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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05390-1
Contig ID Contig-U05390-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05390-1 (Contig-U05390-1Q) /CSM_Contig/Contig-U05390-1Q.Seq.d
AACATGCACAAAATATTTAAAAAATAGAATAGAACAACTTTCTTTCAGAT
CATGTAAAAAAAAAAAAAAAGAAAAAAAAGAATTTGTTGTCTTTAATTTT
GGTAACGGGTCAAATAGAATATTATTATTTCTAAATCTTCTGACAAGTGA
TGATTATTATTATTTTAAAATTTTTTTTTTTTTTAAAAAAAAAAAAAAAC
TATTTAAATAAAAAAAAAAATAATAAAATATAAAATATAAAATA
Gap no gap
Contig length 244
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U05390
List of clone(s) 

est1=SSH765F,1,245
Translated Amino Acid sequence 
TCTKYLKNRIEQLSFRSCKKKKKEKKEFVVFNFGNGSNRILLFLNLLTSDDYYYFKIFFF
FKKKKKLFK*kkk**nikyki
Translated Amino Acid sequence (All Frames) 
Frame A:
nmhkifkk*nrttffqim*kkkkrkkriccl*fw*rvk*niiiskssdk**lllf*nfff
f*kkkkti*ikkkiikyki*n


Frame B:
TCTKYLKNRIEQLSFRSCKKKKKEKKEFVVFNFGNGSNRILLFLNLLTSDDYYYFKIFFF
FKKKKKLFK*kkk**nikyki


Frame C:
haqni*kie*nnflsdhvkkkkkkkknllslilvtgqieyyyf*if*qvmiiiilkffff
lkkkknylnkkknnki*nik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05390-1 (Contig-U05390-1Q)
/CSM_Contig/Contig-U05390-1Q.Seq.d
         (244 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05390-1 (Contig-U05390-1Q) /CSM_Contig/Conti...   206  8e-54
Contig-U13105-1 (Contig-U13105-1Q) /CSM_Contig/Conti...    46  2e-05
Contig-U10001-1 (Contig-U10001-1Q) /CSM_Contig/Conti...    46  2e-05
Contig-U06665-1 (Contig-U06665-1Q) /CSM_Contig/Conti...    46  2e-05
Contig-U14377-1 (Contig-U14377-1Q) /CSM_Contig/Conti...    44  7e-05
Contig-U14004-1 (Contig-U14004-1Q) /CSM_Contig/Conti...    44  7e-05
Contig-U12216-1 (Contig-U12216-1Q) /CSM_Contig/Conti...    44  7e-05
Contig-U06787-1 (Contig-U06787-1Q) /CSM_Contig/Conti...    44  7e-05
Contig-U02000-1 (Contig-U02000-1Q) /CSM_Contig/Conti...    44  7e-05
Contig-U13864-1 (Contig-U13864-1Q) /CSM_Contig/Conti...    36  0.016

>Contig-U05390-1 (Contig-U05390-1Q) /CSM_Contig/Contig-U05390-1Q.Seq.d
          Length = 244

 Score =  206 bits (104), Expect = 8e-54
 Identities = 104/104 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  gaatttgttgtctttaattttggtaacgggtcaaatagaatattattatttctaaatctt 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  gaatttgttgtctttaattttggtaacgggtcaaatagaatattattatttctaaatctt 139

                                                       
Query: 140 ctgacaagtgatgattattattattttaaaattttttttttttt 183
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ctgacaagtgatgattattattattttaaaattttttttttttt 183


 Score =  109 bits (55), Expect = 1e-24
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                 
Query: 1  aacatgcacaaaatatttaaaaaatagaatagaacaactttctttcagatcatgt 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aacatgcacaaaatatttaaaaaatagaatagaacaactttctttcagatcatgt 55


>Contig-U13105-1 (Contig-U13105-1Q) /CSM_Contig/Contig-U13105-1Q.Seq.d
          Length = 129

