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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05383-1
Contig ID Contig-U05383-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05383-1 (Contig-U05383-1Q) /CSM_Contig/Contig-U05383-1Q.Seq.d
TGGAAAGAATTCTTTCCATTTCTTTAACACCTGCAATGGAAAGAATTCTT
TCACTTGAGCAAGAAGCTCAATTAATTCAATGGATTGAAGAAGAGATTGA
TCTAAACCAAACAGTCACAAAAGATCGTATTAAAAAACGTGTTTGCACTA
TGTTCACTGAAAGAGTTGGCAAACCACGTGATTCTGTTAGTGATGACTGG
TGGCTCAATTTTCGTAATCGACATCCAGAGATTAAATTAAAGTTAGTGAA
ATTCCAAGACCTTAAACGTCCAGATGCCGCTAAAACTCTCGATAAAGCTG
GTTTTTGGGAGCGTGCATGGGAAATTATAGAAAGAAATCGTATTAAACCA
CAAAATGTGGTTAATATCGATGAAAAGGGTATATTATTTACAAAATCAAA
TTTCAAGGTAATATTTACATATAAATATTAAAATTAATTGCAACACCACC
CGAATTGAGGGAACGACTAATAGCACTTCTTGAAATACCAAAGAGATTTG
CAATTTCTTGTTGAGTGGAACTATTGTCTTTCTGTGTATACATTTTCACA
GCGGCTGTCAGATTTACTCCTGAAAGAATTGAACAAATGTCAAATTCTAT
TTAAAAATAAAATGTTTTTTTTTATTTATTATTTGCACAGTTGTAATATT
ATAAATATATTAAAATGAAAAAAAAATAAAAAATTTGCCATTTTAAAAAA
AAAAAAAAAAAAA
Gap no gap
Contig length 713
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5661489
End point 5662184
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05383
List of clone(s) 

est1=SSH728E,1,714
Translated Amino Acid sequence 
ERILSISLTPAMERILSLEQEAQLIQWIEEEIDLNQTVTKDRIKKRVCTMFTERVGKPRD
SVSDDWWLNFRNRHPEIKLKLVKFQDLKRPDAAKTLDKAGFWERAWEIIERNRIKPQNVV
NIDEKGILFTKSNFKVIFTYKY*n*lqhhpn*gnd**hflkyqrdlqflvewnyclsvyt
fsqrlsdlllkelnkcqilfknkmfffiyylhscniinilk*kknkkfailkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
wkeffpfl*hlqwkeffhlskkln*fnglkkrli*tkqsqkivlknvfalcslkelanhv
illvmtggsifvidiqrln*s**nsktlnvqmplklsiklvfgsvhgkl*keivlnhkmw
lismkrvyylqnqisr*ylhinikincnttriegttnsts*ntkeicnfllsgtivflci
hfhsgcqiys*kn*tnvkfylkikcfflfiictvvil*iy*nekkiknlpf*kkkkk


Frame B:
gknsfhffntcngknsft*arssinsmd*rrd*skpnshkrsy*ktclhyvh*kswqtt*
fc***lvaqfs*stsrd*ikvseiprp*tsrcr*nsr*swflgacmgnyrkksy*ttkcg
*yr*kgyiiykikfqgniyi*ilkliatppelrerlialleipkrfaisc*vellsfcvy
iftaavrftperieqmsnsi*k*nvffyllfaql*yykyikmkkk*kichfkkkkkk


Frame C:
ERILSISLTPAMERILSLEQEAQLIQWIEEEIDLNQTVTKDRIKKRVCTMFTERVGKPRD
SVSDDWWLNFRNRHPEIKLKLVKFQDLKRPDAAKTLDKAGFWERAWEIIERNRIKPQNVV
NIDEKGILFTKSNFKVIFTYKY*n*lqhhpn*gnd**hflkyqrdlqflvewnyclsvyt
fsqrlsdlllkelnkcqilfknkmfffiyylhscniinilk*kknkkfailkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05383-1 (Contig-U05383-1Q)
/CSM_Contig/Contig-U05383-1Q.Seq.d
         (713 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05383-1 (Contig-U05383-1Q) /CSM_Contig/Conti...  1257  0.0
Contig-U03036-1 (Contig-U03036-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11236-1 (Contig-U11236-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U10274-1 (Contig-U10274-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U09443-1 (Contig-U09443-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U06174-1 (Contig-U06174-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U12983-1 (Contig-U12983-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11812-1 (Contig-U11812-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11131-1 (Contig-U11131-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U10127-1 (Contig-U10127-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U05383-1 (Contig-U05383-1Q) /CSM_Contig/Contig-U05383-1Q.Seq.d
          Length = 713

