>Contig-U05385-1 (Contig-U05385-1Q) /CSM_Contig/Contig-U05385-1Q.Seq.d
ATAAACTAATAATAAAATGTTTAGTTTTTTAAAGAAACCTACTCCAGAGG
AGTTAGTAAAGAAATGGAAAAGAGAATTAAGAAGAGAAGATAGAGGTTTA
GATACTCAATTAAGAGCAATTGATATGCCAGGAAAAGAAAACAGTTAGAA
TGATTAAAGAAAGAGTTTAAGCAGGAGATCAAAAGAGTGCAAAAACATTA
GCAAAAGAGATTGTAAATAGTAGAAAAGCAAAAGAAAGAATATATACAGC
AAAAGCACAAATGAATTCAGTATCAATGCAATTACAAAGTAATTTAGCAA
TGACAAAAGTTCAAGGAAATTTAGCAAAATCAACAGAGATTATGAAAATG
ATGAATGATCTCATTAAATTACCCGAACTAAATAAAGTTATGATGGCAAT
GGGTTCAGAGATGACAAAAGCAGGTATAATGGAAGAGATGATTTCTGATG
TATTCGATATGCAAGGTGAAGATCTTGAAGAGGAAGCAGAAATGGAAGTT
AATAAAATTATGGATGAGATTTTAGTATCTGGTCCACAAGTTAGTTCAGC
ACCATTAGAAACTCATCAACAAGAAGAAGTTGTTCAAGAAAAACAAGAAG
ATAGTGAATTACTTGATCGTTTGAAAGCTTTAAAATCTTAAAATTTTGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACACCTAAAATCAAGAAA
AAAAAAACAAAAACTTTGCTATTTATTTTTTATTCTTAATTCCAAAATAA
CACACCTTTTGTATAAATACACCAATCAAATAAAAATAAAAAAAAAAAAC
TAAAAATAAATTTTTAAATAATCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

est1=SSH742F,1,291
est2=SSJ322E,4,653
est3=SSI816Z,74,680
est4=VSB746Z,240,854
est5=SSH742Z,405,657

kliikclvf*rnllqrs**rngken*eekiev*iln*eqlicqekktvrmikerv*AGDQ
KSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDL
IKLPELNKVMMAMGSEMTKAGIMEEMISDVFDMQGEDLEEEAEMEVNKIMDEILVSGPQV
SSAPLETHQQEEVVQEKQEDSELLDRLKALKS*nfekkkkkkkkkrkhlksrkkkqklcy
lffilnskithllykytnqikikkkn*k*ifk*skkkkkkkkk

Frame A:
in***nv*ffketysrgvskemekrikkrr*rfrysiksn*yarkrkqle*lkkefkqei
krvqkh*qkrl*ivekqkkeyiqqkhk*iqyqcnykvi*q*qkfkei*qnqqrl*k**mi
slnypn*ikl*wqwvqr*qkqv*wkr*flmysickvkilkrkqkwkliklwmrf*ylvhk
lvqhh*klinkkklfkknkkivnyliv*kl*nlkilkkkkkkkkkkent*nqekknknfa
iyflflipk*htfcintpik*k*kkktknkflnnqkkkkkkkkk


Frame B:
*tnnkmfsflkkptpeelvkkwkrelrredrgldtqlraidmpgkens*nd*rkslsrrs
keckniskrdck**kskrkniyskstnefsinaitk*fsndkssrkfskinrdyende*s
h*itrtk*sydgngfrddksryngrddf*ciryar*rs*rgsrngs**nyg*dfsiwsts
*fstirnsstrrscsrktrr**it*sfesfkilkf*kkkkkkkkkkktpkikkkktktll
fifys*fqnntpfv*ihqsnknkkkklkinf*iikkkkkkkkkk


Frame C:
kliikclvf*rnllqrs**rngken*eekiev*iln*eqlicqekktvrmikerv*AGDQ
KSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNLAMTKVQGNLAKSTEIMKMMNDL
IKLPELNKVMMAMGSEMTKAGIMEEMISDVFDMQGEDLEEEAEMEVNKIMDEILVSGPQV
SSAPLETHQQEEVVQEKQEDSELLDRLKALKS*nfekkkkkkkkkrkhlksrkkkqklcy
lffilnskithllykytnqikikkkn*k*ifk*skkkkkkkkk

Query= Contig-U05385-1 (Contig-U05385-1Q)
/CSM_Contig/Contig-U05385-1Q.Seq.d
         (853 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05385-1 (Contig-U05385-1Q) /CSM_Contig/Conti...  1285  0.0
Contig-U14535-1 (Contig-U14535-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U12746-1 (Contig-U12746-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U05178-1 (Contig-U05178-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U14087-1 (Contig-U14087-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U13938-1 (Contig-U13938-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U12533-1 (Contig-U12533-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U11739-1 (Contig-U11739-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U11136-1 (Contig-U11136-1Q) /CSM_Contig/Conti...    34  0.24

>Contig-U05385-1 (Contig-U05385-1Q) /CSM_Contig/Contig-U05385-1Q.Seq.d
          Length = 853

 Score = 1285 bits (648), Expect = 0.0
 Identities = 648/648 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaactaataataaaatgtttagttttttaaagaaacctactccagaggagttagtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataaactaataataaaatgtttagttttttaaagaaacctactccagaggagttagtaaa 60

                                                                       
Query: 61  gaaatggaaaagagaattaagaagagaagatagaggtttagatactcaattaagagcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaatggaaaagagaattaagaagagaagatagaggtttagatactcaattaagagcaat 120

                                                                       
Query: 121 tgatatgccaggaaaagaaaacagttagaatgattaaagaaagagtttaagcaggagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatatgccaggaaaagaaaacagttagaatgattaaagaaagagtttaagcaggagatc 180

                                                                       
Query: 181 aaaagagtgcaaaaacattagcaaaagagattgtaaatagtagaaaagcaaaagaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaagagtgcaaaaacattagcaaaagagattgtaaatagtagaaaagcaaaagaaagaa 240

                                                                       
Query: 241 tatatacagcaaaagcacaaatgaattcagtatcaatgcaattacaaagtaatttagcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatatacagcaaaagcacaaatgaattcagtatcaatgcaattacaaagtaatttagcaa 300

                                                                       
Query: 301 tgacaaaagttcaaggaaatttagcaaaatcaacagagattatgaaaatgatgaatgatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgacaaaagttcaaggaaatttagcaaaatcaacagagattatgaaaatgatgaatgatc 360