 Score = 46.1 bits (23), Expect = 2e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 153 attattattattttaaaattttttttttttt 183
           |||||||||||||| || |||||||||||||
Sbjct: 65  attattattatttttaatttttttttttttt 95


 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 ttttaaaattttttttttttt 183
           |||||||||||||||||||||
Sbjct: 97  ttttaaaattttttttttttt 117


>Contig-U10001-1 (Contig-U10001-1Q) /CSM_Contig/Contig-U10001-1Q.Seq.d
          Length = 1352

 Score = 46.1 bits (23), Expect = 2e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 153  attattattattttaaaattttttttttttt 183
            |||||| |||||||||||||||| |||||||
Sbjct: 1314 attatttttattttaaaatttttattttttt 1284


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,743
Number of Sequences: 6905
Number of extensions: 99743
Number of successful extensions: 75165
Number of sequences better than 10.0: 2294
length of query: 244
length of database: 5,674,871
effective HSP length: 15
effective length of query: 229
effective length of database: 5,571,296
effective search space: 1275826784
effective search space used: 1275826784
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.19
Homology vs DNA 
Query= Contig-U05390-1 (Contig-U05390-1Q) /CSM_Contig/Contig-U05390-1Q.Seq.d
         (244 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU073661) Dictyostelium discoideum slug cDNA, clone SSH765.      165   2e-63  2
(CR384071) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.33   3
(DU958865) 229128 Tomato MboI BAC Library Solanum lycopersic...    32   0.44   2
(AM459491) Vitis vinifera contig VV78X266878.3, whole genome...    46   0.60   1
(AC235410) Glycine max strain Williams 82 clone GM_WBb0128C2...    46   0.60   1
(CU041241) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.60   1
(ER474455) 1092963985445 Global-Ocean-Sampling_GS-35-01-01-1...    46   0.60   1
(AG372053) Mus musculus molossinus DNA, clone:MSMg01-177M04....    46   0.60   1
(CU914584) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.1    4
(CR354562) Zebrafish DNA sequence from clone DKEY-25B23 in l...    34   1.2    2
(BX004787) Zebrafish DNA sequence from clone DKEY-28B17 in l...    34   1.2    2
(CT573312) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   1.2    2
(CP001436) Borrelia valaisiana VS116 plasmid VS116_lp36, com...    32   1.3    5
(ED812940) ML__Ba0010E03f ML__Ba Mimulus lewisii genomic, ge...    32   1.6    2
(AC200892) Pongo abelii BAC clone CH276-400E4 from chromosom...    36   1.8    3
(AC200985) Strongylocentrotus purpuratus clone R3-12B17, WOR...    36   2.1    2
(AJ818365) Bos sp. EST, clone C0006012b06.                         30   2.2    3
(AC004028) Homo sapiens PAC clone RP4-800B9 from 7, complete...    38   2.3    3
(AC131161) Rattus norvegicus clone CH230-163E3, *** SEQUENCI...    40   2.4    3
(CU524145) Zebrafish DNA sequence from clone CH211-286C16 in...    44   2.4    1
(CR788308) Zebrafish DNA sequence from clone DKEY-192K19 in ...    44   2.4    1
(CR394544) Zebrafish DNA sequence from clone DKEY-117I6 in l...    44   2.4    1
(BX119966) Zebrafish DNA sequence from clone CH211-266N15.         44   2.4    1
(FJ169856) Rotavirus A strain 02V0002G3 segment 4, complete ...    44   2.4    1
(EU486961) Rotavirus A isolate Ch-04V0027G6 VP4 gene, comple...    44   2.4    1
(EU486960) Rotavirus A isolate Ch-03V0358F3 VP4 gene, comple...    44   2.4    1
(EU486959) Rotavirus A isolate Ch-03V0158G3 VP4 gene, comple...    44   2.4    1
(EU486956) Rotavirus A isolate Ch-02V0002G3 VP4 gene, comple...    44   2.4    1
(AC160161) Bos taurus clone CH240-80O6, WORKING DRAFT SEQUEN...    44   2.4    1
(AC151630) Didelphis virginiana clone LB3-28N9, WORKING DRAF...    44   2.4    1