 Score = 1257 bits (634), Expect = 0.0
 Identities = 652/661 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaagaattctttccatttctttaacacctgcaatggaaagaattctttcacttgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tggaaagaattctttccatttctttaacacctgcaatggaaagaattctttcacttgagc 60

                                                                       
Query: 61  aagaagctcaattaattcaatggattgaagaagagattgatctaaaccaaacagtcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagaagctcaattaattcaatggattgaagaagagattgatctaaaccaaacagtcacaa 120

                                                                       
Query: 121 aagatcgtattaaaaaacgtgtttgcactatgttcactgaaagagttggcaaaccacgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagatcgtattaaaaaacgtgtttgcactatgttcactgaaagagttggcaaaccacgtg 180

                                                                       
Query: 181 attctgttagtgatgactggtggctcaattttcgtaatcgacatccagagattaaattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attctgttagtgatgactggtggctcaattttcgtaatcgacatccagagattaaattaa 240

                                                                       
Query: 241 agttagtgaaattccaagaccttaaacgtccagatgccgctaaaactctcgataaagctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agttagtgaaattccaagaccttaaacgtccagatgccgctaaaactctcgataaagctg 300

                                                                       
Query: 301 gtttttgggagcgtgcatgggaaattatagaaagaaatcgtattaaaccacaaaatgtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtttttgggagcgtgcatgggaaattatagaaagaaatcgtattaaaccacaaaatgtgg 360

                                                                       
Query: 361 ttaatatcgatgaaaagggtatattatttacaaaatcaaatttcaaggtaatatttacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaatatcgatgaaaagggtatattatttacaaaatcaaatttcaaggtaatatttacat 420

                                                                       
Query: 421 ataaatattaaaattaattgcaacaccacccgaattgagggaacgactaatagcacttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataaatattaaaattaattgcaacaccacccgaattgagggaacgactaatagcacttct 480

                                                                       
Query: 481 tgaaataccaaagagatttgcaatttcttgttgagtggaactattgtctttctgtgtata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgaaataccaaagagatttgcaatttcttgttgagtggaactattgtctttctgtgtata 540

                                                                       
Query: 541 cattttcacagcggctgtcagatttactcctgaaagaattgaacaaatgtcaaattctat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cattttcacagcggctgtcagatttactcctgaaagaattgaacaaatgtcaaattctat 600

                                                                       
Query: 601 ttaaaaataaaatgnnnnnnnnnatttattatttgcacagttgtaatattataaatatat 660
           ||||||||||||||         |||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttaaaaataaaatgtttttttttatttattatttgcacagttgtaatattataaatatat 660

            
Query: 661 t 661
           |
Sbjct: 661 t 661


 Score = 36.2 bits (18), Expect = 0.050
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 1  tggaaagaattctttcca 18
          ||||||||||||||||||
Sbjct: 18 tggaaagaattctttcca 1


 Score = 36.2 bits (18), Expect = 0.050
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 35 aatggaaagaattctttc 52
          ||||||||||||||||||
Sbjct: 20 aatggaaagaattctttc 3


 Score = 36.2 bits (18), Expect = 0.050
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 3  gaaagaattctttccatt 20
          ||||||||||||||||||
Sbjct: 52 gaaagaattctttccatt 35


>Contig-U03036-1 (Contig-U03036-1Q) /CSM_Contig/Contig-U03036-1Q.Seq.d
          Length = 1042

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 593 aattctatttaaaaataaaatg 614
           ||||||||||||||||||||||
Sbjct: 618 aattctatttaaaaataaaatg 597


>Contig-U11236-1 (Contig-U11236-1Q) /CSM_Contig/Contig-U11236-1Q.Seq.d
          Length = 1828

 Score = 36.2 bits (18), Expect = 0.050
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 422 taaatattaaaattaatt 439
           ||||||||||||||||||
Sbjct: 198 taaatattaaaattaatt 215