                                                                       
Query: 361 tcattaaattacccgaactaaataaagttatgatggcaatgggttcagagatgacaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcattaaattacccgaactaaataaagttatgatggcaatgggttcagagatgacaaaag 420

                                                                       
Query: 421 caggtataatggaagagatgatttctgatgtattcgatatgcaaggtgaagatcttgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caggtataatggaagagatgatttctgatgtattcgatatgcaaggtgaagatcttgaag 480

                                                                       
Query: 481 aggaagcagaaatggaagttaataaaattatggatgagattttagtatctggtccacaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aggaagcagaaatggaagttaataaaattatggatgagattttagtatctggtccacaag 540

                                                                       
Query: 541 ttagttcagcaccattagaaactcatcaacaagaagaagttgttcaagaaaaacaagaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttagttcagcaccattagaaactcatcaacaagaagaagttgttcaagaaaaacaagaag 600

                                                           
Query: 601 atagtgaattacttgatcgtttgaaagctttaaaatcttaaaattttg 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atagtgaattacttgatcgtttgaaagctttaaaatcttaaaattttg 648


 Score =  127 bits (64), Expect = 2e-29
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                       
Query: 714 ctttgctatttattttttattcttaattccaaaataacacaccttttgtataaatacacc 773
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctttgctatttattttttattcttaattccaaaataacacaccttttgtataaatacacc 773

               
Query: 774 aatc 777
           ||||
Sbjct: 774 aatc 777


>Contig-U14535-1 (Contig-U14535-1Q) /CSM_Contig/Contig-U14535-1Q.Seq.d
          Length = 614

 Score = 36.2 bits (18), Expect = 0.060
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 3   aaactaataataaaatgt 20
           ||||||||||||||||||
Sbjct: 506 aaactaataataaaatgt 523


>Contig-U12746-1 (Contig-U12746-1Q) /CSM_Contig/Contig-U12746-1Q.Seq.d
          Length = 642

 Score = 36.2 bits (18), Expect = 0.060
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 579 gttgttcaagaaaaacaagaag 600
           |||||| |||||||||||||||
Sbjct: 210 gttgttgaagaaaaacaagaag 231


 Score = 30.2 bits (15), Expect = 3.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 586 aagaaaaacaagaag 600
           |||||||||||||||
Sbjct: 244 aagaaaaacaagaag 258


