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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01148-1
Contig ID Contig-U01148-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01148-1 (Contig-U01148-1Q) /CSM_Contig/Contig-U01148-1Q.Seq.d
CAACAACTACAACAACAACAACAATTACAACTTGAAAATTCAGATGATCC
AGAAGAAATTCATAGAAAATTCATAATAAATTGTACGAATCAATTAAATA
AAGCTCAAAAATATCAATTCAATTATGAAATTTTTGAACAATTATCAAAA
GAAGTCTCAACTATAAACACCTCAAATAGTCAAAATTTAATTGGTGGTGG
TATTGGTGGTGTTAATATTGGTGGTGGTAATGTTGGTGTTGGTGGTAATG
TTGGTGGAAACGTTGGTGGTGGTGGTGGTGGTAATACAAACTATCAAACA
TCACCAAATATTCCATCGAATCAACAAGTTGGTACATTTCAAGTTGGTGG
TAGTGGTGTCGGTAGTAATTTAATAACAATGAATCCATCATTAAATGCAA
ATACAAGTAGTGAAAATATAATGTTAACTGAAAAAGAAATTAGAATTGAA
TGTGGTAATTTCAATTTATTCATTGGTATGGATACAAAAGTTAAAGAAGA
TAATAATAATAATAATAATAA----------CAATTATTTTGGCGAATAA
TAATAATATTAATATAAATAATAATAATATAAATAATAATAGTAATTTTG
ATGATAATTTTATTAAATCAAATAGAAATTACCAAATAGAAAAATTTTTC
AAAGGTTTAGTGGACGAAATTTCAAATAAATAAAAAAATCCATGTTTTTT
TTTTTTTTTTTTGTTTTTTTCCCTTTTAAGTCCCACATGGCGAAATTTCA
AAAAAAAATAAAAAATTAAATTTTACTTTTTTTTTTTTTTTATAATAAAA
ATTTTTGTGAAAAAATAAAAATAAAAAAATAATTATAGAAAATTTGATGT
TTAAAGTAAAAAAAAAAAA
Gap gap included
Contig length 859
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2355042
End point 2355904
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U01148
List of clone(s) 

est1=SLB676F,1,522
est2=VSF187F,523,724
est3=SLB676Z,558,861
Translated Amino Acid sequence 
QQLQQQQQLQLENSDDPEEIHRKFIINCTNQLNKAQKYQFNYEIFEQLSKEVSTINTSNS
QNLIGGGIGGVNIGGGNVGVGGNVGGNVGGGGGGNTNYQTSPNIPSNQQVGTFQVGGSGV
GSNLITMNPSLNANTSSENIMLTEKEIRIECGNFNLFIGMDTKVKEDNNNNNN---

---IILANNNNININNNNINNNSNFDDNFIKSNRNYQIEKFFKGLVDEISNK*knpcfff
fflffsllsptwrnfkkk*kikfyfffffiikifvkk*k*knnyrkfdv*skkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
QQLQQQQQLQLENSDDPEEIHRKFIINCTNQLNKAQKYQFNYEIFEQLSKEVSTINTSNS
QNLIGGGIGGVNIGGGNVGVGGNVGGNVGGGGGGNTNYQTSPNIPSNQQVGTFQVGGSGV
GSNLITMNPSLNANTSSENIMLTEKEIRIECGNFNLFIGMDTKVKEDNNNNNN---

---qlfwriiiili*iiii*iiivilmiillnqieitk*knfskv*wtkfqinkkihvff
fffcffpf*vphgeiskknkklnftffffl**kfl*knknkkiiienlmfkvkkk

Frame B:
nnynnnnnynlkiqmiqkkfiens**ivrin*iklkninsimkflnnyqkksql*tpqiv
ki*lvvvlvvlilvvvmlvlvvmlvetlvvvvvviqtikhhqifhrinklvhfklvvvvs
vvi**q*ihh*mqiqvvki*c*lkkklelnvvisiyslvwiqklkkiiiiiii---

---nyfge***y*yk***yk****f***fy*ik*klpnrkifqrfsgrnfk*ikksmfff
fffvffpfkshmakfqkkikn*illffffynknfcekikikk*l*ki*clk*kkk

Frame C:
tttttttitt*kfr*srrns*kihnklyesik*sskisiql*nf*tiikrslnykhlk*s
kfnwwwywwc*ywww*cwcww*cwwkrwwwwww*yklsnitkysiestswyissww*wcr
**fnnnesiikckyk**kynvn*krn*n*mw*fqfihwygyks*rr*******---

---IILANNNNININNNNINNNSNFDDNFIKSNRNYQIEKFFKGLVDEISNK*knpcfff
fflffsllsptwrnfkkk*kikfyfffffiikifvkk*k*knnyrkfdv*skkkk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01148-1 (Contig-U01148-1Q)
/CSM_Contig/Contig-U01148-1Q.Seq.d
         (869 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01148-1 (Contig-U01148-1Q) /CSM_Contig/Conti...   430  e-120
Contig-U05372-1 (Contig-U05372-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U05301-1 (Contig-U05301-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U10962-1 (Contig-U10962-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U03749-1 (Contig-U03749-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U02221-1 (Contig-U02221-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U01917-1 (Contig-U01917-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U14541-1 (Contig-U14541-1Q) /CSM_Contig/Conti...    36  0.085
Contig-U12442-1 (Contig-U12442-1Q) /CSM_Contig/Conti...    36  0.085
Contig-U12344-1 (Contig-U12344-1Q) /CSM_Contig/Conti...    36  0.085

>Contig-U01148-1 (Contig-U01148-1Q) /CSM_Contig/Contig-U01148-1Q.Seq.d
          Length = 869

 Score =  430 bits (217), Expect = e-120
 Identities = 217/217 (100%)
 Strand = Plus / Plus

                                                                       
Query: 283 aatacaaactatcaaacatcaccaaatattccatcgaatcaacaagttggtacatttcaa 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aatacaaactatcaaacatcaccaaatattccatcgaatcaacaagttggtacatttcaa 342

                                                                       
Query: 343 gttggtggtagtggtgtcggtagtaatttaataacaatgaatccatcattaaatgcaaat 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gttggtggtagtggtgtcggtagtaatttaataacaatgaatccatcattaaatgcaaat 402

                                                                       
Query: 403 acaagtagtgaaaatataatgttaactgaaaaagaaattagaattgaatgtggtaatttc 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acaagtagtgaaaatataatgttaactgaaaaagaaattagaattgaatgtggtaatttc 462

                                                
Query: 463 aatttattcattggtatggatacaaaagttaaagaag 499
           |||||||||||||||||||||||||||||||||||||
Sbjct: 463 aatttattcattggtatggatacaaaagttaaagaag 499


 Score =  315 bits (159), Expect = 6e-86
 Identities = 159/159 (100%)
 Strand = Plus / Plus

                                                                       
Query: 32  ttgaaaattcagatgatccagaagaaattcatagaaaattcataataaattgtacgaatc 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32  ttgaaaattcagatgatccagaagaaattcatagaaaattcataataaattgtacgaatc 91

                                                                       
Query: 92  aattaaataaagctcaaaaatatcaattcaattatgaaatttttgaacaattatcaaaag 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  aattaaataaagctcaaaaatatcaattcaattatgaaatttttgaacaattatcaaaag 151

                                                  
Query: 152 aagtctcaactataaacacctcaaatagtcaaaatttaa 190
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagtctcaactataaacacctcaaatagtcaaaatttaa 190


 Score =  204 bits (103), Expect = 2e-52
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 592 gtaattttgatgataattttattaaatcaaatagaaattaccaaatagaaaaatttttca 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtaattttgatgataattttattaaatcaaatagaaattaccaaatagaaaaatttttca 651