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,578
Number of Sequences: 6905
Number of extensions: 12578
Number of successful extensions: 1346
Number of sequences better than 10.0: 147
length of query: 713
length of database: 5,674,871
effective HSP length: 16
effective length of query: 697
effective length of database: 5,564,391
effective search space: 3878380527
effective search space used: 3878380527
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.19
Homology vs DNA 
Query= Contig-U05383-1 (Contig-U05383-1Q) /CSM_Contig/Contig-U05383-1Q.Seq.d
         (713 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038445) Dictyostelium discoideum slug cDNA, clone SSH728.      349   e-108  2
(AU073643) Dictyostelium discoideum slug cDNA, clone SSH728.      204   3e-48  1
(C22915) Dictyostelium discoideum gamete cDNA, clone FC-AG04.      72   3e-08  1
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    50   0.12   1
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    50   0.12   1
(CP000013) Borrelia garinii PBi, complete genome.                  36   0.19   10
(AM487592) Vitis vinifera contig VV78X039164.3, whole genome...    40   0.21   2
(AC179872) Strongylocentrotus purpuratus clone R3-1007A14, W...    36   0.28   2
(EJ456705) 1093017544912 Global-Ocean-Sampling_GS-28-01-01-1...    38   0.35   2
(EJ518783) 1092955119759 Global-Ocean-Sampling_GS-29-01-01-1...    38   0.35   2
(DN565678) 90962195 Sea Urchin primary mesenchyme cell cDNA ...    34   0.39   4
(CU929827) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.48   1
(AC178943) Strongylocentrotus purpuratus clone R3-3121D4, WO...    48   0.48   1
(AC178763) Strongylocentrotus purpuratus clone R3-19F07, WOR...    48   0.48   1
(AP010011) Lotus japonicus genomic DNA, clone: LjT30N04, TM0...    40   0.53   3
(CU467895) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.63   7
(AL929364) Plasmodium falciparum chromosome 8, unmapped contig.    42   0.64   3
(AC119414) Medicago truncatula clone mth2-23d7, complete seq...    44   0.67   5
(AE014298) Drosophila melanogaster chromosome X, complete se...    32   0.72   2
(AM180355) Clostridium difficile 630 complete genome.              34   0.82   2
(AM460733) Vitis vinifera contig VV78X209937.3, whole genome...    44   0.86   3
(AC118532) Rattus norvegicus clone CH230-319J22, *** SEQUENC...    34   0.96   2
(AC118435) Rattus norvegicus clone CH230-400J1, *** SEQUENCI...    34   0.99   2
(AC010921) Drosophila melanogaster clone BACR15L12, complete...    32   1.0    2
(AC010922) Drosophila melanogaster clone BACR09H01, complete...    32   1.0    2
(AC017472) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   1.0    2
(DQ333888) Hirudo medicinalis putative elongation factor 1 a...    36   1.2    2
(BI640222) SD23033.5prime SD Drosophila melanogaster Schneid...    32   1.3    2
(ER825478) PPTC819TF Solanum tuberosum RHPOTKEY BAC ends Sol...    32   1.5    3
(ER374733) 1093030526929 Global-Ocean-Sampling_GS-34-01-01-1...    32   1.5    3
(AC222168) Bos taurus clone CH240-411D11, WORKING DRAFT SEQU...    36   1.6    6
(AC011064) Drosophila melanogaster strain y chromosome X clo...    40   1.6    6
(DQ774621) Synthetic construct Vibrio cholerae clone FLH2006...    46   1.9    1
(CZ719684) OC__Ba0044J22.r OC__Ba Oryza coarctata genomic cl...    46   1.9    1
(CV844676) ID0AEE10AE08RM3 ID0AEE Acyrthosiphon pisum cDNA c...    46   1.9    1
(CN757854) ID0AAA20CE10RM1 ApMS Acyrthosiphon pisum cDNA clo...    46   1.9    1
(CN585740) USDA-FP_128811 Acyrthosiphon pisum, Pea Aphid Acy...    46   1.9    1
(GE462958) 294754781 Nasonia vitripennis Adult Female Nasoni...    46   1.9    1
(GE461698) 294749266 Nasonia vitripennis Adult Female Nasoni...    46   1.9    1
(GE444701) 294573675 Nasonia vitripennis Adult Female Nasoni...    46   1.9    1
(GE438094) 294579566 Nasonia vitripennis Adult Male Nasonia ...    46   1.9    1
