4    3
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    36   3.4    10
(GE885592) 1112934330626 BABEVCEREB-C-01-1-7KB Papio anubis ...    30   3.4    3
(AC192740) Pan troglodytes BAC clone CH251-35A11 from chromo...    36   3.5    4
(AC215585) Procavia capensis clone CH280-59J13, WORKING DRAF...    38   3.6    4
(CB578428) AMGNNUC:URRG1-00033-C12-A urrg1 (14046) Rattus no...    30   3.6    3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    32   3.8    13
(CR385024) Zebrafish DNA sequence from clone CH211-202G4 in ...    36   3.8    6
(DV367352) NACBH74TF Aedes aegypti infected with Brugia Mala...    38   4.0    2
(AC146552) Medicago truncatula chromosome 8 clone mth2-9d1, ...    36   4.0    5
(AL840640) Mouse DNA sequence from clone RP23-83J23 on chrom...    42   4.0    5
(GE855267) 1112869953599 BABEVCEREB-C-01-1-7KB Papio anubis ...    30   4.0    3
(GE851202) 1112869916544 BABEVCEREB-C-01-1-7KB Papio anubis ...    30   4.0    3
(GE871429) 1112870117806 BABEVCEREB-C-01-1-7KB Papio anubis ...    30   4.1    3
(AY458634) Uncultured marine bacterium 314 clone EBAC750-09G...    34   4.3    4
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   4.3    8
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    30   4.3    9
(BX957306) Zebrafish DNA sequence from clone DKEY-119H24 in ...    42   4.4    3
(AL845365) Zebrafish DNA sequence from clone DKEY-150H13 in ...    40   4.4    4
(CU571310) Zebrafish DNA sequence from clone CH211-34C18 in ...    36   4.5    4
(CO041698) UI-M-FI0-cau-k-21-0-UI.s1 NIH_BMAP_FI0 Mus muscul...    30   4.7    3
(EI416573) PV_GBa0002G20.f PV_GBa Phaseolus vulgaris genomic...    34   4.8    3
(BU611390) UI-M-FI0-cau-k-21-0-UI.r1 NIH_BMAP_FI0 Mus muscul...    30   4.9    3
(CR394570) Zebrafish DNA sequence from clone DKEYP-9D9 in li...    40   4.9    5
(BX005056) Zebrafish DNA sequence from clone CH211-77A11 in ...    44   4.9    5
(CR388024) Zebrafish DNA sequence from clone CH211-151B13 in...    36   4.9    3
(GE892283) 1112934497980 BABEVCEREB-C-01-1-7KB Papio anubis ...    30   4.9    3
(AY863213) Smittium culisetae mitochondrion, complete genome.      34   4.9    5
(CU463154) Zebrafish DNA sequence from clone CH211-162F9 in ...    44   4.9    1
(CR538727) Zebrafish DNA sequence from clone DKEY-9G20 in li...    44   4.9    1
(BX664715) Zebrafish DNA sequence from clone DKEY-83M2 in li...    44   4.9    1
(BX640464) Zebrafish DNA sequence from clone DKEY-22M8 in li...    44   4.9    1
(AL929183) Zebrafish DNA sequence from clone CH211-142M8 in ...    44   4.9    1
(BV069926) S212P60437FA3.T0 CZECHII/Ei Mus musculus STS geno...    44   4.9    1
(CT030206) Mouse DNA sequence from clone RP23-100I15 on chro...    44   4.9    1
(AF162137) Mus musculus WNT-2 gene, partial cds; putative an...    44   4.9    1
(AC161826) Mus musculus 6 BAC RP23-411G8 (Roswell Park Cance...    44   4.9    1
(AC159250) Mus musculus BAC clone RP24-196J19 from chromosom...    44   4.9    1
(AY863212) Rhizopus oryzae mitochondrion, complete genome.         44   4.9    1
(CQ869821) Sequence 242 from Patent WO2004074320.                  44   4.9    1
(AX345886) Sequence 957 from Patent WO0200928.                     44   4.9    1
(GC701829) Sequence 17074 from patent US 6812339.                  44   4.9    1
(AL353052) Human DNA sequence from clone RP5-865N13 on chrom...    44   4.9    1
(AL136418) Human chromosome 14 DNA sequence BAC R-596D21 of ...    44   4.9    1
(AC009225) Homo sapiens BAC clone RP11-156A1 from 2, complet...    44   4.9    1