(AC149647) Bos taurus clone CH240-68K2, WORKING DRAFT SEQUEN...    44   2.4    1
(AC148052) Carollia perspicillata clone 593F8, WORKING DRAFT...    44   2.4    1
(AC141717) Apis mellifera clone CH224-57G21, WORKING DRAFT S...    44   2.4    1
(AC129147) Rattus norvegicus clone CH230-333G11, WORKING DRA...    44   2.4    1
(AC127798) Rattus norvegicus clone CH230-104K24, *** SEQUENC...    44   2.4    1
(CU856509) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.4    1
(CU606884) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.4    1
(AC223905) Bos taurus clone CH240-454I15, WORKING DRAFT SEQU...    44   2.4    1
(AC183154) Bos taurus clone CH240-102J9, WORKING DRAFT SEQUE...    44   2.4    1
(AC170123) Bos taurus clone CH240-237M17, WORKING DRAFT SEQU...    44   2.4    1
(AC166019) Oryctolagus cuniculus clone LB1-258O23, WORKING D...    44   2.4    1
(FI029914) CHO_OF6943xg24f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   2.4    1
(BZ235061) CH230-333G11.TV CHORI-230 Segment 2 Rattus norveg...    44   2.4    1
(BZ223724) CH230-446C3.TV CHORI-230 Segment 2 Rattus norvegi...    44   2.4    1
(EB266255) MCCN20-F-133589-501 Normalized MCC Neurons Aplysi...    44   2.4    1
(DY664235) SS_MF_07_G01 SS_MF Senecio squalidus subsp. squal...    44   2.4    1
(DQ009125) Uncultured marine bacterium clone SPOTSOCT00_5m10...    44   2.4    1
(FD457890) EGGBG79TF Haematobia irritans eggs Haematobia irr...    34   2.5    2
(CU468317) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.5    4
(AF163865) Mus musculus alpha-synuclein (Snca) gene, complet...    34   3.1    4
(DL076399) TREATMENT OF NEURODEGENERATIVE DISEASE THROUGH IN...    34   3.1    4
(CS798971) Sequence 10 from Patent EP1832292.                      34   3.1    4
(CS791915) Sequence 10 from Patent EP1829547.                      34   3.1    4
(CS236146) Sequence 10 from Patent WO2005116212.                   34   3.1    4
(CQ824583) Sequence 10 from Patent WO2004047872.                   34   3.1    4
(AC181933) Strongylocentrotus purpuratus clone R3-1009F16, W...    36   3.6    2
(CU467879) Zebrafish DNA sequence from clone DKEY-197J19 in ...    42   4.2    4
(FN357515) Schistosoma mansoni genome sequence supercontig S...    40   4.3    4
(CU062528) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.4    2
(CT573006) Zebrafish DNA sequence from clone DKEY-33G13 in l...    32   4.5    2
(CU972471) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.8    2
(AM432265) Vitis vinifera contig VV78X079613.5, whole genome...    32   4.9    2
(CU928387) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   5.2    3
(AC220274) Bos taurus clone CH240-368E18, WORKING DRAFT SEQU...    40   5.2    2
(EL596890) He_pwd_0158A07_M13R Heliconius erato pooled wing ...    38   5.5    2
(AM474475) Vitis vinifera, whole genome shotgun sequence, co...    32   5.5    4
(CU841082) A BAC library has been constructed from PN40024 g...    32   6.1    2
(AG652187) Macaca fuscata fuscata DNA, clone: MSB2-067E03_R,...    34   6.2    2
(AC181798) Strongylocentrotus purpuratus clone R3-1029A15, W...    38   6.6    4
(FH539311) CHO_OF4769xg09f1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   6.9    2
(ER613431) 1093016327620 Global-Ocean-Sampling_GS-36-01-01-2...    36   7.0    2
(FI003966) CHO_OF6895xg21r1.ab1 CHO_OF6 Nicotiana tabacum ge...    38   7.1    2
(AC229704) Medicago truncatula clone mth2-31a3, WORKING DRAF...    36   7.1    3
(EJ862337) 1093018211063 Global-Ocean-Sampling_GS-30-02-01-1...    36   7.6    2
(CZ503513) GMW2-14N8a.g1 GMW2 Glycine max genomic, genomic s...    36   7.7    2
(FF565532) TT1BJ34TV Tetrahymena thermophila SB210 cDNA libr...    38   7.9    2