(GE431206) 294524559 Nasonia vitripennis Adult Male Nasonia ...    46   1.9    1
(GE424966) 294514575 Nasonia vitripennis Adult Male Nasonia ...    46   1.9    1
(GE423750) 294512902 Nasonia vitripennis Adult Male Nasonia ...    46   1.9    1
(GE414255) 294493544 Nasonia vitripennis Adult Male Nasonia ...    46   1.9    1
(FF338614) 280471900 Pea aphid whole body normalized full le...    46   1.9    1
(FF337485) 280466233 Pea aphid whole body normalized full le...    46   1.9    1
(FF326182) 280428067 Pea aphid whole body normalized full le...    46   1.9    1
(FF320632) 280408196 Pea aphid whole body normalized full le...    46   1.9    1
(EX650295) 256733992 Pea aphid whole body normalized full le...    46   1.9    1
(EX650011) 256738989 Pea aphid whole body normalized full le...    46   1.9    1
(EX630524) 255474684 Pea aphid whole body normalized full le...    46   1.9    1
(EX601719) 255316169 Pea aphid whole body normalized full le...    46   1.9    1
(EX601652) 255307686 Pea aphid whole body normalized full le...    46   1.9    1
(EU272902) Vibrio cholerae strain Amazonia isolate 3509 path...    46   1.9    1
(CP001485) Vibrio cholerae MJ-1236 chromosome 1, complete se...    46   1.9    1
(CP001235) Vibrio cholerae O395 chromosome I, complete seque...    46   1.9    1
(CP001233) Vibrio cholerae M66-2 chromosome I, complete sequ...    46   1.9    1
(CP000627) Vibrio cholerae O395 chromosome 2, complete genome.     46   1.9    1
(CP000142) Pelobacter carbinolicus DSM 2380, complete genome.      46   1.9    1
(AE003852) Vibrio cholerae O1 biovar eltor str. N16961 chrom...    46   1.9    1
(AC126702) Rattus norvegicus clone CH230-5N7, *** SEQUENCING...    42   2.0    4
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 36   2.0    11
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   2.5    6
(AC167529) Rhinolophus ferrumequinum clone VMRC7-48O13, WORK...    40   2.6    6
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete...    36   3.0    9
(AL807754) Zebrafish DNA sequence from clone CH211-197B11 in...    40   3.1    3
(BX004830) Zebrafish DNA sequence from clone CH211-159I8 in ...    42   3.3    3
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   3.4    2
(AC093753) Homo sapiens BAC clone RP11-50C12 from 4, complet...    34   3.7    2
(BX649618) Mouse DNA sequence from clone RP23-159M13 on chro...    34   3.8    4
(AC188073) Macaca mulatta chromosome UNK clone CH250-24H12, ...    36   4.0    7
(AM478772) Vitis vinifera contig VV78X021331.3, whole genome...    34   4.2    2
(AC180888) Strongylocentrotus purpuratus clone R3-3066H18, W...    36   4.6    4
(AC107470) Rattus norvegicus clone CH230-140P12, *** SEQUENC...    34   4.6    5
(EW967633) LS_13_D06_T7 Headlice composite library with all ...    42   4.7    2
(AM461438) Vitis vinifera contig VV78X194422.2, whole genome...    34   4.8    2
(AC105547) Rattus norvegicus clone CH230-201N9, WORKING DRAF...    40   4.9    3
(EK058107) 1092960047387 Global-Ocean-Sampling_GS-31-01-01-1...    32   5.0    3
(EF669477) Agkistrodon piscivorus mitochondrion, complete ge...    40   5.1    2
(CU855765) Zebrafish DNA sequence from clone CH73-337C12 in ...    38   5.2    5
(AL844504) Plasmodium falciparum 3D7 chromosome 5.                 36   5.6    11
(AC233021) Monodelphis domestica clone VMRC18-825P19, WORKIN...    38   5.7    3
(FM995165) Candida castellii complete mitochondrial genome, ...    36   5.8    4
(EK038392) 1092959489822 Global-Ocean-Sampling_GS-31-01-01-1...    32   6.0    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   6.2    8
(FN368939) Schistosoma mansoni genome sequence supercontig S...    34   6.2    3
(AC133381) Rattus norvegicus clone CH230-63L12, *** SEQUENCI...    36   6.9    4
(GH723386) AZO3.111J19R011126 AZO3 Triticum aestivum cDNA cl...    36   6.9    3
(CU062488) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.0    5