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,972
Number of Sequences: 6905
Number of extensions: 12972
Number of successful extensions: 1708
Number of sequences better than 10.0: 208
length of query: 853
length of database: 5,674,871
effective HSP length: 16
effective length of query: 837
effective length of database: 5,564,391
effective search space: 4657395267
effective search space used: 4657395267
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U05385-1 (Contig-U05385-1Q) /CSM_Contig/Contig-U05385-1Q.Seq.d
         (853 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C90589) Dictyostelium discoideum slug cDNA, clone SSI816.        811   0.0    3
(C90931) Dictyostelium discoideum slug cDNA, clone SSJ322.        664   0.0    5
(AU262218) Dictyostelium discoideum vegetative cDNA clone:VS...   767   0.0    2
(AU038455) Dictyostelium discoideum slug cDNA, clone SSH742.      484   e-132  1
(AU073651) Dictyostelium discoideum slug cDNA, clone SSH742.      254   4e-83  2
(BJ444668) Dictyostelium discoideum cDNA clone:ddv57i02, 3' ...   127   9e-43  3
(DT705220) s13dFA52F01RT011_108966 Tall fescue, Festuca arun...    56   4e-04  2
(AU249157) Lolium multiflorum cDNA clone:LE005C10-5.               56   4e-04  2
(DT699124) s13dFA20F08LF063_114994 Tall fescue, Festuca arun...    56   4e-04  2
(DT685958) s13dFA62B02FM025_423227 Tall fescue, Festuca arun...    56   5e-04  2
(GO797674) CLS_cLiFpEfI12na_49a4_1_j08cLibkit5LD_E04 CLS_cLi...    56   6e-04  2
(GO793453) CLS_cLiFpEfI12na_24a4_1_l10cLibkit5LD_F05 CLS_cLi...    56   6e-04  2
(GO803193) CLS_cLiFpEfI12na_7a2_1_g24cLibkit5LD_D12 CLS_cLiF...    56   6e-04  2
(GO888580) RDD_cLiFpEfI12nb_15x1_1_E07_cLibkit5_C04 RDD_cLiF...    56   0.002  1
(DT706028) s13dFA50F06RT047_115860 Tall fescue, Festuca arun...    54   0.009  1
(GR175879) CBPG4919.b1 CBPG Mimulus guttatus IM62 roots, see...    36   0.031  3
(FK385424) 454GmaGlobSeed120056 Soybean Seeds Containing Glo...    52   0.037  1
(GR112222) CCBG5258.b1 CCBG Mimulus guttatus IM62 floral bud...    36   0.044  3
(GR009529) CCIC3159.b1 CCIC Mimulus guttatus IM62 roots (H) ...    36   0.044  3
(GR141334) CCBX21081.b1 CCBX Mimulus guttatus IM62 floral bu...    36   0.045  3
(GR043322) CCIC21178.b1 CCIC Mimulus guttatus IM62 roots (H)...    36   0.048  3
(GR142055) CCBX21665.b1 CCBX Mimulus guttatus IM62 floral bu...    36   0.049  3
(GR096086) CCIF22903.b1 CCIF Mimulus guttatus IM62 leaves (H...    36   0.049  3
(GR069532) CCIF8441.b1 CCIF Mimulus guttatus IM62 leaves (H)...    36   0.053  3
(GO915699) CMFMEb0001K01f CMFMEb Castanea mollissima cDNA, m...    46   0.086  2
(AC010966) Homo sapiens chromosome 18 clone RP11-117H18 map ...    46   0.090  3
(DT082496) 03-PTE-826 Salt-treated full-length cDNA library ...    50   0.15   1
(CK769083) Gm-r1030-3059 Gm-r1030 Glycine max cDNA clone Gm-...    50   0.15   1
(CK606483) gmrhRww6-12_H10_T7 Soybean root hair subtracted c...    50   0.15   1
(BQ630687) sap29h06.y1 Gm-c1082 Glycine max cDNA clone SOYBE...    50   0.15   1
(BM731240) sal69d10.y1 Gm-c1061 Glycine max cDNA clone SOYBE...    50   0.15   1
(BE211362) so40a04.y1 Gm-c1039 Glycine max cDNA clone GENOME...    50   0.15   1
(FK421232) 454GmaGlobSeed155864 Soybean Seeds Containing Glo...    50   0.15   1
(FK381006) 454GmaGlobSeed115638 Soybean Seeds Containing Glo...    50   0.15   1
(FK004489) GLMDG87TR JCVI-SOY2 Glycine max cDNA 5', mRNA seq...    50   0.15   1
(FK004488) GLMDG87TFB JCVI-SOY2 Glycine max cDNA 5', mRNA se...    50   0.15   1
(EV280916) GLNAY85TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq...    50   0.15   1
(EV273346) GLMBU40TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq...    50   0.15   1
(EV268677) GLMA930TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq...    50   0.15   1
(EV263745) GLLAA31TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq...    50   0.15   1
(AW279055) sg07c02.y1 Gm-c1019 Glycine max cDNA clone GENOME...    50   0.15   1
(AC007130) Homo sapiens BAC clone GS1-98E2 from 7, complete ...    34   0.16   6
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        38   0.16   14
(AC127879) Rattus norvegicus clone CH230-50A16, *** SEQUENCI...    40   0.48   5
(AC220902) Bos taurus clone CH240-341H10, WORKING DRAFT SEQU...    48   0.57   1
(BZ915581) CH240_58N9.TV CHORI-240 Bos taurus genomic clone ...    48   0.57   1
(AM790030) Nicotiana tabacum EST, clone nt005127048.               48   0.57   1
(CK136751) MM2_2_3_F08 Sugar beet 10-week GH root cDNA Beta ...    48   0.57   1
(FN165688) Homo sapiens EST, clone 277508_3226_0781.               48   0.57   1
(AC113109) Mus musculus chromosome 1 clone RP23-328A2 map 1,...    40   0.76   5
(AC178850) Strongylocentrotus purpuratus clone R3-26H13, WOR...    42   1.2    6
(BJ353817) Dictyostelium discoideum cDNA clone:dda51c17, 3' ...    36   1.6    2
(CU466999) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.9    6
(BV792602) pRRL2:Newb:20080411:165330 USMARC Pig Breed SNP D...    46   2.3    1
(DL109371) Diagnosis of existing illnesses or that praedispo...    46   2.3    1
(DL109370) Diagnosis of existing illnesses or that praedispo...    46   2.3    1
(DL032736) Diagnosis of existing illnesses or that praedispo...    46   2.3    1
(DL032735) Diagnosis of existing illnesses or that praedispo...    46   2.3    1
(GM645200) Sequence 23722 from Patent EP1942197.                   46   2.3    1
(GM645199) Sequence 23721 from Patent EP1942197.                   46   2.3    1
(AP001029) Homo sapiens genomic DNA, chromosome 18 clone:RP1...    46   2.3    1
(AP001028) Homo sapiens genomic DNA, chromosome 18 clone:RP1...    46   2.3    1
(AC095047) Homo sapiens BAC clone RP11-219G14 from 4, comple...    46   2.3    1
(CU928582) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.3    1
(CU313322) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.3    1
(CU302364) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.3    1
(AP001113) Homo sapiens genomic DNA, chromosome 18p11.2 clon...    46   2.3    1
(AC196627) Dasypus novemcinctus clone VMRC5-135N5, WORKING D...    46   2.3    1
(AC173699) Bos taurus clone CH240-301B9, WORKING DRAFT SEQUE...    46   2.3    1