(AC129646) Rattus norvegicus clone CH230-27G11, WORKING DRAF...    44   4.9    1
(AC120671) Rattus norvegicus clone CH230-30C8, *** SEQUENCIN...    44   4.9    1
(AL139054) Human chromosome 14 DNA sequence *** IN PROGRESS ...    44   4.9    1
(AC230877) Bos taurus clone CH240-496N12, WORKING DRAFT SEQU...    44   4.9    1
(AC196748) Citrus sinensis clone CSRBBa-013G11, WORKING DRAF...    44   4.9    1
(AC176554) Strongylocentrotus purpuratus clone R3-3076G18, W...    44   4.9    1
(AC175996) Strongylocentrotus purpuratus clone R3-17K8, WORK...    44   4.9    1
(AC175984) Strongylocentrotus purpuratus clone R3-17H6, WORK...    44   4.9    1
(ET102311) QM0AAB20CB11RM1 CCER1 Citrus clementina genomic c...    44   4.9    1
(ET102010) QM0AAB20AB11RM1 CCER1 Citrus clementina genomic c...    44   4.9    1
(ET091472) QM0AAA16DG01FM1 CCL1 Citrus clementina genomic cl...    44   4.9    1
(AQ142377) HS_3076_B1_H01_MF CIT Approved Human Genomic Sper...    44   4.9    1
(ED335745) AUAC-aay38b11.b1 Ascaris suum whole genome shotgu...    44   4.9    1
(ED309444) AUAC-aap42e09.b1 Ascaris suum whole genome shotgu...    44   4.9    1
(CE425972) tigr-gss-dog-17000362826822 Dog Library Canis lup...    44   4.9    1
(CC494396) CH240_329N9.T7 CHORI-240 Bos taurus genomic clone...    44   4.9    1
(BX240724) Danio rerio genomic clone DKEY-245L7, genomic sur...    44   4.9    1
(BX190925) Danio rerio genomic clone DKEY-202M15, genomic su...    44   4.9    1
(EH305735) UAHYP_18B_R_B04 UaHyphae_ARS Uromyces appendicula...    44   4.9    1
(EH305733) UAHYP_18B_F_B04 UaHyphae_ARS Uromyces appendicula...    44   4.9    1
(EH303386) UAHYP_14C_R_C04 UaHyphae_ARS Uromyces appendicula...    44   4.9    1
(EH303372) UAHYP_14C_F_C04 UaHyphae_ARS Uromyces appendicula...    44   4.9    1
(EH296545) UAHYP_03C_R_C02 UaHyphae_ARS Uromyces appendicula...    44   4.9    1
(EH296532) UAHYP_03C_F_C02 UaHyphae_ARS Uromyces appendicula...    44   4.9    1
(EC463706) 1T250736_1912_1712 LNCAP + R1881 synthetic Androg...    44   4.9    1
(DY260859) KN0AAP13YN03FM1 Fruit-TF Citrus clementina cDNA 5...    44   4.9    1
(CB557235) AMGNNUC:NRHY5-00287-B9-A W Rat hypothalamus (1047...    44   4.9    1
(BP128461) Nicotiana tabacum cDNA, clone: BY213, primer: M13...    44   4.9    1
(GE748892) MUS19-N24.y1d-s SHGC-MUS Mytilus californianus cD...    44   4.9    1
(FE227664) O101B03 Antarctic fish Dissostichus mawsoni adult...    44   4.9    1
(FE212400) L030E02 Antarctic fish Dissostichus mawsoni adult...    44   4.9    1
(EY714097) CS00-C3-702-038-D11-CT.F Sweet orange fruit, deve...    44   4.9    1
(EY649793) CS00-C1-100-003-E12-CT.F Sweet orange leaf, green...    44   4.9    1
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    44   4.9    1
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    44   4.9    1
(AC210122) Macaca mulatta  BAC CH250-325O21 (Children's Hosp...    36   4.9    5
(AM422018) Candidatus Phytoplasma australiense complete genome.    32   5.1    13
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    32   5.1    4
(CO041910) UI-M-FY0-cff-f-05-0-UI.s1 NIH_BMAP_FY0 Mus muscul...    30   5.4    3
(GE859331) 1112869994306 BABEVCEREB-C-01-1-7KB Papio anubis ...    30   5.5    3
(CB521116) UI-M-GI0-cek-p-20-0-UI.r1 NIH_BMAP_GI0 Mus muscul...    30   5.6    3
(AG551654) Mus musculus molossinus DNA, clone:MSMg01-468B16....    30   5.6    3
(DN888798) nag18c09.x1 Rabbit eye minus lens and cornea. Unn...    30   5.6    3
(BV208895) TLE4_2138 Rhesus macaque genomic DNA Macaca mulat...    30   5.6    3