                                                      
Query: 652 aaggtttagtggacgaaatttcaaataaataaaaaaatccatg 694
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aaggtttagtggacgaaatttcaaataaataaaaaaatccatg 694


 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 721 cccttttaagtcccacatggcgaaatttc 749
           |||||||||||||||||||||||||||||
Sbjct: 721 cccttttaagtcccacatggcgaaatttc 749


>Contig-U05372-1 (Contig-U05372-1Q) /CSM_Contig/Contig-U05372-1Q.Seq.d
          Length = 696

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 667 aaatttcaaataaataaaaaaa 688
           ||||||||||||||||||||||
Sbjct: 623 aaatttcaaataaataaaaaaa 644


>Contig-U05301-1 (Contig-U05301-1Q) /CSM_Contig/Contig-U05301-1Q.Seq.d
          Length = 575

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 670 tttcaaataaataaaaaaat 689
           ||||||||||||||||||||
Sbjct: 528 tttcaaataaataaaaaaat 547


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,245
Number of Sequences: 8361
Number of extensions: 24245
Number of successful extensions: 3102
Number of sequences better than 10.0: 619
length of query: 869
length of database: 7,895,291
effective HSP length: 16
effective length of query: 853
effective length of database: 7,761,515
effective search space: 6620572295
effective search space used: 6620572295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.23
Homology vs DNA 
Query= Contig-U01148-1 (Contig-U01148-1Q) /CSM_Contig/Contig-U01148-1Q.Seq.d
         (869 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060844) Dictyostelium discoideum slug cDNA, clone SLB676.      474   0.0    2
(AU033971) Dictyostelium discoideum slug cDNA, clone SLB676.       86   1e-24  3
(AU264840) Dictyostelium discoideum vegetative cDNA clone:VS...    86   2e-14  2
(AL451129) Human DNA sequence from clone RP11-23D5 on chromo...    62   4e-05  1
(AC200123) Zea mays chromosome 4 clone CH201-336B2; ZMMBBc03...    50   1e-04  3
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    52   4e-04  3
(BX897723) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   5e-04  2
(BX649263) Zebrafish DNA sequence from clone DKEY-21O22 in l...    46   5e-04  2
(AC184636) Strongylocentrotus purpuratus clone R3-4015O21, W...    46   5e-04  2
(CR318585) Zebrafish DNA sequence from clone CH211-153H7 in ...    58   6e-04  1
(AM448720) Vitis vinifera contig VV78X023768.16, whole genom...    58   6e-04  1
(AM433772) Vitis vinifera contig VV78X196068.31, whole genom...    58   6e-04  1
(AM425702) Vitis vinifera contig VV78X105390.14, whole genom...    58   6e-04  1
(AC150786) Medicago truncatula clone mth2-170o9, complete se...    58   6e-04  1
(AC148527) Medicago truncatula clone mth2-49g13, complete se...    58   6e-04  1
(AC141115) Medicago truncatula clone mth2-16b23, complete se...    58   6e-04  1
(AC141112) Medicago truncatula clone mth2-15m12, complete se...    58   6e-04  1
(AC135797) Medicago truncatula clone mth2-11f7, complete seq...    58   6e-04  1
(AC125368) Medicago truncatula clone mth2-13h15, complete se...    58   6e-04  1
(DD320655) Polymorphisms in hepatocellular carcinoma suscept...    58   6e-04  1
(DD147312) A method for examining secondary hyperparathyroid...    58   6e-04  1
(AC034206) Homo sapiens chromosome 5 clone CTC-321K16, compl...    58   6e-04  1
(AC005738) Homo sapiens chromosome 5, BAC clone 7g12 (LBNL H...    58   6e-04  1
(AC123496) Rattus norvegicus clone CH230-104G16, *** SEQUENC...    58   6e-04  1
(AC098100) Rattus norvegicus clone CH230-82H10, *** SEQUENCI...    58   6e-04  1
(AC063981) Homo sapiens chromosome 5 clone XXp1-766F5, WORKI...    58   6e-04  1
(CT954271) M.truncatula DNA sequence *** SEQUENCING IN PROGR...    58   6e-04  1
(AC202506) Medicago truncatula clone mth2-49e15, WORKING DRA...    58   6e-04  1
(AC201674) Strongylocentrotus purpuratus clone R3-1040H2, WO...    58   6e-04  1
(AC179351) Strongylocentrotus purpuratus clone R3-59C12, WOR...    58   6e-04  1
(AC178346) Strongylocentrotus purpuratus clone R3-3105E21, W...    58   6e-04  1
(AC009017) Homo sapiens chromosome 5 clone XXp1-929G6, WORKI...    58   6e-04  1
(CR339716) mte1-71E10FM1 BAC end, cultivar Jemalong A17 of M...    58   6e-04  1
(CR307484) mte1-28O24RM1 BAC end, cultivar Jemalong A17 of M...    58   6e-04  1
(BZ117843) CH230-510P3.TV CHORI-230 Segment 2 Rattus norvegi...    58   6e-04  1
(EH776682) CNSM8981.b1_J13.ab1 CNS(LMS) yellow starthistle C...    58   6e-04  1
(AF079445) Dictyostelium discoideum TipC (tipC) gene, comple...    46   8e-04  4
(AC140735) Rattus norvegicus clone CH230-199G5, WORKING DRAF...    44   0.001  4
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       52   0.002  2
(AC197762) Zea mays chromosome 7 clone ZMMBBb-470A10; ZMMBBb...    44   0.002  2
(AU060181) Dictyostelium discoideum slug cDNA, clone SLA528.       44   0.002  2
(AL845314) Zebrafish DNA sequence from clone CH211-153N11 in...    44   0.002  2
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    50   0.002  2
(AC079840) Homo sapiens chromosome 3 clone RP11-316J16, WORK...    50   0.002  2
(CE104814) tigr-gss-dog-17000371148974 Dog Library Canis lup...    54   0.002  2
(AC196128) Zea mays chromosome 4 clone ZMMBBb-288C1; ZMMBBb0...    48   0.002  3
(BX000362) Zebrafish DNA sequence from clone DKEYP-93D12 in ...    44   0.002  2
(DX544182) GH_MBb0070F21r GH_MBb Gossypium hirsutum genomic ...    44   0.002  2
(CT347042) Sus scrofa genomic clone CH242-42E9, genomic surv...    44   0.002  2
(CT737255) Zebrafish DNA sequence from clone DKEY-259G19 in ...    56   0.002  1
(CT737161) Zebrafish DNA sequence from clone DKEYP-27E2 in l...    56   0.002  1
(CT583723) Zebrafish DNA sequence from clone DKEY-33B17 in l...    56   0.002  1
(CR927050) Zebrafish DNA sequence from clone DKEY-217G21.          56   0.002  1
(CR848719) Zebrafish DNA sequence from clone DKEY-269D20 in ...    56   0.002  1
(BX957332) Zebrafish DNA sequence from clone DKEY-170K13 in ...    56   0.002  1
(BX649556) Zebrafish DNA sequence from clone DKEY-29M1 in li...    56   0.002  1
(BX088646) Zebrafish DNA sequence from clone DKEY-42F19 in l...    56   0.002  1
(AL935044) Zebrafish DNA sequence from clone CH211-190O19 in...    56   0.002  1
(BV283797) S232P6163FF9.T0 Beagle Canis familiaris STS genom...    56   0.002  1
(AB137132) Homo sapiens DNA, STS on chromosome 10, D10S1093i...    56   0.002  1
(AC163613) Mus musculus BAC clone RP24-150N2 from chromosome...    56   0.002  1
(AC158556) Mus musculus chromosome 15, clone RP23-140F20, co...    56   0.002  1
(AC131797) Mus musculus BAC clone RP24-496C20 from 1, comple...    56   0.002  1
(EU094516) Amaranthus hypochondriacus clone AHAAT010 microsa...    56   0.002  1
(DQ908253) Gossypium hirsutum clone LIB5327-030-A1-N1-B9_Gh3...    56   0.002  1
(AY023434) Oryza sativa microsatellite MRG5759 containing (T...    56   0.002  1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    56   0.002  1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    56   0.002  1