(DH218579) Oryzias latipes Fosmid clone:GOLWFno545_n18, reve...    34   7.3    3
(CU929307) Zebrafish DNA sequence from clone CH1073-406L10.        44   7.4    1
(CT583672) Zebrafish DNA sequence from clone DKEY-190E14 in ...    44   7.4    1
(CR788254) Zebrafish DNA sequence from clone DKEY-82K12 in l...    44   7.4    1
(BX000364) Zebrafish DNA sequence from clone DKEY-11K1 in li...    44   7.4    1
(AC110263) Mus musculus chromosome 3, clone RP23-296I12, com...    44   7.4    1
(AY643736) Solanum tuberosum MADS16 (MADS16) gene, promoter ...    44   7.4    1
(AX344739) Sequence 164 from Patent WO0200927.                     44   7.4    1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    44   7.4    1
(AL160254) Human DNA sequence from clone RP11-576O3 on chrom...    44   7.4    1
(AC090348) Homo sapiens chromosome 18, clone RP11-834M2, com...    44   7.4    1
(AC060225) Homo sapiens 3 BAC RP11-23J16 (Roswell Park Cance...    44   7.4    1
(FP236325) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.4    1
(CU571030) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU468946) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(AC090302) Homo sapiens chromosome 18 clone RP11-751D8 map 1...    44   7.4    1
(AC026354) Homo sapiens chromosome 3 clone RP11-79H17, WORKI...    44   7.4    1
(AP001529) Homo sapiens genomic DNA, chromosome 18q22 clone:...    44   7.4    1
(AP001398) Homo sapiens genomic DNA, chromosome 18q22, clone...    44   7.4    1
(AL139325) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   7.4    1
(AC015778) Homo sapiens clone RP11-2I11, WORKING DRAFT SEQUE...    44   7.4    1
(ET087880) QM0AAA11CG11RM1 CCL1 Citrus clementina genomic cl...    44   7.4    1
(ET056790) MUGQ_CH252P349B24T7_CP654_096 CHORI-252 Vervet Mo...    44   7.4    1
(EJ071917) 1095458089791 Global-Ocean-Sampling_GS-26-01-01-1...    44   7.4    1
(ED219466) AUAC-aao05e08.b1 Ascaris suum whole genome shotgu...    44   7.4    1
(DX394005) GE__Sa0023A12.b1 Gossypium exiguum WGS library Go...    44   7.4    1
(DU946271) 375369 Tomato EcoRI BAC Library Solanum lycopersi...    44   7.4    1
(CZ869494) OC__Ba0267D07.r OC__Ba Oryza coarctata genomic cl...    44   7.4    1
(CZ539977) SRAA-aad29a06.b1 Strongyloides ratti whole genome...    44   7.4    1
(DT449155) JGI_CABK8332.fwd NIH_XGC_tropSpl1 Xenopus (Silura...    44   7.4    1
(CO818161) est_l_vannamei2645 WdCthem9h Litopenaeus vannamei...    44   7.4    1
(C90601) Dictyostelium discoideum slug cDNA, clone SSI833.         44   7.4    1
(BJ346387) Dictyostelium discoideum cDNA clone:dda30c19, 3' ...    44   7.4    1
(FM937459) Brachionus plicatilis EST 5' end, clone sb104P004...    44   7.4    1
(FM918029) Brachionus plicatilis EST 5' end, clone sb102P004...    44   7.4    1
(FM911526) Brachionus plicatilis EST 5' end, clone sb102P000...    44   7.4    1
(FG300388) 1108793370376 New World Screwworm Larvae 9387 EST...    44   7.4    1
(FG298970) 1108793323643 New World Screwworm Larvae 9387 EST...    44   7.4    1
(FG298006) 1108793298769 New World Screwworm Larvae 9387 EST...    44   7.4    1
(FE124812) LV_HC_RA079B17f Litopenaeus vannamei hemocyte cDN...    44   7.4    1
(FE124811) LV_HC_RA079P15r Litopenaeus vannamei hemocyte cDN...    44   7.4    1
(FE055643) LV_ES_RA23D21f Litopenaeus vannamei eyestalk cDNA...    44   7.4    1
(AJ514254) Bacteroides sp. 139 rumB gene (partial), ORF2, ru...    44   7.4    1
(AM487353) Vitis vinifera, whole genome shotgun sequence, co...    40   7.7    5
(AC171618) Medicago truncatula clone mth2-144n17, complete s...    42   8.1    2
(CU582791) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   9.2    4
(DR402491) TKN083E06_632504 Taraxacum kok-saghyz root cDNA l...    30   9.5    3
(BD452983) Diagnosis of Diseases Associated with tumor suppr...    34   9.8    4
(AX251462) Sequence 430 from Patent WO0168912.                     34   9.8    4