(AC172217) Bos taurus clone CH240-293A19, WORKING DRAFT SEQU...    46   2.3    1
(ER915252) AH_PBa0001B23.g1 AH_PBa Amaranthus hypochondriacu...    46   2.3    1
(ED619638) GM_WBa0014A09.r GM_WBa Glycine max genomic clone ...    46   2.3    1
(ED616359) GM_WBa0009C10.r GM_WBa Glycine max genomic clone ...    46   2.3    1
(DX115947) OG_ABa0140P12.f OG_ABa Oryza granulata genomic cl...    46   2.3    1
(DU665075) OG_ABa0074J09.r OG_ABa Oryza granulata genomic cl...    46   2.3    1
(DU146457) OG_ABa0028H07.f OG_ABa Oryza granulata genomic cl...    46   2.3    1
(CZ878171) OC__Ba0279I22.f OC__Ba Oryza coarctata genomic cl...    46   2.3    1
(CZ824514) OC__Ba0204B15.r OC__Ba Oryza coarctata genomic cl...    46   2.3    1
(CZ770471) OC__Ba0127J02.f OC__Ba Oryza coarctata genomic cl...    46   2.3    1
(CZ770305) OC__Ba0127F11.f OC__Ba Oryza coarctata genomic cl...    46   2.3    1
(CT355676) Sus scrofa genomic clone CH242-382K23, genomic su...    46   2.3    1
(EG700546) RCTAZ24TP Castor bean cDNA library from seeds (40...    46   2.3    1
(EG700058) RCTAU14TP Castor bean cDNA library from seeds (40...    46   2.3    1
(EG698455) RCTAB62TP Castor bean cDNA library from seeds (40...    46   2.3    1
(EG697181) RCSA488TP Castor bean cDNA library from seeds (12...    46   2.3    1
(EG694387) RCSBC56TP Castor bean cDNA library from seeds (12...    46   2.3    1
(EG693341) RCSB221TP Castor bean cDNA library from seeds (12...    46   2.3    1
(EG692736) RCSAV88TP Castor bean cDNA library from seeds (12...    46   2.3    1
(GO924400) CMSMEb0002P19f CMSMEb Castanea mollissima cDNA, m...    46   2.3    1
(GD959979) 454GmaGlobSeed702628 Soybean Seeds Containing Glo...    46   2.3    1
(GD849157) 454GmaGlobSeed591806 Soybean Seeds Containing Glo...    46   2.3    1
(GD761919) 454GmaGlobSeed504568 Soybean Seeds Containing Glo...    46   2.3    1
(GD732922) 454GmaGlobSeed475571 Soybean Seeds Containing Glo...    46   2.3    1
(FK655350) 454GmaGlobSeed389982 Soybean Seeds Containing Glo...    46   2.3    1
(AW616665) EST323076 L. hirsutum trichome, Cornell Universit...    46   2.3    1
(EV523815) JB2_33_G09 Castor seed endosperm Ricinus communis...    46   2.3    1
(EV523314) JB2_16_G11 Castor seed endosperm Ricinus communis...    46   2.3    1
(EV523127) JB2_59_H03 Castor seed endosperm Ricinus communis...    46   2.3    1
(EV522748) JB2_46_B06 Castor seed endosperm Ricinus communis...    46   2.3    1
(EV519768) JB2_64_F12 Castor seed endosperm Ricinus communis...    46   2.3    1
(CU424492) Medicago truncatula chromosome 5 clone mte1-5m21,...    36   2.4    4
(CZ527523) SRAA-aac49e02.g1 Strongyloides ratti whole genome...    36   2.5    3
(DX538978) GH_MBb0069D01r GH_MBb Gossypium hirsutum genomic ...    44   2.7    2
(AC176893) Strongylocentrotus purpuratus clone R3-31K15, WOR...    32   3.2    5
(AC195643) Pan troglodytes BAC clone CH251-328O14 from chrom...    34   4.0    5
(AX344571) Sequence 22 from Patent WO0200932.                      34   4.1    2
(AP002393) Homo sapiens genomic DNA, chromosome 18q12 clone:...    44   4.3    3
(AC196654) Gallus gallus chromosome UNKNOWN clone CH261-96G1...    32   4.3    2
(CU928856) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   4.4    2
(AC215271) MACACA MULATTA BAC clone CH250-77L24 from chromos...    34   4.4    2
(CE113329) tigr-gss-dog-17000324902755 Dog Library Canis lup...    42   5.0    2
(AC109352) Homo sapiens BAC clone RP11-489P20 from 4, comple...    38   5.0    4
(FP102034) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   5.2    4
(FP102988) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   5.4    7
(BX649599) Zebrafish DNA sequence from clone CH211-224B1 in ...    42   5.4    4
(GR142056) CCBX21665.g1 CCBX Mimulus guttatus IM62 floral bu...    36   5.5    2
(CO900867) Mdfrt3061d09.y1 Mdfrt Malus x domestica cDNA clon...    38   5.5    2
(GR138469) CCBX19459.b1 CCBX Mimulus guttatus IM62 floral bu...    36   5.5    2
(CW790591) SP__Ba0070F23.f SP__Ba Sorghum propinquum genomic...    36   5.5    3
(GR138470) CCBX19459.g1 CCBX Mimulus guttatus IM62 floral bu...    36   5.5    2
(GR069533) CCIF8441.g1 CCIF Mimulus guttatus IM62 leaves (H)...    36   5.6    2
(GR175880) CBPG4919.g1 CBPG Mimulus guttatus IM62 roots, see...    36   5.6    2
(EI688128) SB_BBd27-A23.F SB_BBd Sorghum bicolor genomic 5',...    34   5.7    2
(CT009638) Zebrafish DNA sequence from clone CH73-162A18 in ...    36   5.7    4
(AM615197) Entamoeba invadens IP1 GSS, clone inv059d06.q1k.        40   5.8    2
(GR096087) CCIF22903.g1 CCIF Mimulus guttatus IM62 leaves (H...    36   5.8    2
(GR043323) CCIC21178.g1 CCIC Mimulus guttatus IM62 roots (H)...    36   5.8    2
(CL328317) RPCI44_248E16.r RPCI-44 Sus scrofa genomic clone ...    32   5.9    2
(GR009530) CCIC3159.g1 CCIC Mimulus guttatus IM62 roots (H) ...    36   5.9    2
(AM648897) Entamoeba moshkovskii FIC GSS, clone mosh063c02.p1k.    34   6.0    2
(AC183501) Medicago truncatula chromosome 6 clone mth2-73p12...    44   6.0    5
(EE489287) Fag-B-IES1,5h-K1-73 Boerner cDNA subtraction libr...    34   6.0    2
(GR112223) CCBG5258.g1 CCBG Mimulus guttatus IM62 floral bud...    36   6.0    2
(CT432287) Sus scrofa genomic clone CH242-507J21, genomic su...    42   6.2    2
(AC111720) Rattus norvegicus clone CH230-62B24, *** SEQUENCI...    40   6.3    4
(AC231694) Choloepus hoffmanni clone CH281-155K19, WORKING D...    40   6.3    3
(EJ182518) 1092344131787 Global-Ocean-Sampling_GS-27-01-01-1...    42   6.4    2
(AC090246) Homo sapiens chromosome 18, clone RP11-699C17, co...    44   6.7    4
(AC155906) Mus musculus BAC clone RP23-460M14 from chromosom...    40   6.8    5
(EK039662) 1092959503654 Global-Ocean-Sampling_GS-31-01-01-1...    42   6.8    2
(EK013608) 1092955215115 Global-Ocean-Sampling_GS-31-01-01-1...    42   7.0    2
(AC124257) Homo sapiens chromosome 18 clone RP11-6D20 map 18...    38   7.1    4
(CO905149) Mdfrt3065c10.y1 Mdfrt Malus x domestica cDNA clon...    38   7.3    2
(BX927284) Zebrafish DNA sequence from clone CH211-28A12 in ...    40   7.6    6
(EL431139) CHCS5644.b1_G20.ab1 CHC(LMS) Texas blueweed Helia...    32   7.9    3