(AP004614) Oryza sativa Japonica Group genomic DNA, chromoso...    56   0.002  1
(AP004231) Oryza sativa Japonica Group genomic DNA, chromoso...    56   0.002  1
(AC195116) Populus trichocarpa clone Pop1-63A24, complete se...    56   0.002  1
(AC091494) Oryza sativa chromosome 3 BAC OSJNBa0070N04 genom...    56   0.002  1
(AC084748) Oryza sativa chromosome 3 BAC OSJNBa0010I09 genom...    56   0.002  1
(EA697784) Sequence 76663 from patent US 7365185.                  56   0.002  1
(EA681682) Sequence 60561 from patent US 7365185.                  56   0.002  1
(EA667736) Sequence 46615 from patent US 7365185.                  56   0.002  1
(EA643587) Sequence 22466 from patent US 7365185.                  56   0.002  1
(EA643581) Sequence 22460 from patent US 7365185.                  56   0.002  1
(DJ463484) Method for analysing genome using microsatellite ...    56   0.002  1
(AC167697) Reniera sp. JGI-2005 clone JGIBAYC-5F12, complete...    56   0.002  1
(AL445143) Human DNA sequence from clone RP11-172E9 on chrom...    56   0.002  1
(AL138773) Human DNA sequence from clone RP4-660B20 on chrom...    56   0.002  1
(AC127969) Rattus norvegicus clone CH230-308B24, *** SEQUENC...    56   0.002  1
(AC106310) Rattus norvegicus clone CH230-123B14, *** SEQUENC...    56   0.002  1
(FP016181) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    56   0.002  1
(CR450732) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    56   0.002  1
(AL158134) Human DNA sequence *** SEQUENCING CANCELLED *** f...    56   0.002  1
(AL139127) Human DNA sequence *** SEQUENCING CANCELLED *** f...    56   0.002  1
(AC180855) Strongylocentrotus purpuratus clone R3-3069C1, WO...    56   0.002  1
(AC180380) Strongylocentrotus purpuratus clone R3-3113F23, W...    56   0.002  1
(AC178424) Strongylocentrotus purpuratus clone R3-3113K6, WO...    56   0.002  1
(AC177429) Strongylocentrotus purpuratus clone R3-1031C01, W...    56   0.002  1
(AQ259129) nbxb0022M19f CUGI Rice BAC Library Oryza sativa J...    56   0.002  1
(EI099128) hgv0002de02.b1 hgv Oryza rufipogon genomic clone ...    56   0.002  1
(DX007159) OG_ABa0121I14.r OG_ABa Oryza granulata genomic cl...    56   0.002  1
(DH680157) Rattus norvegicus DNA, BAC clone: RNB1-233C08, 5'...    56   0.002  1
(CR155012) Forward strand read from insert in 3'HPRT inserti...    56   0.002  1
(CG949685) MBEIJ18TR mth2 Medicago truncatula genomic clone ...    56   0.002  1
(CG927339) MBEJF08TF mth2 Medicago truncatula genomic clone ...    56   0.002  1
(B64478) CIT-HSP-2023G2.TR CIT-HSP Homo sapiens genomic clon...    56   0.002  1
(AU269979) Dictyostelium discoideum vegetative cDNA clone:VS...    56   0.002  1
(AU269978) Dictyostelium discoideum vegetative cDNA clone:VS...    56   0.002  1
(CV526860) CS_GIL_15E08_SP6 Blue crab gill, normalized Calli...    56   0.002  1
(CV071399) CS_gil_38F04_M13Reverse Blue crab gill, normalize...    56   0.002  1
(BJ382455) Dictyostelium discoideum cDNA clone:ddc44e24, 3' ...    56   0.002  1
(FF306004) 279364526 Pea aphid whole body normalized full le...    56   0.002  1
(EX836040) CBNB6186.rev CBNB Phycomyces blakesleeanus NRRL15...    56   0.002  1
(BJ385202) Dictyostelium discoideum cDNA clone:ddc54m06, 3' ...    44   0.002  3
(AM481687) Vitis vinifera contig VV78X176704.7, whole genome...    52   0.002  2
(AU264089) Dictyostelium discoideum vegetative cDNA clone:VS...    44   0.003  3
(AC207612) Homo sapiens FOSMID clone ABC12-46815800N3 from c...    44   0.003  4
(BJ370449) Dictyostelium discoideum cDNA clone:ddc54m06, 5' ...    44   0.004  3
(AM444761) Vitis vinifera contig VV78X126816.4, whole genome...    46   0.004  2
(AM433227) Vitis vinifera contig VV78X182981.5, whole genome...    46   0.005  2
(AC179509) Strongylocentrotus purpuratus clone R3-1035G8, WO...    44   0.005  4
(CR936478) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.005  4
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ...    50   0.005  7
(BI509012) BB170009A10G05.5 Bee Brain Normalized/Subtracted ...    52   0.005  2
(AC187383) Zea mays chromosome UNK clone CH201-259G6; ZMMBBc...    46   0.006  2
(AC007601) Homo sapiens chromosome 16 clone RP11-276H1, comp...    44   0.006  2
(AM456453) Vitis vinifera contig VV78X220196.6, whole genome...    46   0.006  2
(EL908184) INIT2_23_B03.g1_A006 G5 trophont cDNA (INIT2) Ich...    42   0.006  2
(FP101879) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.006  2
(EL913684) INIT2_64_C10.g2_A006 G5 trophont cDNA (INIT2) Ich...    42   0.006  2
(AC126766) Homo sapiens chromosome 16 clone RP11-1440E11, WO...    44   0.006  2
(CT990561) Zebrafish DNA sequence from clone CH211-284H6 in ...    44   0.006  2
(EL914189) INIT2_70_B10.g2_A006 G5 trophont cDNA (INIT2) Ich...    42   0.006  2
(AC176153) Strongylocentrotus purpuratus clone R3-3019H3, WO...    44   0.007  2
(AC199571) Zea mays chromosome 10 clone CH201-171K22; ZMMBBc...    44   0.007  2
(AC141081) Homo sapiens chromosome 16 clone RP11-927N1, WORK...    44   0.007  2
(AC158658) Mus musculus 6 BAC RP23-400L4 (Roswell Park Cance...    50   0.007  4
(GH164387) Nas34_B06_2004-11-30_046.ab1 Nasturtium 22 days p...    38   0.008  2
(AC211211) Zea mays chromosome 6 clone CH201-120D11; ZMMBBc0...    44   0.008  2
(EI470257) PV_GBa0077O16.r PV_GBa Phaseolus vulgaris genomic...    44   0.008  2
(DX570114) MUGQ_CH252P048B07Sp6_AV1004_032 CHORI-252 Vervet ...    44   0.008  2
(CT009666) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   0.009  2
(FI046247) CHO_OF6482xe21r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   0.009  2
(CU468967) Zebrafish DNA sequence from clone CH73-52F15 in l...    54   0.009  1
(CT025739) Zebrafish DNA sequence from clone CH73-130I22 in ...    54   0.009  1
(CR790365) Zebrafish DNA sequence from clone DKEY-179K24 in ...    54   0.009  1
(CR450791) Zebrafish DNA sequence from clone CH211-39A7 in l...    54   0.009  1
(BX664604) Zebrafish DNA sequence from clone CH211-253F20 in...    54   0.009  1
(BX511062) Zebrafish DNA sequence from clone CH211-266M11 in...    54   0.009  1
(AL935198) Zebrafish DNA sequence from clone CH211-198E13 in...    54   0.009  1
(BV724335) 00.221855.032A05 Xenopus tropicalis (Nigerian str...    54   0.009  1
(CT025692) Mouse DNA sequence from clone RP23-312G18 on chro...    54   0.009  1
(BX883045) Rattus norvegicus chromosome 20, major histocompa...    54   0.009  1
(AL928940) Mouse DNA sequence from clone RP23-94J17 on chrom...    54   0.009  1
(AL845442) Mouse DNA sequence from clone RP23-392D9 on chrom...    54   0.009  1
(AL671977) Mouse DNA sequence from clone RP23-171A16 on chro...    54   0.009  1
(AC173484) Mus musculus BAC clone RP23-250N1 from chromosome...    54   0.009  1
(AC172890) Mus musculus BAC clone RP24-337A4 from chromosome...    54   0.009  1
(AC131802) Mus musculus BAC clone RP24-542I6 from 7, complet...    54   0.009  1