>(AU038445) Dictyostelium discoideum slug cDNA, clone SSH728.
          Length = 276

 Score =  349 bits (176), Expect(2) = e-108
 Identities = 176/176 (100%)
 Strand = Plus / Plus


Query: 439 tgcaacaccacccgaattgagggaacgactaatagcacttcttgaaataccaaagagatt 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgcaacaccacccgaattgagggaacgactaatagcacttcttgaaataccaaagagatt 60


Query: 499 tgcaatttcttgttgagtggaactattgtctttctgtgtatacattttcacagcggctgt 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgcaatttcttgttgagtggaactattgtctttctgtgtatacattttcacagcggctgt 120


Query: 559 cagatttactcctgaaagaattgaacaaatgtcaaattctatttaaaaataaaatg 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagatttactcctgaaagaattgaacaaatgtcaaattctatttaaaaataaaatg 176

 Score = 75.8 bits (38), Expect(2) = e-108
 Identities = 38/38 (100%)
 Strand = Plus / Plus


Query: 624 atttattatttgcacagttgtaatattataaatatatt 661
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 186 atttattatttgcacagttgtaatattataaatatatt 223

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 951,123,733
Number of extensions: 62657409
Number of successful extensions: 5222840
Number of sequences better than 10.0: 141
Length of query: 713
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 689
Effective length of database: 102,084,959,077
Effective search space: 70336536804053
Effective search space used: 70336536804053
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05383-1 (Contig-U05383-1Q) /CSM_Contig/Contig-U05383-1Q.Seq.d
         (713 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY165028_1(AY165028|pid:none) Nectria haematococca transposon Nh...    54   6e-06
DQ649003_1(DQ649003|pid:none) Ophiostoma novo-ulmi subsp. novo-u...    49   2e-04
DQ649004_1(DQ649004|pid:none) Ophiostoma ulmi transposon OPHIO2,...    48   3e-04
U78574_1(U78574|pid:none) Nectria haematococca transposon NHT1A ...    45   0.003
AP007151_1038(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...    43   0.011
AF205929_1(AF205929|pid:none) Candida albicans transposon Cirt2 ...    38   0.27
S51577(S51577) transposase - rice blast fungus  &Z33638_1(Z33638...    38   0.27
U74294_1(U74294|pid:none) Botryotinia fuckeliana Flipper transpo...    37   0.46
AJ249920_1(AJ249920|pid:none) Magnaporthe grisea RAPD marker DNA...    37   0.46
(Q96MW7) RecName: Full=Tigger transposable element-derived prote...    37   0.61
AM270150_5(AM270150|pid:none) Aspergillus niger contig An07c0330...    37   0.79
U49973_1(U49973|pid:none) Human Tigger1 transposable element, co...    36   1.0
S72481(S72481;S72486)probable transposase - human transposon MER37     36   1.3
CR940347_1028(CR940347|pid:none) Theileria annulata strain Ankar...    35   3.0
AM920436_1090(AM920436|pid:none) Penicillium chrysogenum Wiscons...    33   6.7
AM920435_762(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    33   8.7

>AY165028_1(AY165028|pid:none) Nectria haematococca transposon
           Nht1-like putative transposase gene, partial cds.
          Length = 550

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 39/115 (33%), Positives = 55/115 (47%)
 Frame = +3

Query: 42  RILSLEQEAQLIQWIEEEIDLNQTVTKDRIKKRVCTMFTERVGKPRDSVSDDWWLNFRNR 221
           R LS +QE +L  WI  +  L    + D+I  R C M   R       +  +W   F NR
Sbjct: 61  RRLSKDQEDRLAFWILRQESLGYAPSHDQI--RACVMGLLRRQGEHPELGRNWVARFINR 118

Query: 222 HPEIKLKLVKFQDLKRPDAAKTLDKAGFWERAWEIIERNRIKPQNVVNIDEKGIL 386
             ++K K+ + Q+ KR DA     KA  W       +   IKP+N VN+DE GI+
Sbjct: 119 RTDLKTKMGRRQEAKRFDAFTP--KAVHWYFDIREGQYGWIKPENTVNVDEGGIM 171

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,058,705,566
Number of extensions: 19756520
Number of successful extensions: 60015
Number of sequences better than 10.0: 16
Number of HSP's gapped: 59996
Number of HSP's successfully gapped: 16
Length of query: 237
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 112
Effective length of database: 652,629,681
Effective search space: 73094524272
Effective search space used: 73094524272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.90  gvh: 0.45  alm: 0.45  top: 0.33  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U05383-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0