(AC168721) Strongylocentrotus purpuratus clone R3-3010O18, W...    36   8.3    4
(AC191164) Canis Familiaris chromosome 27, clone XX-53N21, c...    40   8.6    4
(AC152951) Mus musculus 10 BAC RP23-451J19 (Roswell Park Can...    38   8.8    4
(AC184562) Strongylocentrotus purpuratus clone R3-3013D1, WO...    36   9.2    4
(BX897712) Zebrafish DNA sequence from clone CH211-146A9 in ...    42   9.4    1
(BX571678) Zebrafish DNA sequence from clone DKEY-271J15 in ...    42   9.4    1
(BX324135) Zebrafish DNA sequence from clone DKEY-16J16.           42   9.4    1
(G49847) SHGC-83222 Human Homo sapiens STS genomic, sequence...    42   9.4    1
(AL845485) Mouse DNA sequence from clone RP23-237D23 on chro...    42   9.4    1
(AC192217) Pan troglodytes BAC clone CH251-1H14 from chromos...    42   9.4    1
(AC188685) Pan troglodytes BAC clone CH251-640D14 from chrom...    42   9.4    1
(CU915751) S.lycopersicum DNA sequence from clone LE_HBa-74N1.     42   9.4    1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    42   9.4    1
(AM477985) Vitis vinifera contig VV78X027538.2, whole genome...    42   9.4    1
(AM451412) Vitis vinifera contig VV78X243067.6, whole genome...    42   9.4    1
(AL954854) Oryza sativa chromosome 12, . BAC OSJNBa0080D17 o...    42   9.4    1
(AC235804) Solanum lycopersicum chromosome 3 clone C03HBa022...    42   9.4    1
(AC215479) Solanum lycopersicum chromosome 2 clone C02SLm004...    42   9.4    1
(AC215406) Solanum lycopersicum chromosome 2 clone C02HBa016...    42   9.4    1
(AC189303) Brassica rapa subsp. pekinensis clone KBrB030F12,...    42   9.4    1
(FB596757) Sequence 12480 from Patent WO2004081186.                42   9.4    1
(CU457750) Wallaby DNA sequence from clone MEKBa-248E8.            42   9.4    1
(AP001862) Homo sapiens genomic DNA, chromosome 4q22-q24, cl...    42   9.4    1
(AL590286) Human DNA sequence from clone RP11-157L10 on chro...    42   9.4    1
(AL354942) Human DNA sequence from clone RP11-57O22 on chrom...    42   9.4    1
(AL049562) Human DNA sequence from clone RP6-86H19 on chromo...    42   9.4    1
(AC115088) Homo sapiens chromosome 11, clone RP11-792G9, com...    42   9.4    1
(AC093628) Homo sapiens BAC clone RP11-98N20 from 4, complet...    42   9.4    1
(AC078940) Homo sapiens BAC clone RP11-144B8 from 2, complet...    42   9.4    1
(AC004063) Homo sapiens chromosome 4 clone B32I8, complete s...    42   9.4    1
(AC000117) Homo sapiens BAC clone CTB-62A19 from 7, complete...    42   9.4    1
(AC128061) Rattus norvegicus clone CH230-97H2, *** SEQUENCIN...    42   9.4    1
(AC127822) Rattus norvegicus clone CH230-263P14, WORKING DRA...    42   9.4    1
(AC123399) Rattus norvegicus clone CH230-300M18, WORKING DRA...    42   9.4    1
(AC121163) Rattus norvegicus clone CH230-260I7, *** SEQUENCI...    42   9.4    1
(AC120659) Rattus norvegicus clone CH230-35G21, WORKING DRAF...    42   9.4    1
(AC115524) Rattus norvegicus strain Brown Norway clone RP31-...    42   9.4    1
(AC115491) Rattus norvegicus clone CH230-112M7, *** SEQUENCI...    42   9.4    1
(AC114417) Mus musculus clone RP23-356L3, WORKING DRAFT SEQU...    42   9.4    1
(AC107564) Rattus norvegicus clone CH230-104M20, *** SEQUENC...    42   9.4    1
(AC107550) Rattus norvegicus clone CH230-45O10, WORKING DRAF...    42   9.4    1
(AC105508) Rattus norvegicus clone CH230-240F24, *** SEQUENC...    42   9.4    1
(AC095404) Rattus norvegicus clone CH230-7B5, WORKING DRAFT ...    42   9.4    1
(FP102417) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   9.4    1
(FP102416) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   9.4    1
(FP085512) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.4    1
(CU914323) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.4    1