(AC127238) Mus musculus BAC clone RP24-378P20 from 7, comple...    54   0.009  1
(AC112953) Mus musculus chromosome 7, clone RP23-44J21, comp...    54   0.009  1
(AM462459) Vitis vinifera, whole genome shotgun sequence, co...    54   0.009  1
(AM446778) Vitis vinifera contig VV78X057839.2, whole genome...    54   0.009  1
(AM443954) Vitis vinifera, whole genome shotgun sequence, co...    54   0.009  1
(AM439431) Vitis vinifera contig VV78X154617.11, whole genom...    54   0.009  1
(AC216917) Populus trichocarpa clone POP066-L06, complete se...    54   0.009  1
(AC215389) Solanum lycopersicum chromosome 2 clone C02HBa012...    54   0.009  1
(AC215381) Solanum lycopersicum chromosome 2 clone C02HBa009...    54   0.009  1
(CU467016) Platypus DNA sequence from clone CLM1-452G3.            54   0.009  1
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    54   0.009  1
(AC127982) Rattus norvegicus clone CH230-419M11, *** SEQUENC...    54   0.009  1
(AC113576) Tetraodon nigroviridis clone GSTNA-18F1, WORKING ...    54   0.009  1
(AC110112) Rattus norvegicus clone CH230-301A13, *** SEQUENC...    54   0.009  1
(AC106472) Rattus norvegicus clone CH230-152O1, *** SEQUENCI...    54   0.009  1
(AC101451) Mus musculus clone RP23-184H19, LOW-PASS SEQUENCE...    54   0.009  1
(AC097923) Rattus norvegicus clone CH230-47M10, WORKING DRAF...    54   0.009  1
(AC095580) Rattus norvegicus clone CH230-8H20, *** SEQUENCIN...    54   0.009  1
(CU928352) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    54   0.009  1
(AC094348) Rattus norvegicus clone CH230-3K4, WORKING DRAFT ...    54   0.009  1
(AC079564) Mus musculus clone RP23-54D6, WORKING DRAFT SEQUE...    54   0.009  1
(AC079481) Mus musculus clone RP23-158J13, WORKING DRAFT SEQ...    54   0.009  1
(CR293519) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    54   0.009  1
(AL844509) Plasmodium falciparum chromosome 13.                    54   0.009  1
(AC203089) Zea mays chromosome 6 clone CH201-323H6; ZMMBBc03...    54   0.009  1
(AC186212) Canis lupus familiaris chromosome 19 clone 240_A_...    54   0.009  1
(AC184482) Strongylocentrotus purpuratus clone R3-1014H7, WO...    54   0.009  1
(AC180137) Strongylocentrotus purpuratus clone R3-4007F18, W...    54   0.009  1
(AC179372) Strongylocentrotus purpuratus clone R3-59M16, WOR...    54   0.009  1
(AC178987) Strongylocentrotus purpuratus clone R3-3122J15, W...    54   0.009  1
(AC176226) Strongylocentrotus purpuratus clone R3-3062L2, WO...    54   0.009  1
(BH126643) BARC-Satt471 Size-selected soybean genomic Glycin...    54   0.009  1
(AZ947469) 2M0210M10F Mouse 10kb plasmid UUGC2M library Mus ...    54   0.009  1
(AZ592916) 1M0404J07F Mouse 10kb plasmid UUGC1M library Mus ...    54   0.009  1
(AQ603816) HS_2131_A1_E04_MR CIT Approved Human Genomic Sper...    54   0.009  1
(FH072406) CHO_OF3675xa16r1.ab1 CHO_OF3 Nicotiana tabacum ge...    54   0.009  1
(FH072348) CHO_OF3675xa16f1.ab1 CHO_OF3 Nicotiana tabacum ge...    54   0.009  1
(ET112914) QM0AAC22DH07RM1 CCH3 Citrus clementina genomic cl...    54   0.009  1
(EJ265431) 1095351007671 Global-Ocean-Sampling_GS-27-01-01-1...    54   0.009  1
(ED181031) AUAC-aag54f07.b1 Ascaris suum whole genome shotgu...    54   0.009  1
(DU932146) 356509 Tomato EcoRI BAC Library Solanum lycopersi...    54   0.009  1
(CZ951362) 266885 Tomato EcoRI BAC Library Solanum lycopersi...    54   0.009  1
(CZ927124) 243623 Tomato EcoRI BAC Library Solanum lycopersi...    54   0.009  1
(CU854909) A BAC library has been constructed from PN40024 g...    54   0.009  1
(CE010384) tigr-gss-dog-17000321007659 Dog Library Canis lup...    54   0.009  1
(EL482982) CHUM4916.b1_H06.ab1 CHU(LMS) puzzle sunflower Hel...    54   0.009  1
(EH014707) USDA-FP_187380 Lysiphlebus testaceipes adult whol...    54   0.009  1
(DY893969) CeleSEQ13438 Cunninghamella elegans pBluescript (...    54   0.009  1
(DY890326) CeleSEQ9292 Cunninghamella elegans pBluescript (E...    54   0.009  1
(CV990381) IpCGFr1_4_A10_23 IpCGFr1 Ictalurus punctatus cDNA...    54   0.009  1
(FG581468) TpNBL010095 Trichinella pseudospiralis new born l...    54   0.009  1
(FD033090) CBCZ4924.g1 CBCZ: cDNA library made from Channel ...    54   0.009  1
(FD026868) CBCZ1245.g1 CBCZ: cDNA library made from Channel ...    54   0.009  1
(EY339270) CAWY9561.fwd CAWY Helobdella robusta Subtracted E...    54   0.009  1
(EY337746) CAWY8537.fwd CAWY Helobdella robusta Subtracted E...    54   0.009  1
(EY333475) CAWY5713.fwd CAWY Helobdella robusta Subtracted E...    54   0.009  1
(EY328683) CAWY1770.fwd CAWY Helobdella robusta Subtracted E...    54   0.009  1
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    52   0.011  2
(AF020282) Dictyostelium discoideum DG2033 gene, partial cds.      52   0.011  2
(AM462083) Vitis vinifera contig VV78X255938.17, whole genom...    46   0.011  2
(CW712775) AIAA-aaa89g12.g1 Ancylostoma caninum whole genome...    44   0.014  3
(AM446970) Vitis vinifera contig VV78X109667.3, whole genome...    46   0.015  2
(AC234205) Zea mays chromosome 10 clone ZMMBBb-549G2; ZMMBBb...    44   0.015  2
(CT737135) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.016  5
(AC184564) Strongylocentrotus purpuratus clone R3-3052G21, W...    46   0.016  4
(AC185107) Zea mays chromosome 5 clone ZMMBBb-599P20; ZMMBBb...    46   0.017  2
(BX511232) Zebrafish DNA sequence from clone CH211-11K18 in ...    46   0.017  4
(BX005150) Zebrafish DNA sequence from clone CH211-105J21 in...    48   0.017  5
(AC177170) Strongylocentrotus purpuratus clone R3-4015O05, W...    44   0.017  5
(AC214039) Zea mays chromosome 5 clone CH201-282M18; ZMMBBc0...    44   0.018  2
(AC214487) Zea mays chromosome 2 clone CH201-242P2; ZMMBBc02...    46   0.019  2
(AM431096) Vitis vinifera contig VV78X088867.4, whole genome...    46   0.019  2
(CL896399) abg37f09.x1 Soybean random, unfiltered genomic li...    44   0.019  2
(C22993) Dictyostelium discoideum gamete cDNA, clone FC-AN24.      44   0.019  2
(CX308038) C20005D01SK OF2 Citrus clementina cDNA clone C200...    44   0.020  2
(AC139133) Mus musculus chromosome 15, clone RP23-412G9, com...    44   0.020  4
(AC181654) Strongylocentrotus purpuratus clone R3-3040P22, W...    52   0.020  2
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         52   0.020  2
(AC199054) Zea mays chromosome unknown clone CH201-548N17; Z...    44   0.021  2
(C93032) Dictyostelium discoideum slug cDNA, clone SSF573.         44   0.021  2
(FH058870) CHO_OF3490xe08r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   0.021  2
(BX571852) Zebrafish DNA sequence from clone DKEY-175N6 in l...    44   0.021  5
(AC218934) Zea mays chromosome 3 clone CH201-460K16; ZMMBBc0...    44   0.021  2
(AC151660) Dasypus novemcinctus clone VMRC5-486H16, WORKING ...    50   0.022  3
(AC197727) Zea mays chromosome UNKNOWN clone CH201-219I11; Z...    44   0.022  2
(DT052647) COT_FF_A06 Fiber and Ovule of Xu-142 Lambda Zap E...    44   0.022  2