(EA102713) Sequence 96 from patent US 7195870.                     30   8.0    6
(AX323620) Sequence 108 from Patent WO0192565.                     30   8.0    6
(AX277933) Sequence 96 from Patent WO0177375.                      30   8.0    6
(GM995968) Sequence 108 from Patent EP2014776.                     30   8.0    6
(CR759796) Zebrafish DNA sequence from clone DKEY-18A10 in l...    44   8.9    1
(CR450735) Zebrafish DNA sequence from clone CH211-274B17 in...    44   8.9    1
(BX323802) Zebrafish DNA sequence from clone DKEY-104I9 in l...    44   8.9    1
(AL670720) Mouse DNA sequence from clone RP23-321M9 on chrom...    44   8.9    1
(AC161821) Pan troglodytes BAC clone CH251-507E3 from chromo...    44   8.9    1
(AC146255) Pan troglodytes BAC clone RP43-28B2 from chromoso...    44   8.9    1
(AC216839) Populus trichocarpa clone POP031-N06, complete se...    44   8.9    1
(CQ597041) Sequence 24799 from Patent WO0171042.                   44   8.9    1
(CQ592940) Sequence 20698 from Patent WO0171042.                   44   8.9    1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    44   8.9    1
(AC008356) Drosophila melanogaster clone BACR43K14, complete...    44   8.9    1
(AC008317) Drosophila melanogaster clone BACR08N17, complete...    44   8.9    1
(AL583859) Human DNA sequence from clone RP11-271F18 on chro...    44   8.9    1
(AC114813) Homo sapiens BAC clone RP11-1325I10 from 2, compl...    44   8.9    1
(AC105227) Homo sapiens chromosome 18, clone RP11-1030E3, co...    44   8.9    1
(AC093589) Homo sapiens BAC clone RP11-5K10 from 4, complete...    44   8.9    1
(AC006155) Homo sapiens BAC clone RP11-263N12 from 7, comple...    44   8.9    1
(AC162755) Loxodonta africana clone VMRC15-558E13, WORKING D...    44   8.9    1
(AC161311) Loxodonta africana clone VMRC15-254A2, WORKING DR...    44   8.9    1
(AC160746) Bos taurus clone CH240-92A15, WORKING DRAFT SEQUE...    44   8.9    1
(AC148928) Pan troglodytes chromosome 7 clone RP43-35J11, **...    44   8.9    1
(AC117279) Rattus norvegicus clone CH230-350C21, WORKING DRA...    44   8.9    1
(AC107339) Rattus norvegicus clone CH230-138F16, WORKING DRA...    44   8.9    1
(CU928219) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.9    1
(CU915720) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(CU463271) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(CU463217) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(CR940353) Theileria annulata genomic DNA chromosome 4.            44   8.9    1
(AC236506) Xenopus laevis clone CH219-9A16, *** SEQUENCING I...    44   8.9    1
(AC233523) Solanum tuberosum chromosome 1 clone RH167N12, **...    44   8.9    1
(AC220642) Bos taurus clone CH240-351I16, WORKING DRAFT SEQU...    44   8.9    1
(AC169013) Loxodonta africana clone VMRC15-14A24, WORKING DR...    44   8.9    1
(AC166132) Bos taurus clone CH240-175D20, WORKING DRAFT SEQU...    44   8.9    1
(AC164449) Bos taurus clone CH240-153O10, *** SEQUENCING IN ...    44   8.9    1
(AC016854) Homo sapiens clone RP11-11L11, LOW-PASS SEQUENCE ...    44   8.9    1
(AC015962) Homo sapiens chromosome 18 clone RP11-111D6 map 1...    44   8.9    1
(AC014256) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   8.9    1
(AC010825) Homo sapiens clone RP11-5L11, WORKING DRAFT SEQUE...    44   8.9    1
(EK343721) 1095467116174 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.9    1
(EI339733) GM_WBc0083B06.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI298828) GM_WBc0024D02.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(ED390521) AUAC-aag06f10.b1 Ascaris suum whole genome shotgu...    44   8.9    1
(ED134812) AUAC-aag06f10.g1 Ascaris suum whole genome shotgu...    44   8.9    1
(DX282631) OR_ABa0183A02.f OR_ABa Oryza ridleyi genomic clon...    44   8.9    1
(AL408657) T3 end of clone AV0AA009H10 of library AV0AA from...    44   8.9    1
(CZ813275) OC__Ba0188O05.r OC__Ba Oryza coarctata genomic cl...    44   8.9    1
(CZ800420) OC__Ba0171K16.f OC__Ba Oryza coarctata genomic cl...    44   8.9    1
(CL092203) ISB1-21K17_Sp6.1 ISB1 Xenopus (Silurana) tropical...    44   8.9    1
(AG279259) Mus musculus molossinus DNA, clone:MSMg01-050A18....    44   8.9    1
(EH180635) LB01753.CR_P04 GC_BGC-17 Bos taurus cDNA clone IM...    44   8.9    1
(EG551208) MM01O10_XP Sugar Beet germination cDNA library Be...    44   8.9    1
(EC268850) TT1CT35TV Tetrahymena thermophila SB210 cDNA libr...    44   8.9    1
(DY216990) 001031BMUA002299HT BMUA Bos taurus cDNA 5', mRNA ...    44   8.9    1
(DY176671) 001030BMUA002250HT BMUA Bos taurus cDNA 5', mRNA ...    44   8.9    1
(DY123112) 001030BMUA002274HT BMUA Bos taurus cDNA 5', mRNA ...    44   8.9    1
(DV117618) CV03018A1C05.f1 CV03-normalized library Euphorbia...    44   8.9    1
(DR434241) ACAE-aaa06g03.b2 Hydra EST UCI 5 Hydra magnipapil...    44   8.9    1
(DN138686) ACAE-aaa17p18.g1 Hydra EST UCI 5 Hydra magnipapil...    44   8.9    1
(DN138383) ACAE-aaa14g03.g1 Hydra EST UCI 5 Hydra magnipapil...    44   8.9    1
(CU519154) Theobroma cacao, mRNA sequence (KZ0ABH4YF20FM1).        44   8.9    1
(CK518557) rswea0_000711.y1 swe Bombyx mori cDNA, mRNA seque...    44   8.9    1
(AI253643) aq32e02.x1 Barstead prostate BPH HPLRB4 1 Homo sa...    44   8.9    1
(GH636101) EG-S31_003_A12 suspSSHS3, proliferation library (...    44   8.9    1
(GD237421) G1045P3113RC8.T1 Aplysia californica Pooled Norma...    44   8.9    1
(GD216701) G1045P370RN4.T1 Aplysia californica Pooled Normal...    44   8.9    1
(GD205417) G1045P347RB22.T1 Aplysia californica Pooled Norma...    44   8.9    1
(FF570931) TTEBB30TVB Tetrahymena thermophila conjugation cD...    44   8.9    1
(FF080997) G1045P337RJ9.T0 Aplysia californica Pooled Normal...    44   8.9    1
(EY443462) CBAY6349.rev CBAY Tubifex tubifex Embryos and juv...    44   8.9    1
(EY439662) CBAY3503.rev CBAY Tubifex tubifex Embryos and juv...    44   8.9    1
(EV838263) TT1E508TV Tetrahymena thermophila SB210 cDNA libr...    44   8.9    1
(CP000096) Pelodictyon luteolum DSM 273, complete genome.          44   8.9    1
(AM449976) Vitis vinifera contig VV78X039446.7, whole genome...    36   9.4    3