(CU856268) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.4    1
(CU582955) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.4    1
(CU571110) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.4    1
(CU570838) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.4    1
(CU466962) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.4    1
(CU062607) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.4    1
(CU041229) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    42   9.4    1
(CR396581) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   9.4    1
(AC231563) Choloepus hoffmanni clone CH281-127J20, WORKING D...    42   9.4    1
(AC223616) Bos taurus clone CH240-463M16, WORKING DRAFT SEQU...    42   9.4    1
(AC223585) Bos taurus clone CH240-464K8, WORKING DRAFT SEQUE...    42   9.4    1
(AC222378) Bos taurus clone CH240-416K24, WORKING DRAFT SEQU...    42   9.4    1
(AC218253) Bos taurus clone CH240-289J23, WORKING DRAFT SEQU...    42   9.4    1
(AC212629) Solanum lycopersicum chromosome 7 clone C07HBa010...    42   9.4    1
(AC204182) Nomascus leucogenys leucogenys clone CH271-261F15...    42   9.4    1
(AC192313) Atelerix albiventris clone LB4-505D4, WORKING DRA...    42   9.4    1
(AC187982) Canis lupus familiaris chromosome X clone XX-471I...    42   9.4    1
(AC181848) Strongylocentrotus purpuratus clone R3-1022D7, WO...    42   9.4    1
(AC181841) Strongylocentrotus purpuratus clone R3-1022H10, W...    42   9.4    1
(AC180864) Strongylocentrotus purpuratus clone R3-3026A24, W...    42   9.4    1
(AC180255) Strongylocentrotus purpuratus clone R3-32I21, WOR...    42   9.4    1
(AC179281) Strongylocentrotus purpuratus clone R3-45F13, WOR...    42   9.4    1
(AC178724) Strongylocentrotus purpuratus clone R3-12O10, WOR...    42   9.4    1
(AC178702) Strongylocentrotus purpuratus clone R3-12H9, WORK...    42   9.4    1
(AC178079) Strongylocentrotus purpuratus clone R3-3059O13, W...    42   9.4    1
(AC176276) Strongylocentrotus purpuratus clone R3-3060E15, W...    42   9.4    1
(AC012054) Homo sapiens chromosome 11 clone RP11-90G1 map 11...    42   9.4    1
(FI029993) CHO_OF6943xg24r1.ab1 CHO_OF6 Nicotiana tabacum ge...    42   9.4    1
(FH337387) CHO_OF4597xp24f1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   9.4    1
(FH337236) CHO_OF4597xp23f1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   9.4    1
(ET100959) QM0AAB18AF07RM1 CCER1 Citrus clementina genomic c...    42   9.4    1
(ET070857) QM0AAA4CG08RM1 CCL1 Citrus clementina genomic clo...    42   9.4    1
(ER484350) 1093015287775 Global-Ocean-Sampling_GS-35-01-01-1...    42   9.4    1
(ER442793) 1092963819187 Global-Ocean-Sampling_GS-35-01-01-1...    42   9.4    1
(AQ115566) RPCI11-57O22.TK RPCI-11 Homo sapiens genomic clon...    42   9.4    1
(EJ416571) 1093012186497 Global-Ocean-Sampling_GS-28-01-01-1...    42   9.4    1
(ED123025) AUAC-aal71b12.g1 Ascaris suum whole genome shotgu...    42   9.4    1
(ED013109) MUGQ_CH252P100J24Sp6_CN17_040 CHORI-252 Vervet Mo...    42   9.4    1
(DX545948) GH_MBb0062O08r GH_MBb Gossypium hirsutum genomic ...    42   9.4    1
(CU114209) Equus caballus GSS, BAC clone CH241-225H18, SP6 e...    42   9.4    1
(CE782270) tigr-gss-dog-17000317734835 Dog Library Canis lup...    42   9.4    1
(BZ177383) CH230-348B24.TV CHORI-230 Segment 2 Rattus norveg...    42   9.4    1
(CV464600) taj22h04.y1 Hydra EST UCI 5 ALP Hydra magnipapill...    42   9.4    1
(CK630363) AM0-AE0009-200602-021-C03 AE0009 Apis mellifera c...    42   9.4    1
(DQ508940) Debaryomyces hansenii mitochondrion, complete gen...    34   9.7    3
(AP001529) Homo sapiens genomic DNA, chromosome 18q22 clone:...    36   9.8    4