(DT052254) COT_EV_G01 Fiber and Ovule of Xu-142 Lambda Zap E...    44   0.022  2
(AC219163) Zea mays chromosome 2 clone CH201-418A5; ZMMBBc04...    46   0.022  4
(CR753868) Zebrafish DNA sequence from clone DKEY-119J14 in ...    44   0.022  3
(AL935034) Zebrafish DNA sequence from clone CH211-160A3 in ...    48   0.023  2
(AC231542) Zea mays chromosome 1 clone CH201-448K22; ZMMBBc0...    46   0.023  2
(AC117285) Rattus norvegicus clone CH230-379D1, *** SEQUENCI...    52   0.023  2
(BX323836) Zebrafish DNA sequence from clone CH211-249D6 in ...    52   0.023  4
(ED791181) GM_WBb0174H24.f GM_WBb Glycine max genomic clone ...    44   0.024  2
(AL735302) Danio rerio genomic clone DKEY-1K15, genomic surv...    44   0.024  2
(AC203324) Zea mays chromosome 5 clone CH201-168H11; ZMMBBc0...    44   0.024  2
(AU284548) Dictyostelium discoideum gamete cDNA clone:FC-BC1...    44   0.024  2
(CR854983) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.024  5
(AM460664) Vitis vinifera contig VV78X003915.21, whole genom...    46   0.025  2
(DT471209) WS01212.BR_P05 PT-GT-FL-A-3 Populus trichocarpa c...    50   0.026  2
(AM446979) Vitis vinifera contig VV78X030238.4, whole genome...    44   0.026  2
(CU845048) A BAC library has been constructed from PN40024 g...    44   0.026  2
(ES566177) TPAF-aab26d03.g1 T.spiralis_EST Trichinella spira...    50   0.027  2
(CK574471) 2673 Plasmodium yoelii liver stage LCM cDNA libra...    42   0.027  2
(ED659004) GM_WBa0080C21.r GM_WBa Glycine max genomic clone ...    44   0.027  2
(AC115493) Rattus norvegicus clone CH230-191O3, WORKING DRAF...    44   0.027  2
(ER811406) PPTGP55TR Solanum tuberosum RHPOTKEY BAC ends Sol...    46   0.028  2
(DT079918) AGENCOURT_56168897 NIH_ZGC_7 Danio rerio cDNA clo...    44   0.028  2
(AC023863) Homo sapiens chromosome 2 clone RP11-432J20 map 2...    44   0.028  3
(AR551000) Sequence 6131 from patent US 6747137.                   52   0.028  2
(AM457229) Vitis vinifera contig VV78X172796.5, whole genome...    44   0.029  2
(EX480580) EST_lsal_evj_790502 lsalevj mixed_tissue_mixed_st...    48   0.029  2
(EL495989) F08_PFBAMHI-M-T3-PLATE34A.AB1 Blood stage Plasmod...    42   0.029  2
(GH169254) Nas87_G11_2005-01-28_083.ab1 Nasturtium 22 days p...    36   0.030  2
(GH168547) Nas74_E02_2005-01-12_008.ab1 Nasturtium 22 days p...    36   0.030  2
(GH165504) Nas41_H10_2004-12-22_066.ab1 Nasturtium 22 days p...    36   0.030  2
(GD191259) G1045P380FB24.T1 Aplysia californica Pooled Norma...    44   0.030  2
(GH166637) Nas54_A09_2005-01-08_079.ab1 Nasturtium 22 days p...    36   0.030  2
(GH166674) Nas54_D10_2005-01-08_074.ab1 Nasturtium 22 days p...    36   0.030  2
(AC178009) Strongylocentrotus purpuratus clone R3-3052N03, W...    48   0.030  3
(GH170326) Nas108_H05_2005-02-07_033.ab1 Nasturtium 22 days ...    36   0.030  2
(GH170608) Nas109_H05_2005-02-08_033.ab1 Nasturtium 22 days ...    36   0.030  2
(GH166409) Nas51_F05_2005-01-09_037.ab1 Nasturtium 22 days p...    36   0.030  2
(GH166057) Nas37_H03_2005-01-08_017.ab1 Nasturtium 22 days p...    36   0.030  2
(AC167232) Mus musculus  BAC RP24-496C19 (Roswell Park Cance...    44   0.030  3
(AC198909) Rhesus Macaque  BAC CH250-196D17 () complete sequ...    46   0.030  3
(EL494524) D01_PFBAMHI-M-T3-PLATE25A.AB1 Blood stage Plasmod...    50   0.030  2
(AC130800) Medicago truncatula clone mth2-36b7, complete seq...    46   0.031  4
(ER863696) PPTD172TF Solanum tuberosum RHPOTKEY BAC ends Sol...    46   0.031  2
(ED625743) GM_WBa0023G05.f GM_WBa Glycine max genomic clone ...    44   0.031  2
(ED620330) GM_WBa0015A21.r GM_WBa Glycine max genomic clone ...    44   0.031  2
(GH162030) NAS_2_H05_2004-10-15_033.ab1 Nasturtium 22 days p...    36   0.031  2
(CT573221) Zebrafish DNA sequence from clone CH211-201A19 in...    44   0.031  4
(FK932604) EST_lsal_evj_952880 lsalevj mixed_tissue_mixed_st...    48   0.031  2
(BM027182) GIT0000487 Root-induced cDNA library from Glomus ...    44   0.031  3
(FI076121) CHO_OF7353xm12r1.ab1 CHO_OF7 Nicotiana tabacum ge...    44   0.031  2
(ED670143) GM_WBa0102K09.f GM_WBa Glycine max genomic clone ...    44   0.031  2
(AZ206227) SP_0105_B1_E05_T7A Strongylocentrotus purpuratus,...    50   0.032  2
(FH731714) CHO_OF5112xh20r1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   0.032  2
(CV706638) UCRPT01_0008K07_r Poncirus trifoliata CTV-challen...    44   0.032  2
(BX539323) Zebrafish DNA sequence from clone DKEY-58P11 in l...    44   0.032  3
(FI046182) CHO_OF6482xe21f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   0.032  2
(CU104651) Zebrafish DNA sequence from clone CH73-285N21 in ...    44   0.032  2
(EL493919) C01_PFBAMHI-M-T3-PLATE31A.AB1 Blood stage Plasmod...    42   0.032  2
(EY373013) CAXA14322.fwd CAXA Helobdella robusta Subtracted ...    44   0.033  2
(AP009796) Lotus japonicus genomic DNA, chromosome 5, clone:...    44   0.033  3
(DY895200) CeleSEQ14974 Cunninghamella elegans pBluescript (...    44   0.035  2
(CW863138) she2h75-34.b_013.ab1 Whole-genome shotgun library...    44   0.035  2
(BM959283) PLATE_8_F01_11.AB1 GS Lambda-Triplex, 10 day germ...    44   0.036  3
(EF594314) Astatotilapia burtoni clone BAC 34I18 Hoxbb gene ...    52   0.036  1
(CU929309) Zebrafish DNA sequence from clone CH1073-458I1 in...    52   0.036  1
(CU927890) Zebrafish DNA sequence from clone CH73-356L14 in ...    52   0.036  1
(CU914812) Zebrafish DNA sequence from clone CH1073-306I5 in...    52   0.036  1
(CU694477) Zebrafish DNA sequence from clone CH1073-422H10 i...    52   0.036  1
(CU463255) Zebrafish DNA sequence from clone CH73-131K10 in ...    52   0.036  1
(CU463039) Zebrafish DNA sequence from clone CH73-389C16 in ...    52   0.036  1
(CU076078) Zebrafish DNA sequence from clone CH73-309L7 in l...    52   0.036  1
(CT737182) Zebrafish DNA sequence from clone DKEY-261J11.          52   0.036  1
(CT573188) Zebrafish DNA sequence from clone CH73-207N24 in ...    52   0.036  1
(CT025938) Zebrafish DNA sequence from clone CH211-72M2 in l...    52   0.036  1
(CR931724) Zebrafish DNA sequence from clone DKEY-191J10.          52   0.036  1
(CR927479) Zebrafish DNA sequence from clone CH73-111B21.          52   0.036  1
(CR925718) Zebrafish DNA sequence from clone CH211-287A22 in...    52   0.036  1
(CR854987) Zebrafish DNA sequence from clone CH211-185J22 in...    52   0.036  1
(CR848684) Zebrafish DNA sequence from clone DKEY-15N21 in l...    52   0.036  1
(CR847534) Zebrafish DNA sequence from clone DKEY-27E20 in l...    52   0.036  1
(CR788236) Zebrafish DNA sequence from clone DKEY-92F12 in l...    52   0.036  1
(CR762443) Zebrafish DNA sequence from clone DKEY-3A5 in lin...    52   0.036  1
(CR735102) Zebrafish DNA sequence from clone DKEYP-8H9 in li...    52   0.036  1
(CR394535) Zebrafish DNA sequence from clone CH211-198P19 in...    52   0.036  1
(CR391975) Zebrafish DNA sequence from clone CH211-276C20 in...    52   0.036  1