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    36   5.7    12
(EH016844) USDA-FP_189304 Lysiphlebus testaceipes adult whol...    34   5.8    2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   5.9    14
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ...    32   6.0    12
(CC844476) NDL.114F7.T7 Notre Dame Liverpool Aedes aegypti g...    38   6.1    2
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    32   6.1    2
(FI473207) CH322-61N13.y CHORI-322 Drosophila melanogaster g...    38   6.2    2
(AC152895) Aotus nancymaae clone CH258-168B20, WORKING DRAFT...    32   6.3    4
(DN888799) nag18c09.y1 Rabbit eye minus lens and cornea. Unn...    30   6.4    3
(AL928951) Zebrafish DNA sequence from clone CH211-67N3 in l...    32   6.5    7
(DX978837) SBA006_C04.f Sugar beet BAC library USH20 (Code S...    40   6.6    2
(AC150783) Medicago truncatula chromosome 6 clone mth2-132h9...    34   6.7    4
(BZ390651) EINBH25TR EI_10_12_KB Entamoeba invadens genomic ...    36   6.8    2
(FH425831) CHO_OF4303xj06f1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   7.3    2
(AC225471) Medicago truncatula clone mth2-176h19, WORKING DR...    42   7.5    3
(BX649466) Zebrafish DNA sequence from clone DKEY-31C8 in li...    38   7.6    4
(EW872948) G894P530FH17.T0 Ixodes scapularis Pooled Non-infe...    40   7.6    2
(AC200722) Macaca mulatta clone CH250-13K14, WORKING DRAFT S...    36   7.6    5
(AC236192) Glycine max strain Williams 82 clone GM_WBb0131F2...    38   7.7    3
(AC015814) Homo sapiens clone RP11-21M15, WORKING DRAFT SEQU...    40   7.7    3
(CU855616) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.8    4
(AC169679) Bos taurus clone CH240-256D13, WORKING DRAFT SEQU...    32   7.8    7
(CB182244) AGENCOURT_11379349 NIH_MGC_164 Mus musculus cDNA ...    30   7.9    3
(CR626904) Zebrafish DNA sequence from clone DKEY-53D10 in l...    36   8.0    5
(BH132044) ENTOQ35TF Entamoeba histolytica Sheared DNA Entam...    40   8.0    2
(X59040) Clostridium botulinum D phage gene for exoenzyme C3.      36   8.0    3
(EK048889) 1092959668130 Global-Ocean-Sampling_GS-31-01-01-1...    34   8.4    2
(CU222540) S.lycopersicum DNA sequence from clone SL_MboI-12...    42   8.5    3
(AC128911) Rattus norvegicus clone CH230-326J5, *** SEQUENCI...    32   8.7    2
(AC131638) Rattus norvegicus clone CH230-10K8, *** SEQUENCIN...    32   8.7    2
(BX936421) Zebrafish DNA sequence from clone CH211-231D19 in...    34   8.8    4
(AC094355) Rattus norvegicus clone CH230-3C12, *** SEQUENCIN...    32   8.8    2
(BX321889) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    30   8.9    2
(CR550302) Zebrafish DNA sequence from clone DKEY-145I3 in l...    30   8.9    2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    30   8.9    6
(AC192506) Cavia porcellus clone CH234-429O4, WORKING DRAFT ...    38   8.9    3
(AC115483) Drosophila melanogaster clone BACR20D18, complete...    32   9.0    2
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ...    38   9.1    14
(CX217687) MNS31944 Mouse Neurosphere Normalized cDNA librar...    30   9.2    3
(CQ588086) Sequence 15844 from Patent WO0171042.                   32   9.3    2
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ...    32   9.5    12
(CT583685) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   9.5    3
(CR753814) Zebrafish DNA sequence from clone CH211-195C14 in...    32   9.9    2
(CT997821) Zebrafish DNA sequence from clone DKEY-204C2 in l...    36   9.9    5
(AC014600) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   9.9    2