>(C90589) Dictyostelium discoideum slug cDNA, clone SSI816.
          Length = 606

 Score =  811 bits (409), Expect(3) = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Plus


Query: 240 atatatacagcaaaagcacaaatgaattcagtatcaatgcaattacaaagtaatttagca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atatatacagcaaaagcacaaatgaattcagtatcaatgcaattacaaagtaatttagca 225


Query: 300 atgacaaaagttcaaggaaatttagcaaaatcaacagagattatgaaaatgatgaatgat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 atgacaaaagttcaaggaaatttagcaaaatcaacagagattatgaaaatgatgaatgat 285


Query: 360 ctcattaaattacccgaactaaataaagttatgatggcaatgggttcagagatgacaaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctcattaaattacccgaactaaataaagttatgatggcaatgggttcagagatgacaaaa 345


Query: 420 gcaggtataatggaagagatgatttctgatgtattcgatatgcaaggtgaagatcttgaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gcaggtataatggaagagatgatttctgatgtattcgatatgcaaggtgaagatcttgaa 405


Query: 480 gaggaagcagaaatggaagttaataaaattatggatgagattttagtatctggtccacaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaggaagcagaaatggaagttaataaaattatggatgagattttagtatctggtccacaa 465


Query: 540 gttagttcagcaccattagaaactcatcaacaagaagaagttgttcaagaaaaacaagaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gttagttcagcaccattagaaactcatcaacaagaagaagttgttcaagaaaaacaagaa 525


Query: 600 gatagtgaattacttgatcgtttgaaagctttaaaatcttaaaattttg 648
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gatagtgaattacttgatcgtttgaaagctttaaaatcttaaaattttg 574

 Score =  109 bits (55), Expect(3) = 0.0
 Identities = 55/55 (100%)
 Strand = Plus / Plus


Query: 74  gaattaagaagagaagatagaggtttagatactcaattaagagcaattgatatgc 128
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaattaagaagagaagatagaggtttagatactcaattaagagcaattgatatgc 55

 Score = 95.6 bits (48), Expect(3) = 0.0
 Identities = 48/48 (100%)
 Strand = Plus / Plus


Query: 132 gaaaagaaaacagttagaatgattaaagaaagagtttaagcaggagat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  gaaaagaaaacagttagaatgattaaagaaagagtttaagcaggagat 105