(CR387932) Zebrafish DNA sequence from clone CH211-272B8 in ...    52   0.036  1
(CR381538) Zebrafish DNA sequence from clone CH211-87B12 in ...    52   0.036  1
(CR352332) Zebrafish DNA sequence from clone CH211-151K15 in...    52   0.036  1
(BX936451) Zebrafish DNA sequence from clone CH211-201F1 in ...    52   0.036  1
(BX897661) Zebrafish DNA sequence from clone DKEY-261N7 in l...    52   0.036  1
(BX664631) Zebrafish DNA sequence from clone DKEY-28H18 in l...    52   0.036  1
(BX649528) Zebrafish DNA sequence from clone DKEY-19F4 in li...    52   0.036  1
(BX571809) Zebrafish DNA sequence from clone CH211-222G23 in...    52   0.036  1
(BX548068) Zebrafish DNA sequence from clone DKEYP-53E7 in l...    52   0.036  1
(BX511037) Zebrafish DNA sequence from clone DKEY-66N24 in l...    52   0.036  1
(BX323543) Zebrafish DNA sequence from clone DKEYP-67E1 in l...    52   0.036  1
(BX323087) Zebrafish DNA sequence from clone CH211-212J22 in...    52   0.036  1
(BX322617) Zebrafish DNA sequence from clone DKEY-33D4.            52   0.036  1
(BX005464) Zebrafish DNA sequence from clone DKEY-24J21.           52   0.036  1
(BX005349) Zebrafish DNA sequence from clone DKEY-111D8 in l...    52   0.036  1
(BX005323) Zebrafish DNA sequence from clone DKEY-11F12 in l...    52   0.036  1
(BX005310) Zebrafish DNA sequence from clone CH211-214J2 in ...    52   0.036  1
(AL953881) Zebrafish DNA sequence from clone CH211-208N2 in ...    52   0.036  1
(AL935333) Zebrafish DNA sequence from clone CH211-198I18 in...    52   0.036  1
(AL845282) Zebrafish DNA sequence from clone DKEY-28P18 in l...    52   0.036  1
(G38890) TA102 Plasmodium falciparum haploid Plasmodium falc...    52   0.036  1
(BV047029) S212P6317FE5.T0 CZECHII/Ei Mus musculus STS genom...    52   0.036  1
(CT025549) Mouse DNA sequence from clone RP24-235K10 on chro...    52   0.036  1
(CT009539) Mouse DNA sequence from clone RP23-10G6 on chromo...    52   0.036  1
(AP003156) Mus musculus genomic DNA, chromosome 16q clone:RP...    52   0.036  1
(AP003150) Mus musculus genomic DNA, chromosome 16q clone:RP...    52   0.036  1
(AL844157) Mouse DNA sequence from clone RP24-313C24 on chro...    52   0.036  1
(AL731660) Mouse DNA sequence from clone RP23-43E15 on chrom...    52   0.036  1
(AL606934) Mouse DNA sequence from clone RP23-138L21 on chro...    52   0.036  1
(AC195488) Mus musculus BAC clone RP24-194J8 from chromosome...    52   0.036  1
(AC195265) Mus musculus BAC clone RP23-188F24 from chromosom...    52   0.036  1
(AC193220) Mus musculus BAC clone RP24-366D9 from chromosome...    52   0.036  1
(AC192473) Mus musculus BAC clone RP23-2H19 from chromosome ...    52   0.036  1
(AC192089) Mus musculus BAC clone RP23-51D4 from chromosome ...    52   0.036  1
(AC190173) Mus musculus chromosome 14 clone RP24-80K11, comp...    52   0.036  1
(AC188089) Mus musculus chromosome 14 clone RP23-274E2, comp...    52   0.036  1
(AC188087) Mus musculus chromosome 14 clone CH25-30L6, compl...    52   0.036  1
(AC186757) Mus musculus BAC clone RP23-388I12 from chromosom...    52   0.036  1
(AC186378) Mus musculus BAC clone RP24-547N23 from chromosom...    52   0.036  1
(AC174797) Mus musculus BAC clone RP24-216A12 from chromosom...    52   0.036  1
(AC171176) Mus musculus chromosome 3, clone wi1-2063J20, com...    52   0.036  1
(AC168071) Mus musculus BAC clone RP23-97D14 from chromosome...    52   0.036  1
(AC167722) Mus musculus BAC clone RP23-71L2 from chromosome ...    52   0.036  1
(AC163499) Mus musculus chromosome 5, clone RP23-250F1, comp...    52   0.036  1
(AC162942) Mus musculus BAC clone RP23-80K12 from chromosome...    52   0.036  1
(AC161869) Mus musculus BAC clone RP23-377G24 from chromosom...    52   0.036  1
(AC158358) Mus musculus BAC clone RP23-429K3 from chromosome...    52   0.036  1
(AC154691) Mus musculus BAC clone RP24-336F24 from chromosom...    52   0.036  1
(AC154546) Mus musculus BAC clone RP23-431I7 from chromosome...    52   0.036  1
(AC154313) Mus musculus BAC clone RP23-354M21 from chromosom...    52   0.036  1
(AC154193) Mus musculus BAC clone RP24-398A6 from chromosome...    52   0.036  1
(AC152888) Mus musculus BAC clone RP23-338C22 from chromosom...    52   0.036  1
(AC148988) Mus musculus BAC clone RP23-85B15 from chromosome...    52   0.036  1
(AC141630) Mus musculus BAC clone RP24-243P7 from chromosome...    52   0.036  1
(AC140467) Mus musculus BAC clone RP24-393I9 from chromosome...    52   0.036  1
(AC140297) Mus musculus BAC clone RP24-313L21 from chromosom...    52   0.036  1
(AC136642) Mus musculus BAC clone RP23-401J21 from 14, compl...    52   0.036  1
(AC132423) Mus musculus BAC clone RP23-303C8 from 14, comple...    52   0.036  1
(AC132115) Mus musculus BAC clone RP24-146A13 from 1, comple...    52   0.036  1
(AC131650) Mus musculus BAC clone RP24-97G3 from chromosome ...    52   0.036  1
(AC126261) Mus musculus BAC clone RP23-340H19 from 6, comple...    52   0.036  1
(AC125537) Mus musculus BAC clone RP24-165M1 from chromosome...    52   0.036  1
(AC124714) Mus musculus BAC clone RP24-128K11 from chromosom...    52   0.036  1
(AC122785) Mus musculus chromosome 3, clone RP24-247G11, com...    52   0.036  1
(AC122520) Mus musculus BAC clone RP24-470M22 from 6, comple...    52   0.036  1
(AC122317) Mus musculus BAC clone RP23-304C21 from 12, compl...    52   0.036  1
(AC121567) Mus musculus BAC clone RP23-225D14 from 14, compl...    52   0.036  1
(AC120877) Mus musculus chromosome 6, clone RP24-548D19, com...    52   0.036  1
(AC118017) Mus musculus chromosome 7, clone RP23-457C1, comp...    52   0.036  1
(AC101850) Mus musculus chromosome 5, clone RP23-269D16, com...    52   0.036  1
(AC091262) Mus musculus chromosome 9, clone RP23-38G1, compl...    52   0.036  1
(AC209448) Macaca mulatta Y BAC CH250-308C23 (Children's Hos...    52   0.036  1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ...    52   0.036  1
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ...    52   0.036  1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    52   0.036  1
(AP005531) Oryza sativa Japonica Group genomic DNA, chromoso...    52   0.036  1
(AP005505) Oryza sativa Japonica Group genomic DNA, chromoso...    52   0.036  1
(AM488301) Vitis vinifera contig VV78X203912.6, whole genome...    52   0.036  1
(AM486264) Vitis vinifera contig VV78X157418.8, whole genome...    52   0.036  1
(AM483954) Vitis vinifera, whole genome shotgun sequence, co...    52   0.036  1
(AM474304) Vitis vinifera contig VV78X275613.34, whole genom...    52   0.036  1
(AM465185) Vitis vinifera contig VV78X036118.10, whole genom...    52   0.036  1
(AM464548) Vitis vinifera contig VV78X161319.3, whole genome...    52   0.036  1
(AM463568) Vitis vinifera contig VV78X131347.16, whole genom...    52   0.036  1
(AM461219) Vitis vinifera contig VV78X105535.5, whole genome...    52   0.036  1
(AM460925) Vitis vinifera contig VV79X007175.3, whole genome...    52   0.036  1