>(AU073661) Dictyostelium discoideum slug cDNA, clone SSH765.
          Length = 240

 Score =  165 bits (83), Expect(2) = 2e-63
 Identities = 83/83 (100%)
 Strand = Plus / Plus


Query: 80  gaatttgttgtctttaattttggtaacgggtcaaatagaatattattatttctaaatctt 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  gaatttgttgtctttaattttggtaacgggtcaaatagaatattattatttctaaatctt 139


Query: 140 ctgacaagtgatgattattatta 162
           |||||||||||||||||||||||
Sbjct: 140 ctgacaagtgatgattattatta 162

 Score =  109 bits (55), Expect(2) = 2e-63
 Identities = 55/55 (100%)
 Strand = Plus / Plus


Query: 1  aacatgcacaaaatatttaaaaaatagaatagaacaactttctttcagatcatgt 55
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aacatgcacaaaatatttaaaaaatagaatagaacaactttctttcagatcatgt 55

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 259,249,020
Number of extensions: 19043763
Number of successful extensions: 5730529
Number of sequences better than 10.0: 169
Length of query: 244
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 221
Effective length of database: 102,190,702,835
Effective search space: 22584145326535
Effective search space used: 22584145326535
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05390-1 (Contig-U05390-1Q) /CSM_Contig/Contig-U05390-1Q.Seq.d
         (244 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 201,388,938
Number of extensions: 2346158
Number of successful extensions: 2145
Number of sequences better than 10.0: 0
Number of HSP's gapped: 2145
Number of HSP's successfully gapped: 0
Length of query: 81
Length of database: 1,061,185,681
Length adjustment: 51
Effective length of query: 30
Effective length of database: 894,494,833
Effective search space: 26834844990
Effective search space used: 26834844990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.59  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.04
 nuc: 0.28  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U05390-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0