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,054,200,300
Number of extensions: 71837274
Number of successful extensions: 6654328
Number of sequences better than 10.0: 225
Length of query: 853
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 829
Effective length of database: 102,084,959,077
Effective search space: 84628431074833
Effective search space used: 84628431074833
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U05385-1 (Contig-U05385-1Q) /CSM_Contig/Contig-U05385-1Q.Seq.d
         (853 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT081016_1(BT081016|pid:none) Caligus clemensi clone ccle-evs-50...   132   2e-33
AC113930_11(AC113930|pid:none) Oryza sativa (japonica cultivar-g...   126   3e-33
AP008209_58(AP008209|pid:none) Oryza sativa (japonica cultivar-g...   126   3e-33
(Q9FFB3) RecName: Full=Vacuolar protein sorting-associated prote...   117   2e-29
AF083749_1(AF083749|pid:none) Arabidopsis thaliana clone sps517 ...   117   2e-29
(Q6NRM7) RecName: Full=Charged multivesicular body protein 3; Al...   122   2e-29
CT005272_355(CT005272|pid:none) Leishmania major strain Friedlin...   119   2e-29
(Q5BKM3) RecName: Full=Charged multivesicular body protein 3; Al...   122   4e-29
(Q9Y3E7) RecName: Full=Charged multivesicular body protein 3; Al...   120   7e-29
AF219226_1(AF219226|pid:none) Homo sapiens neuroendocrine differ...   120   7e-29
(Q9CQ10) RecName: Full=Charged multivesicular body protein 3; Al...   119   1e-28
(Q8CGS4) RecName: Full=Charged multivesicular body protein 3; Al...   119   1e-28
AK009414_1(AK009414|pid:none) Mus musculus adult male tongue cDN...   119   2e-28
(Q58CS7) RecName: Full=Charged multivesicular body protein 3; Al...   118   3e-28
BT021870_1(BT021870|pid:none) Bos taurus vacuolar protein sortin...   118   3e-28
BT061369_1(BT061369|pid:none) Zea mays full-length cDNA clone ZM...   112   6e-28
BT045728_1(BT045728|pid:none) Salmo salar clone ssal-rgf-529-351...   116   2e-27
DQ910328_1(DQ910328|pid:none) Anopheles funestus clone AF-169 va...   113   8e-27
AK294389_1(AK294389|pid:none) Homo sapiens cDNA FLJ58988 complet...   120   2e-26
BT075352_1(BT075352|pid:none) Osmerus mordax clone omor-rgc-504-...   114   2e-26
BT047887_1(BT047887|pid:none) Salmo salar clone ssal-rgb2-630-21...   113   4e-26
(Q6NY88) RecName: Full=Charged multivesicular body protein 3; Al...   110   1e-25
EU953715_1(EU953715|pid:none) Zea mays clone 1444697 hypothetica...   115   1e-24
CR382128_719(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...   112   2e-23
U58762_6(U58762|pid:none) Caenorhabditis elegans cosmid T27F7, c...   109   1e-22
AM270325_28(AM270325|pid:none) Aspergillus niger contig An14c018...   105   2e-21
FN392319_331(FN392319|pid:none) Pichia pastoris GS115 chromosome...   103   6e-21
AB251865_1(AB251865|pid:none) Aspergillus oryzae Aovps24 gene fo...   103   7e-21
CU928168_317(CU928168|pid:none) Kluyveromyces thermotolerans str...   100   5e-20
AM920436_315(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    99   1e-19
FN357362_30(FN357362|pid:none) Schistosoma mansoni genome sequen...    96   2e-18
CU638743_724(CU638743|pid:none) Podospora anserina genomic DNA c...    95   3e-18
CP000496_7(CP000496|pid:none) Pichia stipitis CBS 6054 chromosom...    94   4e-18
CR382136_807(CR382136|pid:none) Debaryomyces hansenii strain CBS...    92   3e-17
CR382126_1082(CR382126|pid:none) Kluyveromyces lactis strain NRR...    91   4e-17
(P36095) RecName: Full=Vacuolar protein-sorting-associated prote...    91   5e-17
CR380958_67(CR380958|pid:none) Candida glabrata strain CBS138 ch...    91   6e-17
CP000600_304(CP000600|pid:none) Ostreococcus lucimarinus CCE9901...    91   6e-17
BT046106_1(BT046106|pid:none) Salmo salar clone ssal-rgf-541-297...    82   9e-17
AX886086_1(AX886086|pid:none) Sequence 1949 from Patent EP1033401.     75   1e-15
FN317503_1(FN317503|pid:none) Schistosoma japonicum isolate Anhu...    85   3e-15
AY815826_1(AY815826|pid:none) Schistosoma japonicum SJCHGC01901 ...    83   1e-14
BT068650_1(BT068650|pid:none) Zea mays full-length cDNA clone ZM...    66   2e-13
D84478(D84478)hypothetical protein At2g06530 [imported] - Arabid...    78   4e-13
(Q701F9) RecName: Full=Vacuolar protein sorting-associated prote...    78   4e-13
AY088685_1(AY088685|pid:none) Arabidopsis thaliana clone 91878 m...    78   4e-13
AJ628449_1(AJ628449|pid:none) Arabidopsis thaliana partial At2g0...    78   4e-13
AJ628535_1(AJ628535|pid:none) Arabidopsis thaliana partial At2g0...    78   4e-13
AC068288_2(AC068288|pid:none) Homo sapiens BAC clone RP11-592A2 ...    77   6e-13
AJ628544_1(AJ628544|pid:none) Arabidopsis thaliana partial At2g0...    77   6e-13
AC078829_12(AC078829|pid:none) Oryza sativa chromosome 10 BAC OS...    63   9e-13
(Q941D5) RecName: Full=Vacuolar protein sorting-associated prote...    65   9e-13
BT069593_1(BT069593|pid:none) Zea mays full-length cDNA clone ZM...    69   1e-12
AM494964_158(AM494964|pid:none) Leishmania braziliensis chromoso...    72   1e-12
EF148488_1(EF148488|pid:none) Populus trichocarpa x Populus delt...    62   1e-12
EU967771_1(EU967771|pid:none) Zea mays clone 305958 unknown mRNA.      76   2e-12
CR954212_192(CR954212|pid:none) Ostreococcus tauri strain OTTH05...    76   2e-12
(Q5ZHN1) RecName: Full=Charged multivesicular body protein 2a; A...    75   2e-12
BT036402_1(BT036402|pid:none) Zea mays full-length cDNA clone ZM...    75   2e-12
BC152230_1(BC152230|pid:none) Danio rerio putative breast adenoc...    75   3e-12
(Q7ZW25) RecName: Full=Charged multivesicular body protein 2a; A...    75   3e-12
BT065136_1(BT065136|pid:none) Zea mays full-length cDNA clone ZM...    75   4e-12
(Q6DFS6) RecName: Full=Charged multivesicular body protein 2a; A...    75   4e-12
AM425689_1(AM425689|pid:none) Vitis vinifera contig VV78X267041....    74   5e-12
AC147427_17(AC147427|pid:none) Oryza sativa chromosome 3  B1394A...    67   7e-12
(Q5F3A2) RecName: Full=Charged multivesicular body protein 2b; A...    68   7e-12
BT073784_1(BT073784|pid:none) Oncorhynchus mykiss clone omyk-evo...    74   8e-12
AE014297_4075(AE014297|pid:none) Drosophila melanogaster chromos...    73   1e-11
EU965213_1(EU965213|pid:none) Zea mays clone 284556 charged mult...    73   1e-11
(P36108) RecName: Full=DOA4-independent degradation protein 4; A...    73   1e-11
AM502245_234(AM502245|pid:none) Leishmania infantum chromosome 27.     72   2e-11
BT057370_1(BT057370|pid:none) Salmo salar clone ssal-evd-571-229...    72   2e-11
BT081330_1(BT081330|pid:none) Caligus clemensi clone ccle-evs-50...    72   2e-11
AC003027_12(AC003027|pid:none) Arabidopsis thaliana chromosome I...    64   2e-11
(Q54GK9) RecName: Full=Charged multivesicular body protein 2a ho...    65   2e-11
BC102258_1(BC102258|pid:none) Bos taurus chromatin modifying pro...    72   2e-11
EF083439_1(EF083439|pid:none) Picea sitchensis clone WS02718_D03...    66   3e-11
AY890758_1(AY890758|pid:none) Synthetic construct Homo sapiens c...    72   3e-11
BT081097_1(BT081097|pid:none) Caligus clemensi clone ccle-evs-51...    72   3e-11
(Q9DB34) RecName: Full=Charged multivesicular body protein 2a; A...    72   3e-11
(Q0WTY4) RecName: Full=Vacuolar protein sorting-associated prote...    64   3e-11
BT005848_1(BT005848|pid:none) Arabidopsis thaliana At5g44560 gen...    64   3e-11
(Q6NXD2) RecName: Full=Charged multivesicular body protein 2b; A...    71   5e-11
BT075992_1(BT075992|pid:none) Caligus rogercresseyi clone crog-e...    71   5e-11
CR382122_552(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    70   1e-10
AL080122_1(AL080122|pid:none) Homo sapiens mRNA; cDNA DKFZp564O1...    69   2e-10
AL110485_11(AL110485|pid:none) Caenorhabditis elegans YAC Y46G5A...    69   3e-10
(Q6NVL7) RecName: Full=Charged multivesicular body protein 2b; A...    69   3e-10
BT076646_1(BT076646|pid:none) Caligus rogercresseyi clone crog-e...    68   3e-10
(Q7SYR0) RecName: Full=Charged multivesicular body protein 2b-A;...    68   3e-10
(Q8BJF9) RecName: Full=Charged multivesicular body protein 2b; A...    68   4e-10
BC042626_1(BC042626|pid:none) Mus musculus chromatin modifying p...    68   4e-10
AK339864_1(AK339864|pid:none) Acyrthosiphon pisum ACYPI008820 mR...    68   4e-10
BT078268_1(BT078268|pid:none) Lepeophtheirus salmonis Pacific fo...    67   6e-10
BT078425_1(BT078425|pid:none) Lepeophtheirus salmonis Pacific fo...    67   8e-10
AB024024_1(AB024024|pid:none) Arabidopsis thaliana genomic DNA, ...    63   1e-09
CU928168_263(CU928168|pid:none) Kluyveromyces thermotolerans str...    66   2e-09
CP000501_291(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    65   2e-09
EU637017_24(EU637017|pid:none) Adineta vaga glycoprotein gene, p...    65   2e-09
AM270324_26(AM270324|pid:none) Aspergillus niger contig An14c017...    65   4e-09
BT040698_1(BT040698|pid:none) Zea mays full-length cDNA clone ZM...    64   8e-09
Z98530_14(Z98530|pid:none) S.pombe chromosome I cosmid c4F8.           63   1e-08
BT077464_1(BT077464|pid:none) Lepeophtheirus salmonis Pacific fo...    63   1e-08
(O14177) RecName: Full=Uncharacterized protein C4F8.01;  &AL3550...    63   1e-08
CR382137_536(CR382137|pid:none) Debaryomyces hansenii strain CBS...    62   2e-08
BT075857_1(BT075857|pid:none) Caligus rogercresseyi clone crog-e...    62   2e-08
FN392321_1191(FN392321|pid:none) Pichia pastoris GS115 chromosom...    61   4e-08
BT075788_1(BT075788|pid:none) Caligus rogercresseyi clone crog-e...    60   7e-08
CR940348_293(CR940348|pid:none) Theileria annulata strain Ankara...    60   9e-08
EU009656_1(EU009656|pid:none) Taenia solium Ts1 (Ts1) mRNA, comp...    59   2e-07
FN320300_1(FN320300|pid:none) Schistosoma japonicum isolate Anhu...    59   2e-07
FN315164_1(FN315164|pid:none) Schistosoma japonicum isolate Anhu...    58   3e-07
AY814107_1(AY814107|pid:none) Schistosoma japonicum SJCHGC01479 ...    57   6e-07
FN315163_1(FN315163|pid:none) Schistosoma japonicum isolate Anhu...    57   6e-07
FN357320_15(FN357320|pid:none) Schistosoma mansoni genome sequen...    55   3e-06
FN320302_1(FN320302|pid:none) Schistosoma japonicum isolate Anhu...    55   4e-06
AM428663_1(AM428663|pid:none) Vitis vinifera contig VV78X020635....    52   2e-05
T38831(T38831)hypothetical protein SPAC4F8.01 - fission yeast  (...    51   6e-05
AM910987_164(AM910987|pid:none) Plasmodium knowlesi strain H chr...    49   2e-04
CR380957_117(CR380957|pid:none) Candida glabrata strain CBS138 c...    49   2e-04
CP001078_1830(CP001078|pid:none) Clostridium botulinum E3 str. A...    34   0.15
CP001140_135(CP001140|pid:none) Desulfurococcus kamchatkensis 12...    37   0.64
CP001357_384(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    36   1.9
FM992691_455(FM992691|pid:none) Candida dubliniensis CD36 chromo...    36   1.9
AP004299_9(AP004299|pid:none) Oryza sativa Japonica Group genomi...    36   1.9
AL732421_1(AL732421|pid:none) Zebrafish DNA sequence from clone ...    35   2.4
AJ488495_1(AJ488495|pid:none) Oryza sativa mRNA for SMC4 protein.      35   2.4
BA000023_1314(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,...    35   4.1
(A6TJ97) RecName: Full=UPF0182 protein Amet_0022;  &CP000724_22(...    35   4.1
(A8YUB8) RecName: Full=2',3'-cyclic-nucleotide 2'-phosphodiester...    35   4.1
CP000716_1451(CP000716|pid:none) Thermosipho melanesiensis BI429...    34   5.4
CP001291_3793(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    34   7.1
CP000360_1993(CP000360|pid:none) Acidobacteria bacterium Ellin34...    34   7.1
CR391905_3(CR391905|pid:none) Zebrafish DNA sequence from clone ...    34   7.1
CP000312_545(CP000312|pid:none) Clostridium perfringens SM101, c...    33   9.2
Z81029_5(Z81029|pid:none) Caenorhabditis elegans Cosmid C01A2, c...    33   9.3
T18795(T18795)hypothetical protein C01A2.4 - Caenorhabditis eleg...    33   9.3