>(AC115608) Dictyostelium discoideum chromosome 2 map 6199819-6206243
            strain AX4, complete sequence.
          Length = 6424

 Score =  950 bits (479), Expect = 0.0
 Identities = 479/479 (100%)
 Strand = Plus / Minus


Query: 1    aaataataataaatttttattaccaggagttttaataagtggatttacaattttaagtgg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2486 aaataataataaatttttattaccaggagttttaataagtggatttacaattttaagtgg 2427


Query: 61   attaacagcaacaacagtatcatgtgatacaattaataaagataaagatgcaacagttgt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 attaacagcaacaacagtatcatgtgatacaattaataaagataaagatgcaacagttgt 2367


Query: 121  tacacatcatgttgaaattaaaaatgttccaacaacaacacaaaagattcaaaaagttgc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2366 tacacatcatgttgaaattaaaaatgttccaacaacaacacaaaagattcaaaaagttgc 2307


Query: 181  aggtgttacaacaatgggtggtgcattaggatattgttgtggtattgccactagaaagat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2306 aggtgttacaacaatgggtggtgcattaggatattgttgtggtattgccactagaaagat 2247


Query: 241  tggtacaatggtattagttttcgttggtgccattttcattgtagttcaattattatcttc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246 tggtacaatggtattagttttcgttggtgccattttcattgtagttcaattattatcttc 2187


Query: 301  aaaaggttatatcgttgttaaatgggataaagttagtgaagaacattcaccaaaattcac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2186 aaaaggttatatcgttgttaaatgggataaagttagtgaagaacattcaccaaaattcac 2127


Query: 361  aaaagaaaaaagacgtcaatacattcgttccttttataatttattaactagtaatttacc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 aaaagaaaaaagacgtcaatacattcgttccttttataatttattaactagtaatttacc 2067


Query: 421  atttaaagttggttttggtagtggtttccttttaggttttaaacaataaacaataaaca 479
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 atttaaagttggttttggtagtggtttccttttaggttttaaacaataaacaataaaca 2008