(AM453842) Vitis vinifera contig VV78X058882.7, whole genome...    52   0.036  1
(AM452053) Vitis vinifera contig VV78X242738.14, whole genom...    52   0.036  1
(AM448960) Vitis vinifera contig VV78X217741.6, whole genome...    52   0.036  1
(AM448016) Vitis vinifera, whole genome shotgun sequence, co...    52   0.036  1
(AM445052) Vitis vinifera contig VV78X191968.2, whole genome...    52   0.036  1
(AM436819) Vitis vinifera contig VV78X277344.3, whole genome...    52   0.036  1
(AM434610) Vitis vinifera contig VV78X221375.7, whole genome...    52   0.036  1
(AM429300) Vitis vinifera contig VV78X204034.6, whole genome...    52   0.036  1
(AC213922) Populus trichocarpa clone POP037-A02, complete se...    52   0.036  1
(AR546896) Sequence 2027 from patent US 6747137.                   52   0.036  1
(U72236) Dictyostelium discoideum ModA (modA) gene, complete...    52   0.036  1
(FM162572) Trypanosoma brucei Lister 427 surface glycoprotei...    52   0.036  1
(EF523383) Plasmodium falciparum multidrug resistance-associ...    52   0.036  1
(CU672261) H.melpomene DNA sequence from clone AEHM-19L14.         52   0.036  1
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    52   0.036  1
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    52   0.036  1
(AF362368) Dictyostelium discoideum histidine kinase DhkF (d...    52   0.036  1
(AF072511) Illex argentinus microsatellites Ia121a and Ia121b.     52   0.036  1
(AF010515) Plasmodium falciparum microsatellite TA102 sequence.    52   0.036  1
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    52   0.036  1
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    52   0.036  1
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    52   0.036  1
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    52   0.036  1
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    52   0.036  1
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    52   0.036  1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    52   0.036  1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    52   0.036  1
(AL390954) Human DNA sequence from clone RP11-521L15 on chro...    52   0.036  1
(AC187652) Homo sapiens chromosome 7 clone WI2-2189I4, compl...    52   0.036  1
(AC162032) Mus musculus chromosome 8 clone RP23-299I19 map 8...    52   0.036  1
(AC161696) Bos taurus clone CH240-108N11, WORKING DRAFT SEQU...    52   0.036  1
(AC155208) Atelerix albiventris clone LB4-364E23, WORKING DR...    52   0.036  1
(AC149198) Mus musculus chromosome 14 clone RP23-293D11 map ...    52   0.036  1
(AC141798) Apis mellifera clone CH224-61C22, *** SEQUENCING ...    52   0.036  1
(AC141713) Apis mellifera clone CH224-56H1, *** SEQUENCING I...    52   0.036  1
(AC136419) Rattus norvegicus clone CH230-7O3, *** SEQUENCING...    52   0.036  1
(AC134950) Danio rerio strain Tue clone CH211-265K12, WORKIN...    52   0.036  1
(AC133986) Rattus norvegicus clone CH230-2J9, WORKING DRAFT ...    52   0.036  1
(AC132797) Rattus norvegicus clone CH230-9L10, *** SEQUENCIN...    52   0.036  1
(AC128493) Rattus norvegicus clone CH230-14B11, *** SEQUENCI...    52   0.036  1
(AC125911) Rattus norvegicus clone CH230-95C23, *** SEQUENCI...    52   0.036  1
(AC121170) Rattus norvegicus clone CH230-329O11, WORKING DRA...    52   0.036  1
(AC121166) Rattus norvegicus clone CH230-115J17, *** SEQUENC...    52   0.036  1
(AC120703) Rattus norvegicus clone CH230-160C24, *** SEQUENC...    52   0.036  1
(AC112850) Rattus norvegicus clone CH230-318H15, WORKING DRA...    52   0.036  1
(AC106135) Rattus norvegicus clone CH230-232G24, *** SEQUENC...    52   0.036  1
(AC102996) Rattus norvegicus clone CH230-108N14, WORKING DRA...    52   0.036  1
(AC101618) Mus musculus clone RP23-199B12, LOW-PASS SEQUENCE...    52   0.036  1
(AC098382) Rattus norvegicus clone CH230-2E13, *** SEQUENCIN...    52   0.036  1
(AC098036) Rattus norvegicus clone CH230-90L12, *** SEQUENCI...    52   0.036  1
(AC097680) Rattus norvegicus clone CH230-92A19, *** SEQUENCI...    52   0.036  1
(AC096840) Rattus norvegicus clone CH230-1I21, *** SEQUENCIN...    52   0.036  1
(AC096292) Rattus norvegicus clone CH230-38P24, *** SEQUENCI...    52   0.036  1
(FP102463) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(FP016053) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CU929222) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CU914183) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.036  1
(CU855793) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CU693374) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CU571044) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.036  1
(AC094483) Rattus norvegicus clone CH230-4B14, *** SEQUENCIN...    52   0.036  1
(AC094369) Rattus norvegicus clone CH230-3O4, *** SEQUENCING...    52   0.036  1
(AC094334) Rattus norvegicus clone CH230-3J9, *** SEQUENCING...    52   0.036  1
(AC093959) Rattus norvegicus clone CH230-3B9, WORKING DRAFT ...    52   0.036  1
(AC073784) Mus musculus clone RP23-412G23, WORKING DRAFT SEQ...    52   0.036  1
(AC055823) Homo sapiens clone RP11-45A9, WORKING DRAFT SEQUE...    52   0.036  1
(CU467890) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    52   0.036  1
(CT956003) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CT571253) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    52   0.036  1
(CT027730) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CT027720) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CR933819) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CR931786) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CR926138) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CR925897) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CR855304) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(CR751231) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    52   0.036  1
(BX322572) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    52   0.036  1
(AL844507) Plasmodium falciparum chromosome 8.                     52   0.036  1
(AL844506) Plasmodium falciparum chromosome  7.                    52   0.036  1
(AC217827) Solanum tuberosum chromosome unknown clone RHPOTK...    52   0.036  1
(AC209834) Zea mays chromosome 5 clone CH201-47M8; ZMMBBc004...    52   0.036  1
(AC209449) Macaca mulatta clone CH250-109I4, WORKING DRAFT S...    52   0.036  1
(AC207617) Zea mays chromosome 5 clone CH201-105I14; ZMMBBc0...    52   0.036  1
(AC203759) Zea mays chromosome 4 clone CH201-365C14; ZMMBBc0...    52   0.036  1
(AC201182) Strongylocentrotus purpuratus clone R3-14O1, WORK...    52   0.036  1
(AC201179) Strongylocentrotus purpuratus clone R3-14N12, WOR...    52   0.036  1
(AC200979) Strongylocentrotus purpuratus clone R3-12A2, WORK...    52   0.036  1
(AC200275) Mus musculus chromosome 14 clone RP24-565B13, WOR...    52   0.036  1
(AC198605) Zea mays chromosome 10 clone CH201-22H18; ZMMBBc0...    52   0.036  1