>BT081016_1(BT081016|pid:none) Caligus clemensi clone
           ccle-evs-509-269 Charged multivesicular body protein 3
           putative mRNA, complete cds.
          Length = 220

 Score =  132 bits (332), Expect(2) = 2e-33
 Identities = 74/184 (40%), Positives = 108/184 (58%), Gaps = 10/184 (5%)
 Frame = +3

Query: 117 QLICQEKKTVRMIKERV*AGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQLQSNL 296
           Q+  +E K  R IKE    GD+ S + LAKE+V SRKA  +IYTAKA +NSV MQ+++
Sbjct: 36  QIQREEMKVTRSIKESAKRGDKDSCRILAKEVVQSRKAVSKIYTAKANLNSVEMQMKNQA 95

Query: 297 AMTKVQGNLAKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFDMQGEDL 476
           A  ++ G L+KSTE+M  M  L+KLPE+   M  +  EM KAGI EEM+ DV D + E+L
Sbjct: 96  AQVRLAGTLSKSTEVMVCMQKLVKLPEIASTMQELSKEMMKAGIFEEMMEDVMDNEPEEL 155

Query: 477 EEEAEMEVNKIMDEI-------LVSGPQVSSAPLETHXXXXXXXXXXXD---SELLDRLK 626
           E++ + EV+K+M E+       +   P V  A ++             +    ++ +RL+
Sbjct: 156 EDDVQNEVDKVMAELTEGDRKTIEKAPSVPKASIDVPEREDSEEEEEEEEGIKDMKERLE 215

Query: 627 ALKS 638
           ALKS
Sbjct: 216 ALKS 219

 Score = 34.3 bits (77), Expect(2) = 2e-33
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 17  MFSFLKKPTPEELVKKWKRELRREDRGLDTQLRAI 121
           +F   K P+P++ V +W ++LR+E   LD Q+R I
Sbjct: 3   LFGRSKSPSPKDRVNEWCKKLRKEGYNLDRQIRQI 37

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 692,855,040
Number of extensions: 8488605
Number of successful extensions: 32850
Number of sequences better than 10.0: 137
Number of HSP's gapped: 32741
Number of HSP's successfully gapped: 176
Length of query: 284
Length of database: 1,061,185,681
Length adjustment: 127
Effective length of query: 157
Effective length of database: 646,092,785
Effective search space: 101436567245
Effective search space used: 101436567245
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.65  gvh: 0.39  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U05385-1 is nuc