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 747,307,232
Number of extensions: 58278376
Number of successful extensions: 5084902
Number of sequences better than 10.0: 235
Length of query: 479
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 456
Effective length of database: 102,190,702,835
Effective search space: 46598960492760
Effective search space used: 46598960492760
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05401-1 (Contig-U05401-1Q) /CSM_Contig/Contig-U05401-1Q.Seq.d
         (479 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008226_1792(AP008226|pid:none) Thermus thermophilus HB8 genomi...    68   1e-10
CP001114_427(CP001114|pid:none) Deinococcus deserti VCD115, comp...    62   7e-09
(Q8IVP5) RecName: Full=FUN14 domain-containing protein 1;  &AL02...    56   5e-07
BC150029_1(BC150029|pid:none) Bos taurus FUN14 domain containing...    55   6e-07
BT045832_1(BT045832|pid:none) Salmo salar clone ssal-rgf-534-015...    55   8e-07
BC161330_1(BC161330|pid:none) Xenopus tropicalis hypothetical pr...    55   1e-06
CP000359_1507(CP000359|pid:none) Deinococcus geothermalis DSM 11...    55   1e-06
(Q6DH87) RecName: Full=FUN14 domain-containing protein 1;  &BC07...    54   1e-06
BT075907_1(BT075907|pid:none) Caligus rogercresseyi clone crog-e...    54   1e-06
BX572627_4(BX572627|pid:none) Zebrafish DNA sequence from clone ...    54   2e-06
BT048143_1(BT048143|pid:none) Salmo salar clone ssal-evf-006-330...    52   9e-06
BC076744_1(BC076744|pid:none) Xenopus laevis MGC82241 protein, m...    52   9e-06
BT049353_1(BT049353|pid:none) Salmo salar clone ssal-eve-539-381...    52   9e-06
BC042794_1(BC042794|pid:none) Mus musculus FUN14 domain containi...    50   2e-05
(Q9D6K8) RecName: Full=FUN14 domain-containing protein 2; AltNam...    50   2e-05
BC067852_1(BC067852|pid:none) Homo sapiens FUN14 domain containi...    50   2e-05
BT083010_1(BT083010|pid:none) Anoplopoma fimbria clone afim-evh-...    49   4e-05
(Q9BWH2) RecName: Full=FUN14 domain-containing protein 2; AltNam...    49   8e-05
CR858389_1(CR858389|pid:none) Pongo abelii mRNA; cDNA DKFZp459E1...    49   8e-05
AX885255_1(AX885255|pid:none) Sequence 1118 from Patent EP1033401.     49   8e-05
(Q864V5) FUN14 domain-containing protein 2 (Hepatitis C virus co...    49   8e-05
AK006596_1(AK006596|pid:none) Mus musculus adult male testis cDN...    48   1e-04
AK077003_1(AK077003|pid:none) Mus musculus adult male testis cDN...    48   1e-04
AY237129_1(AY237129|pid:none) Rattus norvegicus HCBP6 mRNA, comp...    47   2e-04
BC078989_1(BC078989|pid:none) Rattus norvegicus similar to RIKEN...    47   2e-04
(Q7YRC0) FUN14 domain-containing protein 2 (Hepatitis C virus co...    47   3e-04
AJ627421_27(AJ627421|pid:none) Uncultured crenarchaeote genomic ...    42   0.009
AM180088_1406(AM180088|pid:none) Haloquadratum walsbyi DSM 16790...    40   0.021
AK340142_1(AK340142|pid:none) Acyrthosiphon pisum ACYPI007484 mR...    39   0.060
B72634(B72634)hypothetical protein APE1529 - Aeropyrum pernix (s...    39   0.060
CP000855_117(CP000855|pid:none) Thermococcus onnurineus NA1, com...    39   0.079
CP001398_1957(CP001398|pid:none) Thermococcus gammatolerans EJ3,...    35   0.67
AY237130_1(AY237130|pid:none) Canis familiaris HCBP6 mRNA, parti...    35   1.1
AY835431_61(AY835431|pid:none) Pseudendoclonium akinetum chlorop...    34   1.5
CP000241_1165(CP000241|pid:none) Helicobacter pylori HPAG1, comp...    33   3.3
AE014134_1873(AE014134|pid:none) Drosophila melanogaster chromos...    33   4.3
CP000816_637(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    32   5.7
AP005400_26(AP005400|pid:none) Oryza sativa Japonica Group genom...    32   5.7
T17612(T17612) Vp260 protein - Chlorella virus PBCV-1  &U10029_1...    32   5.7
BA000028_936(BA000028|pid:none) Oceanobacillus iheyensis HTE831 ...    32   5.7
AP009256_841(AP009256|pid:none) Bifidobacterium adolescentis ATC...    32   7.4
AM444262_1(AM444262|pid:none) Vitis vinifera contig VV78X118958....    32   7.4
CP001217_1181(CP001217|pid:none) Helicobacter pylori P12, comple...    32   7.4
CP001173_1140(CP001173|pid:none) Helicobacter pylori G27, comple...    32   9.6
CP000506_29(CP000506|pid:none) Thermofilum pendens Hrk 5 plasmid...    32   9.6
AC1460(AC1460) sugar ABC transporters, permease protein homolog ...    32   9.6
CP000479_4605(CP000479|pid:none) Mycobacterium avium 104, comple...    32   9.6

>AP008226_1792(AP008226|pid:none) Thermus thermophilus HB8 genomic
           DNA, complete genome.
          Length = 109

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 31/94 (32%), Positives = 48/94 (51%)
 Frame = +2

Query: 182 GVTTMGGALGYCCGIATRKIGTMVLVFVGAIFIVVQLLSSKGYIVVKWDKVSEEHSPKFT 361
           G  T GG  GY  G A +K+G ++ + +G +F+ +QLL+  GY+ V W ++  +  P
Sbjct: 14  GQITFGGLAGYAVGYALKKVGRLLAIALGLLFVALQLLAQAGYVEVDWTRIQRDVEPLLQ 73

Query: 362 KEKRRQYIRSFYNLLTSNLPFKVGFGSGFLLGFK 463
           +   R         LT NLPF   F  G +LG +
Sbjct: 74  QPALRNLWDRLLATLTHNLPFGASFVGGLVLGLR 107

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 630,318,069
Number of extensions: 11382150
Number of successful extensions: 35646
Number of sequences better than 10.0: 47
Number of HSP's gapped: 35631
Number of HSP's successfully gapped: 47
Length of query: 159
Length of database: 1,061,185,681
Length adjustment: 118
Effective length of query: 41
Effective length of database: 675,508,817
Effective search space: 27695861497
Effective search space used: 27695861497
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.95  gvh: 0.63  alm: 0.18  top: 0.40  tms: 0.13  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U05401-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0