>(AU060844) Dictyostelium discoideum slug cDNA, clone SLB676.
          Length = 522

 Score =  474 bits (239), Expect(2) = 0.0
 Identities = 239/239 (100%)
 Strand = Plus / Plus


Query: 283 aatacaaactatcaaacatcaccaaatattccatcgaatcaacaagttggtacatttcaa 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aatacaaactatcaaacatcaccaaatattccatcgaatcaacaagttggtacatttcaa 342


Query: 343 gttggtggtagtggtgtcggtagtaatttaataacaatgaatccatcattaaatgcaaat 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gttggtggtagtggtgtcggtagtaatttaataacaatgaatccatcattaaatgcaaat 402


Query: 403 acaagtagtgaaaatataatgttaactgaaaaagaaattagaattgaatgtggtaatttc 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acaagtagtgaaaatataatgttaactgaaaaagaaattagaattgaatgtggtaatttc 462


Query: 463 aatttattcattggtatggatacaaaagttaaagaagataataataataataataataa 521
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aatttattcattggtatggatacaaaagttaaagaagataataataataataataataa 521

 Score =  315 bits (159), Expect(2) = 0.0
 Identities = 159/159 (100%)
 Strand = Plus / Plus


Query: 32  ttgaaaattcagatgatccagaagaaattcatagaaaattcataataaattgtacgaatc 91
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32  ttgaaaattcagatgatccagaagaaattcatagaaaattcataataaattgtacgaatc 91


Query: 92  aattaaataaagctcaaaaatatcaattcaattatgaaatttttgaacaattatcaaaag 151
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  aattaaataaagctcaaaaatatcaattcaattatgaaatttttgaacaattatcaaaag 151


Query: 152 aagtctcaactataaacacctcaaatagtcaaaatttaa 190
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagtctcaactataaacacctcaaatagtcaaaatttaa 190

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 768,791,971
Number of extensions: 58227598
Number of successful extensions: 11069498
Number of sequences better than 10.0: 149469
Length of query: 869
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 845
Effective length of database: 99,340,224,878
Effective search space: 83942490021910
Effective search space used: 83942490021910
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U01148-1 (Contig-U01148-1Q) /CSM_Contig/Contig-U01148-1Q.Seq.d
         (869 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WH4) RecName: Full=Putative mediator of RNA polymerase II tr...   239   7e-62

>(Q54WH4) RecName: Full=Putative mediator of RNA polymerase II
           transcription subunit 17 homolog;
          Length = 856

 Score =  239 bits (611), Expect = 7e-62
 Identities = 124/156 (79%), Positives = 124/156 (79%)
 Frame = +1

Query: 34  ENSDDPEEIHRKFIINCTNQLNKAQKYQFNYEIFEQLSKEVSTINTSNSQNLXXXXXXXX 213
           ENSDDPEEIHRKFIINCTNQLNKAQKYQFNYEIFEQLSKEVSTINTSNSQNL
Sbjct: 421 ENSDDPEEIHRKFIINCTNQLNKAQKYQFNYEIFEQLSKEVSTINTSNSQNLIGGGIGGV 480

Query: 214 XXXXXXXXXXXXXXXXXXXXXXXXTNYQTSPNIPSNQQVGTFQVGGSGVGSNLITMNPSL 393
                                   TNYQTSPNIPSNQQVGTFQVGGSGVGSNLITMNPSL
Sbjct: 481 NIGGGNVGVGGNVGGNVGGGGGGNTNYQTSPNIPSNQQVGTFQVGGSGVGSNLITMNPSL 540

Query: 394 NANTSSENIMLTEKEIRIECGNFNLFIGMDTKVKED 501
           NANTSSENIMLTEKEIRIECGNFNLFIGMDTKVKED
Sbjct: 541 NANTSSENIMLTEKEIRIECGNFNLFIGMDTKVKED 576

 Score = 42.4 bits (98), Expect = 0.020
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 624 RNYQIEKFFKGLVDEISNK 680
           RNYQIEKFFKGLVDEISNK
Sbjct: 838 RNYQIEKFFKGLVDEISNK 856

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 660,612,635
Number of extensions: 7140422
Number of successful extensions: 18184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18178
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 162
Effective length of database: 640,137,871
Effective search space: 103702335102
Effective search space used: 103702335102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.56  gvh: 0.33  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U01148-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0